AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0245690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0245690 MtrunA17_Chr2g0299721 97.177 248 7 0 1 248 284 531 0.0 507
Msa0245690 MtrunA17_Chr7g0256421 41.810 232 125 4 1 229 258 482 4.91e-56 186
Msa0245690 MtrunA17_Chr2g0321641 40.517 232 128 4 1 229 258 482 3.70e-50 171
Msa0245690 MtrunA17_Chr2g0321661 38.261 230 132 4 1 230 252 471 6.57e-46 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0245690 AT5G57030.1 74.194 248 58 1 1 248 283 524 1.57e-135 392
Msa0245690 AT3G10230.2 39.224 232 133 2 1 229 124 350 6.08e-54 178
Msa0245690 AT3G10230.1 39.224 232 133 2 1 229 256 482 1.18e-52 178

Find 125 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACATTCTTAAGTTATT+TGG 0.177728 2_2:-25560476 None:intergenic
GCAAGGGACATTATTACTTA+TGG 0.259775 2_2:+25559348 Msa0245690:CDS
ATTTCCATTGGACGTTCTTA+TGG 0.263583 2_2:+25557286 Msa0245690:five_prime_UTR
GGAACCTTAATAGAGTTTAT+AGG 0.296541 2_2:+25560629 Msa0245690:three_prime_UTR
TCTTGTTAGGTACCCTGTAT+TGG 0.297570 2_2:+25560585 Msa0245690:three_prime_UTR
TAAGGAGAAAGAAGATTTGT+TGG 0.300230 2_2:+25554508 Msa0245690:five_prime_UTR
GTACTAGATCTAGTCGTTAT+TGG 0.302963 2_2:+25556689 Msa0245690:five_prime_UTR
GGATTAAAAGTTGGACTTAT+TGG 0.306867 2_2:+25556758 Msa0245690:five_prime_UTR
CTTGTTAGGTACCCTGTATT+GGG 0.312888 2_2:+25560586 Msa0245690:three_prime_UTR
GTTGCATCAGGAGCAGCTTC+AGG 0.332490 2_2:+25557721 Msa0245690:five_prime_UTR
GCAATCTAAGCTTGCGGATA+AGG 0.335468 2_2:+25554719 Msa0245690:five_prime_UTR
ATAACCTATAAACTCTATTA+AGG 0.336233 2_2:-25560633 None:intergenic
CTTGCTCTAGCTGCTGAATC+TGG 0.361407 2_2:+25556728 Msa0245690:five_prime_UTR
GTGTGGGAGGACGAATTTAA+AGG 0.371750 2_2:+25556812 Msa0245690:five_prime_UTR
CAGTTGCCACCTATCTCTAT+TGG 0.372211 2_2:+25556659 Msa0245690:intron
GCTGCTGAATCTGGCAAGTT+AGG 0.372390 2_2:+25556737 Msa0245690:five_prime_UTR
AGGATGTGGCAAGGATTTCT+TGG 0.374365 2_2:+25560395 Msa0245690:intron
ACTTGATTACCTCGCATTGA+TGG 0.382440 2_2:-25559387 None:intergenic
AACTATTGCAGTATGAGGTT+GGG 0.384949 2_2:+25557746 Msa0245690:five_prime_UTR
TAAGTCCTTCTTTGAGGTTA+AGG 0.389115 2_2:+25554490 Msa0245690:five_prime_UTR
AAGCTTCATCGAACGCGATT+CGG 0.396752 2_2:+25554541 Msa0245690:five_prime_UTR
TTTGCATAAGTCCTTCTTTG+AGG 0.398446 2_2:+25554484 Msa0245690:five_prime_UTR
CTCCCTTTCACAAACAACTA+TGG 0.400540 2_2:+25556788 Msa0245690:five_prime_UTR
GAGCAGAAGAACCTTGCATT+TGG 0.402078 2_2:+25559137 Msa0245690:CDS
TCTAGCCTGTCTCCCAATAC+AGG 0.402133 2_2:-25560598 None:intergenic
GCTGTTTGTACACACACCTT+TGG 0.403522 2_2:-25557772 None:intergenic
GAGACAGGCTAGATTACATT+AGG 0.406678 2_2:+25560608 Msa0245690:three_prime_UTR
TTTGGTAAGGATCCACCAAC+TGG 0.407219 2_2:-25559110 None:intergenic
CTCTGTTGTGAGATCGTTGT+CGG 0.407519 2_2:+25559275 Msa0245690:CDS
AGGTTCTTCTGCTCTGTGTT+TGG 0.409629 2_2:-25559128 None:intergenic
AAGGTTGTATTGAGCATGTT+TGG 0.411470 2_2:+25557227 Msa0245690:five_prime_UTR
ATTTCAGGTCTTGGACTTGA+AGG 0.411475 2_2:+25557208 Msa0245690:intron
ATAAGAACGTCCAATGGAAA+TGG 0.413201 2_2:-25557284 None:intergenic
CCAATCGCAGGAAACATGTT+TGG 0.416127 2_2:+25558413 Msa0245690:intron
TCCATGAAAACCATCACGTT+TGG 0.421212 2_2:-25558217 None:intergenic
GAGTCAGGTGTCTCGTATAT+TGG 0.421606 2_2:+25557469 Msa0245690:intron
CTTCTGCTCTGTGTTTGGTA+AGG 0.425336 2_2:-25559123 None:intergenic
CGTTTAACTGCTTAGAATCA+TGG 0.426911 2_2:-25554389 None:intergenic
ACCATCACGTTTGGATCATA+AGG 0.427701 2_2:-25558208 None:intergenic
GATCTAGTCGTTATTGGTTG+TGG 0.430410 2_2:+25556695 Msa0245690:five_prime_UTR
AAACTATTGCAGTATGAGGT+TGG 0.434728 2_2:+25557745 Msa0245690:five_prime_UTR
CTCTGTCGTTTCCTTTCTTG+TGG 0.445396 2_2:-25559660 None:intergenic
TGTGGCTGGATGCACCATGC+TGG 0.447091 2_2:-25559168 None:intergenic
TCCTACAAAAGTGTTCTTTG+AGG 0.454180 2_2:+25558318 Msa0245690:CDS
ACTCCATCTCCAATAGAGAT+AGG 0.454988 2_2:-25556668 None:intergenic
TGTTGAAACGACGACGTAGA+AGG 0.459097 2_2:-25554350 None:intergenic
ATTAGCACTAATTGTTCAGC+TGG 0.466025 2_2:+25559701 Msa0245690:CDS
AGGCTTGCTACTGTTGCATC+AGG 0.467316 2_2:+25557709 Msa0245690:intron
GGCATTGCATAAAGAAATGT+TGG 0.467739 2_2:-25558289 None:intergenic
CACCATAGTTGTTTGTGAAA+GGG 0.468395 2_2:-25556790 None:intergenic
