AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427600 MtrunA17_Chr3g0130201 89.091 165 12 1 1 165 9 167 3.13e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427600 AT1G74880.1 58.788 165 61 1 1 165 1 158 1.66e-62 190

Find 58 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTTACCGTCAATTATT+TGG 0.062226 3_2:+78271851 Msa0427600:three_prime_UTR
GGTTTCTTAGGAAGAGTCTT+AGG 0.205905 3_2:-78270874 None:intergenic
GTAGTCTAATCCTTTGTAAT+AGG 0.224129 3_2:-78271178 None:intergenic
CTGGAATAAACAGGTTTCTT+AGG 0.242562 3_2:-78270886 None:intergenic
TCATGGCCGAAAACATTATC+TGG 0.263318 3_2:-78271892 None:intergenic
ATTGTGTCTCTCTTAATTAA+TGG 0.294241 3_2:+78270645 Msa0427600:exon
ATCTTTACCGTCAATTATTT+GGG 0.313147 3_2:+78271852 Msa0427600:three_prime_UTR
CTTATCTCTAGTTGTATGTA+TGG 0.394151 3_2:+78270621 Msa0427600:five_prime_UTR
CTTGACTCACTGGAATAAAC+AGG 0.396415 3_2:-78270895 None:intergenic
GATATGCGTATATTTGAAAC+AGG 0.408664 3_2:+78271318 Msa0427600:CDS
CAAATAATTGACGGTAAAGA+TGG 0.409008 3_2:-78271850 None:intergenic
TCTTGAACTGCACGAATCAA+TGG 0.413571 3_2:-78270760 None:intergenic
GTTTCTTAGGAAGAGTCTTA+GGG 0.440236 3_2:-78270873 None:intergenic
TGCTTAATTCTCAGGTTGCA+TGG 0.442545 3_2:+78271531 Msa0427600:intron
GCAGTTCAAGACGGTGAACC+AGG 0.447486 3_2:+78270772 Msa0427600:CDS
TAGTCTAATCCTTTGTAATA+GGG 0.459657 3_2:-78271177 None:intergenic
GCATCAGAGCTCTTAGTTTG+TGG 0.477417 3_2:-78270808 None:intergenic
TCTTACAATACTAGACAAAC+AGG 0.486958 3_2:-78271784 None:intergenic
AAATAATTGACGGTAAAGAT+GGG 0.491445 3_2:-78271849 None:intergenic
TTTGAGAAATGGGAAAGAGA+AGG 0.496635 3_2:-78270703 None:intergenic
CTTGAACTGCACGAATCAAT+GGG 0.503362 3_2:-78270759 None:intergenic
GGAAGCCAAGCTGGAGCAGT+GGG 0.508111 3_2:-78271563 None:intergenic
AGGAAGAGTCTTAGGGGCAG+TGG 0.518025 3_2:-78270866 None:intergenic
ATGGGAAAGAGAAGGAAAGG+AGG 0.524817 3_2:-78270695 None:intergenic
GAAATGGGAAAGAGAAGGAA+AGG 0.530112 3_2:-78270698 None:intergenic
TAATTGTCCCAAATAATTGA+CGG 0.531007 3_2:-78271859 None:intergenic
GCTTAATTCTCAGGTTGCAT+GGG 0.543172 3_2:+78271532 Msa0427600:intron
TCCTACATACATGCTTATCA+AGG 0.544432 3_2:+78271583 Msa0427600:CDS
AGGAAGCCAAGCTGGAGCAG+TGG 0.544685 3_2:-78271564 None:intergenic
GAGTCCCCACTGCTCCAGCT+TGG 0.545534 3_2:+78271558 Msa0427600:CDS
AATTTGTGGACAGTGAAGAA+AGG 0.549691 3_2:+78270995 Msa0427600:intron
AATTCTCAGGTTGCATGGGT+AGG 0.550094 3_2:+78271536 Msa0427600:intron
TTGACGGTAAAGATGGGGTA+TGG 0.550468 3_2:-78271843 None:intergenic
TCTAATCCTTTGTAATAGGG+TGG 0.556199 3_2:-78271174 None:intergenic
TGAAGAAAGGTCAGATTGTG+AGG 0.558487 3_2:+78271008 Msa0427600:CDS
ATGTATGTAGGAAGCCAAGC+TGG 0.563654 3_2:-78271572 None:intergenic
GGGCACCCACCCTATTACAA+AGG 0.572065 3_2:+78271168 Msa0427600:CDS
TCAGATTGTGAGGGTGGACA+AGG 0.576125 3_2:+78271018 Msa0427600:CDS
GAAAGGTCAGATTGTGAGGG+TGG 0.585375 3_2:+78271012 Msa0427600:CDS
CATGGCCGAAAACATTATCT+GGG 0.595369 3_2:-78271891 None:intergenic
CTAATCCTTTGTAATAGGGT+GGG 0.595783 3_2:-78271173 None:intergenic
CAGTTCAAGACGGTGAACCA+GGG 0.597426 3_2:+78270773 Msa0427600:CDS
AGCACTACTAGAGGAGGCTG+AGG 0.602396 3_2:-78270833 None:intergenic
ATGGGGTATGGTGTCTCTGA+TGG 0.613977 3_2:-78271831 None:intergenic
TTGATTCGTGCAGTTCAAGA+CGG 0.616062 3_2:+78270763 Msa0427600:CDS
TTTGTTTGTTTACCTCACCA+CGG 0.617430 3_2:-78271212 None:intergenic
AGTTCAAGACGGTGAACCAG+GGG 0.628235 3_2:+78270774 Msa0427600:CDS
ACCTTGATAAGCATGTATGT+AGG 0.632174 3_2:-78271584 None:intergenic
GAATCAATGGGAAAGAAGAA+CGG 0.633893 3_2:-78270747 None:intergenic
TTTCTTAGGAAGAGTCTTAG+GGG 0.641863 3_2:-78270872 None:intergenic
AATAATTGACGGTAAAGATG+GGG 0.654864 3_2:-78271848 None:intergenic
GAAGAAAGGTCAGATTGTGA+GGG 0.659835 3_2:+78271009 Msa0427600:CDS
AGACTGAGCACTACTAGAGG+AGG 0.683341 3_2:-78270839 None:intergenic
GACTACATTTACGAAGACCG+TGG 0.695548 3_2:+78271195 Msa0427600:CDS
TGAAGACTGAGCACTACTAG+AGG 0.698555 3_2:-78270842 None:intergenic
CATTTACGAAGACCGTGGTG+AGG 0.713150 3_2:+78271200 Msa0427600:CDS
GTTCAAGACGGTGAACCAGG+GGG 0.724086 3_2:+78270775 Msa0427600:CDS
GAAGCCAAGCTGGAGCAGTG+GGG 0.758823 3_2:-78271562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATTTTTGTTAATTTG+TGG + chr3_2:78270981-78271000 Msa0427600:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG - chr3_2:78271240-78271259 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG - chr3_2:78271418-78271437 None:intergenic 15.0%
