AlfalfaGEDB | MS.gene82878

M. sativa cultivar XinJiangDaYe / MS.gene82878

KEGG: K02935
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00542.22 PF16320.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82878.t1	XP_013450782.1	88.4	181	20	1	1	180	1	181	1.20E-69	272.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82878.t1	P36688	62.7	185	55	4	9	180	3	186	1.2e-44	181.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82878.t1	A0A072U545	88.4	181	20	1	1	180	1	181	8.8e-70	272.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene82878	0.884372	2.03E-71	-1.69E-46
MS.gene049171	MS.gene82878	0.88108	3.23E-70	-1.69E-46
MS.gene049173	MS.gene82878	0.828345	9.47E-55	-1.69E-46
MS.gene049217	MS.gene82878	0.89274	1.20E-74	-1.69E-46
MS.gene049222	MS.gene82878	0.895442	9.54E-76	-1.69E-46
MS.gene049232	MS.gene82878	0.843111	1.71E-58	-1.69E-46
MS.gene049285	MS.gene82878	0.891528	3.66E-74	-1.69E-46
MS.gene049320	MS.gene82878	0.890031	1.42E-73	-1.69E-46
MS.gene049427	MS.gene82878	0.861402	1.05E-63	-1.69E-46
MS.gene049609	MS.gene82878	0.874379	7.07E-68	-1.69E-46
MS.gene049615	MS.gene82878	0.879064	1.69E-69	-1.69E-46
MS.gene049627	MS.gene82878	0.823656	1.23E-53	-1.69E-46
MS.gene049633	MS.gene82878	0.82041	6.96E-53	-1.69E-46
MS.gene049805	MS.gene82878	0.892002	2.37E-74	-1.69E-46
MS.gene05010	MS.gene82878	0.851439	8.87E-61	-1.69E-46
MS.gene050163	MS.gene82878	0.890135	1.30E-73	-1.69E-46
MS.gene050165	MS.gene82878	0.861464	1.01E-63	-1.69E-46
MS.gene050216	MS.gene82878	0.816528	5.28E-52	-1.69E-46
MS.gene050323	MS.gene82878	0.805606	1.23E-49	-1.69E-46
MS.gene050333	MS.gene82878	0.861455	1.01E-63	-1.69E-46
MS.gene050380	MS.gene82878	-0.814258	1.69E-51	-1.69E-46
MS.gene050381	MS.gene82878	-0.815103	1.10E-51	-1.69E-46
MS.gene050432	MS.gene82878	0.83077	2.44E-55	-1.69E-46
MS.gene050504	MS.gene82878	0.882265	1.20E-70	-1.69E-46
MS.gene050518	MS.gene82878	0.903854	2.25E-79	-1.69E-46
MS.gene050520	MS.gene82878	0.834894	2.30E-56	-1.69E-46
MS.gene050538	MS.gene82878	0.834691	2.59E-56	-1.69E-46
MS.gene050577	MS.gene82878	0.866324	3.10E-65	-1.69E-46
MS.gene050593	MS.gene82878	0.881613	2.08E-70	-1.69E-46
MS.gene050612	MS.gene82878	0.8705	1.39E-66	-1.69E-46
MS.gene050647	MS.gene82878	-0.810046	1.40E-50	-1.69E-46
MS.gene050662	MS.gene82878	0.860284	2.30E-63	-1.69E-46
MS.gene050670	MS.gene82878	0.833616	4.81E-56	-1.69E-46
MS.gene050675	MS.gene82878	0.857801	1.27E-62	-1.69E-46
MS.gene050686	MS.gene82878	0.862057	6.63E-64	-1.69E-46
MS.gene050699	MS.gene82878	0.886658	2.82E-72	-1.69E-46
MS.gene050747	MS.gene82878	0.882724	8.19E-71	-1.69E-46
MS.gene050767	MS.gene82878	0.84949	3.13E-60	-1.69E-46
MS.gene050770	MS.gene82878	0.848311	6.65E-60	-1.69E-46
MS.gene050772	MS.gene82878	0.898478	5.10E-77	-1.69E-46
MS.gene050783	MS.gene82878	0.802433	5.62E-49	-1.69E-46
MS.gene05080	MS.gene82878	0.851626	7.85E-61	-1.69E-46
MS.gene050868	MS.gene82878	0.829507	4.95E-55	-1.69E-46
MS.gene050871	MS.gene82878	0.828244	1.00E-54	-1.69E-46
MS.gene050950	MS.gene82878	0.87002	2.00E-66	-1.69E-46
MS.gene050986	MS.gene82878	0.849962	2.31E-60	-1.69E-46