TTGCATCAGGAGCAGCTTCA+GGG 0.474105 2_2:+25557722 Msa0245690:five_prime_UTR
TATTACTTATGGAAGAAGTA+AGG 0.477112 2_2:+25559359 Msa0245690:CDS
AGGGAAACTATTGCAGTATG+AGG 0.481433 2_2:+25557741 Msa0245690:five_prime_UTR
GTTATTGGTTGTGGTCCTGC+TGG 0.481480 2_2:+25556704 Msa0245690:five_prime_UTR
GAGTTGTGTTGTTGCTAAAG+AGG 0.481683 2_2:+25554611 Msa0245690:five_prime_UTR
GCAGCTAGAGCAAGACCAGC+AGG 0.483198 2_2:-25556719 None:intergenic
TTTCTCCTTAACCTCAAAGA+AGG 0.487945 2_2:-25554495 None:intergenic
GACGATGTCATGCCTGTGGC+TGG 0.488215 2_2:-25559182 None:intergenic
TTTCAGCTTGGAATACACTT+TGG 0.490728 2_2:+25559637 Msa0245690:intron
ACTATTGCAGTATGAGGTTG+GGG 0.493808 2_2:+25557747 Msa0245690:five_prime_UTR
ATTGTTCAGCTGGACATTGA+AGG 0.495105 2_2:+25559711 Msa0245690:CDS
AAAAGTTGGACTTATTGGTC+CGG 0.495439 2_2:+25556763 Msa0245690:five_prime_UTR
TAAGAACGTCCAATGGAAAT+GGG 0.501224 2_2:-25557283 None:intergenic
AGCATGGTGCATCCAGCCAC+AGG 0.501582 2_2:+25559170 Msa0245690:CDS
CGTTGGAGCGAGAAACTTAA+CGG 0.502128 2_2:+25554452 Msa0245690:five_prime_UTR
CATCTGCTTTCAGATCCTAC+AGG 0.507194 2_2:+25560506 Msa0245690:CDS
GGTACCCTGTATTGGGAGAC+AGG 0.508224 2_2:+25560593 Msa0245690:three_prime_UTR
GGCAAGTTAGGATTAAAAGT+TGG 0.508773 2_2:+25556749 Msa0245690:five_prime_UTR
CTTTAATAAATCAAAAGGCA+TGG 0.510757 2_2:-25558448 None:intergenic
TGGTCTTACATCCCAGTTGG+TGG 0.511039 2_2:+25559098 Msa0245690:CDS
TTATCAAGATTAAATACGAT+GGG 0.511081 2_2:+25558480 Msa0245690:CDS
TATGCGAAAGCAAGTGGTGC+AGG 0.512407 2_2:+25554582 Msa0245690:five_prime_UTR
ATGATACTGTAGTGCCCTGC+AGG 0.512630 2_2:+25557551 Msa0245690:five_prime_UTR
TTGTTTGTGAAAGGGAGATC+CGG 0.515364 2_2:-25556782 None:intergenic
ATACACTTTGGCCACAAGAA+AGG 0.516208 2_2:+25559649 Msa0245690:CDS
GTGTGTGTACAAACAGCTTA+TGG 0.517947 2_2:+25557778 Msa0245690:five_prime_UTR
TTCACGAGGAATTGTTAAGA+AGG 0.518256 2_2:+25557329 Msa0245690:five_prime_UTR
TTGTATTGAGCATGTTTGGA+AGG 0.520513 2_2:+25557231 Msa0245690:five_prime_UTR
CCACCTATCTCTATTGGAGA+TGG 0.520907 2_2:+25556665 Msa0245690:five_prime_UTR
ACACCATAGTTGTTTGTGAA+AGG 0.521405 2_2:-25556791 None:intergenic
CAGGTAAGCAGAAGAAAGTA+CGG 0.527877 2_2:-25559749 None:intergenic
TTCGTTACAATGGAGTGCGT+TGG 0.541968 2_2:+25554435 Msa0245690:five_prime_UTR
AACACTGATCTTCGTTACAA+TGG 0.551274 2_2:+25554425 Msa0245690:five_prime_UTR
ATTTGGCGCAGCTGCCAGCA+TGG 0.551624 2_2:+25559154 Msa0245690:CDS
GTTCTTATGGCCGTGTCAGT+CGG 0.553276 2_2:+25557299 Msa0245690:five_prime_UTR
CTTTCTTCTGCTTACCTGAG+TGG 0.554996 2_2:+25559754 Msa0245690:CDS
TGGCAGCTGCGCCAAATGCA+AGG 0.557166 2_2:-25559148 None:intergenic
AGCTTATGGTGTAGAAGTTG+AGG 0.559971 2_2:+25557792 Msa0245690:five_prime_UTR
AGCGAGAAACTTAACGGCAA+TGG 0.580164 2_2:+25554458 Msa0245690:five_prime_UTR
CACAAACAACTATGGTGTGT+GGG 0.580409 2_2:+25556796 Msa0245690:five_prime_UTR
CACACGTTCAACACAGCACA+AGG 0.580909 2_2:-25560710 None:intergenic
CTTATCAAGATTAAATACGA+TGG 0.585453 2_2:+25558479 Msa0245690:CDS
ATATTGGCTCAAAAGTAGAA+AGG 0.586106 2_2:+25557485 Msa0245690:five_prime_UTR
TTTATCATAGTTGACCCTGT+AGG 0.596255 2_2:-25560521 None:intergenic
TCCTTATGATCCAAACGTGA+TGG 0.596727 2_2:+25558207 Msa0245690:exon
GAAGCAAATGCCGACTGACA+CGG 0.598268 2_2:-25557309 None:intergenic
TAAAGAGGATTATGCTGATG+AGG 0.600491 2_2:+25554626 Msa0245690:five_prime_UTR
CAGTCGGCATTTGCTTCACG+AGG 0.606687 2_2:+25557315 Msa0245690:five_prime_UTR
AACGTACTATATCGTCAAGT+AGG 0.606795 2_2:-25560546 None:intergenic
TCACAAACAACTATGGTGTG+TGG 0.608110 2_2:+25556795 Msa0245690:five_prime_UTR
AGTTACGAAAACTTATGAAG+AGG 0.608330 2_2:+25558509 Msa0245690:CDS
GAGTGGTCTTACATCCCAGT+TGG 0.611292 2_2:+25559095 Msa0245690:CDS
TTTATTATCAATATATACAA+CGG 0.613565 2_2:-25557257 None:intergenic
TTTGAATGACGGTAATGCAA+GGG 0.614670 2_2:+25559332 Msa0245690:CDS
CTAGCCTGTCTCCCAATACA+GGG 0.617031 2_2:-25560597 None:intergenic
GGATTTGCAATCTAAGCTTG+CGG 0.617671 2_2:+25554713 Msa0245690:five_prime_UTR
GCATGCAAATCGTACCTGCA+GGG 0.621177 2_2:-25557565 None:intergenic
AGGATTGTTGAGGCTAGCAA+TGG 0.625598 2_2:+25557505 Msa0245690:five_prime_UTR
GAAACGACGACGTAGAAGGT+TGG 0.628743 2_2:-25554346 None:intergenic
GCAATTACTGAAGCGTATTG+CGG 0.629269 2_2:-25559303 None:intergenic
ACGGCCATAAGAACGTCCAA+TGG 0.632741 2_2:-25557290 None:intergenic