!!! TATTCATTTTTGTTAATTTG+TGG + chr3_2:78270981-78271000 Msa0427600:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG - chr3_2:78271240-78271259 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG - chr3_2:78271418-78271437 None:intergenic 15.0%
! ATTGTGTCTCTCTTAATTAA+TGG + chr3_2:78270645-78270664 Msa0427600:exon 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG - chr3_2:78270716-78270735 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG - chr3_2:78270717-78270736 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG + chr3_2:78270716-78270735 Msa0427600:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG - chr3_2:78271141-78271160 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG + chr3_2:78271147-78271166 Msa0427600:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG + chr3_2:78271148-78271167 Msa0427600:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG - chr3_2:78271180-78271199 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG + chr3_2:78271290-78271309 Msa0427600:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG + chr3_2:78271450-78271469 Msa0427600:intron 25.0%
! AAATAATTGACGGTAAAGAT+GGG - chr3_2:78271852-78271871 None:intergenic 25.0%
! ATCTTTACCGTCAATTATTT+GGG + chr3_2:78271852-78271871 Msa0427600:three_prime_UTR 25.0%
! TAATTGTCCCAAATAATTGA+CGG - chr3_2:78271862-78271881 None:intergenic 25.0%
! ATTGTGTCTCTCTTAATTAA+TGG + chr3_2:78270645-78270664 Msa0427600:exon 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG - chr3_2:78270716-78270735 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG - chr3_2:78270717-78270736 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG + chr3_2:78270716-78270735 Msa0427600:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG - chr3_2:78271141-78271160 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG + chr3_2:78271147-78271166 Msa0427600:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG + chr3_2:78271148-78271167 Msa0427600:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG - chr3_2:78271180-78271199 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG + chr3_2:78271290-78271309 Msa0427600:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG + chr3_2:78271450-78271469 Msa0427600:intron 25.0%
! AAATAATTGACGGTAAAGAT+GGG - chr3_2:78271852-78271871 None:intergenic 25.0%
! ATCTTTACCGTCAATTATTT+GGG + chr3_2:78271852-78271871 Msa0427600:three_prime_UTR 25.0%
! TAATTGTCCCAAATAATTGA+CGG - chr3_2:78271862-78271881 None:intergenic 25.0%
! AAGAAGATGACTCTTTTGTT+GGG - chr3_2:78270604-78270623 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG - chr3_2:78270605-78270624 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG + chr3_2:78270621-78270640 Msa0427600:five_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG - chr3_2:78271181-78271200 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG + chr3_2:78271318-78271337 Msa0427600:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG - chr3_2:78271466-78271485 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG + chr3_2:78271606-78271625 Msa0427600:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG - chr3_2:78271727-78271746 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG - chr3_2:78271787-78271806 None:intergenic 30.0%
AATAATTGACGGTAAAGATG+GGG - chr3_2:78271851-78271870 None:intergenic 30.0%
CAAATAATTGACGGTAAAGA+TGG - chr3_2:78271853-78271872 None:intergenic 30.0%
CATCTTTACCGTCAATTATT+TGG + chr3_2:78271851-78271870 Msa0427600:three_prime_UTR 30.0%
! AAGAAGATGACTCTTTTGTT+GGG - chr3_2:78270604-78270623 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG - chr3_2:78270605-78270624 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG + chr3_2:78270621-78270640 Msa0427600:five_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG - chr3_2:78271181-78271200 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG + chr3_2:78271318-78271337 Msa0427600:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG - chr3_2:78271466-78271485 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG + chr3_2:78271606-78271625 Msa0427600:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG - chr3_2:78271727-78271746 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG - chr3_2:78271787-78271806 None:intergenic 30.0%