MS.gene05100	MS.gene82878	0.891155	5.14E-74	-1.69E-46
MS.gene05105	MS.gene82878	0.843499	1.35E-58	-1.69E-46
MS.gene051167	MS.gene82878	-0.83614	1.11E-56	-1.69E-46
MS.gene051228	MS.gene82878	0.813223	2.85E-51	-1.69E-46
MS.gene051387	MS.gene82878	0.883205	5.46E-71	-1.69E-46
MS.gene051509	MS.gene82878	0.828754	7.54E-55	-1.69E-46
MS.gene051551	MS.gene82878	0.867268	1.55E-65	-1.69E-46
MS.gene051666	MS.gene82878	0.925392	1.95E-90	-1.69E-46
MS.gene051692	MS.gene82878	0.850146	2.05E-60	-1.69E-46
MS.gene051694	MS.gene82878	0.861559	9.42E-64	-1.69E-46
MS.gene051810	MS.gene82878	0.83272	8.05E-56	-1.69E-46
MS.gene051858	MS.gene82878	0.863058	3.26E-64	-1.69E-46
MS.gene051874	MS.gene82878	0.806413	8.33E-50	-1.69E-46
MS.gene051877	MS.gene82878	0.806014	1.01E-49	-1.69E-46
MS.gene051949	MS.gene82878	0.806709	7.21E-50	-1.69E-46
MS.gene052164	MS.gene82878	0.852157	5.55E-61	-1.69E-46
MS.gene052271	MS.gene82878	0.896696	2.88E-76	-1.69E-46
MS.gene052310	MS.gene82878	0.802856	4.60E-49	-1.69E-46
MS.gene052322	MS.gene82878	0.823984	1.03E-53	-1.69E-46
MS.gene052379	MS.gene82878	0.849007	4.26E-60	-1.69E-46
MS.gene052421	MS.gene82878	0.853726	1.97E-61	-1.69E-46
MS.gene052481	MS.gene82878	0.836111	1.13E-56	-1.69E-46
MS.gene052482	MS.gene82878	0.838062	3.59E-57	-1.69E-46
MS.gene052484	MS.gene82878	0.834711	2.56E-56	-1.69E-46
MS.gene052485	MS.gene82878	0.825314	5.02E-54	-1.69E-46
MS.gene052486	MS.gene82878	0.839348	1.67E-57	-1.69E-46
MS.gene052501	MS.gene82878	0.822527	2.26E-53	-1.69E-46
MS.gene052503	MS.gene82878	0.841011	6.15E-58	-1.69E-46
MS.gene052504	MS.gene82878	0.817639	2.97E-52	-1.69E-46
MS.gene052505	MS.gene82878	0.805929	1.05E-49	-1.69E-46
MS.gene052506	MS.gene82878	0.852987	3.22E-61	-1.69E-46
MS.gene052615	MS.gene82878	0.87002	2.00E-66	-1.69E-46
MS.gene052670	MS.gene82878	0.816133	6.47E-52	-1.69E-46
MS.gene052820	MS.gene82878	0.82612	3.23E-54	-1.69E-46
MS.gene052822	MS.gene82878	0.848568	5.64E-60	-1.69E-46
MS.gene052823	MS.gene82878	0.832079	1.16E-55	-1.69E-46
MS.gene052825	MS.gene82878	0.829458	5.09E-55	-1.69E-46
MS.gene052916	MS.gene82878	0.837951	3.84E-57	-1.69E-46
MS.gene052966	MS.gene82878	0.822191	2.70E-53	-1.69E-46
MS.gene052982	MS.gene82878	0.812483	4.14E-51	-1.69E-46
MS.gene053009	MS.gene82878	0.867404	1.40E-65	-1.69E-46
MS.gene053103	MS.gene82878	0.845058	5.15E-59	-1.69E-46
MS.gene053104	MS.gene82878	0.867475	1.33E-65	-1.69E-46
MS.gene053107	MS.gene82878	0.833967	3.93E-56	-1.69E-46
MS.gene053203	MS.gene82878	0.862636	4.40E-64	-1.69E-46
MS.gene053207	MS.gene82878	0.881942	1.58E-70	-1.69E-46
MS.gene053213	MS.gene82878	0.910017	2.99E-82	-1.69E-46
MS.gene053286	MS.gene82878	0.902558	8.58E-79	-1.69E-46
MS.gene053322	MS.gene82878	0.899947	1.20E-77	-1.69E-46
MS.gene053436	MS.gene82878	0.893052	9.00E-75	-1.69E-46
MS.gene053449	MS.gene82878	0.805131	1.55E-49	-1.69E-46
MS.gene053574	MS.gene82878	0.88466	1.59E-71	-1.69E-46
MS.gene053579	MS.gene82878	0.827876	1.23E-54	-1.69E-46
MS.gene053626	MS.gene82878	0.865908	4.20E-65	-1.69E-46
MS.gene053632	MS.gene82878	0.898876	3.45E-77	-1.69E-46