AGAGGATTATGCTGATGAGG+AGG 0.633423 2_2:+25554629 Msa0245690:five_prime_UTR
ATCTGCTTTCAGATCCTACA+GGG 0.639178 2_2:+25560507 Msa0245690:CDS
TTGGTAAGGATCCACCAACT+GGG 0.640890 2_2:-25559109 None:intergenic
AAAAGTAGAAAGGATTGTTG+AGG 0.645770 2_2:+25557495 Msa0245690:five_prime_UTR
GAAAATAGACCATACCACTC+AGG 0.646689 2_2:-25559768 None:intergenic
AATACAGGGTACCTAACAAG+AGG 0.648747 2_2:-25560583 None:intergenic
AAACTGTATGCGAAAGCAAG+TGG 0.666138 2_2:+25554576 Msa0245690:five_prime_UTR
AAGGAGAATCCATCAATGCG+AGG 0.669695 2_2:+25559378 Msa0245690:CDS
CCATCTCCAATAGAGATAGG+TGG 0.670865 2_2:-25556665 None:intergenic
AAACAACTATGGTGTGTGGG+AGG 0.673871 2_2:+25556799 Msa0245690:five_prime_UTR
TATCAAGATTAAATACGATG+GGG 0.695831 2_2:+25558481 Msa0245690:CDS
AAACAATAGAAGATCTCTCG+AGG 0.702047 2_2:-25560429 None:intergenic
TTAACTGCTTAGAATCATGG+TGG 0.735856 2_2:-25554386 None:intergenic
CTATTGCAGTATGAGGTTGG+GGG 0.774566 2_2:+25557748 Msa0245690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTAATCAAAAAATAA+AGG - chr2_2:25555313-25555332 None:intergenic 10.0%
!! TTTATTATCAATATATACAA+CGG - chr2_2:25557260-25557279 None:intergenic 10.0%
!!! TTTTTGTTTGTTATAATTTT+AGG + chr2_2:25558174-25558193 Msa0245690:intron 10.0%
!!! TTTTTCTTTAATAAATCAAA+AGG - chr2_2:25558456-25558475 None:intergenic 10.0%
!! ATGAATTACAAATCTATAAA+AGG - chr2_2:25557427-25557446 None:intergenic 15.0%
!! GAAGTTTCAATATATAATAA+GGG - chr2_2:25557675-25557694 None:intergenic 15.0%
!! AGAAGTTTCAATATATAATA+AGG - chr2_2:25557676-25557695 None:intergenic 15.0%
!! ATTAAATGTATAAAATGTGA+TGG + chr2_2:25558126-25558145 Msa0245690:intron 15.0%
!! AAGTTACATGAATATGATAT+TGG + chr2_2:25555001-25555020 Msa0245690:intron 20.0%
!! GCAATTAAAATTGAGTTTAA+TGG - chr2_2:25555065-25555084 None:intergenic 20.0%
!!! TATAACATTTTGAGCTTAAT+TGG - chr2_2:25555187-25555206 None:intergenic 20.0%
!! AAATGTAAAGAACAATGTTA+TGG + chr2_2:25555328-25555347 Msa0245690:intron 20.0%
!! TATGTTCTGTCAATTTAAAA+TGG + chr2_2:25555439-25555458 Msa0245690:intron 20.0%
!! GTGTAGATATTTGAATTATA+TGG + chr2_2:25555549-25555568 Msa0245690:intron 20.0%
!! TTAAATTATTAAGGATGGAA+TGG + chr2_2:25556102-25556121 Msa0245690:intron 20.0%
!!! AAATGTGCTTTTTAAAGATA+TGG + chr2_2:25556232-25556251 Msa0245690:intron 20.0%
!!! GAAAATATATACTGTTTTCA+AGG - chr2_2:25557119-25557138 None:intergenic 20.0%
!!! TTATTTCTGAATTAACTTCT+TGG + chr2_2:25557384-25557403 Msa0245690:intron 20.0%
!!! AATTCATATTAATTTTCCCT+AGG + chr2_2:25557440-25557459 Msa0245690:intron 20.0%
!!! AAAATGTTTTCAAAAAGTGT+GGG + chr2_2:25557983-25558002 Msa0245690:intron 20.0%
!! TTATCAAGATTAAATACGAT+GGG + chr2_2:25558480-25558499 Msa0245690:CDS 20.0%
!! ATGGTTCTTTCTAAATTATA+TGG + chr2_2:25558657-25558676 Msa0245690:intron 20.0%
!! TGGTTCTTTCTAAATTATAT+GGG + chr2_2:25558658-25558677 Msa0245690:intron 20.0%
!!! TTTTATCTATACATTTGTGT+AGG + chr2_2:25559073-25559092 Msa0245690:intron 20.0%
!! AATACCAATTCTATGTTATT+TGG + chr2_2:25559934-25559953 Msa0245690:intron 20.0%
!! TTATCCAAATAACATAGAAT+TGG - chr2_2:25559941-25559960 None:intergenic 20.0%
!!! ATTCTATGTTATTTGGATAA+TGG + chr2_2:25559941-25559960 Msa0245690:intron 20.0%
!! TATAAAAACATGATAGTACA+AGG + chr2_2:25560047-25560066 Msa0245690:intron 20.0%
!! TGTGAAAAATCTAATATGAA+TGG + chr2_2:25560093-25560112 Msa0245690:intron 20.0%
!! GTGAAAAATCTAATATGAAT+GGG + chr2_2:25560094-25560113 Msa0245690:intron 20.0%
!! ATAACCTATAAACTCTATTA+AGG - chr2_2:25560636-25560655 None:intergenic 20.0%
! ATTTAATTAGTATACTCTGC+CGG + chr2_2:25554839-25554858 Msa0245690:intron 25.0%
! ACAATGTTATGGAATTACTT+TGG + chr2_2:25555339-25555358 Msa0245690:intron 25.0%
!! TGATTATTAATGAGAGTACA+AGG + chr2_2:25555786-25555805 Msa0245690:intron 25.0%
!! GATTATTAATGAGAGTACAA+GGG + chr2_2:25555787-25555806 Msa0245690:intron 25.0%
!! ATTATTAATGAGAGTACAAG+GGG + chr2_2:25555788-25555807 Msa0245690:intron 25.0%
! TCCATCCTTAATAATTTAAC+TGG - chr2_2:25556101-25556120 None:intergenic 25.0%
! TCAAGTATTACATGATACTT+GGG + chr2_2:25556256-25556275 Msa0245690:intron 25.0%
! AGTTCATTGCTTGAAAAAAA+TGG - chr2_2:25556469-25556488 None:intergenic 25.0%
! ATTAGAAAGATATAGCAAGA+AGG - chr2_2:25556841-25556860 None:intergenic 25.0%
! TCTATGGTTCATAAAAAGAA+GGG - chr2_2:25556948-25556967 None:intergenic 25.0%
