AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692450 MtrunA17_Chr4g0042711 97.830 507 11 0 1 507 1 507 0.0 1039
Msa0692450 MtrunA17_Chr5g0417871 79.835 486 91 3 28 506 9 494 0.0 819
Msa0692450 MtrunA17_Chr6g0455571 58.799 483 197 2 8 488 25 507 0.0 605
Msa0692450 MtrunA17_Chr4g0061781 61.456 467 172 3 29 488 43 508 0.0 602
Msa0692450 MtrunA17_Chr2g0307971 57.692 494 201 4 8 499 30 517 0.0 597
Msa0692450 MtrunA17_Chr5g0426591 48.675 415 201 4 87 489 97 511 6.15e-140 413
Msa0692450 MtrunA17_Chr4g0070551 48.232 396 198 5 97 490 228 618 4.42e-135 404
Msa0692450 MtrunA17_Chr4g0008451 47.932 411 205 6 97 505 232 635 2.94e-134 403
Msa0692450 MtrunA17_Chr3g0132371 47.952 415 201 5 87 489 127 538 5.68e-132 394
Msa0692450 MtrunA17_Chr5g0436321 46.851 397 204 5 96 490 160 551 5.20e-130 389
Msa0692450 MtrunA17_Chr3g0129981 45.735 422 200 8 87 489 100 511 8.68e-125 374
Msa0692450 MtrunA17_Chr3g0143821 42.714 398 211 8 98 492 112 495 1.21e-99 311
Msa0692450 MtrunA17_Chr5g0399311 42.143 420 218 10 92 504 119 520 1.69e-99 309
Msa0692450 MtrunA17_Chr5g0448581 40.611 458 238 11 54 505 90 519 2.29e-98 308
Msa0692450 MtrunA17_Chr4g0056061 40.876 411 220 8 93 497 104 497 2.88e-98 306
Msa0692450 MtrunA17_Chr1g0204121 40.189 423 221 12 83 492 74 477 3.56e-93 293
Msa0692450 MtrunA17_Chr5g0412251 38.051 431 218 9 97 491 86 503 9.14e-91 286
Msa0692450 MtrunA17_Chr3g0123521 39.231 390 217 7 90 464 144 528 1.27e-89 285
Msa0692450 MtrunA17_Chr3g0132951 36.613 437 228 9 91 491 94 517 1.74e-87 278
Msa0692450 MtrunA17_Chr1g0204141 38.005 421 236 10 83 492 74 480 4.28e-84 269
Msa0692450 MtrunA17_Chr4g0043911 35.096 416 243 10 97 496 150 554 1.66e-81 264
Msa0692450 MtrunA17_Chr4g0075311 37.642 441 220 11 94 489 161 591 5.45e-79 258
Msa0692450 MtrunA17_Chr5g0424241 36.650 412 231 10 98 489 158 559 3.04e-78 256
Msa0692450 MtrunA17_Chr2g0284071 35.892 443 231 10 91 490 209 641 7.11e-78 256
Msa0692450 MtrunA17_Chr1g0160781 34.223 412 244 9 97 492 149 549 3.35e-76 249
Msa0692450 MtrunA17_Chr3g0077321 35.817 416 228 12 97 490 147 545 7.83e-75 246
Msa0692450 MtrunA17_Chr3g0087291 36.432 398 234 9 100 492 176 559 2.23e-71 237
Msa0692450 MtrunA17_Chr4g0010511 36.409 401 236 8 100 495 236 622 1.11e-70 237
Msa0692450 MtrunA17_Chr7g0240241 77.419 124 24 1 256 375 1 124 9.91e-61 195
Msa0692450 MtrunA17_Chr4g0003561 33.957 374 221 9 90 457 68 421 7.80e-59 201
Msa0692450 MtrunA17_Chr3g0127811 32.997 297 171 8 97 379 63 345 1.28e-41 155
Msa0692450 MtrunA17_Chr1g0146501 32.686 309 180 8 94 379 82 385 1.74e-41 157
Msa0692450 MtrunA17_Chr7g0220381 31.579 304 185 7 85 370 86 384 3.65e-39 151
Msa0692450 MtrunA17_Chr4g0002361 26.225 347 196 12 97 427 86 388 1.60e-23 102
Msa0692450 MtrunA17_Chr1g0172911 58.000 50 21 0 209 258 80 129 2.40e-12 64.3
Msa0692450 MtrunA17_Chr1g0172911 47.761 67 11 1 95 137 19 85 1.37e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692450 AT1G14020.1 72.079 505 135 2 1 505 1 499 0.0 761
Msa0692450 AT2G03280.1 69.528 466 130 4 24 488 26 480 0.0 686
Msa0692450 AT2G03280.2 65.720 493 130 5 24 488 26 507 0.0 672
Msa0692450 AT5G15740.1 58.030 467 194 2 23 488 33 498 0.0 579
Msa0692450 AT3G02250.1 58.526 475 193 3 15 488 27 498 0.0 576
Msa0692450 AT2G37980.1 46.453 437 227 5 73 507 202 633 1.13e-137 412
Msa0692450 AT3G54100.1 46.065 432 216 7 73 497 198 619 2.19e-133 400
Msa0692450 AT5G35570.1 47.407 405 206 5 96 498 250 649 5.04e-132 397
Msa0692450 AT1G22460.1 45.370 432 216 6 76 490 130 558 4.55e-129 387
Msa0692450 AT5G64600.1 46.778 419 200 8 87 489 103 514 6.43e-129 385
Msa0692450 AT5G01100.1 47.132 401 204 5 97 493 216 612 5.87e-128 386
Msa0692450 AT1G76270.1 44.332 397 205 7 100 494 109 491 1.93e-103 321
Msa0692450 AT1G20550.1 42.157 408 220 7 100 505 112 505 4.98e-102 317
Msa0692450 AT4G38390.1 43.250 400 213 7 97 494 123 510 1.77e-101 316
Msa0692450 AT4G16650.2 43.521 409 207 10 89 490 113 504 3.99e-95 299
Msa0692450 AT4G16650.1 43.521 409 207 10 89 490 113 504 3.99e-95 299
Msa0692450 AT1G04910.1 37.100 469 251 12 50 506 57 493 8.64e-92 290
Msa0692450 AT3G26370.1 38.718 390 219 7 90 464 152 536 1.73e-89 285
Msa0692450 AT4G24530.1 37.674 430 219 9 97 490 101 517 2.79e-89 283
Msa0692450 AT5G65470.1 35.581 430 226 9 99 490 87 503 3.43e-86 275
Msa0692450 AT1G11990.1 39.173 411 222 10 98 491 191 590 8.49e-83 268
Msa0692450 AT1G62330.1 34.862 436 232 8 98 489 222 649 1.35e-82 269
Msa0692450 AT1G38065.1 36.427 431 238 11 79 489 24 438 1.85e-81 261
Msa0692450 AT1G38065.2 37.046 413 230 10 97 489 26 428 2.85e-81 260
Msa0692450 AT1G38131.1 37.046 413 230 10 97 489 155 557 5.86e-80 261
Msa0692450 AT1G11990.2 36.161 448 221 10 98 491 176 612 6.84e-78 256
Msa0692450 AT1G29200.4 37.931 435 219 10 97 490 70 494 2.43e-77 251
Msa0692450 AT1G29200.1 37.931 435 219 10 97 490 70 494 2.43e-77 251
Msa0692450 AT5G63390.1 38.000 400 228 8 100 493 167 552 5.35e-77 252
Msa0692450 AT1G29200.2 37.931 435 219 10 97 490 186 610 5.29e-76 251
Msa0692450 AT1G29200.3 37.762 429 216 10 103 490 2 420 4.30e-75 243
Msa0692450 AT1G35510.1 34.772 417 241 10 92 490 154 557 2.31e-74 245
Msa0692450 AT2G01480.1 36.314 369 213 7 97 449 154 516 4.61e-74 244
Msa0692450 AT1G14970.3 34.625 413 243 11 97 493 9 410 4.96e-74 240
Msa0692450 AT2G01480.2 36.695 357 207 6 97 437 154 507 9.89e-74 243
Msa0692450 AT1G14970.2 34.625 413 243 11 97 493 35 436 9.94e-74 240
Msa0692450 AT1G14970.1 34.625 413 243 11 97 493 155 556 1.14e-72 241
Msa0692450 AT2G44500.1 37.626 396 227 10 100 489 180 561 1.21e-72 241
Msa0692450 AT3G07900.1 34.951 412 243 9 84 489 180 572 1.46e-69 233
Msa0692450 AT1G52630.1 32.708 373 224 10 90 458 70 419 7.11e-59 201
Msa0692450 AT3G03810.2 36.634 303 177 7 91 379 83 384 4.99e-50 182
Msa0692450 AT3G03810.1 36.634 303 177 7 91 379 83 384 4.99e-50 182
Msa0692450 AT1G52630.2 31.054 351 218 9 112 458 1 331 1.31e-49 174
Msa0692450 AT3G26370.2 39.352 216 120 4 90 296 152 365 6.42e-46 165
Msa0692450 AT3G30300.2 33.333 306 180 7 91 379 97 395 5.36e-43 162
Msa0692450 AT3G30300.1 33.333 306 180 7 91 379 97 395 5.36e-43 162
Msa0692450 AT2G44500.2 39.914 233 127 7 100 326 180 405 1.02e-38 146
Msa0692450 AT1G51630.1 24.845 322 192 9 96 406 90 372 1.44e-18 88.6

Find 231 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATCATGGTCCCTTTAA+AGG 0.111107 4_4:+61010029 Msa0692450:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_4:-61009810 None:intergenic
CAAATTCTGTGGACACAATT+TGG 0.185076 4_4:+61005406 Msa0692450:five_prime_UTR
CCATCTGTGATGAATGATTT+TGG 0.203102 4_4:-61009089 None:intergenic
ATTGCAGCCGGTGAGATTTA+TGG 0.227102 4_4:+61008715 Msa0692450:CDS
TGGCATTCCAATTTCTTTAC+TGG 0.232585 4_4:+61005874 Msa0692450:CDS
TTGCAGATTTGTGTTAATTT+TGG 0.236857 4_4:+61005627 Msa0692450:intron
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_4:-61010777 None:intergenic
TCAGATATGCATTCCCTTCA+TGG 0.261168 4_4:+61008575 Msa0692450:intron
GATGGCTGCTTTGGATTTCA+TGG 0.269401 4_4:+61009107 Msa0692450:CDS
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_4:-61009632 None:intergenic
TGCATTCAATCAACCTTTAA+AGG 0.276444 4_4:-61010042 None:intergenic
AGTAAATCCAGTAAAGAAAT+TGG 0.278555 4_4:-61005881 None:intergenic
ACCAGCTTCAAATTCAATTC+TGG 0.283543 4_4:+61005466 Msa0692450:five_prime_UTR
CACCCCTCAAATTGAGAATC+TGG 0.293410 4_4:+61008178 Msa0692450:CDS
TGCTTTGGATTTCATGGTTT+CGG 0.294885 4_4:+61009113 Msa0692450:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_4:-61010173 None:intergenic
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_4:+61010664 Msa0692450:three_prime_UTR
TCCTTTCTTTCCATTCTCAT+TGG 0.305081 4_4:+61005296 Msa0692450:five_prime_UTR