MS.gene053813	MS.gene82878	0.860367	2.17E-63	-1.69E-46
MS.gene053824	MS.gene82878	0.827539	1.48E-54	-1.69E-46
MS.gene053916	MS.gene82878	0.865194	7.05E-65	-1.69E-46
MS.gene054003	MS.gene82878	0.824719	6.93E-54	-1.69E-46
MS.gene054376	MS.gene82878	0.836473	9.17E-57	-1.69E-46
MS.gene054408	MS.gene82878	0.84547	3.98E-59	-1.69E-46
MS.gene054595	MS.gene82878	0.8926	1.37E-74	-1.69E-46
MS.gene054600	MS.gene82878	0.872437	3.18E-67	-1.69E-46
MS.gene054642	MS.gene82878	0.900251	8.83E-78	-1.69E-46
MS.gene05470	MS.gene82878	0.816857	4.45E-52	-1.69E-46
MS.gene054802	MS.gene82878	0.859039	5.45E-63	-1.69E-46
MS.gene054803	MS.gene82878	0.853951	1.70E-61	-1.69E-46
MS.gene054804	MS.gene82878	0.860397	2.13E-63	-1.69E-46
MS.gene054927	MS.gene82878	0.861183	1.23E-63	-1.69E-46
MS.gene054954	MS.gene82878	0.864911	8.65E-65	-1.69E-46
MS.gene05505	MS.gene82878	0.862802	3.92E-64	-1.69E-46
MS.gene055154	MS.gene82878	-0.823465	1.37E-53	-1.69E-46
MS.gene055206	MS.gene82878	0.869788	2.38E-66	-1.69E-46
MS.gene055212	MS.gene82878	0.801224	9.96E-49	-1.69E-46
MS.gene055224	MS.gene82878	0.82831	9.65E-55	-1.69E-46
MS.gene055289	MS.gene82878	0.828547	8.46E-55	-1.69E-46
MS.gene055362	MS.gene82878	0.884969	1.22E-71	-1.69E-46
MS.gene055397	MS.gene82878	0.870093	1.89E-66	-1.69E-46
MS.gene055412	MS.gene82878	0.819973	8.76E-53	-1.69E-46
MS.gene055499	MS.gene82878	0.866549	2.63E-65	-1.69E-46
MS.gene055502	MS.gene82878	0.888848	4.10E-73	-1.69E-46
MS.gene055577	MS.gene82878	0.866388	2.96E-65	-1.69E-46
MS.gene055629	MS.gene82878	0.812429	4.26E-51	-1.69E-46
MS.gene055636	MS.gene82878	0.837364	5.43E-57	-1.69E-46
MS.gene055638	MS.gene82878	0.83999	1.14E-57	-1.69E-46
MS.gene055647	MS.gene82878	0.902345	1.07E-78	-1.69E-46
MS.gene055722	MS.gene82878	0.877129	8.05E-69	-1.69E-46
MS.gene055748	MS.gene82878	0.826419	2.74E-54	-1.69E-46
MS.gene055750	MS.gene82878	0.837326	5.55E-57	-1.69E-46
MS.gene055751	MS.gene82878	0.812758	3.61E-51	-1.69E-46
MS.gene055911	MS.gene82878	0.804106	2.53E-49	-1.69E-46
MS.gene05592	MS.gene82878	0.893276	7.31E-75	-1.69E-46
MS.gene055941	MS.gene82878	0.872239	3.71E-67	-1.69E-46
MS.gene055956	MS.gene82878	-0.814943	1.19E-51	-1.69E-46
MS.gene05602	MS.gene82878	0.810219	1.29E-50	-1.69E-46
MS.gene056040	MS.gene82878	0.84153	4.49E-58	-1.69E-46
MS.gene056083	MS.gene82878	0.861127	1.28E-63	-1.69E-46
MS.gene056166	MS.gene82878	0.816485	5.40E-52	-1.69E-46
MS.gene056374	MS.gene82878	0.907145	6.95E-81	-1.69E-46
MS.gene056407	MS.gene82878	0.838119	3.47E-57	-1.69E-46
MS.gene056409	MS.gene82878	0.815477	9.06E-52	-1.69E-46
MS.gene056422	MS.gene82878	0.836084	1.15E-56	-1.69E-46
MS.gene056448	MS.gene82878	0.805089	1.58E-49	-1.69E-46
MS.gene056487	MS.gene82878	0.814605	1.42E-51	-1.69E-46
MS.gene056504	MS.gene82878	0.83353	5.06E-56	-1.69E-46
MS.gene056510	MS.gene82878	0.863947	1.73E-64	-1.69E-46
MS.gene056511	MS.gene82878	0.829289	5.59E-55	-1.69E-46
MS.gene056549	MS.gene82878	0.839806	1.27E-57	-1.69E-46
MS.gene056610	MS.gene82878	0.829806	4.19E-55	-1.69E-46
MS.gene05664	MS.gene82878	0.821561	3.78E-53	-1.69E-46
MS.gene056657	MS.gene82878	0.892857	1.08E-74	-1.69E-46