! TTCTATGGTTCATAAAAAGA+AGG - chr2_2:25556949-25556968 None:intergenic 25.0%
! TCCATTAAATGAAATCTGTT+AGG - chr2_2:25557020-25557039 None:intergenic 25.0%
!! AACAGTATATATTTTCTTGC+TGG + chr2_2:25557123-25557142 Msa0245690:intron 25.0%
!! ACAGTATATATTTTCTTGCT+GGG + chr2_2:25557124-25557143 Msa0245690:intron 25.0%
! AAATTATAATGAAGTGCACT+TGG - chr2_2:25557192-25557211 None:intergenic 25.0%
!! TTCATTATAATTTCAGGTCT+TGG + chr2_2:25557199-25557218 Msa0245690:intron 25.0%
! AATAAAAATCCCATTTCCAT+TGG + chr2_2:25557274-25557293 Msa0245690:five_prime_UTR 25.0%
! AATATATAATAAGGGCAACA+TGG - chr2_2:25557667-25557686 None:intergenic 25.0%
!!! TACTGTTTTTATTAGACTGT+TGG + chr2_2:25557837-25557856 Msa0245690:intron 25.0%
!! GAAAATGTTTTCAAAAAGTG+TGG + chr2_2:25557982-25558001 Msa0245690:intron 25.0%
! ATGTTATGTTGTTAAAGACA+AGG - chr2_2:25558082-25558101 None:intergenic 25.0%
! CTTTAATAAATCAAAAGGCA+TGG - chr2_2:25558451-25558470 None:intergenic 25.0%
! CTTATCAAGATTAAATACGA+TGG + chr2_2:25558479-25558498 Msa0245690:CDS 25.0%
! TATCAAGATTAAATACGATG+GGG + chr2_2:25558481-25558500 Msa0245690:CDS 25.0%
! GTATTATCCTATATGGAAAA+TGG - chr2_2:25558732-25558751 None:intergenic 25.0%
!! TAACAGAGTATTATCCTATA+TGG - chr2_2:25558739-25558758 None:intergenic 25.0%
! AAGATATGTAATAGTAGGAT+AGG - chr2_2:25558790-25558809 None:intergenic 25.0%
! AGAGTAAGATATGTAATAGT+AGG - chr2_2:25558795-25558814 None:intergenic 25.0%
! ATTATACTGGAAAACATTGA+CGG + chr2_2:25558897-25558916 Msa0245690:intron 25.0%
!!! ACAAGTTATTTTAGTGCATT+TGG + chr2_2:25559016-25559035 Msa0245690:intron 25.0%
!!! TAATATCGTTTTTGTCCAAT+AGG + chr2_2:25559249-25559268 Msa0245690:intron 25.0%
!! ATTGCTACAATTTTGAATGA+CGG + chr2_2:25559321-25559340 Msa0245690:CDS 25.0%
! TATTACTTATGGAAGAAGTA+AGG + chr2_2:25559359-25559378 Msa0245690:CDS 25.0%
!! AAGCATAGTTTTCGTAATTT+TGG - chr2_2:25559459-25559478 None:intergenic 25.0%
!! ATTTTCTTTTTCTTTCAGCT+TGG + chr2_2:25559625-25559644 Msa0245690:intron 25.0%
!! CATATATGTCATAGATGTTT+TGG + chr2_2:25559794-25559813 Msa0245690:intron 25.0%
! AGAATTGGTATTATGAATTG+TGG - chr2_2:25559926-25559945 None:intergenic 25.0%
! TTTAGTGTTAACAATAAAGC+AGG - chr2_2:25559969-25559988 None:intergenic 25.0%
! AGTTAATCATCATTCCATTA+TGG - chr2_2:25560363-25560382 None:intergenic 25.0%
! AGAGACATTCTTAAGTTATT+TGG - chr2_2:25560479-25560498 None:intergenic 25.0%
!!! ATAAACTTTTTCCTCTTGTT+AGG + chr2_2:25560572-25560591 Msa0245690:three_prime_UTR 25.0%
TAAGGAGAAAGAAGATTTGT+TGG + chr2_2:25554508-25554527 Msa0245690:five_prime_UTR 30.0%
! TATTTTACACCTCAAGTTCA+TGG + chr2_2:25555039-25555058 Msa0245690:intron 30.0%
CTAGCTTATTTGAGCTTAAT+TGG - chr2_2:25555104-25555123 None:intergenic 30.0%
AAATGGTGTCTCATTTCTTT+AGG + chr2_2:25555517-25555536 Msa0245690:intron 30.0%
! ATGAAATTGTAGCTCCTTTT+AGG + chr2_2:25555572-25555591 Msa0245690:intron 30.0%
! TGAAATTGTAGCTCCTTTTA+GGG + chr2_2:25555573-25555592 Msa0245690:intron 30.0%
! AAAAAAATTATCGAGTTGCC+AGG + chr2_2:25555607-25555626 Msa0245690:intron 30.0%
! AAAAAATTATCGAGTTGCCA+GGG + chr2_2:25555608-25555627 Msa0245690:intron 30.0%
GAGTAATTTCTATTGTGACA+AGG + chr2_2:25555643-25555662 Msa0245690:intron 30.0%
AATTTCTATTGTGACAAGGA+TGG + chr2_2:25555647-25555666 Msa0245690:intron 30.0%
AAAATTTGATTGTACAGGGT+TGG - chr2_2:25555818-25555837 None:intergenic 30.0%
TCGCAAAATTTGATTGTACA+GGG - chr2_2:25555822-25555841 None:intergenic 30.0%
GGAGTTGTGATTTAAATTTG+AGG + chr2_2:25555989-25556008 Msa0245690:intron 30.0%
TGCAGCCAGTTAAATTATTA+AGG + chr2_2:25556093-25556112 Msa0245690:intron 30.0%
GCCAGTTAAATTATTAAGGA+TGG + chr2_2:25556097-25556116 Msa0245690:intron 30.0%
!!! TGGGACTAATGCATTTTTTA+GGG + chr2_2:25556205-25556224 Msa0245690:intron 30.0%
CTCAAGTATTACATGATACT+TGG + chr2_2:25556255-25556274 Msa0245690:intron 30.0%
CAAGTATTACATGATACTTG+GGG + chr2_2:25556257-25556276 Msa0245690:intron 30.0%
AAGTATTACATGATACTTGG+GGG + chr2_2:25556258-25556277 Msa0245690:intron 30.0%
AACAAGGTATAGATGATTTG+GGG - chr2_2:25556293-25556312 None:intergenic 30.0%
GAACAAGGTATAGATGATTT+GGG - chr2_2:25556294-25556313 None:intergenic 30.0%
AGAACAAGGTATAGATGATT+TGG - chr2_2:25556295-25556314 None:intergenic 30.0%
TTTATTCATAGAAAGAGCCA+TGG - chr2_2:25556320-25556339 None:intergenic 30.0%