TTCATCACAGATGGCTGCTT+TGG 0.305983 4_4:+61009098 Msa0692450:CDS
TTCTAAGAGTGTCCTGCAAT+GGG 0.310538 4_4:+61007180 Msa0692450:CDS
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_4:+61009368 Msa0692450:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_4:-61009755 None:intergenic
CTAAGTTTCTGTAGATCAAT+TGG 0.331955 4_4:-61008125 None:intergenic
AAGGATTTCTTATCAAGTTC+CGG 0.337356 4_4:-61007363 None:intergenic
GCTTTCTCAGGTTGTACTCT+TGG 0.343079 4_4:+61008278 Msa0692450:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_4:+61009640 Msa0692450:three_prime_UTR
CTGCTGGAAGAGGGTGGTTA+TGG 0.351496 4_4:+61010834 Msa0692450:three_prime_UTR
AACTTGATAAGAAATCCTTT+TGG 0.353716 4_4:+61007367 Msa0692450:CDS
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_4:-61010665 None:intergenic
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_4:-61009485 None:intergenic
TAGCTCTCATGCAGGTATTC+CGG 0.361952 4_4:+61009302 Msa0692450:intron
CCAGCTTCAAATTCAATTCT+GGG 0.362826 4_4:+61005467 Msa0692450:five_prime_UTR
AACAACAGTATGTCATTAAC+TGG 0.364991 4_4:+61010139 Msa0692450:three_prime_UTR
CATTGTGCTGTGGACATGTT+TGG 0.366060 4_4:+61005825 Msa0692450:CDS
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_4:-61010751 None:intergenic
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_4:-61009628 None:intergenic
ACCTTTATTCCTACCTATGA+TGG 0.388352 4_4:+61009147 Msa0692450:CDS
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_4:-61010283 None:intergenic
AGCTAACAGGAGGCATCTCC+AGG 0.388940 4_4:-61007601 None:intergenic
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_4:-61009627 None:intergenic
ATGGACATGCTGGCTTTCTC+AGG 0.395187 4_4:+61008266 Msa0692450:CDS
TGCCCCAGATTCTCAATTTG+AGG 0.396144 4_4:-61008182 None:intergenic
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_4:+61010065 Msa0692450:three_prime_UTR
GAACCTCACATTGGTTGTTC+CGG 0.404001 4_4:+61007344 Msa0692450:CDS
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_4:+61009336 Msa0692450:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_4:+61009980 Msa0692450:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_4:-61010225 None:intergenic
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_4:-61010234 None:intergenic
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_4:+61009979 Msa0692450:three_prime_UTR
GCATTCAATCAACCTTTAAA+GGG 0.417744 4_4:-61010041 None:intergenic
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_4:+61009653 Msa0692450:three_prime_UTR
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_4:+61010803 Msa0692450:three_prime_UTR
GCCTTGGTTATGCAAGCCTT+AGG 0.432969 4_4:+61008667 Msa0692450:CDS
CCCATCATAGGTAGGAATAA+AGG 0.436770 4_4:-61009148 None:intergenic
GTGCATGGATTCAAAGGTTT+GGG 0.437538 4_4:-61005117 None:intergenic
GCAGGAAATTATACTAGTAA+TGG 0.439060 4_4:+61007155 Msa0692450:intron
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_4:+61010253 Msa0692450:three_prime_UTR
TTTCTAAGAGTGTCCTGCAA+TGG 0.444915 4_4:+61007179 Msa0692450:CDS
ATACCTACGGTCTGCCCAAA+AGG 0.445579 4_4:-61007382 None:intergenic
AGGAAATAGTGTCTGAAGAA+AGG 0.445827 4_4:+61008605 Msa0692450:CDS
GATTTCATGGTTTCGGTAGC+CGG 0.450519 4_4:+61009120 Msa0692450:CDS
GGAACTGCTGTAACTCATCA+AGG 0.452325 4_4:-61009068 None:intergenic
TGTGCATGGATTCAAAGGTT+TGG 0.454873 4_4:-61005118 None:intergenic
TGAAAAGTGTGTGAAGGTTA+TGG 0.457566 4_4:+61005653 Msa0692450:five_prime_UTR
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_4:+61009330 Msa0692450:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_4:+61010631 Msa0692450:intron
TGAAGTGTGTGACAAAGAAA+TGG 0.461488 4_4:+61005690 Msa0692450:exon
GAAGTGCACCACCTTGTGTT+TGG 0.463947 4_4:-61008066 None:intergenic
AAGCTGCTCCTTTGATTCCA+AGG 0.468221 4_4:+61005764 Msa0692450:CDS
TTGGGAGACCATTATTTGCT+AGG 0.469220 4_4:-61008106 None:intergenic
GCCCCAGATTCTCAATTTGA+GGG 0.469715 4_4:-61008181 None:intergenic
GAATAAACCAAACACGAAAA+CGG 0.470528 4_4:-61005789 None:intergenic
TCCAATGAGAATGGAAAGAA+AGG 0.471672 4_4:-61005297 None:intergenic
CTAACTTGCAGGAAGTAGAA+TGG 0.473374 4_4:-61005968 None:intergenic
TAAGTTTCTGTAGATCAATT+GGG 0.475386 4_4:-61008124 None:intergenic
TGGAGATGCCTCCTGTTAGC+TGG 0.475776 4_4:+61007603 Msa0692450:CDS
TTGTGACTGTGAGTGAACTA+TGG 0.476628 4_4:+61005854 Msa0692450:CDS
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_4:+61010712 Msa0692450:three_prime_UTR
TAACTTGCAGGAAGTAGAAT+GGG 0.479064 4_4:-61005967 None:intergenic
CAAACACGAAAACGGCTCCT+TGG 0.481546 4_4:-61005781 None:intergenic
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_4:-61010738 None:intergenic
GAAATATATGTTCCATATAG+AGG 0.482623 4_4:+61009743 Msa0692450:three_prime_UTR
AATTGTGTGCATGGATTCAA+AGG 0.483270 4_4:-61005123 None:intergenic
ACCCCTCAAATTGAGAATCT+GGG 0.484445 4_4:+61008179 Msa0692450:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_4:-61010365 None:intergenic
GAGGGGTGAATTTAAGTGCC+TGG 0.487600 4_4:-61008163 None:intergenic
GTCAAATGAAAAGTATTACT+TGG 0.489028 4_4:+61007625 Msa0692450:CDS
CTCAGATGCAATGCCACAAA+AGG 0.490594 4_4:-61008236 None:intergenic
CATAACCACCCTCTTCCAGC+AGG 0.495827 4_4:-61010833 None:intergenic
ACAACTATACTGAATTTGGT+GGG 0.497845 4_4:-61009806 None:intergenic
ATTTCCTTCTCTCTCCATGA+AGG 0.500444 4_4:-61008589 None:intergenic
AGGTGAGGATCCAATGAGAA+TGG 0.501136 4_4:-61005306 None:intergenic
GTAGATGAATTGAGAGATCC+AGG 0.502785 4_4:-61005095 None:intergenic
GATGCACGCCTAGCAAATAA+TGG 0.504541 4_4:+61008098 Msa0692450:CDS
CCCAGAATTGAATTTGAAGC+TGG 0.505271 4_4:-61005467 None:intergenic
ATAACCAAGGCAGTCTCCTC+CGG 0.505709 4_4:-61008655 None:intergenic
CAATTGATCTACAGAAACTT+AGG 0.505738 4_4:+61008126 Msa0692450:CDS
ATGGAAAGAAAGGATCAAAT+CGG 0.506036 4_4:-61005287 None:intergenic
GAATTTGAAGCTGGTGATTG+AGG 0.506597 4_4:-61005458 None:intergenic
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_4:+61009427 Msa0692450:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_4:-61009973 None:intergenic
GGAAGCATCCCTGCTGGAAG+AGG 0.509009 4_4:+61010824 Msa0692450:three_prime_UTR
CCGAGGATCTCAAGCGGATG+AGG 0.509548 4_4:+61008318 Msa0692450:CDS
GTCTGAAGAAAGGAGATCCC+AGG 0.512801 4_4:+61008615 Msa0692450:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_4:-61009807 None:intergenic
GCAGTCTCCTCCGGTGTCAA+AGG 0.517244 4_4:-61008646 None:intergenic
GTGTCAAAGGACATAGACCC+TGG 0.517880 4_4:-61008633 None:intergenic
GACACCGGAGGAGACTGCCT+TGG 0.525025 4_4:+61008651 Msa0692450:CDS
GCATCTACAAACTCATTCCA+TGG 0.525256 4_4:-61009398 None:intergenic
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_4:-61010714 None:intergenic
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_4:+61009654 Msa0692450:three_prime_UTR
TTGAAGAGCTTCAAATTCTG+TGG 0.528024 4_4:+61005395 Msa0692450:five_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_4:-61010799 None:intergenic
CTAAGAGTGTCCTGCAATGG+GGG 0.532495 4_4:+61007182 Msa0692450:CDS
AATTTGAAGCTGGTGATTGA+GGG 0.533657 4_4:-61005457 None:intergenic
CCTCATCCGCTTGAGATCCT+CGG 0.534275 4_4:-61008318 None:intergenic
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_4:+61009409 Msa0692450:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_4:-61010216 None:intergenic
CCTTTATTCCTACCTATGAT+GGG 0.535492 4_4:+61009148 Msa0692450:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_4:-61010251 None:intergenic
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_4:-61010078 None:intergenic
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_4:-61010268 None:intergenic
ATGGGTTGTAATAATTGTGC+CGG 0.537769 4_4:+61009998 Msa0692450:three_prime_UTR
AGATATGGAAGCATCCCTGC+TGG 0.538847 4_4:+61010818 Msa0692450:three_prime_UTR
TGAAAAGTATTACTTGGAGC+AGG 0.539964 4_4:+61007631 Msa0692450:CDS