MS.gene05666	MS.gene82878	0.816566	5.18E-52	-1.69E-46
MS.gene056692	MS.gene82878	0.821177	4.64E-53	-1.69E-46
MS.gene056878	MS.gene82878	0.81234	4.45E-51	-1.69E-46
MS.gene056942	MS.gene82878	0.810926	9.04E-51	-1.69E-46
MS.gene057011	MS.gene82878	0.861282	1.14E-63	-1.69E-46
MS.gene057076	MS.gene82878	0.820939	5.26E-53	-1.69E-46
MS.gene057086	MS.gene82878	0.83575	1.40E-56	-1.69E-46
MS.gene057123	MS.gene82878	0.809902	1.50E-50	-1.69E-46
MS.gene057129	MS.gene82878	0.908355	1.87E-81	-1.69E-46
MS.gene057146	MS.gene82878	0.868261	7.45E-66	-1.69E-46
MS.gene057285	MS.gene82878	0.826657	2.40E-54	-1.69E-46
MS.gene057295	MS.gene82878	0.827284	1.70E-54	-1.69E-46
MS.gene057331	MS.gene82878	0.868162	8.02E-66	-1.69E-46
MS.gene05735	MS.gene82878	0.817973	2.50E-52	-1.69E-46
MS.gene057416	MS.gene82878	0.928681	2.05E-92	-1.69E-46
MS.gene057658	MS.gene82878	0.814634	1.39E-51	-1.69E-46
MS.gene057734	MS.gene82878	0.84711	1.42E-59	-1.69E-46
MS.gene057823	MS.gene82878	0.804196	2.43E-49	-1.69E-46
MS.gene057831	MS.gene82878	0.84364	1.24E-58	-1.69E-46
MS.gene057856	MS.gene82878	0.804386	2.21E-49	-1.69E-46
MS.gene05787	MS.gene82878	0.816568	5.17E-52	-1.69E-46
MS.gene057926	MS.gene82878	0.836903	7.12E-57	-1.69E-46
MS.gene058006	MS.gene82878	0.816281	6.00E-52	-1.69E-46
MS.gene058019	MS.gene82878	0.904506	1.14E-79	-1.69E-46
MS.gene058130	MS.gene82878	0.829585	4.74E-55	-1.69E-46
MS.gene058293	MS.gene82878	0.860641	1.79E-63	-1.69E-46
MS.gene058323	MS.gene82878	0.856176	3.84E-62	-1.69E-46
MS.gene058338	MS.gene82878	0.818292	2.12E-52	-1.69E-46
MS.gene05837	MS.gene82878	0.845958	2.93E-59	-1.69E-46
MS.gene058419	MS.gene82878	0.910621	1.53E-82	-1.69E-46
MS.gene058459	MS.gene82878	0.803631	3.18E-49	-1.69E-46
MS.gene058544	MS.gene82878	0.8849	1.29E-71	-1.69E-46
MS.gene058660	MS.gene82878	0.847345	1.23E-59	-1.69E-46
MS.gene058723	MS.gene82878	0.837854	4.07E-57	-1.69E-46
MS.gene058773	MS.gene82878	0.859926	2.95E-63	-1.69E-46
MS.gene058788	MS.gene82878	0.806225	9.12E-50	-1.69E-46
MS.gene058838	MS.gene82878	0.830928	2.23E-55	-1.69E-46
MS.gene05883	MS.gene82878	0.851111	1.10E-60	-1.69E-46
MS.gene058903	MS.gene82878	0.802232	6.18E-49	-1.69E-46
MS.gene058993	MS.gene82878	0.816723	4.77E-52	-1.69E-46
MS.gene059022	MS.gene82878	0.861957	7.12E-64	-1.69E-46
MS.gene059023	MS.gene82878	0.849409	3.30E-60	-1.69E-46
MS.gene059029	MS.gene82878	0.840582	7.97E-58	-1.69E-46
MS.gene05913	MS.gene82878	0.817338	3.47E-52	-1.69E-46
MS.gene05934	MS.gene82878	0.871945	4.64E-67	-1.69E-46
MS.gene059367	MS.gene82878	0.859018	5.53E-63	-1.69E-46
MS.gene059368	MS.gene82878	0.849968	2.30E-60	-1.69E-46
MS.gene059455	MS.gene82878	0.811944	5.43E-51	-1.69E-46
MS.gene059536	MS.gene82878	0.883175	5.60E-71	-1.69E-46
MS.gene059676	MS.gene82878	0.814274	1.67E-51	-1.69E-46
MS.gene059677	MS.gene82878	0.875768	2.37E-68	-1.69E-46
MS.gene059688	MS.gene82878	0.829359	5.38E-55	-1.69E-46
MS.gene059692	MS.gene82878	0.808737	2.67E-50	-1.69E-46
MS.gene059695	MS.gene82878	0.817048	4.04E-52	-1.69E-46
MS.gene059711	MS.gene82878	0.830507	2.82E-55	-1.69E-46
