AlfalfaGEDB | Msa0692450

M. sativa cultivar zhongmu-4 / Msa0692450

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF10250.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692450	XP_013456762.1	97.830	507	11	0	1	507	1	507	0.0	1039

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692450	sp\|Q6NQ51\|RRT4_ARATH	72.079	505	135	2	1	505	1	499	0.0	761

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692450	A0A072UP41	97.830	507	11	0	1	507	1	507	0.0	1039

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa0692450	0.801993	6.926306e-49	-8.615850e-47
Msa0007570	Msa0692450	0.824618	7.320827e-54	-8.615850e-47
Msa0015220	Msa0692450	0.826790	2.235447e-54	-8.615850e-47
Msa0021240	Msa0692450	0.802580	5.244126e-49	-8.615850e-47
Msa0021570	Msa0692450	0.803967	2.707524e-49	-8.615850e-47
Msa0022960	Msa0692450	0.821467	3.976376e-53	-8.615850e-47
Msa0024320	Msa0692450	0.817594	3.040919e-52	-8.615850e-47
Msa0024500	Msa0692450	0.817595	3.039043e-52	-8.615850e-47
Msa0027020	Msa0692450	0.808894	2.474994e-50	-8.615850e-47
Msa0027030	Msa0692450	0.823534	1.315049e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692450	MtrunA17_Chr4g0042711	97.830	507	11	0	1	507	1	507	0.0	1039
Msa0692450	MtrunA17_Chr5g0417871	79.835	486	91	3	28	506	9	494	0.0	819
Msa0692450	MtrunA17_Chr6g0455571	58.799	483	197	2	8	488	25	507	0.0	605
Msa0692450	MtrunA17_Chr4g0061781	61.456	467	172	3	29	488	43	508	0.0	602
Msa0692450	MtrunA17_Chr2g0307971	57.692	494	201	4	8	499	30	517	0.0	597
Msa0692450	MtrunA17_Chr5g0426591	48.675	415	201	4	87	489	97	511	6.15e-140	413
Msa0692450	MtrunA17_Chr4g0070551	48.232	396	198	5	97	490	228	618	4.42e-135	404
Msa0692450	MtrunA17_Chr4g0008451	47.932	411	205	6	97	505	232	635	2.94e-134	403
Msa0692450	MtrunA17_Chr3g0132371	47.952	415	201	5	87	489	127	538	5.68e-132	394
Msa0692450	MtrunA17_Chr5g0436321	46.851	397	204	5	96	490	160	551	5.20e-130	389

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692450	AT1G14020.1	72.079	505	135	2	1	505	1	499	0.0	761
Msa0692450	AT2G03280.1	69.528	466	130	4	24	488	26	480	0.0	686
Msa0692450	AT2G03280.2	65.720	493	130	5	24	488	26	507	0.0	672
Msa0692450	AT5G15740.1	58.030	467	194	2	23	488	33	498	0.0	579
Msa0692450	AT3G02250.1	58.526	475	193	3	15	488	27	498	0.0	576
Msa0692450	AT2G37980.1	46.453	437	227	5	73	507	202	633	1.13e-137	412
Msa0692450	AT3G54100.1	46.065	432	216	7	73	497	198	619	2.19e-133	400
Msa0692450	AT5G35570.1	47.407	405	206	5	96	498	250	649	5.04e-132	397
Msa0692450	AT1G22460.1	45.370	432	216	6	76	490	130	558	4.55e-129	387
Msa0692450	AT5G64600.1	46.778	419	200	8	87	489	103	514	6.43e-129	385