GAAGCTGGTGATTGAGGGTG+AGG 0.542158 4_4:-61005452 None:intergenic
CCAAAATCATTCATCACAGA+TGG 0.542359 4_4:+61009089 Msa0692450:CDS
CTTCAAATTCAATTCTGGGT+CGG 0.542473 4_4:+61005471 Msa0692450:five_prime_UTR
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_4:+61010713 Msa0692450:three_prime_UTR
TGTCTCCCGGTCAAAACCTA+AGG 0.543702 4_4:-61008683 None:intergenic
AACTATACTGAATTTGGTGG+GGG 0.544382 4_4:-61009804 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_4:-61009394 None:intergenic
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_4:-61010382 None:intergenic
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_4:+61010736 Msa0692450:three_prime_UTR
AAACGGCTCCTTGGAATCAA+AGG 0.552528 4_4:-61005772 None:intergenic
CCCCAGATTCTCAATTTGAG+GGG 0.555415 4_4:-61008180 None:intergenic
GAGATATGAGATGGACATGC+TGG 0.557518 4_4:+61008256 Msa0692450:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_4:-61010750 None:intergenic
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_4:+61009428 Msa0692450:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_4:+61009381 Msa0692450:CDS
CAATGTAAATCTGTGTCTCC+CGG 0.564211 4_4:-61008696 None:intergenic
TTTCCTTCTCTCTCCATGAA+GGG 0.565721 4_4:-61008588 None:intergenic
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_4:+61009514 Msa0692450:CDS
TCTAAGAGTGTCCTGCAATG+GGG 0.572836 4_4:+61007181 Msa0692450:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_4:-61009805 None:intergenic
ACACAGATTTACATTGCAGC+CGG 0.575721 4_4:+61008703 Msa0692450:CDS
GGGTCTATGTCCTTTGACAC+CGG 0.576261 4_4:+61008636 Msa0692450:CDS
ACAATGATTCGACGATAAGT+CGG 0.577569 4_4:-61009455 None:intergenic
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_4:-61009669 None:intergenic
GTGACATGGTGACAATTGCT+CGG 0.579350 4_4:+61007316 Msa0692450:CDS
TGGGAACATGGCAAAACTTG+TGG 0.580054 4_4:+61009167 Msa0692450:CDS
TAGGTGCCGTGTTAATTACC+AGG 0.582283 4_4:+61008145 Msa0692450:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_4:+61010301 Msa0692450:three_prime_UTR
GATTCAGATACTTCGCGAGA+GGG 0.583952 4_4:+61008211 Msa0692450:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_4:-61010800 None:intergenic
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_4:+61009475 Msa0692450:CDS
TACAAACTCATTCCATGGAA+GGG 0.592326 4_4:-61009393 None:intergenic
GAAGCATCCCTGCTGGAAGA+GGG 0.594071 4_4:+61010825 Msa0692450:three_prime_UTR
GGTAGGAATAAAGGTGTCAC+CGG 0.594798 4_4:-61009139 None:intergenic
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_4:-61009510 None:intergenic
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_4:-61009515 None:intergenic
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_4:-61010335 None:intergenic
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_4:-61009665 None:intergenic
TGGGTTGTAATAATTGTGCC+GGG 0.599839 4_4:+61009999 Msa0692450:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_4:-61010887 None:intergenic
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_4:-61010348 None:intergenic
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_4:-61009526 None:intergenic
AACTTGTGGAAGGCCACCGC+AGG 0.602466 4_4:+61009181 Msa0692450:CDS
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_4:-61009514 None:intergenic
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_4:-61010248 None:intergenic
GCCATGTTCCCATCATAGGT+AGG 0.602990 4_4:-61009156 None:intergenic
CCCCTCAAATTGAGAATCTG+GGG 0.605300 4_4:+61008180 Msa0692450:CDS
ACAACTCAACGGCCTCCTCA+AGG 0.607711 4_4:+61005919 Msa0692450:CDS
ATTCTGTGGACACAATTTGG+TGG 0.607748 4_4:+61005409 Msa0692450:five_prime_UTR
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_4:-61010336 None:intergenic
AACATGGCAAAACTTGTGGA+AGG 0.609196 4_4:+61009171 Msa0692450:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_4:+61009515 Msa0692450:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_4:-61010241 None:intergenic
TCCTACCTATGATGGGAACA+TGG 0.610654 4_4:+61009155 Msa0692450:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_4:-61009670 None:intergenic
TTTGAATCAAATGCGTGCAG+CGG 0.612731 4_4:+61007205 Msa0692450:CDS
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_4:+61009539 Msa0692450:CDS
AATGGAAGTTAGATCATCAG+AGG 0.614061 4_4:+61005708 Msa0692450:exon
GGCATTTCAGATTTGTGACA+TGG 0.614628 4_4:+61007302 Msa0692450:intron
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_4:+61009472 Msa0692450:CDS
TTCACCACCATAAATCTCAC+CGG 0.615230 4_4:-61008722 None:intergenic
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_4:-61010125 None:intergenic
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_4:-61010204 None:intergenic
TCATTTGACCAGCTAACAGG+AGG 0.621119 4_4:-61007611 None:intergenic
AGGAATTGAGGAACAAGGTG+AGG 0.623145 4_4:-61005321 None:intergenic
TTTGTTCATCCATTGTGCTG+TGG 0.623525 4_4:+61005815 Msa0692450:CDS
ACCTAAGGCTTGCATAACCA+AGG 0.627242 4_4:-61008668 None:intergenic
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_4:+61010652 Msa0692450:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_4:+61010651 Msa0692450:three_prime_UTR
GTATATATCACACAACTCAA+CGG 0.629814 4_4:+61005908 Msa0692450:CDS
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_4:-61010334 None:intergenic
AATCATTGTAGACAAACCAA+AGG 0.637419 4_4:+61009469 Msa0692450:CDS
ATTCAGATACTTCGCGAGAG+GGG 0.637675 4_4:+61008212 Msa0692450:CDS
GAACTGCTGTAACTCATCAA+GGG 0.638982 4_4:-61009067 None:intergenic
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_4:+61010705 Msa0692450:three_prime_UTR
ATATAAGGAATTGAGGAACA+AGG 0.641155 4_4:-61005326 None:intergenic
TCTGAAGAAAGGAGATCCCA+GGG 0.644505 4_4:+61008616 Msa0692450:CDS
TGTCAAAGGACATAGACCCT+GGG 0.644623 4_4:-61008632 None:intergenic
TGGTTGTGAAAAGTGTGTGA+AGG 0.647524 4_4:+61005647 Msa0692450:five_prime_UTR
GAAAAGTGGATACTTGACCC+TGG 0.648562 4_4:+61007583 Msa0692450:CDS
CAAACATGTCCACAGCACAA+TGG 0.648618 4_4:-61005824 None:intergenic
TGATTCAGATACTTCGCGAG+AGG 0.649037 4_4:+61008210 Msa0692450:CDS
ATTCCCTTCATGGAGAGAGA+AGG 0.650807 4_4:+61008585 Msa0692450:CDS
TGAAGGTTATGGTGATGAAG+TGG 0.651256 4_4:+61005664 Msa0692450:five_prime_UTR
CTTGCAGGAAGTAGAATGGG+AGG 0.651294 4_4:-61005964 None:intergenic
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_4:+61010772 Msa0692450:three_prime_UTR
ATAACCACCCTCTTCCAGCA+GGG 0.655248 4_4:-61010832 None:intergenic
AATATAACATCTCCTTGAGG+AGG 0.657753 4_4:-61005931 None:intergenic
TAAGTGCCTGGTAATTAACA+CGG 0.657828 4_4:-61008151 None:intergenic
ATGGAAGTTAGATCATCAGA+GGG 0.666260 4_4:+61005709 Msa0692450:CDS
TTGCACTAATGAAGAAGCCG+AGG 0.669813 4_4:+61008301 Msa0692450:CDS
GCATCCCTGCTGGAAGAGGG+TGG 0.670927 4_4:+61010828 Msa0692450:three_prime_UTR
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_4:-61010798 None:intergenic
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_4:-61010749 None:intergenic
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_4:+61010655 Msa0692450:three_prime_UTR
AAGAAGCCGAGGATCTCAAG+CGG 0.678663 4_4:+61008312 Msa0692450:CDS
GCTAACAGGAGGCATCTCCA+GGG 0.682429 4_4:-61007600 None:intergenic
ATTGCATCTGAGATATGAGA+TGG 0.683390 4_4:+61008247 Msa0692450:CDS
TCTATGTCCTTTGACACCGG+AGG 0.698582 4_4:+61008639 Msa0692450:CDS
GCAAATATAACATCTCCTTG+AGG 0.698776 4_4:-61005934 None:intergenic
GTTCCGGAACAACCAATGTG+AGG 0.701296 4_4:-61007347 None:intergenic
GCAGCCGGTGAGATTTATGG+TGG 0.721413 4_4:+61008718 Msa0692450:CDS
GAGTAAATAGATACCTGCGG+TGG 0.724695 4_4:-61009194 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_4:-61010797 None:intergenic
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_4:-61010696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAGAAAGAAAAATATA+AGG - chr4_4:61005344-61005363 None:intergenic 10.0%