MS.gene059718	MS.gene82878	0.887302	1.61E-72	-1.69E-46
MS.gene059756	MS.gene82878	0.865581	5.32E-65	-1.69E-46
MS.gene059801	MS.gene82878	0.835578	1.55E-56	-1.69E-46
MS.gene059865	MS.gene82878	0.840044	1.10E-57	-1.69E-46
MS.gene059902	MS.gene82878	0.863189	2.97E-64	-1.69E-46
MS.gene059960	MS.gene82878	0.893218	7.71E-75	-1.69E-46
MS.gene060193	MS.gene82878	0.875967	2.03E-68	-1.69E-46
MS.gene060356	MS.gene82878	0.813181	2.91E-51	-1.69E-46
MS.gene060403	MS.gene82878	0.837936	3.87E-57	-1.69E-46
MS.gene060482	MS.gene82878	0.87568	2.55E-68	-1.69E-46
MS.gene060703	MS.gene82878	0.804095	2.55E-49	-1.69E-46
MS.gene060728	MS.gene82878	0.805139	1.54E-49	-1.69E-46
MS.gene060762	MS.gene82878	0.835691	1.45E-56	-1.69E-46
MS.gene06077	MS.gene82878	0.856232	3.70E-62	-1.69E-46
MS.gene060804	MS.gene82878	0.864062	1.59E-64	-1.69E-46
MS.gene060818	MS.gene82878	0.840655	7.63E-58	-1.69E-46
MS.gene060835	MS.gene82878	0.843419	1.42E-58	-1.69E-46
MS.gene060837	MS.gene82878	0.851834	6.86E-61	-1.69E-46
MS.gene06092	MS.gene82878	0.894291	2.83E-75	-1.69E-46
MS.gene06097	MS.gene82878	0.813156	2.95E-51	-1.69E-46
MS.gene060982	MS.gene82878	0.823098	1.66E-53	-1.69E-46
MS.gene061041	MS.gene82878	0.832419	9.55E-56	-1.69E-46
MS.gene061051	MS.gene82878	-0.806612	7.56E-50	-1.69E-46
MS.gene061134	MS.gene82878	0.846192	2.54E-59	-1.69E-46
MS.gene061150	MS.gene82878	0.888717	4.61E-73	-1.69E-46
MS.gene061171	MS.gene82878	0.840291	9.50E-58	-1.69E-46
MS.gene061200	MS.gene82878	0.931077	6.43E-94	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene82878	MS.gene053009	PPI
MS.gene82878	MS.gene032576	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82878.t1	MTR_6g006060	96.133	181	6	1	1	180	1	181	4.23e-119	334
MS.gene82878.t1	MTR_8g076780	31.937	191	102	5	14	179	7	194	1.74e-16	73.9
MS.gene82878.t1	MTR_7g053520	34.351	131	76	2	59	179	86	216	1.29e-14	69.3
MS.gene82878.t1	MTR_2g031960	32.867	143	86	3	47	179	12	154	4.18e-14	66.6
MS.gene82878.t1	MTR_2g031760	49.254	67	34	0	109	175	119	185	2.69e-13	65.5
MS.gene82878.t1	MTR_2g064300	33.333	132	76	2	59	179	85	215	6.20e-13	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82878.t1	AT3G27850	59.239	184	69	3	1	180	6	187	1.76e-52	166
MS.gene82878.t1	AT3G27830	69.231	143	40	2	42	180	49	191	6.14e-51	162
MS.gene82878.t1	AT3G27830	69.231	143	40	2	42	180	49	191	6.14e-51	162
MS.gene82878.t1	AT3G27840	50.898	167	64	3	31	179	26	192	5.79e-44	144
MS.gene82878.t1	AT4G36420	36.301	146	79	3	48	179	33	178	5.33e-18	77.4
MS.gene82878.t1	AT3G06040	46.667	75	40	0	101	175	107	181	5.32e-13	64.3
MS.gene82878.t1	AT3G06040	46.667	75	40	0	101	175	107	181	5.32e-13	64.3
MS.gene82878.t1	AT3G06040	46.667	75	40	0	101	175	107	181	5.32e-13	64.3
MS.gene82878.t1	AT1G70190	34.074	135	75	2	59	179	73	207	9.49e-13	64.3
MS.gene82878.t1	AT1G70190	34.074	135	75	2	59	179	73	207	9.49e-13	64.3
MS.gene82878.t1	AT4G37660	32.258	155	92	3	38	179	12	166	1.31e-12	63.2

Find 52 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTAGAGCTTTAACGAGTT+TGG	0.267140	6.1:-1575594	MS.gene82878:CDS
GTGGGAGATGGAGAGGGGTT+TGG	0.285418	6.1:+1575886	None:intergenic