GGATTAAAAGTTGGACTTAT+TGG + chr2_2:25556758-25556777 Msa0245690:five_prime_UTR 30.0%
GCCTAACAGATTTCATTTAA+TGG + chr2_2:25557016-25557035 Msa0245690:intron 30.0%
CAAGGACATAAATATCAAAC+TGG - chr2_2:25557101-25557120 None:intergenic 30.0%
GTGCACTTCATTATAATTTC+AGG + chr2_2:25557193-25557212 Msa0245690:intron 30.0%
!! ATATTGGCTCAAAAGTAGAA+AGG + chr2_2:25557485-25557504 Msa0245690:five_prime_UTR 30.0%
AAAAGTAGAAAGGATTGTTG+AGG + chr2_2:25557495-25557514 Msa0245690:five_prime_UTR 30.0%
AACTTCTGACCTGTTATTAT+AGG + chr2_2:25557689-25557708 Msa0245690:intron 30.0%
! ACAATCCAATCATATTTTGC+AGG - chr2_2:25557890-25557909 None:intergenic 30.0%
TACAATTTACCCGACTTATA+AGG - chr2_2:25558014-25558033 None:intergenic 30.0%
TATGTTGTTAAAGACAAGGA+AGG - chr2_2:25558078-25558097 None:intergenic 30.0%
AACAGAACTGCAATACTTAA+TGG - chr2_2:25558375-25558394 None:intergenic 30.0%
AGTTACGAAAACTTATGAAG+AGG + chr2_2:25558509-25558528 Msa0245690:CDS 30.0%
GAAAACTTATGAAGAGGTAA+GGG + chr2_2:25558515-25558534 Msa0245690:intron 30.0%
CTAGCAATAAACTTTCTAAC+AGG + chr2_2:25558575-25558594 Msa0245690:intron 30.0%
GTTCCACATAAATTTAGCAA+GGG + chr2_2:25558680-25558699 Msa0245690:intron 30.0%
! AAATTGATGACCAATAATCG+CGG - chr2_2:25558844-25558863 None:intergenic 30.0%
AGTATAATACATGCTTTCAG+CGG - chr2_2:25558885-25558904 None:intergenic 30.0%
TTATACTGGAAAACATTGAC+GGG + chr2_2:25558898-25558917 Msa0245690:intron 30.0%
AAAGGACAATTGGAAATCTA+GGG - chr2_2:25558955-25558974 None:intergenic 30.0%
ACTATTATGTAACAGCTCAA+AGG - chr2_2:25558973-25558992 None:intergenic 30.0%
TTGAGCTGTTACATAATAGT+TGG + chr2_2:25558973-25558992 Msa0245690:intron 30.0%
TGAGCTGTTACATAATAGTT+GGG + chr2_2:25558974-25558993 Msa0245690:intron 30.0%
! CATAGTTTTCGTAATTTTGG+AGG - chr2_2:25559456-25559475 None:intergenic 30.0%
AAAATGTCAGCTCTCAAATT+TGG - chr2_2:25559559-25559578 None:intergenic 30.0%
! CAGAGATCTTTCTTTCTTTT+TGG + chr2_2:25559678-25559697 Msa0245690:CDS 30.0%
AGATAGAAGATAGAATGTAG+TGG - chr2_2:25559866-25559885 None:intergenic 30.0%
CTACATTCTATCTTCTATCT+TGG + chr2_2:25559866-25559885 Msa0245690:intron 30.0%
TATGAATTGTGGCATTTCTT+CGG - chr2_2:25559915-25559934 None:intergenic 30.0%
! TATGAACTTTTGTGATCCTT+TGG + chr2_2:25560182-25560201 Msa0245690:intron 30.0%
!!! TTGTTATGGTTTTTAGCCAA+AGG - chr2_2:25560201-25560220 None:intergenic 30.0%
CATAAAGGTTAGTAGTATTC+AGG + chr2_2:25560231-25560250 Msa0245690:intron 30.0%
AATATCACAAGAAAGCAAAC+TGG - chr2_2:25560279-25560298 None:intergenic 30.0%
GCTTTCTTGTGATATTATTC+AGG + chr2_2:25560283-25560302 Msa0245690:intron 30.0%
! GCTTAATTTTATTCCCACTT+TGG + chr2_2:25560323-25560342 Msa0245690:intron 30.0%
TGATTGAAATTGCTCCATAA+TGG + chr2_2:25560346-25560365 Msa0245690:intron 30.0%
!! GATTAACTGATTTTTATCGC+AGG + chr2_2:25560375-25560394 Msa0245690:intron 30.0%
GGAACCTTAATAGAGTTTAT+AGG + chr2_2:25560629-25560648 Msa0245690:three_prime_UTR 30.0%
!!! CTTTTTTGAGAGGGATTGTA+TGG - chr2_2:25554324-25554343 None:intergenic 35.0%
TTAACTGCTTAGAATCATGG+TGG - chr2_2:25554389-25554408 None:intergenic 35.0%
CGTTTAACTGCTTAGAATCA+TGG - chr2_2:25554392-25554411 None:intergenic 35.0%
AACACTGATCTTCGTTACAA+TGG + chr2_2:25554425-25554444 Msa0245690:five_prime_UTR 35.0%
TTTGCATAAGTCCTTCTTTG+AGG + chr2_2:25554484-25554503 Msa0245690:five_prime_UTR 35.0%
!! TAAGTCCTTCTTTGAGGTTA+AGG + chr2_2:25554490-25554509 Msa0245690:five_prime_UTR 35.0%
TTTCTCCTTAACCTCAAAGA+AGG - chr2_2:25554498-25554517 None:intergenic 35.0%
TAAAGAGGATTATGCTGATG+AGG + chr2_2:25554626-25554645 Msa0245690:five_prime_UTR 35.0%
! TGATGAGGAGGATTTTGTTA+AGG + chr2_2:25554641-25554660 Msa0245690:five_prime_UTR 35.0%
AATGCAGCAGAAAAAGTCTA+TGG + chr2_2:25554692-25554711 Msa0245690:five_prime_UTR 35.0%
TTAAGCTCAAATAAGCTAGC+AGG + chr2_2:25555105-25555124 Msa0245690:intron 35.0%
!! TTTCTAGTTCCATCCCTAAA+AGG - chr2_2:25555589-25555608 None:intergenic 35.0%
! AAAAATTATCGAGTTGCCAG+GGG + chr2_2:25555609-25555628 Msa0245690:intron 35.0%
TATTGTGACAAGGATGGTTA+TGG + chr2_2:25555653-25555672 Msa0245690:intron 35.0%
CTCGCAAAATTTGATTGTAC+AGG - chr2_2:25555823-25555842 None:intergenic 35.0%
TGCGAGATTTAAGAATTCAC+TGG + chr2_2:25555837-25555856 Msa0245690:intron 35.0%