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Find 231 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCATCTTATTGGAC+CGG	0.458534	4_4:+61009330	Msa0692450:CDS
AAACGGCTCCTTGGAATCAA+AGG	0.552528	4_4:-61005772	None:intergenic
AACAACAGTATGTCATTAAC+TGG	0.364991	4_4:+61010139	Msa0692450:three_prime_UTR
AACATGGCAAAACTTGTGGA+AGG	0.609196	4_4:+61009171	Msa0692450:CDS
AACTATACTGAATTTGGTGG+GGG	0.544382	4_4:-61009804	None:intergenic
AACTTGATAAGAAATCCTTT+TGG	0.353716	4_4:+61007367	Msa0692450:CDS
AACTTGTGGAAGGCCACCGC+AGG	0.602466	4_4:+61009181	Msa0692450:CDS
AAGAACTTATGCCCGAGGGA+AGG	0.599553	4_4:-61009665	None:intergenic
AAGAAGCCGAGGATCTCAAG+CGG	0.678663	4_4:+61008312	Msa0692450:CDS
AAGAGGCAAATCTAGATTCA+AGG	0.484970	4_4:-61010365	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAAAGAAAGGATCAAAT+CGG	-	chr4_4:61005290-61005309	None:intergenic	30.0%
ATATAAGGAATTGAGGAACA+AGG	-	chr4_4:61005329-61005348	None:intergenic	30.0%
GAATAAACCAAACACGAAAA+CGG	-	chr4_4:61005792-61005811	None:intergenic	30.0%
GTATATATCACACAACTCAA+CGG	+	chr4_4:61005908-61005927	Msa0692450:CDS	30.0%
CAAAGCAAATAATCTCTAAC+AGG	-	chr4_4:61006555-61006574	None:intergenic	30.0%
AGACTTCACTCTAAACTAAA+TGG	-	chr4_4:61006676-61006695	None:intergenic	30.0%
AAATTCTACTGAACAGCTAA+AGG	-	chr4_4:61006796-61006815	None:intergenic	30.0%
GCAGGAAATTATACTAGTAA+TGG	+	chr4_4:61007155-61007174	Msa0692450:intron	30.0%
TAATAGGAATAAAGAAGTGG+TGG	-	chr4_4:61007249-61007268	None:intergenic	30.0%
AAGGATTTCTTATCAAGTTC+CGG	-	chr4_4:61007366-61007385	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	61005050	61010926	61005050	ID=Msa0692450;Name=Msa0692450
chr4_4	mRNA	61005050	61010926	61005050	ID=Msa0692450-mRNA-1;Parent=Msa0692450;Name=Msa0692450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=578\|1\|1\|1\|0.77\|0.6\|10\|1095\|507
chr4_4	exon	61005050	61005551	61005050	ID=Msa0692450-mRNA-1:exon:16752;Parent=Msa0692450-mRNA-1
chr4_4	exon	61005633	61005985	61005633	ID=Msa0692450-mRNA-1:exon:16753;Parent=Msa0692450-mRNA-1
chr4_4	exon	61007159	61007226	61007159	ID=Msa0692450-mRNA-1:exon:16754;Parent=Msa0692450-mRNA-1
chr4_4	exon	61007312	61007400	61007312	ID=Msa0692450-mRNA-1:exon:16755;Parent=Msa0692450-mRNA-1
chr4_4	exon	61007490	61007652	61007490	ID=Msa0692450-mRNA-1:exon:16756;Parent=Msa0692450-mRNA-1
chr4_4	exon	61008050	61008339	61008050	ID=Msa0692450-mRNA-1:exon:16757;Parent=Msa0692450-mRNA-1
chr4_4	exon	61008579	61008783	61008579	ID=Msa0692450-mRNA-1:exon:16758;Parent=Msa0692450-mRNA-1
chr4_4	exon	61009045	61009202	61009045	ID=Msa0692450-mRNA-1:exon:16759;Parent=Msa0692450-mRNA-1
chr4_4	exon	61009316	61010403	61009316	ID=Msa0692450-mRNA-1:exon:16760;Parent=Msa0692450-mRNA-1
chr4_4	exon	61010646	61010926	61010646	ID=Msa0692450-mRNA-1:exon:16761;Parent=Msa0692450-mRNA-1
chr4_4	five_prime_UTR	61005050	61005551	61005050	ID=Msa0692450-mRNA-1:five_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4	five_prime_UTR	61005633	61005708	61005633	ID=Msa0692450-mRNA-1:five_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61005709	61005985	61005709	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61007159	61007226	61007159	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61007312	61007400	61007312	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61007490	61007652	61007490	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61008050	61008339	61008050	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61008579	61008783	61008579	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61009045	61009202	61009045	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	CDS	61009316	61009589	61009316	ID=Msa0692450-mRNA-1:cds;Parent=Msa0692450-mRNA-1
chr4_4	three_prime_UTR	61009590	61010403	61009590	ID=Msa0692450-mRNA-1:three_prime_utr;Parent=Msa0692450-mRNA-1
chr4_4	three_prime_UTR	61010646	61010926	61010646	ID=Msa0692450-mRNA-1:three_prime_utr;Parent=Msa0692450-mRNA-1