GAGGTAGTCGACGAGGTCTT+TGG	0.313141	6.1:+1575772	None:intergenic
TTCAATTACCACATCGAATT+CGG	0.338695	6.1:+1575655	None:intergenic
TTCTTCGACTACTGCGACTT+CGG	0.340678	6.1:+1575682	None:intergenic
GGAGATGGAGAGGGGTTTGG+AGG	0.359975	6.1:+1575889	None:intergenic
GTTAGAGCTTTAACGAGTTT+GGG	0.364862	6.1:-1575593	MS.gene82878:CDS
AGATGGAGAGGGGTTTGGAG+GGG	0.389473	6.1:+1575891	None:intergenic
ACACCTTCTTTAAATTTCTT+CGG	0.390394	6.1:+1575536	None:intergenic
GGAGACGAGTGCGGTGGTGG+TGG	0.390691	6.1:+1575867	None:intergenic
GGTGGTGGTGGGAGATGGAG+AGG	0.392248	6.1:+1575879	None:intergenic
TGGTGGTGGGAGATGGAGAG+GGG	0.394112	6.1:+1575881	None:intergenic
AGCGGCGACAGTGGCGGCGG+CGG	0.407686	6.1:+1575712	None:intergenic
GCCGCAATTCTCGCGTTACT+AGG	0.408930	6.1:+1575626	None:intergenic
GTCGACGAGGTCTTTGGCTT+GGG	0.415248	6.1:+1575778	None:intergenic
TTCAGTGGCCACGGCGGAGA+TGG	0.416551	6.1:+1575841	None:intergenic
GCGGCGACAGTGGCGGCGGC+GGG	0.421106	6.1:+1575713	None:intergenic
GGCGGCGGGAGCGAAGGAAG+CGG	0.431011	6.1:+1575727	None:intergenic
AGTGCGGTGGTGGTGGGAGA+TGG	0.438739	6.1:+1575874	None:intergenic
GTGGTGGTGGGAGATGGAGA+GGG	0.450215	6.1:+1575880	None:intergenic
TGGAGCGGCGACAGTGGCGG+CGG	0.453386	6.1:+1575709	None:intergenic
AGTCGACGAGGTCTTTGGCT+TGG	0.457705	6.1:+1575777	None:intergenic
GAAGCGAAGGAATTGATTGA+AGG	0.470442	6.1:-1575563	MS.gene82878:CDS
GGCTGGAGCGGCGACAGTGG+CGG	0.474590	6.1:+1575706	None:intergenic
TTTGGAGGGGAGATTGAGAG+TGG	0.477307	6.1:+1575904	None:intergenic
ACTACTGCGACTTCGGCGGC+TGG	0.482100	6.1:+1575689	None:intergenic
GAGATGGAGAGGGGTTTGGA+GGG	0.482993	6.1:+1575890	None:intergenic
GACGGAGACGAGTGCGGTGG+TGG	0.484373	6.1:+1575864	None:intergenic
TGCGACTTCGGCGGCTGGAG+CGG	0.489099	6.1:+1575694	None:intergenic
AGTGGCGGCGGCGGGAGCGA+AGG	0.497332	6.1:+1575721	None:intergenic
TTGCCGAAGAAATTTAAAGA+AGG	0.505106	6.1:-1575539	MS.gene82878:CDS
TCAGTGGCCACGGCGGAGAT+GGG	0.542642	6.1:+1575842	None:intergenic
TCCTAGTAACGCGAGAATTG+CGG	0.544335	6.1:-1575627	MS.gene82878:CDS
GAGACGAGTGCGGTGGTGGT+GGG	0.552373	6.1:+1575868	None:intergenic
GTGGTGAGAAAGTGTGAGGG+TGG	0.553869	6.1:+1575952	None:intergenic
GGCGGCTGGAGCGGCGACAG+TGG	0.556006	6.1:+1575703	None:intergenic
GGCTTGGGAGAGAGTGAGGT+CGG	0.562669	6.1:+1575793	None:intergenic
AAGAAACAACTTGAAGCTGC+AGG	0.564071	6.1:-1575488	MS.gene82878:CDS
TGGCCACGGCGGAGATGGGA+CGG	0.564429	6.1:+1575846	None:intergenic
CTTTGGCTTGGGAGAGAGTG+AGG	0.572512	6.1:+1575789	None:intergenic
GGCGGGAGCGAAGGAAGCGG+CGG	0.574913	6.1:+1575730	None:intergenic
GGTGTGGTGAGAAAGTGTGA+GGG	0.597396	6.1:+1575949	None:intergenic
GGGTGTGGTGAGAAAGTGTG+AGG	0.603340	6.1:+1575948	None:intergenic
TTTGGGATTGAAAGAAGCGA+AGG	0.613094	6.1:-1575576	MS.gene82878:CDS
TTCGACTACTGCGACTTCGG+CGG	0.637460	6.1:+1575685	None:intergenic
GAGAATTGCGGCGATTAAAG+CGG	0.638455	6.1:-1575615	MS.gene82878:CDS
TTCTATTTCAGTGGCCACGG+CGG	0.638885	6.1:+1575835	None:intergenic
GGTGGAGATAGTTGTGAAAG+CGG	0.640687	6.1:+1575970	None:intergenic
TCTCCGTCCCATCTCCGCCG+TGG	0.646628	6.1:-1575849	MS.gene82878:CDS
AGATGGGACGGAGACGAGTG+CGG	0.648615	6.1:+1575858	None:intergenic