!!! TTTAACTTTAAAAGTAATTA+TGG - chr4_4:61006230-61006249 None:intergenic 10.0%
!!! GTTGTTTTTTTTATTTATTT+TGG + chr4_4:61007464-61007483 Msa0692450:intron 10.0%
!!! AATAAGATATATATTTCTTT+TGG - chr4_4:61009283-61009302 None:intergenic 10.0%
!! ATTTAGCAATAATAGTAATA+TGG + chr4_4:61006116-61006135 Msa0692450:intron 15.0%
!!! TAAATGGATTTATTGATTTT+TGG - chr4_4:61006660-61006679 None:intergenic 15.0%
!!! AATTTTCCTTTAAATATGAT+AGG + chr4_4:61006811-61006830 Msa0692450:intron 15.0%
!! ATTATGTATAATACATCAAT+CGG + chr4_4:61007687-61007706 Msa0692450:intron 15.0%
!! TGAAAAGATATACATAAAAA+AGG - chr4_4:61008370-61008389 None:intergenic 15.0%
!!! ATATTTCTTTTGGAAATTTA+GGG - chr4_4:61009273-61009292 None:intergenic 15.0%
!!! TATATTTCTTTTGGAAATTT+AGG - chr4_4:61009274-61009293 None:intergenic 15.0%
!!! ATTTTTATTCACATTCAAGT+GGG - chr4_4:61005241-61005260 None:intergenic 20.0%
!! AAGAAAAATATAAGGAATTG+AGG - chr4_4:61005336-61005355 None:intergenic 20.0%
!! TTGCTAAATTAAATCATATG+TGG - chr4_4:61006105-61006124 None:intergenic 20.0%
!! ATGGATTTAATGTATATTCA+CGG + chr4_4:61006135-61006154 Msa0692450:intron 20.0%
!! TCTAATAAAAACACAATGTT+AGG - chr4_4:61006322-61006341 None:intergenic 20.0%
!!! AACATTGTGTTTTTATTAGA+TGG + chr4_4:61006322-61006341 Msa0692450:intron 20.0%
!!! AATAAATTTCTTTTCCCAAA+GGG - chr4_4:61006398-61006417 None:intergenic 20.0%
!!! AAATAAATTTCTTTTCCCAA+AGG - chr4_4:61006399-61006418 None:intergenic 20.0%
!!! CAACAATAGTTTAAAATAAG+TGG - chr4_4:61006736-61006755 None:intergenic 20.0%
!!! AAAGTACCTATCATATTTAA+AGG - chr4_4:61006820-61006839 None:intergenic 20.0%
!! ACATAAGTATGTGTAATATT+GGG - chr4_4:61006968-61006987 None:intergenic 20.0%
!! AACATAAGTATGTGTAATAT+TGG - chr4_4:61006969-61006988 None:intergenic 20.0%
!! ATATAATAGGAATAAAGAAG+TGG - chr4_4:61007252-61007271 None:intergenic 20.0%
!! ATTGAAGCTTATCATATAAT+AGG - chr4_4:61007265-61007284 None:intergenic 20.0%
!!! TTTTTTATTTATTTTGGCAG+TGG + chr4_4:61007470-61007489 Msa0692450:intron 20.0%
!! TTATGTATAATACATCAATC+GGG + chr4_4:61007688-61007707 Msa0692450:intron 20.0%
!!! AAAAGTACAAGTTTATGATA+TGG + chr4_4:61007856-61007875 Msa0692450:intron 20.0%
!!! TAGTATTTTAGCAACTAAAA+TGG + chr4_4:61007887-61007906 Msa0692450:intron 20.0%
!! ATATGTACTACTGAAAATAA+GGG - chr4_4:61008001-61008020 None:intergenic 20.0%
!! TATATGTACTACTGAAAATA+AGG - chr4_4:61008002-61008021 None:intergenic 20.0%
!! TCAATACTATAAACAAAAAG+GGG - chr4_4:61008813-61008832 None:intergenic 20.0%
!! GTCAATACTATAAACAAAAA+GGG - chr4_4:61008814-61008833 None:intergenic 20.0%
!! TGTCAATACTATAAACAAAA+AGG - chr4_4:61008815-61008834 None:intergenic 20.0%
!!! TTTACTTTAGGTTAAAAAAG+AGG + chr4_4:61009035-61009054 Msa0692450:intron 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG + chr4_4:61009325-61009344 Msa0692450:CDS 20.0%
!!! TTTTGTATACATGATTTTGT+AGG + chr4_4:61009694-61009713 Msa0692450:three_prime_UTR 20.0%
!! TTATACAACTATACTGAATT+TGG - chr4_4:61009813-61009832 None:intergenic 20.0%
!! TGTAATGAAATATATAGACA+CGG + chr4_4:61010539-61010558 Msa0692450:intron 20.0%
!!! AATTTTCTTTCTAGTTAACC+TGG + chr4_4:61005077-61005096 Msa0692450:five_prime_UTR 25.0%
!! CATTTTTATTCACATTCAAG+TGG - chr4_4:61005242-61005261 None:intergenic 25.0%
!! TTGCAGATTTGTGTTAATTT+TGG + chr4_4:61005627-61005646 Msa0692450:intron 25.0%
! AGTAAATCCAGTAAAGAAAT+TGG - chr4_4:61005884-61005903 None:intergenic 25.0%
!! CAAACATTTTAAATGATCTG+AGG - chr4_4:61006200-61006219 None:intergenic 25.0%
! GTTTATCAACACATACATTA+TGG - chr4_4:61006376-61006395 None:intergenic 25.0%
!!! TTTTCTGCTTGTTATATAGT+AGG + chr4_4:61006428-61006447 Msa0692450:intron 25.0%
! GATGGTCAATATCAATTAAT+TGG - chr4_4:61006517-61006536 None:intergenic 25.0%
!!! ATATTGACCATCATGTTTTT+TGG + chr4_4:61006525-61006544 Msa0692450:intron 25.0%
!!! GATTTTTGGTTAGAATCTAA+TGG - chr4_4:61006646-61006665 None:intergenic 25.0%
! CATAAGTATGTGTAATATTG+GGG - chr4_4:61006967-61006986 None:intergenic 25.0%
!!! ATGCAAGATAGTTTTACATA+AGG + chr4_4:61007004-61007023 Msa0692450:intron 25.0%
!!! TGCAAGATAGTTTTACATAA+GGG + chr4_4:61007005-61007024 Msa0692450:intron 25.0%
! ACAAAATACTTATACGTAGA+TGG + chr4_4:61007042-61007061 Msa0692450:intron 25.0%
! CAAAATACTTATACGTAGAT+GGG + chr4_4:61007043-61007062 Msa0692450:intron 25.0%
! CAATGTTTAATTACCAGATT+TGG + chr4_4:61007281-61007300 Msa0692450:intron 25.0%
!! AACTTGATAAGAAATCCTTT+TGG + chr4_4:61007367-61007386 Msa0692450:CDS 25.0%
!! ACTTGATAAGAAATCCTTTT+GGG + chr4_4:61007368-61007387 Msa0692450:CDS 25.0%
! CATAACAAATGATATACCTA+CGG - chr4_4:61007398-61007417 None:intergenic 25.0%
!! CTTTTCCTAGTAAACTTTTT+GGG - chr4_4:61007569-61007588 None:intergenic 25.0%
!! ACTTTTCCTAGTAAACTTTT+TGG - chr4_4:61007570-61007589 None:intergenic 25.0%
! AAAAAGTTTACTAGGAAAAG+TGG + chr4_4:61007569-61007588 Msa0692450:CDS 25.0%
!!! GTCAAATGAAAAGTATTACT+TGG + chr4_4:61007625-61007644 Msa0692450:CDS 25.0%
! TTAAAGTTTGATACAGTGAT+TGG + chr4_4:61007730-61007749 Msa0692450:intron 25.0%
! TGGTTAATGATTCTTTGATA+TGG + chr4_4:61007750-61007769 Msa0692450:intron 25.0%
!! TTTAGAGTTATTAGCAGATA+TGG + chr4_4:61007790-61007809 Msa0692450:intron 25.0%
!!! AACAATGATAAAGTGCTTTT+TGG - chr4_4:61007942-61007961 None:intergenic 25.0%
! TAAGTTTCTGTAGATCAATT+GGG - chr4_4:61008127-61008146 None:intergenic 25.0%
!! TATATCTTTTCATGAGCAAT+AGG + chr4_4:61008378-61008397 Msa0692450:intron 25.0%
! ATTCCACTTTACTTTACTTT+AGG + chr4_4:61009023-61009042 Msa0692450:intron 25.0%
! TAACCTAAAGTAAAGTAAAG+TGG - chr4_4:61009029-61009048 None:intergenic 25.0%
!! TTAGGTTAAAAAAGAGGTAT+TGG + chr4_4:61009041-61009060 Msa0692450:intron 25.0%
! ATCTAATATAGAAGCTATTC+TGG + chr4_4:61009234-61009253 Msa0692450:intron 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG - chr4_4:61009324-61009343 None:intergenic 25.0%
! GAAATATATGTTCCATATAG+AGG + chr4_4:61009743-61009762 Msa0692450:three_prime_UTR 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG + chr4_4:61010178-61010197 Msa0692450:three_prime_UTR 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4_4:61010254-61010273 None:intergenic 25.0%
!! TTTCTTGATAATATTCCAAC+TGG + chr4_4:61010253-61010272 Msa0692450:three_prime_UTR 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4_4:61010624-61010643 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4_4:61010625-61010644 None:intergenic 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4_4:61010631-61010650 Msa0692450:intron 25.0%
!!! CAGTTTTTTAATTGTGTGCA+TGG - chr4_4:61005135-61005154 None:intergenic 30.0%
ATGGAAAGAAAGGATCAAAT+CGG - chr4_4:61005290-61005309 None:intergenic 30.0%
ATATAAGGAATTGAGGAACA+AGG - chr4_4:61005329-61005348 None:intergenic 30.0%
GAATAAACCAAACACGAAAA+CGG - chr4_4:61005792-61005811 None:intergenic 30.0%
GTATATATCACACAACTCAA+CGG + chr4_4:61005908-61005927 Msa0692450:CDS 30.0%
! AGATAGAAAAACTAACTTGC+AGG - chr4_4:61005982-61006001 None:intergenic 30.0%
!! AATGTTTTTGTTTGCTTGAG+TGG + chr4_4:61006023-61006042 Msa0692450:intron 30.0%
! TATGTGTTGATAAACCCTTT+GGG + chr4_4:61006381-61006400 Msa0692450:intron 30.0%
CAAAGCAAATAATCTCTAAC+AGG - chr4_4:61006555-61006574 None:intergenic 30.0%
AGACTTCACTCTAAACTAAA+TGG - chr4_4:61006676-61006695 None:intergenic 30.0%
!!! ATAAGTGGATCCACTTTTTT+GGG - chr4_4:61006721-61006740 None:intergenic 30.0%
!!! AATAAGTGGATCCACTTTTT+TGG - chr4_4:61006722-61006741 None:intergenic 30.0%
AAATTCTACTGAACAGCTAA+AGG - chr4_4:61006796-61006815 None:intergenic 30.0%
GCAGGAAATTATACTAGTAA+TGG + chr4_4:61007155-61007174 Msa0692450:intron 30.0%
TAATAGGAATAAAGAAGTGG+TGG - chr4_4:61007249-61007268 None:intergenic 30.0%