AATAATTGACGGTAAAGATG+GGG - chr3_2:78271851-78271870 None:intergenic 30.0%
CAAATAATTGACGGTAAAGA+TGG - chr3_2:78271853-78271872 None:intergenic 30.0%
CATCTTTACCGTCAATTATT+TGG + chr3_2:78271851-78271870 Msa0427600:three_prime_UTR 30.0%
TTTGAGAAATGGGAAAGAGA+AGG - chr3_2:78270706-78270725 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG - chr3_2:78270750-78270769 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG - chr3_2:78270875-78270894 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG - chr3_2:78270876-78270895 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG - chr3_2:78270889-78270908 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG + chr3_2:78270995-78271014 Msa0427600:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG - chr3_2:78271176-78271195 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG - chr3_2:78271177-78271196 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG - chr3_2:78271215-78271234 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG + chr3_2:78271296-78271315 Msa0427600:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG + chr3_2:78271523-78271542 Msa0427600:intron 35.0%
TCCTACATACATGCTTATCA+AGG + chr3_2:78271583-78271602 Msa0427600:CDS 35.0%
ACCTTGATAAGCATGTATGT+AGG - chr3_2:78271587-78271606 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG - chr3_2:78271625-78271644 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG + chr3_2:78271886-78271905 Msa0427600:three_prime_UTR 35.0%
TTTGAGAAATGGGAAAGAGA+AGG - chr3_2:78270706-78270725 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG - chr3_2:78270750-78270769 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG - chr3_2:78270875-78270894 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG - chr3_2:78270876-78270895 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG - chr3_2:78270889-78270908 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG + chr3_2:78270995-78271014 Msa0427600:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG - chr3_2:78271176-78271195 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG - chr3_2:78271177-78271196 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG - chr3_2:78271215-78271234 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG + chr3_2:78271296-78271315 Msa0427600:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG + chr3_2:78271523-78271542 Msa0427600:intron 35.0%
TCCTACATACATGCTTATCA+AGG + chr3_2:78271583-78271602 Msa0427600:CDS 35.0%
ACCTTGATAAGCATGTATGT+AGG - chr3_2:78271587-78271606 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG - chr3_2:78271625-78271644 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG + chr3_2:78271886-78271905 Msa0427600:three_prime_UTR 35.0%
GAAATGGGAAAGAGAAGGAA+AGG - chr3_2:78270701-78270720 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG - chr3_2:78270762-78270781 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG - chr3_2:78270763-78270782 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG + chr3_2:78270763-78270782 Msa0427600:CDS 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG - chr3_2:78270877-78270896 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG - chr3_2:78270898-78270917 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG - chr3_2:78270908-78270927 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG + chr3_2:78271008-78271027 Msa0427600:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG + chr3_2:78271009-78271028 Msa0427600:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG + chr3_2:78271097-78271116 Msa0427600:intron 40.0%
GGACTCAAATAACATGTCCA+AGG + chr3_2:78271121-78271140 Msa0427600:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG - chr3_2:78271530-78271549 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG + chr3_2:78271531-78271550 Msa0427600:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG + chr3_2:78271532-78271551 Msa0427600:intron 40.0%