TTTCTTGGAGGTAGTCGACG+AGG	0.676894	6.1:+1575765	None:intergenic
TGGGACGGAGACGAGTGCGG+TGG	0.682439	6.1:+1575861	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ACACCTTCTTTAAATTTCTT+CGG	+	chr6.1:1575919-1575938	None:intergenic	25.0%
	TTCAATTACCACATCGAATT+CGG	+	chr6.1:1575800-1575819	None:intergenic	30.0%
	TTGCCGAAGAAATTTAAAGA+AGG	-	chr6.1:1575913-1575932	MS.gene82878:CDS	30.0%
!!!	AGATTGATTTTTTTGAGAGG+GGG	+	chr6.1:1575528-1575547	None:intergenic	30.0%
!!!	GAGATTGATTTTTTTGAGAG+GGG	+	chr6.1:1575529-1575548	None:intergenic	30.0%
!!!	GGAGATTGATTTTTTTGAGA+GGG	+	chr6.1:1575530-1575549	None:intergenic	30.0%
!!!	TGGAGATTGATTTTTTTGAG+AGG	+	chr6.1:1575531-1575550	None:intergenic	30.0%
	AGAAAAAACCGAATTCGATG+TGG	-	chr6.1:1575789-1575808	MS.gene82878:CDS	35.0%
	GCCACTGAAATAGAAAAACT+CGG	-	chr6.1:1575625-1575644	MS.gene82878:CDS	35.0%
!	GTTAGAGCTTTAACGAGTTT+GGG	-	chr6.1:1575859-1575878	MS.gene82878:CDS	35.0%
!	TTTTTCTATTTCAGTGGCCA+CGG	+	chr6.1:1575623-1575642	None:intergenic	35.0%
!!!	GATTGATTTTTTTGAGAGGG+GGG	+	chr6.1:1575527-1575546	None:intergenic	35.0%
	AAGAAACAACTTGAAGCTGC+AGG	-	chr6.1:1575964-1575983	MS.gene82878:CDS	40.0%
	GAAGCGAAGGAATTGATTGA+AGG	-	chr6.1:1575889-1575908	MS.gene82878:CDS	40.0%
	GACTACCTCCAAGAAAAACT+CGG	-	chr6.1:1575694-1575713	MS.gene82878:CDS	40.0%
!	GCCGAGTTTTTCTATTTCAG+TGG	+	chr6.1:1575629-1575648	None:intergenic	40.0%
!	GGTTAGAGCTTTAACGAGTT+TGG	-	chr6.1:1575858-1575877	MS.gene82878:CDS	40.0%
!	TTTGGGATTGAAAGAAGCGA+AGG	-	chr6.1:1575876-1575895	MS.gene82878:CDS	40.0%
	GAGAATTGCGGCGATTAAAG+CGG	-	chr6.1:1575837-1575856	MS.gene82878:CDS	45.0%
	GGTGGAGATAGTTGTGAAAG+CGG	+	chr6.1:1575485-1575504	None:intergenic	45.0%
	TCCTAGTAACGCGAGAATTG+CGG	-	chr6.1:1575825-1575844	MS.gene82878:CDS	45.0%
	TTCTTCGACTACTGCGACTT+CGG	+	chr6.1:1575773-1575792	None:intergenic	45.0%
!!!	ATTTTTTTGAGAGGGGGGTG+TGG	+	chr6.1:1575522-1575541	None:intergenic	45.0%
	TTCTATTTCAGTGGCCACGG+CGG	+	chr6.1:1575620-1575639	None:intergenic	50.0%
	TTTCTTGGAGGTAGTCGACG+AGG	+	chr6.1:1575690-1575709	None:intergenic	50.0%
	TTTGGAGGGGAGATTGAGAG+TGG	+	chr6.1:1575551-1575570	None:intergenic	50.0%
!	GGTGTGGTGAGAAAGTGTGA+GGG	+	chr6.1:1575506-1575525	None:intergenic	50.0%
!	TGACGCCGAGTTTTTCTTGG+AGG	+	chr6.1:1575702-1575721	None:intergenic	50.0%
	AGATGGAGAGGGGTTTGGAG+GGG	+	chr6.1:1575564-1575583	None:intergenic	55.0%
	AGTCGACGAGGTCTTTGGCT+TGG	+	chr6.1:1575678-1575697	None:intergenic	55.0%
	GAGATGGAGAGGGGTTTGGA+GGG	+	chr6.1:1575565-1575584	None:intergenic	55.0%
	GAGGTAGTCGACGAGGTCTT+TGG	+	chr6.1:1575683-1575702	None:intergenic	55.0%
	GCCGCAATTCTCGCGTTACT+AGG	+	chr6.1:1575829-1575848	None:intergenic	55.0%
	TTCGACTACTGCGACTTCGG+CGG	+	chr6.1:1575770-1575789	None:intergenic	55.0%
!	CGGTGACGCCGAGTTTTTCT+TGG	+	chr6.1:1575705-1575724	None:intergenic	55.0%
!	GGGTGTGGTGAGAAAGTGTG+AGG	+	chr6.1:1575507-1575526	None:intergenic	55.0%
!	GTCGACGAGGTCTTTGGCTT+GGG	+	chr6.1:1575677-1575696	None:intergenic	55.0%
!	GTGGTGAGAAAGTGTGAGGG+TGG	+	chr6.1:1575503-1575522	None:intergenic	55.0%
!!	CTTTGGCTTGGGAGAGAGTG+AGG	+	chr6.1:1575666-1575685	None:intergenic	55.0%