AAGGATTTCTTATCAAGTTC+CGG - chr4_4:61007366-61007385 None:intergenic 30.0%
GTACAAGTTTATGATATGGA+TGG + chr4_4:61007860-61007879 Msa0692450:intron 30.0%
TACTACTGAAAATAAGGGAA+GGG - chr4_4:61007996-61008015 None:intergenic 30.0%
CTAAGTTTCTGTAGATCAAT+TGG - chr4_4:61008128-61008147 None:intergenic 30.0%
CAATTGATCTACAGAAACTT+AGG + chr4_4:61008126-61008145 Msa0692450:CDS 30.0%
! TAAAAAAGGCATAGCAAAAC+AGG - chr4_4:61008356-61008375 None:intergenic 30.0%
GCAACACAAATTATAAACGA+AGG - chr4_4:61008405-61008424 None:intergenic 30.0%
!! GTTGCATGATTTGTTGAATT+TGG + chr4_4:61008420-61008439 Msa0692450:intron 30.0%
! ATTAAGAGTCTTGTGTTCAA+AGG + chr4_4:61008487-61008506 Msa0692450:intron 30.0%
! AATGGTGAACTCACAATTTT+TGG - chr4_4:61008778-61008797 None:intergenic 30.0%
ACTATAAACAAAAAGGGGAA+GGG - chr4_4:61008808-61008827 None:intergenic 30.0%
TACTATAAACAAAAAGGGGA+AGG - chr4_4:61008809-61008828 None:intergenic 30.0%
GGGAGGATACAAATTATAAA+TGG - chr4_4:61008899-61008918 None:intergenic 30.0%
TTAGGATGAAGAAATGCATA+AGG - chr4_4:61008978-61008997 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG + chr4_4:61009368-61009387 Msa0692450:CDS 30.0%
AATCATTGTAGACAAACCAA+AGG + chr4_4:61009469-61009488 Msa0692450:CDS 30.0%
! ATGATTTTGTAGGAAACCAT+GGG + chr4_4:61009704-61009723 Msa0692450:three_prime_UTR 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG - chr4_4:61009723-61009742 None:intergenic 30.0%
CATGGGGAAAAAAGAAAAAT+AGG + chr4_4:61009721-61009740 Msa0692450:three_prime_UTR 30.0%
ACAACTATACTGAATTTGGT+GGG - chr4_4:61009809-61009828 None:intergenic 30.0%
TACAACTATACTGAATTTGG+TGG - chr4_4:61009810-61009829 None:intergenic 30.0%
AACAACAGTATGTCATTAAC+TGG + chr4_4:61010139-61010158 Msa0692450:three_prime_UTR 30.0%
CAAAATACTTCTAATCTTGC+AGG - chr4_4:61010176-61010195 None:intergenic 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4_4:61010251-61010270 None:intergenic 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4_4:61010473-61010492 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4_4:61010474-61010493 None:intergenic 30.0%
TATTCTCATTACCATCATGT+TGG + chr4_4:61010596-61010615 Msa0692450:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4_4:61010772-61010791 Msa0692450:three_prime_UTR 30.0%
AATTGTGTGCATGGATTCAA+AGG - chr4_4:61005126-61005145 None:intergenic 35.0%
TCGGAGAAAAATCACAAAGA+AGG - chr4_4:61005271-61005290 None:intergenic 35.0%
TCCTTTCTTTCCATTCTCAT+TGG + chr4_4:61005296-61005315 Msa0692450:five_prime_UTR 35.0%
TCCAATGAGAATGGAAAGAA+AGG - chr4_4:61005300-61005319 None:intergenic 35.0%
TTGAAGAGCTTCAAATTCTG+TGG + chr4_4:61005395-61005414 Msa0692450:five_prime_UTR 35.0%
CAAATTCTGTGGACACAATT+TGG + chr4_4:61005406-61005425 Msa0692450:five_prime_UTR 35.0%
! AATTTGAAGCTGGTGATTGA+GGG - chr4_4:61005460-61005479 None:intergenic 35.0%
ACCAGCTTCAAATTCAATTC+TGG + chr4_4:61005466-61005485 Msa0692450:five_prime_UTR 35.0%
CCAGCTTCAAATTCAATTCT+GGG + chr4_4:61005467-61005486 Msa0692450:five_prime_UTR 35.0%
CTTCAAATTCAATTCTGGGT+CGG + chr4_4:61005471-61005490 Msa0692450:five_prime_UTR 35.0%
! AAGTGAATCTCACTGTTTTG+AGG - chr4_4:61005516-61005535 None:intergenic 35.0%
TACATTGCAAAGTGACTCTA+TGG - chr4_4:61005573-61005592 None:intergenic 35.0%
! TGAAAAGTGTGTGAAGGTTA+TGG + chr4_4:61005653-61005672 Msa0692450:five_prime_UTR 35.0%
TGAAGTGTGTGACAAAGAAA+TGG + chr4_4:61005690-61005709 Msa0692450:exon 35.0%
AATGGAAGTTAGATCATCAG+AGG + chr4_4:61005708-61005727 Msa0692450:exon 35.0%
ATGGAAGTTAGATCATCAGA+GGG + chr4_4:61005709-61005728 Msa0692450:CDS 35.0%
TGGCATTCCAATTTCTTTAC+TGG + chr4_4:61005874-61005893 Msa0692450:CDS 35.0%
AATATAACATCTCCTTGAGG+AGG - chr4_4:61005934-61005953 None:intergenic 35.0%
GCAAATATAACATCTCCTTG+AGG - chr4_4:61005937-61005956 None:intergenic 35.0%
! TAACTTGCAGGAAGTAGAAT+GGG - chr4_4:61005970-61005989 None:intergenic 35.0%
ATCATGCTTAGCTGAATGTT+GGG + chr4_4:61006350-61006369 Msa0692450:intron 35.0%
! GTATGTGTTGATAAACCCTT+TGG + chr4_4:61006380-61006399 Msa0692450:intron 35.0%
GTAGATTTGTGTGAAGAAAC+AGG + chr4_4:61006454-61006473 Msa0692450:intron 35.0%
ATTTGTGTGAAGAAACAGGT+AGG + chr4_4:61006458-61006477 Msa0692450:intron 35.0%
AGGAAGTCCAAAAAACATGA+TGG - chr4_4:61006535-61006554 None:intergenic 35.0%
!! ATTTGCTTTGTTGCGTTTTG+TGG + chr4_4:61006565-61006584 Msa0692450:intron 35.0%
GGGGTACACTAAAAAGATTA+GGG - chr4_4:61006701-61006720 None:intergenic 35.0%
TGGGGTACACTAAAAAGATT+AGG - chr4_4:61006702-61006721 None:intergenic 35.0%
TTTAGTGTACCCCAAAAAAG+TGG + chr4_4:61006708-61006727 Msa0692450:intron 35.0%
!!! TAAGTGGATCCACTTTTTTG+GGG - chr4_4:61006720-61006739 None:intergenic 35.0%
TACATACAAGGACTCATACA+GGG - chr4_4:61006885-61006904 None:intergenic 35.0%
TTACATACAAGGACTCATAC+AGG - chr4_4:61006886-61006905 None:intergenic 35.0%
TGATGGGGATATTACATACA+AGG - chr4_4:61006897-61006916 None:intergenic 35.0%
ATTTGCTTTCTGTTAAGTGC+TGG - chr4_4:61006926-61006945 None:intergenic 35.0%
! TACTTATACGTAGATGGGTT+TGG + chr4_4:61007048-61007067 Msa0692450:intron 35.0%
! TAAAGAAGTGGTGGAAGAAT+AGG - chr4_4:61007240-61007259 None:intergenic 35.0%
! CAAATCTGAAATGCCAAATC+TGG - chr4_4:61007297-61007316 None:intergenic 35.0%
GAGTTCCCAAAAAGTTTACT+AGG + chr4_4:61007561-61007580 Msa0692450:CDS 35.0%
! TTTTCATTTGACCAGCTAAC+AGG - chr4_4:61007617-61007636 None:intergenic 35.0%
!! TGAAAAGTATTACTTGGAGC+AGG + chr4_4:61007631-61007650 Msa0692450:CDS 35.0%
ACTACTGAAAATAAGGGAAG+GGG - chr4_4:61007995-61008014 None:intergenic 35.0%
GTACTACTGAAAATAAGGGA+AGG - chr4_4:61007997-61008016 None:intergenic 35.0%
TAAGTGCCTGGTAATTAACA+CGG - chr4_4:61008154-61008173 None:intergenic 35.0%
! ATTGCATCTGAGATATGAGA+TGG + chr4_4:61008247-61008266 Msa0692450:CDS 35.0%
GTAATGATCTGACAAATGAG+AGG + chr4_4:61008515-61008534 Msa0692450:intron 35.0%
AGGAAATAGTGTCTGAAGAA+AGG + chr4_4:61008605-61008624 Msa0692450:CDS 35.0%
!! AATCCAAGTGCTGAAAAATG+GGG - chr4_4:61008919-61008938 None:intergenic 35.0%
!! CAATCCAAGTGCTGAAAAAT+GGG - chr4_4:61008920-61008939 None:intergenic 35.0%
!! TCAATCCAAGTGCTGAAAAA+TGG - chr4_4:61008921-61008940 None:intergenic 35.0%
GCATTTCTTCATCCTAATCA+TGG + chr4_4:61008981-61009000 Msa0692450:intron 35.0%
AACAAGCAGTAACCATGATT+AGG - chr4_4:61008996-61009015 None:intergenic 35.0%
! CCATCTGTGATGAATGATTT+TGG - chr4_4:61009092-61009111 None:intergenic 35.0%
CCAAAATCATTCATCACAGA+TGG + chr4_4:61009089-61009108 Msa0692450:CDS 35.0%
! TGCTTTGGATTTCATGGTTT+CGG + chr4_4:61009113-61009132 Msa0692450:CDS 35.0%
ACCTTTATTCCTACCTATGA+TGG + chr4_4:61009147-61009166 Msa0692450:CDS 35.0%
CCTTTATTCCTACCTATGAT+GGG + chr4_4:61009148-61009167 Msa0692450:CDS 35.0%
! TATCTTATTAGCTCTCATGC+AGG + chr4_4:61009294-61009313 Msa0692450:intron 35.0%
AAAAGTCCATCTTATTGGAC+CGG + chr4_4:61009330-61009349 Msa0692450:CDS 35.0%
TACAAACTCATTCCATGGAA+GGG - chr4_4:61009396-61009415 None:intergenic 35.0%
ACAATGATTCGACGATAAGT+CGG - chr4_4:61009458-61009477 None:intergenic 35.0%
TAGAAATAATCCTCCTCCTT+TGG - chr4_4:61009488-61009507 None:intergenic 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG + chr4_4:61009539-61009558 Msa0692450:CDS 35.0%
! CTTACTTGAGTAGAGTTTTG+AGG - chr4_4:61009566-61009585 None:intergenic 35.0%
AGATTGCTCTTGCATACTTA+TGG - chr4_4:61009635-61009654 None:intergenic 35.0%
ATGCAAGAGCAATCTGAAAA+TGG + chr4_4:61009640-61009659 Msa0692450:three_prime_UTR 35.0%
! CATGATTTTGTAGGAAACCA+TGG + chr4_4:61009703-61009722 Msa0692450:three_prime_UTR 35.0%
! TGATTTTGTAGGAAACCATG+GGG + chr4_4:61009705-61009724 Msa0692450:three_prime_UTR 35.0%
TTTGGTGGGGGAAAAAATAA+GGG - chr4_4:61009795-61009814 None:intergenic 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG - chr4_4:61009796-61009815 None:intergenic 35.0%