TGGTGTGATATCTCGTAAAA+AGG - chr2_2:25555937-25555956 None:intergenic 35.0%
TCAAGGACCAATTGCTAATT+GGG - chr2_2:25555961-25555980 None:intergenic 35.0%
TTCAAGGACCAATTGCTAAT+TGG - chr2_2:25555962-25555981 None:intergenic 35.0%
AATTAGCAATTGGTCCTTGA+AGG + chr2_2:25555961-25555980 Msa0245690:intron 35.0%
AATGGTGTGTTACAAAGGTT+AGG + chr2_2:25556120-25556139 Msa0245690:intron 35.0%
ATGGTGTGTTACAAAGGTTA+GGG + chr2_2:25556121-25556140 Msa0245690:intron 35.0%
CAAAATTAGCAATTGTGTGC+AGG + chr2_2:25556168-25556187 Msa0245690:intron 35.0%
TGCAGGTTCTATAAAGAAAG+TGG + chr2_2:25556185-25556204 Msa0245690:intron 35.0%
GCAGGTTCTATAAAGAAAGT+GGG + chr2_2:25556186-25556205 Msa0245690:intron 35.0%
!!! GTGGGACTAATGCATTTTTT+AGG + chr2_2:25556204-25556223 Msa0245690:intron 35.0%
!!! GGGACTAATGCATTTTTTAG+GGG + chr2_2:25556206-25556225 Msa0245690:intron 35.0%
!! TCAAGCACAAATTGTCGTTT+TGG + chr2_2:25556393-25556412 Msa0245690:intron 35.0%
GCATTGTTAACTTTCATGCA+CGG + chr2_2:25556438-25556457 Msa0245690:intron 35.0%
GTACTAGATCTAGTCGTTAT+TGG + chr2_2:25556689-25556708 Msa0245690:five_prime_UTR 35.0%
GGCAAGTTAGGATTAAAAGT+TGG + chr2_2:25556749-25556768 Msa0245690:five_prime_UTR 35.0%
AAAAGTTGGACTTATTGGTC+CGG + chr2_2:25556763-25556782 Msa0245690:five_prime_UTR 35.0%
CACCATAGTTGTTTGTGAAA+GGG - chr2_2:25556793-25556812 None:intergenic 35.0%
ACACCATAGTTGTTTGTGAA+AGG - chr2_2:25556794-25556813 None:intergenic 35.0%
GGGCAAAACTGAAATCATAA+GGG - chr2_2:25556928-25556947 None:intergenic 35.0%
AGGGCAAAACTGAAATCATA+AGG - chr2_2:25556929-25556948 None:intergenic 35.0%
!! CTCTAAGATCACTGTTTCTA+TGG - chr2_2:25556964-25556983 None:intergenic 35.0%
ATAATGAAGTGCACTTGGTA+AGG - chr2_2:25557187-25557206 None:intergenic 35.0%
AAGGTTGTATTGAGCATGTT+TGG + chr2_2:25557227-25557246 Msa0245690:five_prime_UTR 35.0%
TTGTATTGAGCATGTTTGGA+AGG + chr2_2:25557231-25557250 Msa0245690:five_prime_UTR 35.0%
TAAGAACGTCCAATGGAAAT+GGG - chr2_2:25557286-25557305 None:intergenic 35.0%
ATAAGAACGTCCAATGGAAA+TGG - chr2_2:25557287-25557306 None:intergenic 35.0%
ATTTCCATTGGACGTTCTTA+TGG + chr2_2:25557286-25557305 Msa0245690:five_prime_UTR 35.0%
TTCACGAGGAATTGTTAAGA+AGG + chr2_2:25557329-25557348 Msa0245690:five_prime_UTR 35.0%
AGTAGCAAGCCTATAATAAC+AGG - chr2_2:25557701-25557720 None:intergenic 35.0%
AAACTATTGCAGTATGAGGT+TGG + chr2_2:25557745-25557764 Msa0245690:five_prime_UTR 35.0%
AACTATTGCAGTATGAGGTT+GGG + chr2_2:25557746-25557765 Msa0245690:five_prime_UTR 35.0%
CATGGATAGACCAATACTTA+GGG - chr2_2:25558052-25558071 None:intergenic 35.0%
!! TCCTACAAAAGTGTTCTTTG+AGG + chr2_2:25558318-25558337 Msa0245690:CDS 35.0%
! ACCTCAAAGAACACTTTTGT+AGG - chr2_2:25558322-25558341 None:intergenic 35.0%
TATAGACAAATTCCAATCGC+AGG + chr2_2:25558401-25558420 Msa0245690:intron 35.0%
CGAAAACTTATGAAGAGGTA+AGG + chr2_2:25558514-25558533 Msa0245690:intron 35.0%
! GCTAGCTGTATTACATTTTG+AGG + chr2_2:25558548-25558567 Msa0245690:intron 35.0%
! TCAATTTTCAGCCAATAGGA+GGG - chr2_2:25558617-25558636 None:intergenic 35.0%
! TTCAATTTTCAGCCAATAGG+AGG - chr2_2:25558618-25558637 None:intergenic 35.0%
! CCATTCAATTTTCAGCCAAT+AGG - chr2_2:25558621-25558640 None:intergenic 35.0%
! CCTATTGGCTGAAAATTGAA+TGG + chr2_2:25558618-25558637 Msa0245690:intron 35.0%
AAAGAACCATTTCCAAAGTC+CGG - chr2_2:25558647-25558666 None:intergenic 35.0%
GGTTCCACATAAATTTAGCA+AGG + chr2_2:25558679-25558698 Msa0245690:intron 35.0%
! GATGCATCCATTTTCCATAT+AGG + chr2_2:25558722-25558741 Msa0245690:intron 35.0%
! GCTGAAAGCATGTATTATAC+TGG + chr2_2:25558884-25558903 Msa0245690:intron 35.0%
! ATCTAGGGTAAAAGACTCAA+GGG - chr2_2:25558940-25558959 None:intergenic 35.0%
! AATCTAGGGTAAAAGACTCA+AGG - chr2_2:25558941-25558960 None:intergenic 35.0%
CAAAGGACAATTGGAAATCT+AGG - chr2_2:25558956-25558975 None:intergenic 35.0%
TCTATACATTTGTGTAGGAG+TGG + chr2_2:25559078-25559097 Msa0245690:intron 35.0%
! TTTTGAATGACGGTAATGCA+AGG + chr2_2:25559331-25559350 Msa0245690:CDS 35.0%
TTTGAATGACGGTAATGCAA+GGG + chr2_2:25559332-25559351 Msa0245690:CDS 35.0%
GCAAGGGACATTATTACTTA+TGG + chr2_2:25559348-25559367 Msa0245690:CDS 35.0%
!! TTTCGTAATTTTGGAGGAAC+TGG - chr2_2:25559450-25559469 None:intergenic 35.0%
TCAGACTTCTCATTGATGTA+AGG + chr2_2:25559578-25559597 Msa0245690:intron 35.0%