	AGATGGGACGGAGACGAGTG+CGG	+	chr6.1:1575597-1575616	None:intergenic	60.0%
	GGAGATGGAGAGGGGTTTGG+AGG	+	chr6.1:1575566-1575585	None:intergenic	60.0%
	GGCTTGGGAGAGAGTGAGGT+CGG	+	chr6.1:1575662-1575681	None:intergenic	60.0%
	GTGGGAGATGGAGAGGGGTT+TGG	+	chr6.1:1575569-1575588	None:intergenic	60.0%
!!	GTGGTGGTGGGAGATGGAGA+GGG	+	chr6.1:1575575-1575594	None:intergenic	60.0%
!!	TGGTGGTGGGAGATGGAGAG+GGG	+	chr6.1:1575574-1575593	None:intergenic	60.0%
	ACTACTGCGACTTCGGCGGC+TGG	+	chr6.1:1575766-1575785	None:intergenic	65.0%
	TCAGTGGCCACGGCGGAGAT+GGG	+	chr6.1:1575613-1575632	None:intergenic	65.0%
	TTCAGTGGCCACGGCGGAGA+TGG	+	chr6.1:1575614-1575633	None:intergenic	65.0%
!	GAGACGAGTGCGGTGGTGGT+GGG	+	chr6.1:1575587-1575606	None:intergenic	65.0%
!!	AGTGCGGTGGTGGTGGGAGA+TGG	+	chr6.1:1575581-1575600	None:intergenic	65.0%
!!	GGTGGTGGTGGGAGATGGAG+AGG	+	chr6.1:1575576-1575595	None:intergenic	65.0%
	GACGGAGACGAGTGCGGTGG+TGG	+	chr6.1:1575591-1575610	None:intergenic	70.0%
	TCTCCGTCCCATCTCCGCCG+TGG	-	chr6.1:1575603-1575622	MS.gene82878:CDS	70.0%
	TGCGACTTCGGCGGCTGGAG+CGG	+	chr6.1:1575761-1575780	None:intergenic	70.0%
	TGGCCACGGCGGAGATGGGA+CGG	+	chr6.1:1575609-1575628	None:intergenic	70.0%
	TGGGACGGAGACGAGTGCGG+TGG	+	chr6.1:1575594-1575613	None:intergenic	70.0%
!	GGAGACGAGTGCGGTGGTGG+TGG	+	chr6.1:1575588-1575607	None:intergenic	70.0%
	GGCGGCGGGAGCGAAGGAAG+CGG	+	chr6.1:1575728-1575747	None:intergenic	75.0%
	GGCGGGAGCGAAGGAAGCGG+CGG	+	chr6.1:1575725-1575744	None:intergenic	75.0%
	GGCTGGAGCGGCGACAGTGG+CGG	+	chr6.1:1575749-1575768	None:intergenic	75.0%
	TGGAGCGGCGACAGTGGCGG+CGG	+	chr6.1:1575746-1575765	None:intergenic	75.0%
!	AGCGGCGACAGTGGCGGCGG+CGG	+	chr6.1:1575743-1575762	None:intergenic	80.0%
!	AGTGGCGGCGGCGGGAGCGA+AGG	+	chr6.1:1575734-1575753	None:intergenic	80.0%
!	GGCGGCTGGAGCGGCGACAG+TGG	+	chr6.1:1575752-1575771	None:intergenic	80.0%
!	GCGGCGACAGTGGCGGCGGC+GGG	+	chr6.1:1575742-1575761	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	1575466	1576008	1575466	ID=MS.gene82878
chr6.1	mRNA	1575466	1576008	1575466	ID=MS.gene82878.t1;Parent=MS.gene82878
chr6.1	exon	1575466	1576008	1575466	ID=MS.gene82878.t1.exon1;Parent=MS.gene82878.t1
chr6.1	CDS	1575466	1576008	1575466	ID=cds.MS.gene82878.t1;Parent=MS.gene82878.t1

Gene Sequence

>MS.gene82878

ATGGCATTATCAACAACCGCTTTCACAACTATCTCCACCCTCACACTTTCTCACCACACCCCCCTCTCAAAAAAATCAATCTCCACTCTCAATCTCCCCTCCAAACCCCTCTCCATCTCCCACCACCACCGCACTCGTCTCCGTCCCATCTCCGCCGTGGCCACTGAAATAGAAAAACTCGGCAACGACATCTCCGACCTCACTCTCTCCCAAGCCAAAGACCTCGTCGACTACCTCCAAGAAAAACTCGGCGTCACCGCCGCTTCCTTCGCTCCCGCCGCCGCCACTGTCGCCGCTCCAGCCGCCGAAGTCGCAGTAGTCGAAGAAAAAACCGAATTCGATGTGGTAATTGAAGATGTTCCTAGTAACGCGAGAATTGCGGCGATTAAAGCGGTTAGAGCTTTAACGAGTTTGGGATTGAAAGAAGCGAAGGAATTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGTGTGAGTAAAGATGAAGCTGATGATGCTAAGAAACAACTTGAAGCTGCAGGTGCTAAAGTTACTATTGCTTAA

Protein sequence

>MS.gene82878.t1

MALSTTAFTTISTLTLSHHTPLSKKSISTLNLPSKPLSISHHHRTRLRPISAVATEIEKLGNDISDLTLSQAKDLVDYLQEKLGVTAASFAPAAATVAAPAAEVAVVEEKTEFDVVIEDVPSNARIAAIKAVRALTSLGLKEAKELIEGLPKKFKEGVSKDEADDAKKQLEAAGAKVTIA