! AACTATACTGAATTTGGTGG+GGG - chr4_4:61009807-61009826 None:intergenic 35.0%
! CAACTATACTGAATTTGGTG+GGG - chr4_4:61009808-61009827 None:intergenic 35.0%
! ATGGGTTGTAATAATTGTGC+CGG + chr4_4:61009998-61010017 Msa0692450:three_prime_UTR 35.0%
GGATGAAAAAACTGAACACT+TGG - chr4_4:61010107-61010126 None:intergenic 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG - chr4_4:61010128-61010147 None:intergenic 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4_4:61010368-61010387 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG - chr4_4:61010403-61010422 None:intergenic 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4_4:61010475-61010494 Msa0692450:intron 35.0%
TTATCACACAACCATTGAAC+AGG - chr4_4:61010645-61010664 None:intergenic 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4_4:61010705-61010724 Msa0692450:three_prime_UTR 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4_4:61010802-61010821 None:intergenic 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4_4:61010803-61010822 None:intergenic 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4_4:61010803-61010822 Msa0692450:three_prime_UTR 35.0%
GTAGATGAATTGAGAGATCC+AGG - chr4_4:61005098-61005117 None:intergenic 40.0%
GTGCATGGATTCAAAGGTTT+GGG - chr4_4:61005120-61005139 None:intergenic 40.0%
TGTGCATGGATTCAAAGGTT+TGG - chr4_4:61005121-61005140 None:intergenic 40.0%
ATTCTGTGGACACAATTTGG+TGG + chr4_4:61005409-61005428 Msa0692450:five_prime_UTR 40.0%
! GAATTTGAAGCTGGTGATTG+AGG - chr4_4:61005461-61005480 None:intergenic 40.0%
! CCCAGAATTGAATTTGAAGC+TGG - chr4_4:61005470-61005489 None:intergenic 40.0%
TGCAAAGTGACTCTATGGAA+AGG - chr4_4:61005568-61005587 None:intergenic 40.0%
CAATGTACTTCTTACGTACG+AGG + chr4_4:61005586-61005605 Msa0692450:intron 40.0%
! TGGTTGTGAAAAGTGTGTGA+AGG + chr4_4:61005647-61005666 Msa0692450:five_prime_UTR 40.0%
! TGAAGGTTATGGTGATGAAG+TGG + chr4_4:61005664-61005683 Msa0692450:five_prime_UTR 40.0%
TTTGTTCATCCATTGTGCTG+TGG + chr4_4:61005815-61005834 Msa0692450:CDS 40.0%
TTGTGACTGTGAGTGAACTA+TGG + chr4_4:61005854-61005873 Msa0692450:CDS 40.0%
! CTAACTTGCAGGAAGTAGAA+TGG - chr4_4:61005971-61005990 None:intergenic 40.0%
!!! AGTGGTTTTGTGATGTGGTT+TGG + chr4_4:61006041-61006060 Msa0692450:intron 40.0%
GGTTTGGAAATGTGTAGCTT+TGG + chr4_4:61006057-61006076 Msa0692450:intron 40.0%
GATCATGCTTAGCTGAATGT+TGG + chr4_4:61006349-61006368 Msa0692450:intron 40.0%
!! ATAACAGCCAAGTACTGAGT+AGG + chr4_4:61006596-61006615 Msa0692450:intron 40.0%
!! TAACAGCCAAGTACTGAGTA+GGG + chr4_4:61006597-61006616 Msa0692450:intron 40.0%
ATCTATCCCTACTCAGTACT+TGG - chr4_4:61006606-61006625 None:intergenic 40.0%
CTCATACAGGGTCATTGAAA+TGG - chr4_4:61006873-61006892 None:intergenic 40.0%
!! TAAGTGCTGGAGAGATTGAT+GGG - chr4_4:61006913-61006932 None:intergenic 40.0%
!! TTAAGTGCTGGAGAGATTGA+TGG - chr4_4:61006914-61006933 None:intergenic 40.0%
!! TTTCTAAGAGTGTCCTGCAA+TGG + chr4_4:61007179-61007198 Msa0692450:CDS 40.0%
!! TTCTAAGAGTGTCCTGCAAT+GGG + chr4_4:61007180-61007199 Msa0692450:CDS 40.0%
TTTGAATCAAATGCGTGCAG+CGG + chr4_4:61007205-61007224 Msa0692450:CDS 40.0%
GGCATTTCAGATTTGTGACA+TGG + chr4_4:61007302-61007321 Msa0692450:intron 40.0%
TACGTAGCTTAACCCAAAGT+TGG + chr4_4:61007914-61007933 Msa0692450:intron 40.0%
!! TGCTTTTTGGCACCAACTTT+GGG - chr4_4:61007929-61007948 None:intergenic 40.0%
ATAAGGGAAGGGGGAAATAT+AGG - chr4_4:61007985-61008004 None:intergenic 40.0%
CTACTGAAAATAAGGGAAGG+GGG - chr4_4:61007994-61008013 None:intergenic 40.0%
ACCTTGTGTTTGGCAAAAAG+CGG - chr4_4:61008059-61008078 None:intergenic 40.0%
TTGGGAGACCATTATTTGCT+AGG - chr4_4:61008109-61008128 None:intergenic 40.0%
ACCCCTCAAATTGAGAATCT+GGG + chr4_4:61008179-61008198 Msa0692450:CDS 40.0%
TCAGATATGCATTCCCTTCA+TGG + chr4_4:61008575-61008594 Msa0692450:intron 40.0%
TTTCCTTCTCTCTCCATGAA+GGG - chr4_4:61008591-61008610 None:intergenic 40.0%
ATTTCCTTCTCTCTCCATGA+AGG - chr4_4:61008592-61008611 None:intergenic 40.0%
CAATGTAAATCTGTGTCTCC+CGG - chr4_4:61008699-61008718 None:intergenic 40.0%
ACACAGATTTACATTGCAGC+CGG + chr4_4:61008703-61008722 Msa0692450:CDS 40.0%
TTCACCACCATAAATCTCAC+CGG - chr4_4:61008725-61008744 None:intergenic 40.0%
AAGGGGAAGGGAGATATAAA+TGG - chr4_4:61008796-61008815 None:intergenic 40.0%
CACAAGCTAGAATCATTCAG+TGG - chr4_4:61008861-61008880 None:intergenic 40.0%
AGCACTTGGATTGAAAGTTG+TGG + chr4_4:61008927-61008946 Msa0692450:intron 40.0%
!! GAAAGTTGTGGCTCTGAAAA+TGG + chr4_4:61008939-61008958 Msa0692450:intron 40.0%
GAACTGCTGTAACTCATCAA+GGG - chr4_4:61009070-61009089 None:intergenic 40.0%
CCCATCATAGGTAGGAATAA+AGG - chr4_4:61009151-61009170 None:intergenic 40.0%
! TTTTGCCATGTTCCCATCAT+AGG - chr4_4:61009163-61009182 None:intergenic 40.0%
AACATGGCAAAACTTGTGGA+AGG + chr4_4:61009171-61009190 Msa0692450:CDS 40.0%
CGTGAGTAAATAGATACCTG+CGG - chr4_4:61009200-61009219 None:intergenic 40.0%
! GCAATTGTACAAGCCTTTTC+CGG - chr4_4:61009352-61009371 None:intergenic 40.0%
ATCAAAATGGAACCCTTCCA+TGG + chr4_4:61009381-61009400 Msa0692450:CDS 40.0%
CTACAAACTCATTCCATGGA+AGG - chr4_4:61009397-61009416 None:intergenic 40.0%
GCATCTACAAACTCATTCCA+TGG - chr4_4:61009401-61009420 None:intergenic 40.0%
ACAGGTTCACGAAAAGAGAA+TGG + chr4_4:61009427-61009446 Msa0692450:CDS 40.0%
CAGGTTCACGAAAAGAGAAT+GGG + chr4_4:61009428-61009447 Msa0692450:CDS 40.0%
CATTGTAGACAAACCAAAGG+AGG + chr4_4:61009472-61009491 Msa0692450:CDS 40.0%
GCTCTTGCATACTTATGGTT+GGG - chr4_4:61009630-61009649 None:intergenic 40.0%
TGCTCTTGCATACTTATGGT+TGG - chr4_4:61009631-61009650 None:intergenic 40.0%
CATCTTTGCAAGCCTCTATA+TGG - chr4_4:61009758-61009777 None:intergenic 40.0%
! TTTTCCACTTTACAAGCTGC+AGG + chr4_4:61009969-61009988 Msa0692450:three_prime_UTR 40.0%
TGGGTTGTAATAATTGTGCC+GGG + chr4_4:61009999-61010018 Msa0692450:three_prime_UTR 40.0%
! CCATGATCAAGTTTTTGACC+CGG - chr4_4:61010020-61010039 None:intergenic 40.0%
ATCGCAAATGTAGCCTTCTA+CGG - chr4_4:61010081-61010100 None:intergenic 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4_4:61010187-61010206 Msa0692450:three_prime_UTR 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4_4:61010244-61010263 None:intergenic 40.0%
AGAATTGGAACTAGACCAGT+TGG - chr4_4:61010271-61010290 None:intergenic 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4_4:61010286-61010305 None:intergenic 40.0%
AAGGGGAAAAAATGATCCTG+CGG - chr4_4:61010320-61010339 None:intergenic 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4_4:61010338-61010357 None:intergenic 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4_4:61010339-61010358 None:intergenic 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4_4:61010801-61010820 None:intergenic 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4_4:61010871-61010890 Msa0692450:three_prime_UTR 40.0%
AGGTGAGGATCCAATGAGAA+TGG - chr4_4:61005309-61005328 None:intergenic 45.0%
AGGAATTGAGGAACAAGGTG+AGG - chr4_4:61005324-61005343 None:intergenic 45.0%
AAGCTGCTCCTTTGATTCCA+AGG + chr4_4:61005764-61005783 Msa0692450:CDS 45.0%
AAACGGCTCCTTGGAATCAA+AGG - chr4_4:61005775-61005794 None:intergenic 45.0%
CAAACATGTCCACAGCACAA+TGG - chr4_4:61005827-61005846 None:intergenic 45.0%
CATTGTGCTGTGGACATGTT+TGG + chr4_4:61005825-61005844 Msa0692450:CDS 45.0%
!!! GCTTGAGTGGTTTTGTGATG+TGG + chr4_4:61006036-61006055 Msa0692450:intron 45.0%
GTACAGTGGAGAATCTGGAT+GGG - chr4_4:61006769-61006788 None:intergenic 45.0%
TGTACAGTGGAGAATCTGGA+TGG - chr4_4:61006770-61006789 None:intergenic 45.0%
GAGTTGTACAGTGGAGAATC+TGG - chr4_4:61006774-61006793 None:intergenic 45.0%
CAGCTAAAGGAGTTGTACAG+TGG - chr4_4:61006783-61006802 None:intergenic 45.0%
!! AAGTGCTGGAGAGATTGATG+GGG - chr4_4:61006912-61006931 None:intergenic 45.0%