TTTCAGCTTGGAATACACTT+TGG + chr2_2:25559637-25559656 Msa0245690:intron 35.0%
ATTAGCACTAATTGTTCAGC+TGG + chr2_2:25559701-25559720 Msa0245690:CDS 35.0%
CACTAAACTAAAATCCCCTT+TGG + chr2_2:25559982-25560001 Msa0245690:intron 35.0%
AAGAACAGCTTGAATGGAAA+TGG - chr2_2:25560121-25560140 None:intergenic 35.0%
AACTCAAAGAACAGCTTGAA+TGG - chr2_2:25560127-25560146 None:intergenic 35.0%
ATTAAATCTCTCCTATCCCT+CGG - chr2_2:25560163-25560182 None:intergenic 35.0%
AAAACCATAACAATACCTCG+TGG + chr2_2:25560208-25560227 Msa0245690:intron 35.0%
GCAATTTCAATCACCAAAGT+GGG - chr2_2:25560339-25560358 None:intergenic 35.0%
AGCAATTTCAATCACCAAAG+TGG - chr2_2:25560340-25560359 None:intergenic 35.0%
AAACAATAGAAGATCTCTCG+AGG - chr2_2:25560432-25560451 None:intergenic 35.0%
TTTATCATAGTTGACCCTGT+AGG - chr2_2:25560524-25560543 None:intergenic 35.0%
AACGTACTATATCGTCAAGT+AGG - chr2_2:25560549-25560568 None:intergenic 35.0%
AAACTGTATGCGAAAGCAAG+TGG + chr2_2:25554576-25554595 Msa0245690:five_prime_UTR 40.0%
! GAGTTGTGTTGTTGCTAAAG+AGG + chr2_2:25554611-25554630 Msa0245690:five_prime_UTR 40.0%
GGATTTGCAATCTAAGCTTG+CGG + chr2_2:25554713-25554732 Msa0245690:five_prime_UTR 40.0%
GTTTAATGGCCATGAACTTG+AGG - chr2_2:25555051-25555070 None:intergenic 40.0%
!! ATTGTAGCTCCTTTTAGGGA+TGG + chr2_2:25555577-25555596 Msa0245690:intron 40.0%
TTGCGGATGGTATATTACGA+GGG - chr2_2:25555907-25555926 None:intergenic 40.0%
ACACCATCCCAATTAGCAAT+TGG + chr2_2:25555951-25555970 Msa0245690:intron 40.0%
AATTGGTCCTTGAAGGACAT+AGG + chr2_2:25555968-25555987 Msa0245690:intron 40.0%
GATGGAATGGTGTGTTACAA+AGG + chr2_2:25556115-25556134 Msa0245690:intron 40.0%
TATTACATGATACTTGGGGG+CGG + chr2_2:25556261-25556280 Msa0245690:intron 40.0%
! AAGGTATAGATGATTTGGGG+CGG - chr2_2:25556290-25556309 None:intergenic 40.0%
TCTATACCTTGTTCTGTCCA+TGG + chr2_2:25556300-25556319 Msa0245690:intron 40.0%
! ATGCCATAACATGGGTTACA+CGG - chr2_2:25556359-25556378 None:intergenic 40.0%
AGACGTGTATGCCATAACAT+GGG - chr2_2:25556367-25556386 None:intergenic 40.0%
AAGACGTGTATGCCATAACA+TGG - chr2_2:25556368-25556387 None:intergenic 40.0%
TTAACTTTCACGTACAGCAC+TGG + chr2_2:25556528-25556547 Msa0245690:intron 40.0%
ACTCCATCTCCAATAGAGAT+AGG - chr2_2:25556671-25556690 None:intergenic 40.0%
! GATCTAGTCGTTATTGGTTG+TGG + chr2_2:25556695-25556714 Msa0245690:five_prime_UTR 40.0%
TTGTTTGTGAAAGGGAGATC+CGG - chr2_2:25556785-25556804 None:intergenic 40.0%
CTCCCTTTCACAAACAACTA+TGG + chr2_2:25556788-25556807 Msa0245690:five_prime_UTR 40.0%
TCACAAACAACTATGGTGTG+TGG + chr2_2:25556795-25556814 Msa0245690:five_prime_UTR 40.0%
CACAAACAACTATGGTGTGT+GGG + chr2_2:25556796-25556815 Msa0245690:five_prime_UTR 40.0%
! ATTTCAGGTCTTGGACTTGA+AGG + chr2_2:25557208-25557227 Msa0245690:intron 40.0%
AACTTCCCTAAACCTTGCTA+TGG + chr2_2:25557625-25557644 Msa0245690:intron 40.0%
AGGGAAACTATTGCAGTATG+AGG + chr2_2:25557741-25557760 Msa0245690:five_prime_UTR 40.0%
ACTATTGCAGTATGAGGTTG+GGG + chr2_2:25557747-25557766 Msa0245690:five_prime_UTR 40.0%
GTGTGTGTACAAACAGCTTA+TGG + chr2_2:25557778-25557797 Msa0245690:five_prime_UTR 40.0%
AGCTTATGGTGTAGAAGTTG+AGG + chr2_2:25557792-25557811 Msa0245690:five_prime_UTR 40.0%
ATGGTGTAGAAGTTGAGGTA+AGG + chr2_2:25557797-25557816 Msa0245690:intron 40.0%
! CCAATCATATTTTGCAGGAC+AGG - chr2_2:25557885-25557904 None:intergenic 40.0%
CCTGTCCTGCAAAATATGAT+TGG + chr2_2:25557882-25557901 Msa0245690:intron 40.0%
GCATGGATAGACCAATACTT+AGG - chr2_2:25558053-25558072 None:intergenic 40.0%
TAAAGACAAGGAAGGAAGCA+TGG - chr2_2:25558070-25558089 None:intergenic 40.0%
TCCTTATGATCCAAACGTGA+TGG + chr2_2:25558207-25558226 Msa0245690:exon 40.0%
ACCATCACGTTTGGATCATA+AGG - chr2_2:25558211-25558230 None:intergenic 40.0%
! TCCAAACGTGATGGTTTTCA+TGG + chr2_2:25558216-25558235 Msa0245690:exon 40.0%
TCCATGAAAACCATCACGTT+TGG - chr2_2:25558220-25558239 None:intergenic 40.0%
! GAACACTTTTGTAGGAGACA+TGG - chr2_2:25558314-25558333 None:intergenic 40.0%
TTATGAAGAGGTAAGGGCTT+AGG + chr2_2:25558521-25558540 Msa0245690:intron 40.0%
GCTGAAAATTGAATGGTTCC+CGG + chr2_2:25558625-25558644 Msa0245690:intron 40.0%
AAGAACCATTTCCAAAGTCC+GGG - chr2_2:25558646-25558665 None:intergenic 40.0%
GAGCCCTTGCTAAATTTATG+TGG - chr2_2:25558686-25558705 None:intergenic 40.0%