GAAATGGGAAAGAGAAGGAA+AGG - chr3_2:78270701-78270720 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG - chr3_2:78270762-78270781 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG - chr3_2:78270763-78270782 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG + chr3_2:78270763-78270782 Msa0427600:CDS 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG - chr3_2:78270877-78270896 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG - chr3_2:78270898-78270917 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG - chr3_2:78270908-78270927 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG + chr3_2:78271008-78271027 Msa0427600:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG + chr3_2:78271009-78271028 Msa0427600:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG + chr3_2:78271097-78271116 Msa0427600:intron 40.0%
GGACTCAAATAACATGTCCA+AGG + chr3_2:78271121-78271140 Msa0427600:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG - chr3_2:78271530-78271549 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG + chr3_2:78271531-78271550 Msa0427600:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG + chr3_2:78271532-78271551 Msa0427600:intron 40.0%
ATGGGAAAGAGAAGGAAAGG+AGG - chr3_2:78270698-78270717 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG - chr3_2:78270811-78270830 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG - chr3_2:78270845-78270864 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG + chr3_2:78271100-78271119 Msa0427600:intron 45.0%
GACTACATTTACGAAGACCG+TGG + chr3_2:78271195-78271214 Msa0427600:CDS 45.0%
! AATTCTCAGGTTGCATGGGT+AGG + chr3_2:78271536-78271555 Msa0427600:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG - chr3_2:78271575-78271594 None:intergenic 45.0%
TTGACGGTAAAGATGGGGTA+TGG - chr3_2:78271846-78271865 None:intergenic 45.0%
ATGGGAAAGAGAAGGAAAGG+AGG - chr3_2:78270698-78270717 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG - chr3_2:78270811-78270830 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG - chr3_2:78270845-78270864 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG + chr3_2:78271100-78271119 Msa0427600:intron 45.0%
GACTACATTTACGAAGACCG+TGG + chr3_2:78271195-78271214 Msa0427600:CDS 45.0%
! AATTCTCAGGTTGCATGGGT+AGG + chr3_2:78271536-78271555 Msa0427600:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG - chr3_2:78271575-78271594 None:intergenic 45.0%
TTGACGGTAAAGATGGGGTA+TGG - chr3_2:78271846-78271865 None:intergenic 45.0%
!! AATTCAAATAAATATTTATT+TGG - chr3_2:78270924-78270943 None:intergenic 5.0%
!! AATTCAAATAAATATTTATT+TGG - chr3_2:78270924-78270943 None:intergenic 5.0%
CAGTTCAAGACGGTGAACCA+GGG + chr3_2:78270773-78270792 Msa0427600:CDS 50.0%
AGTTCAAGACGGTGAACCAG+GGG + chr3_2:78270774-78270793 Msa0427600:CDS 50.0%
AGACTGAGCACTACTAGAGG+AGG - chr3_2:78270842-78270861 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG + chr3_2:78271012-78271031 Msa0427600:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG + chr3_2:78271018-78271037 Msa0427600:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG + chr3_2:78271200-78271219 Msa0427600:CDS 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG + chr3_2:78271365-78271384 Msa0427600:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG + chr3_2:78271378-78271397 Msa0427600:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG - chr3_2:78271834-78271853 None:intergenic 50.0%
GGCACGTCACTATAGTGTGA+TGG - chr3_2:78270583-78270602 None:intergenic 50.0%
CAGTTCAAGACGGTGAACCA+GGG + chr3_2:78270773-78270792 Msa0427600:CDS 50.0%
AGTTCAAGACGGTGAACCAG+GGG + chr3_2:78270774-78270793 Msa0427600:CDS 50.0%
AGACTGAGCACTACTAGAGG+AGG - chr3_2:78270842-78270861 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG + chr3_2:78271012-78271031 Msa0427600:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG + chr3_2:78271018-78271037 Msa0427600:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG + chr3_2:78271200-78271219 Msa0427600:CDS 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG + chr3_2:78271365-78271384 Msa0427600:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG + chr3_2:78271378-78271397 Msa0427600:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG - chr3_2:78271834-78271853 None:intergenic 50.0%