! ACGTAGATGGGTTTGGTAGA+CGG + chr4_4:61007055-61007074 Msa0692450:intron 45.0%
CTGCAAGATTTCAGCTGACA+AGG - chr4_4:61007139-61007158 None:intergenic 45.0%
CTTGTCAGCTGAAATCTTGC+AGG + chr4_4:61007137-61007156 Msa0692450:intron 45.0%
!! TCTAAGAGTGTCCTGCAATG+GGG + chr4_4:61007181-61007200 Msa0692450:CDS 45.0%
TTGATTCAAACCCCCATTGC+AGG - chr4_4:61007195-61007214 None:intergenic 45.0%
GTGACATGGTGACAATTGCT+CGG + chr4_4:61007316-61007335 Msa0692450:CDS 45.0%
! TCGGCTTTTGAACCTCACAT+TGG + chr4_4:61007335-61007354 Msa0692450:CDS 45.0%
! GAACCTCACATTGGTTGTTC+CGG + chr4_4:61007344-61007363 Msa0692450:CDS 45.0%
!!! TTATTTTGGCAGTGGCTTCG+AGG + chr4_4:61007478-61007497 Msa0692450:intron 45.0%
GAAAAGTGGATACTTGACCC+TGG + chr4_4:61007583-61007602 Msa0692450:CDS 45.0%
TCATTTGACCAGCTAACAGG+AGG - chr4_4:61007614-61007633 None:intergenic 45.0%
!! GTGCTTTTTGGCACCAACTT+TGG - chr4_4:61007930-61007949 None:intergenic 45.0%
!!! ACCGCTTTTTGCCAAACACA+AGG + chr4_4:61008055-61008074 Msa0692450:CDS 45.0%
! GCTTTTTGCCAAACACAAGG+TGG + chr4_4:61008058-61008077 Msa0692450:CDS 45.0%
GATGCACGCCTAGCAAATAA+TGG + chr4_4:61008098-61008117 Msa0692450:CDS 45.0%
! TAGGTGCCGTGTTAATTACC+AGG + chr4_4:61008145-61008164 Msa0692450:CDS 45.0%
CACCCCTCAAATTGAGAATC+TGG + chr4_4:61008178-61008197 Msa0692450:CDS 45.0%
CCCCAGATTCTCAATTTGAG+GGG - chr4_4:61008183-61008202 None:intergenic 45.0%
CCCCTCAAATTGAGAATCTG+GGG + chr4_4:61008180-61008199 Msa0692450:CDS 45.0%
GCCCCAGATTCTCAATTTGA+GGG - chr4_4:61008184-61008203 None:intergenic 45.0%
TGCCCCAGATTCTCAATTTG+AGG - chr4_4:61008185-61008204 None:intergenic 45.0%
TGATTCAGATACTTCGCGAG+AGG + chr4_4:61008210-61008229 Msa0692450:CDS 45.0%
GATTCAGATACTTCGCGAGA+GGG + chr4_4:61008211-61008230 Msa0692450:CDS 45.0%
ATTCAGATACTTCGCGAGAG+GGG + chr4_4:61008212-61008231 Msa0692450:CDS 45.0%
CTCAGATGCAATGCCACAAA+AGG - chr4_4:61008239-61008258 None:intergenic 45.0%
GAGATATGAGATGGACATGC+TGG + chr4_4:61008256-61008275 Msa0692450:CDS 45.0%
! GCTTTCTCAGGTTGTACTCT+TGG + chr4_4:61008278-61008297 Msa0692450:CDS 45.0%
TTGCACTAATGAAGAAGCCG+AGG + chr4_4:61008301-61008320 Msa0692450:CDS 45.0%
ATTCCCTTCATGGAGAGAGA+AGG + chr4_4:61008585-61008604 Msa0692450:CDS 45.0%
TCTGAAGAAAGGAGATCCCA+GGG + chr4_4:61008616-61008635 Msa0692450:CDS 45.0%
TGTCAAAGGACATAGACCCT+GGG - chr4_4:61008635-61008654 None:intergenic 45.0%
ACCTAAGGCTTGCATAACCA+AGG - chr4_4:61008671-61008690 None:intergenic 45.0%
!! TGCAAGCCTTAGGTTTTGAC+CGG + chr4_4:61008677-61008696 Msa0692450:CDS 45.0%
ATTGCAGCCGGTGAGATTTA+TGG + chr4_4:61008715-61008734 Msa0692450:CDS 45.0%
!! GTTGTGGCTCTGAAAATGGT+TGG + chr4_4:61008943-61008962 Msa0692450:intron 45.0%
GGAACTGCTGTAACTCATCA+AGG - chr4_4:61009071-61009090 None:intergenic 45.0%
TTCATCACAGATGGCTGCTT+TGG + chr4_4:61009098-61009117 Msa0692450:CDS 45.0%
! GATGGCTGCTTTGGATTTCA+TGG + chr4_4:61009107-61009126 Msa0692450:CDS 45.0%
GATTTCATGGTTTCGGTAGC+CGG + chr4_4:61009120-61009139 Msa0692450:CDS 45.0%
!! GGTAGGAATAAAGGTGTCAC+CGG - chr4_4:61009142-61009161 None:intergenic 45.0%
! TCCTACCTATGATGGGAACA+TGG + chr4_4:61009155-61009174 Msa0692450:CDS 45.0%
TGGGAACATGGCAAAACTTG+TGG + chr4_4:61009167-61009186 Msa0692450:CDS 45.0%
GAGTAAATAGATACCTGCGG+TGG - chr4_4:61009197-61009216 None:intergenic 45.0%
TAGCTCTCATGCAGGTATTC+CGG + chr4_4:61009302-61009321 Msa0692450:intron 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG - chr4_4:61009339-61009358 None:intergenic 45.0%
CCATCTTATTGGACCGGAAA+AGG + chr4_4:61009336-61009355 Msa0692450:CDS 45.0%
TGTAGACAAACCAAAGGAGG+AGG + chr4_4:61009475-61009494 Msa0692450:CDS 45.0%
CACACTTTGTTCCCTCACAA+AGG - chr4_4:61009529-61009548 None:intergenic 45.0%
! CTCTAAGAACTTATGCCCGA+GGG - chr4_4:61009672-61009691 None:intergenic 45.0%
! TCTCTAAGAACTTATGCCCG+AGG - chr4_4:61009673-61009692 None:intergenic 45.0%
TACAAGCTGCAGGCATGTAA+TGG + chr4_4:61009979-61009998 Msa0692450:three_prime_UTR 45.0%
ACAAGCTGCAGGCATGTAAT+GGG + chr4_4:61009980-61009999 Msa0692450:three_prime_UTR 45.0%
CCGGGTCAAAAACTTGATCA+TGG + chr4_4:61010017-61010036 Msa0692450:three_prime_UTR 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4_4:61010228-61010247 None:intergenic 45.0%
AGATCTCATCAATTTGCCGC+AGG + chr4_4:61010301-61010320 Msa0692450:three_prime_UTR 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4_4:61010337-61010356 None:intergenic 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4_4:61010351-61010370 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4_4:61010610-61010629 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4_4:61010651-61010670 Msa0692450:three_prime_UTR 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4_4:61010652-61010671 Msa0692450:three_prime_UTR 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4_4:61010699-61010718 None:intergenic 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4_4:61010713-61010732 Msa0692450:three_prime_UTR 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4_4:61010753-61010772 None:intergenic 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4_4:61010780-61010799 None:intergenic 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4_4:61010800-61010819 None:intergenic 45.0%
!!! AAAGAAATTTATTTTTTTTT+TGG + chr4_4:61006405-61006424 Msa0692450:intron 5.0%
CAAACACGAAAACGGCTCCT+TGG - chr4_4:61005784-61005803 None:intergenic 50.0%
!! CAAGGAGCCGTTTTCGTGTT+TGG + chr4_4:61005782-61005801 Msa0692450:CDS 50.0%
CTTGCAGGAAGTAGAATGGG+AGG - chr4_4:61005967-61005986 None:intergenic 50.0%
! CGTAGATGGGTTTGGTAGAC+GGG + chr4_4:61007056-61007075 Msa0692450:intron 50.0%
! GTAGATGGGTTTGGTAGACG+GGG + chr4_4:61007057-61007076 Msa0692450:intron 50.0%
!! CTAAGAGTGTCCTGCAATGG+GGG + chr4_4:61007182-61007201 Msa0692450:CDS 50.0%
GTTCCGGAACAACCAATGTG+AGG - chr4_4:61007350-61007369 None:intergenic 50.0%
! AATCCTTTTGGGCAGACCGT+AGG + chr4_4:61007379-61007398 Msa0692450:CDS 50.0%
ATACCTACGGTCTGCCCAAA+AGG - chr4_4:61007385-61007404 None:intergenic 50.0%
GAAGTGCACCACCTTGTGTT+TGG - chr4_4:61008069-61008088 None:intergenic 50.0%
GAGGGGTGAATTTAAGTGCC+TGG - chr4_4:61008166-61008185 None:intergenic 50.0%
!! ATGGACATGCTGGCTTTCTC+AGG + chr4_4:61008266-61008285 Msa0692450:CDS 50.0%
AAGAAGCCGAGGATCTCAAG+CGG + chr4_4:61008312-61008331 Msa0692450:CDS 50.0%
GTCTGAAGAAAGGAGATCCC+AGG + chr4_4:61008615-61008634 Msa0692450:CDS 50.0%
GTGTCAAAGGACATAGACCC+TGG - chr4_4:61008636-61008655 None:intergenic 50.0%
GGGTCTATGTCCTTTGACAC+CGG + chr4_4:61008636-61008655 Msa0692450:CDS 50.0%
TCTATGTCCTTTGACACCGG+AGG + chr4_4:61008639-61008658 Msa0692450:CDS 50.0%
ATAACCAAGGCAGTCTCCTC+CGG - chr4_4:61008658-61008677 None:intergenic 50.0%
GCCTTGGTTATGCAAGCCTT+AGG + chr4_4:61008667-61008686 Msa0692450:CDS 50.0%
!! GCAAGCCTTAGGTTTTGACC+GGG + chr4_4:61008678-61008697 Msa0692450:CDS 50.0%
TGTCTCCCGGTCAAAACCTA+AGG - chr4_4:61008686-61008705 None:intergenic 50.0%
!! CCAAGTGCTGAAAAATGGGG+AGG - chr4_4:61008916-61008935 None:intergenic 50.0%
!! CCTCCCCATTTTTCAGCACT+TGG + chr4_4:61008913-61008932 Msa0692450:intron 50.0%
GCCATGTTCCCATCATAGGT+AGG - chr4_4:61009159-61009178 None:intergenic 50.0%
GTTTGTAGATGCTGTGCGAC+AGG + chr4_4:61009409-61009428 Msa0692450:CDS 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG - chr4_4:61009513-61009532 None:intergenic 50.0%
!! CCTCACAAAGGCACTCATGA+GGG - chr4_4:61009517-61009536 None:intergenic 50.0%
CCTCATGAGTGCCTTTGTGA+GGG + chr4_4:61009515-61009534 Msa0692450:CDS 50.0%
CTGAAAATGGCTCCTTCCCT+CGG + chr4_4:61009653-61009672 Msa0692450:three_prime_UTR 50.0%
TGAAAATGGCTCCTTCCCTC+GGG + chr4_4:61009654-61009673 Msa0692450:three_prime_UTR 50.0%
AAGAACTTATGCCCGAGGGA+AGG - chr4_4:61009668-61009687 None:intergenic 50.0%