Gene Sequence

>Msa0692450

ATGGAAGTTAGATCATCAGAGGGTAATCAAGTGAGATATTATGATAAGCTTCTTCAAGCTGCTCCTTTGATTCCAAGGAGCCGTTTTCGTGTTTGGTTTATTCGAATTTGTTCATCCATTGTGCTGTGGACATGTTTGGTTCAGCTTGTGACTGTGAGTGAACTATGGCATTCCAATTTCTTTACTGGATTTACTAGTCGTATATATCACACAACTCAACGGCCTCCTCAAGGAGATGTTATATTTGCTCAATCTCCTCCCATTCTACTTCCTGCAAGAAATTATACTAGTAATGGTTTTCTAAGAGTGTCCTGCAATGGGGGTTTGAATCAAATGCGTGCAGCGATTTGTGACATGGTGACAATTGCTCGGCTTTTGAACCTCACATTGGTTGTTCCGGAACTTGATAAGAAATCCTTTTGGGCAGACCGTAGTGGCTTCGAGGATATATTTGATGTAAGACATTTCATTGATTCTTTACGAGATGAAGTTCGAATAGTGAAAAGAGTTCCCAAAAAGTTTACTAGGAAAAGTGGATACTTGACCCTGGAGATGCCTCCTGTTAGCTGGTCAAATGAAAAGTATTACTTGGAGCAGATTCTACCGCTTTTTGCCAAACACAAGGTGGTGCACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCCCAATTGATCTACAGAAACTTAGGTGCCGTGTTAATTACCAGGCACTTAAATTCACCCCTCAAATTGAGAATCTGGGGCAAAAATTGATTCAGATACTTCGCGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCTTGGTTGCACTAATGAAGAAGCCGAGGATCTCAAGCGGATGAGATATGCATTCCCTTCATGGAGAGAGAAGGAAATAGTGTCTGAAGAAAGGAGATCCCAGGGTCTATGTCCTTTGACACCGGAGGAGACTGCCTTGGTTATGCAAGCCTTAGGTTTTGACCGGGAGACACAGATTTACATTGCAGCCGGTGAGATTTATGGTGGTGAACGTAGACTTGCGCAACTGAGAGCTGCATTTCCAAAAATTGTTAAAAAAGAGGTATTGGTCGCCCTTGATGAGTTACAGCAGTTCCAAAATCATTCATCACAGATGGCTGCTTTGGATTTCATGGTTTCGGTAGCCGGTGACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTATTCCGGTTTTAAAAAGTCCATCTTATTGGACCGGAAAAGGCTTGTACAATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATGAGTTTGTAGATGCTGTGCGACAGGTTCACGAAAAGAGAATGGGTCAGCCGACTTATCGTCGAATCATTGTAGACAAACCAAAGGAGGAGGATTATTTCTACGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGATTTGCTAGGTCCTCAAAACTCTACTCAAGTAAGATGA

Protein sequence

>Msa0692450

MEVRSSEGNQVRYYDKLLQAAPLIPRSRFRVWFIRICSSIVLWTCLVQLVTVSELWHSNFFTGFTSRIYHTTQRPPQGDVIFAQSPPILLPARNYTSNGFLRVSCNGGLNQMRAAICDMVTIARLLNLTLVVPELDKKSFWADRSGFEDIFDVRHFIDSLRDEVRIVKRVPKKFTRKSGYLTLEMPPVSWSNEKYYLEQILPLFAKHKVVHFNKTDARLANNGLPIDLQKLRCRVNYQALKFTPQIENLGQKLIQILRERGPFVALHLRYEMDMLAFSGCTLGCTNEEAEDLKRMRYAFPSWREKEIVSEERRSQGLCPLTPEETALVMQALGFDRETQIYIAAGEIYGGERRLAQLRAAFPKIVKKEVLVALDELQQFQNHSSQMAALDFMVSVAGDTFIPTYDGNMAKLVEGHRRYSGFKKSILLDRKRLVQLLDMHQNGTLPWNEFVDAVRQVHEKRMGQPTYRRIIVDKPKEEDYFYANPHECLCEGTKCDDLLGPQNSTQVR*