GCAGTTCAAGACGGTGAACC+AGG + chr3_2:78270772-78270791 Msa0427600:CDS 55.0%
GTTCAAGACGGTGAACCAGG+GGG + chr3_2:78270775-78270794 Msa0427600:CDS 55.0%
AGCACTACTAGAGGAGGCTG+AGG - chr3_2:78270836-78270855 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG - chr3_2:78270869-78270888 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG + chr3_2:78271168-78271187 Msa0427600:CDS 55.0%
GCAGTTCAAGACGGTGAACC+AGG + chr3_2:78270772-78270791 Msa0427600:CDS 55.0%
GTTCAAGACGGTGAACCAGG+GGG + chr3_2:78270775-78270794 Msa0427600:CDS 55.0%
AGCACTACTAGAGGAGGCTG+AGG - chr3_2:78270836-78270855 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG - chr3_2:78270869-78270888 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG + chr3_2:78271168-78271187 Msa0427600:CDS 55.0%
GGCATGCTGTCAGCTGCCTT+TGG - chr3_2:78271397-78271416 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG - chr3_2:78271565-78271584 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG - chr3_2:78271566-78271585 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG - chr3_2:78271567-78271586 None:intergenic 60.0%
GGCATGCTGTCAGCTGCCTT+TGG - chr3_2:78271397-78271416 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG - chr3_2:78271565-78271584 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG - chr3_2:78271566-78271585 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG - chr3_2:78271567-78271586 None:intergenic 60.0%
TGTGGCTGTGTACTGCCCCC+TGG - chr3_2:78270793-78270812 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG + chr3_2:78271558-78271577 Msa0427600:CDS 65.0%
TGTGGCTGTGTACTGCCCCC+TGG - chr3_2:78270793-78270812 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG + chr3_2:78271558-78271577 Msa0427600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78270583 78271911 78270583 ID=Msa0427600;Name=Msa0427600
chr3_2 mRNA 78270583 78271911 78270583 ID=Msa0427600-mRNA-1;Parent=Msa0427600;Name=Msa0427600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=81|1|1|1|1|1|6|132|165
chr3_2 exon 78270583 78270907 78270583 ID=Msa0427600-mRNA-1:exon:20532;Parent=Msa0427600-mRNA-1
chr3_2 exon 78271008 78271063 78271008 ID=Msa0427600-mRNA-1:exon:20533;Parent=Msa0427600-mRNA-1
chr3_2 exon 78271156 78271221 78271156 ID=Msa0427600-mRNA-1:exon:20534;Parent=Msa0427600-mRNA-1
chr3_2 exon 78271312 78271353 78271312 ID=Msa0427600-mRNA-1:exon:20535;Parent=Msa0427600-mRNA-1
chr3_2 exon 78271545 78271604 78271545 ID=Msa0427600-mRNA-1:exon:20536;Parent=Msa0427600-mRNA-1
chr3_2 exon 78271750 78271911 78271750 ID=Msa0427600-mRNA-1:exon:20537;Parent=Msa0427600-mRNA-1
chr3_2 five_prime_UTR 78270583 78270663 78270583 ID=Msa0427600-mRNA-1:five_prime_utr;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78270664 78270907 78270664 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78271008 78271063 78271008 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78271156 78271221 78271156 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78271312 78271353 78271312 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78271545 78271604 78271545 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 CDS 78271750 78271779 78271750 ID=Msa0427600-mRNA-1:cds;Parent=Msa0427600-mRNA-1
chr3_2 three_prime_UTR 78271780 78271911 78271780 ID=Msa0427600-mRNA-1:three_prime_utr;Parent=Msa0427600-mRNA-1
Gene Sequence

>Msa0427600

ATGGCTTTCTGTGTAACTCTCTGCTACTACACCTCCTTTCCTTCTCTTTCCCATTTCTCAAAAACTTTGACAAGGAAACATGTCCGTTCTTCTTTCCCATTGATTCGTGCAGTTCAAGACGGTGAACCAGGGGGCAGTACACAGCCACAAACTAAGAGCTCTGATGCTTCCTCAGCCTCCTCTAGTAGTGCTCAGTCTTCAACCACTGCCCCTAAGACTCTTCCTAAGAAACCTGTTTATTCCATGAAGAAAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCATCAATTATCTTTCTGTTGGGCACCCACCCTATTACAAAGGATTAGACTACATTTACGAAGACCGTGGTGAGGTCTTGGATATGCGTATATTTGAAACAGGAGAGCATGCACTTGTTGCATGGGTAGGAGTCCCCACTGCTCCAGCTTGGCTTCCTACATACATGCTTATCAAGTCAGAGAAGCTCAATTATGAGAGACTATAA

Protein sequence

>Msa0427600

MAFCVTLCYYTSFPSLSHFSKTLTRKHVRSSFPLIRAVQDGEPGGSTQPQTKSSDASSASSSSAQSSTTAPKTLPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDMRIFETGEHALVAWVGVPTAPAWLPTYMLIKSEKLNYERL*