CATGCCTGCAGCTTGTAAAG+TGG - chr4_4:61009976-61009995 None:intergenic 50.0%
TCACATGCGTTCACCGTAGA+AGG + chr4_4:61010065-61010084 Msa0692450:three_prime_UTR 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4_4:61010207-61010226 None:intergenic 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4_4:61010219-61010238 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4_4:61010237-61010256 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4_4:61010655-61010674 Msa0692450:three_prime_UTR 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4_4:61010712-61010731 Msa0692450:three_prime_UTR 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4_4:61010752-61010771 None:intergenic 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4_4:61010754-61010773 None:intergenic 50.0%
!! AGATATGGAAGCATCCCTGC+TGG + chr4_4:61010818-61010837 Msa0692450:three_prime_UTR 50.0%
ATAACCACCCTCTTCCAGCA+GGG - chr4_4:61010835-61010854 None:intergenic 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4_4:61010890-61010909 None:intergenic 50.0%
GAAGCTGGTGATTGAGGGTG+AGG - chr4_4:61005455-61005474 None:intergenic 55.0%
ACAACTCAACGGCCTCCTCA+AGG + chr4_4:61005919-61005938 Msa0692450:CDS 55.0%
!! GCTAACAGGAGGCATCTCCA+GGG - chr4_4:61007603-61007622 None:intergenic 55.0%
!! AGCTAACAGGAGGCATCTCC+AGG - chr4_4:61007604-61007623 None:intergenic 55.0%
TGGAGATGCCTCCTGTTAGC+TGG + chr4_4:61007603-61007622 Msa0692450:CDS 55.0%
CCTCATCCGCTTGAGATCCT+CGG - chr4_4:61008321-61008340 None:intergenic 55.0%
GCAGCCGGTGAGATTTATGG+TGG + chr4_4:61008718-61008737 Msa0692450:CDS 55.0%
CCCTCATGAGTGCCTTTGTG+AGG + chr4_4:61009514-61009533 Msa0692450:CDS 55.0%
!! CCCTCACAAAGGCACTCATG+AGG - chr4_4:61009518-61009537 None:intergenic 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4_4:61010385-61010404 None:intergenic 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4_4:61010717-61010736 None:intergenic 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4_4:61010736-61010755 Msa0692450:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4_4:61010741-61010760 None:intergenic 55.0%
! GAAGCATCCCTGCTGGAAGA+GGG + chr4_4:61010825-61010844 Msa0692450:three_prime_UTR 55.0%
CATAACCACCCTCTTCCAGC+AGG - chr4_4:61010836-61010855 None:intergenic 55.0%
CTGCTGGAAGAGGGTGGTTA+TGG + chr4_4:61010834-61010853 Msa0692450:three_prime_UTR 55.0%
! TCGCGAGAGGGGACCTTTTG+TGG + chr4_4:61008223-61008242 Msa0692450:CDS 60.0%
CCGAGGATCTCAAGCGGATG+AGG + chr4_4:61008318-61008337 Msa0692450:CDS 60.0%
! GCAGTCTCCTCCGGTGTCAA+AGG - chr4_4:61008649-61008668 None:intergenic 60.0%
AACTTGTGGAAGGCCACCGC+AGG + chr4_4:61009181-61009200 Msa0692450:CDS 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4_4:61010664-61010683 Msa0692450:three_prime_UTR 60.0%
!! GGAAGCATCCCTGCTGGAAG+AGG + chr4_4:61010824-61010843 Msa0692450:three_prime_UTR 60.0%
GACACCGGAGGAGACTGCCT+TGG + chr4_4:61008651-61008670 Msa0692450:CDS 65.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4_4:61010668-61010687 None:intergenic 65.0%
GCATCCCTGCTGGAAGAGGG+TGG + chr4_4:61010828-61010847 Msa0692450:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61005050 61010926 61005050 ID=Msa0692450;Name=Msa0692450
chr4_4 mRNA 61005050 61010926 61005050 ID=Msa0692450-mRNA-1;Parent=Msa0692450;Name=Msa0692450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=578|1|1|1|0.77|0.6|10|1095|507
chr4_4 exon 61005050 61005551 61005050 ID=Msa0692450-mRNA-1:exon:16752;Parent=Msa0692450-mRNA-1
chr4_4 exon 61005633 61005985 61005633 ID=Msa0692450-mRNA-1:exon:16753;Parent=Msa0692450-mRNA-1
chr4_4 exon 61007159 61007226 61007159 ID=Msa0692450-mRNA-1:exon:16754;Parent=Msa0692450-mRNA-1
chr4_4 exon 61007312 61007400 61007312 ID=Msa0692450-mRNA-1:exon:16755;Parent=Msa0692450-mRNA-1
chr4_4 exon 61007490 61007652 61007490 ID=Msa0692450-mRNA-1:exon:16756;Parent=Msa0692450-mRNA-1
chr4_4 exon 61008050 61008339 61008050 ID=Msa0692450-mRNA-1:exon:16757;Parent=Msa0692450-mRNA-1
chr4_4 exon 61008579 61008783 61008579 ID=Msa0692450-mRNA-1:exon:16758;Parent=Msa0692450-mRNA-1
chr4_4 exon 61009045 61009202 61009045 ID=Msa0692450-mRNA-1:exon:16759;Parent=Msa0692450-mRNA-1
chr4_4 exon 61009316 61010403 61009316 ID=Msa0692450-mRNA-1:exon:16760;Parent=Msa0692450-mRNA-1
chr4_4 exon 61010646 61010926 61010646 ID=Msa0692450-mRNA-1:exon:16761;Parent=Msa0692450-mRNA-1
chr4_4 five_prime_UTR 61005050 61005551 61005050 ID=Msa0692450-mRNA-1:five_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4 five_prime_UTR 61005633 61005708 61005633 ID=Msa0692450-mRNA-1:five_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61005709 61005985 61005709 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61007159 61007226 61007159 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61007312 61007400 61007312 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61007490 61007652 61007490 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61008050 61008339 61008050 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61008579 61008783 61008579 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61009045 61009202 61009045 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 CDS 61009316 61009589 61009316 ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4 three_prime_UTR 61009590 61010403 61009590 ID=Msa0692450-mRNA-1:three_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4 three_prime_UTR 61010646 61010926 61010646 ID=Msa0692450-mRNA-1:three_prime_utr;Parent=Msa0692450-mRNA-1
Gene Sequence

>Msa0692450

ATGGAAGTTAGATCATCAGAGGGTAATCAAGTGAGATATTATGATAAGCTTCTTCAAGCTGCTCCTTTGATTCCAAGGAGCCGTTTTCGTGTTTGGTTTATTCGAATTTGTTCATCCATTGTGCTGTGGACATGTTTGGTTCAGCTTGTGACTGTGAGTGAACTATGGCATTCCAATTTCTTTACTGGATTTACTAGTCGTATATATCACACAACTCAACGGCCTCCTCAAGGAGATGTTATATTTGCTCAATCTCCTCCCATTCTACTTCCTGCAAGAAATTATACTAGTAATGGTTTTCTAAGAGTGTCCTGCAATGGGGGTTTGAATCAAATGCGTGCAGCGATTTGTGACATGGTGACAATTGCTCGGCTTTTGAACCTCACATTGGTTGTTCCGGAACTTGATAAGAAATCCTTTTGGGCAGACCGTAGTGGCTTCGAGGATATATTTGATGTAAGACATTTCATTGATTCTTTACGAGATGAAGTTCGAATAGTGAAAAGAGTTCCCAAAAAGTTTACTAGGAAAAGTGGATACTTGACCCTGGAGATGCCTCCTGTTAGCTGGTCAAATGAAAAGTATTACTTGGAGCAGATTCTACCGCTTTTTGCCAAACACAAGGTGGTGCACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCCCAATTGATCTACAGAAACTTAGGTGCCGTGTTAATTACCAGGCACTTAAATTCACCCCTCAAATTGAGAATCTGGGGCAAAAATTGATTCAGATACTTCGCGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCTTGGTTGCACTAATGAAGAAGCCGAGGATCTCAAGCGGATGAGATATGCATTCCCTTCATGGAGAGAGAAGGAAATAGTGTCTGAAGAAAGGAGATCCCAGGGTCTATGTCCTTTGACACCGGAGGAGACTGCCTTGGTTATGCAAGCCTTAGGTTTTGACCGGGAGACACAGATTTACATTGCAGCCGGTGAGATTTATGGTGGTGAACGTAGACTTGCGCAACTGAGAGCTGCATTTCCAAAAATTGTTAAAAAAGAGGTATTGGTCGCCCTTGATGAGTTACAGCAGTTCCAAAATCATTCATCACAGATGGCTGCTTTGGATTTCATGGTTTCGGTAGCCGGTGACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTATTCCGGTTTTAAAAAGTCCATCTTATTGGACCGGAAAAGGCTTGTACAATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATGAGTTTGTAGATGCTGTGCGACAGGTTCACGAAAAGAGAATGGGTCAGCCGACTTATCGTCGAATCATTGTAGACAAACCAAAGGAGGAGGATTATTTCTACGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGATTTGCTAGGTCCTCAAAACTCTACTCAAGTAAGATGA
Protein sequence

>Msa0692450

MEVRSSEGNQVRYYDKLLQAAPLIPRSRFRVWFIRICSSIVLWTCLVQLVTVSELWHSNFFTGFTSRIYHTTQRPPQGDVIFAQSPPILLPARNYTSNGFLRVSCNGGLNQMRAAICDMVTIARLLNLTLVVPELDKKSFWADRSGFEDIFDVRHFIDSLRDEVRIVKRVPKKFTRKSGYLTLEMPPVSWSNEKYYLEQILPLFAKHKVVHFNKTDARLANNGLPIDLQKLRCRVNYQALKFTPQIENLGQKLIQILRERGPFVALHLRYEMDMLAFSGCTLGCTNEEAEDLKRMRYAFPSWREKEIVSEERRSQGLCPLTPEETALVMQALGFDRETQIYIAAGEIYGGERRLAQLRAAFPKIVKKEVLVALDELQQFQNHSSQMAALDFMVSVAGDTFIPTYDGNMAKLVEGHRRYSGFKKSILLDRKRLVQLLDMHQNGTLPWNEFVDAVRQVHEKRMGQPTYRRIIVDKPKEEDYFYANPHECLCEGTKCDDLLGPQNSTQVR*