GGGCTCATCTTGTCAAAAAA+AGG + chr2_2:25558700-25558719 Msa0245690:intron 40.0%
AATAGTAGGATAGGACAGAG+TGG - chr2_2:25558781-25558800 None:intergenic 40.0%
CTGATATTTGCCGCGATTAT+TGG + chr2_2:25558831-25558850 Msa0245690:intron 40.0%
GTAACAGCTCAAAGGACAAT+TGG - chr2_2:25558965-25558984 None:intergenic 40.0%
GCAATTACTGAAGCGTATTG+CGG - chr2_2:25559306-25559325 None:intergenic 40.0%
ACTTGATTACCTCGCATTGA+TGG - chr2_2:25559390-25559409 None:intergenic 40.0%
!! GGTCTAAGGTTCTAAGCTTA+CGG - chr2_2:25559417-25559436 None:intergenic 40.0%
! CTGGTAACATTTAGGGTCTA+AGG - chr2_2:25559431-25559450 None:intergenic 40.0%
GGAGGAACTGGTAACATTTA+GGG - chr2_2:25559438-25559457 None:intergenic 40.0%
TGGAGGAACTGGTAACATTT+AGG - chr2_2:25559439-25559458 None:intergenic 40.0%
CCAGATAGTAGAACTGTTTG+AGG - chr2_2:25559494-25559513 None:intergenic 40.0%
CCTCAAACAGTTCTACTATC+TGG + chr2_2:25559491-25559510 Msa0245690:intron 40.0%
ATACACTTTGGCCACAAGAA+AGG + chr2_2:25559649-25559668 Msa0245690:CDS 40.0%
ATTGTTCAGCTGGACATTGA+AGG + chr2_2:25559711-25559730 Msa0245690:CDS 40.0%
CAGGTAAGCAGAAGAAAGTA+CGG - chr2_2:25559752-25559771 None:intergenic 40.0%
GAAAATAGACCATACCACTC+AGG - chr2_2:25559771-25559790 None:intergenic 40.0%
ATCTTCTATCTTGGCTTCAG+TGG + chr2_2:25559875-25559894 Msa0245690:intron 40.0%
AAAATCCCCTTTGGTATGCA+TGG + chr2_2:25559991-25560010 Msa0245690:intron 40.0%
ATCCTACCATGCATACCAAA+GGG - chr2_2:25560000-25560019 None:intergenic 40.0%
TATCCTACCATGCATACCAA+AGG - chr2_2:25560001-25560020 None:intergenic 40.0%
TATGCATGGTAGGATAGCAT+AGG + chr2_2:25560005-25560024 Msa0245690:intron 40.0%
!! AGTTTTAATGAAAGCTCCCG+AGG + chr2_2:25560143-25560162 Msa0245690:intron 40.0%
!! GTTTTAATGAAAGCTCCCGA+GGG + chr2_2:25560144-25560163 Msa0245690:intron 40.0%
TTAAATCTCTCCTATCCCTC+GGG - chr2_2:25560162-25560181 None:intergenic 40.0%
!! TATGCCACGAGGTATTGTTA+TGG - chr2_2:25560215-25560234 None:intergenic 40.0%
AACAATACCTCGTGGCATAA+AGG + chr2_2:25560216-25560235 Msa0245690:intron 40.0%
! CTGATTTTTATCGCAGGATG+TGG + chr2_2:25560381-25560400 Msa0245690:intron 40.0%
ATCTGCTTTCAGATCCTACA+GGG + chr2_2:25560507-25560526 Msa0245690:CDS 40.0%
! AATACAGGGTACCTAACAAG+AGG - chr2_2:25560586-25560605 None:intergenic 40.0%
TCTTGTTAGGTACCCTGTAT+TGG + chr2_2:25560585-25560604 Msa0245690:three_prime_UTR 40.0%
CTTGTTAGGTACCCTGTATT+GGG + chr2_2:25560586-25560605 Msa0245690:three_prime_UTR 40.0%
GAGACAGGCTAGATTACATT+AGG + chr2_2:25560608-25560627 Msa0245690:three_prime_UTR 40.0%
!!! AGGTTGGCGCTTTTTTGAGA+GGG - chr2_2:25554333-25554352 None:intergenic 45.0%
!!! AAGGTTGGCGCTTTTTTGAG+AGG - chr2_2:25554334-25554353 None:intergenic 45.0%
TGTTGAAACGACGACGTAGA+AGG - chr2_2:25554353-25554372 None:intergenic 45.0%
TTCGTTACAATGGAGTGCGT+TGG + chr2_2:25554435-25554454 Msa0245690:five_prime_UTR 45.0%
CGTTGGAGCGAGAAACTTAA+CGG + chr2_2:25554452-25554471 Msa0245690:five_prime_UTR 45.0%
AGCGAGAAACTTAACGGCAA+TGG + chr2_2:25554458-25554477 Msa0245690:five_prime_UTR 45.0%
AAGCTTCATCGAACGCGATT+CGG + chr2_2:25554541-25554560 Msa0245690:five_prime_UTR 45.0%
AGAGGATTATGCTGATGAGG+AGG + chr2_2:25554629-25554648 Msa0245690:five_prime_UTR 45.0%
! GAGGAGGATTTTGTTAAGGC+TGG + chr2_2:25554645-25554664 Msa0245690:five_prime_UTR 45.0%
! GAGGATTTTGTTAAGGCTGG+TGG + chr2_2:25554648-25554667 Msa0245690:five_prime_UTR 45.0%
GCAATCTAAGCTTGCGGATA+AGG + chr2_2:25554719-25554738 Msa0245690:five_prime_UTR 45.0%
CGCCACAATCTCATGATATG+CGG + chr2_2:25555689-25555708 Msa0245690:intron 45.0%
CTTGCGGATGGTATATTACG+AGG - chr2_2:25555908-25555927 None:intergenic 45.0%
!! CGTAAAAAGGTGCTCTCTTG+CGG - chr2_2:25555924-25555943 None:intergenic 45.0%
GGACCAATTGCTAATTGGGA+TGG - chr2_2:25555957-25555976 None:intergenic 45.0%
CACAACTCCTATGTCCTTCA+AGG - chr2_2:25555978-25555997 None:intergenic 45.0%
AAAGAGCCATGGACAGAACA+AGG - chr2_2:25556309-25556328 None:intergenic 45.0%
!!! CAGCACTGGTTTTCACGTTT+CGG + chr2_2:25556542-25556561 Msa0245690:intron 45.0%
GCAACTGCAAGAGCGATTAA+CGG - chr2_2:25556646-25556665 None:intergenic 45.0%
CAGTTGCCACCTATCTCTAT+TGG + chr2_2:25556659-25556678 Msa0245690:intron 45.0%
CCATCTCCAATAGAGATAGG+TGG - chr2_2:25556668-25556687 None:intergenic 45.0%
CCACCTATCTCTATTGGAGA+TGG + chr2_2:25556665-25556684 Msa0245690:five_prime_UTR 45.0%
AAACAACTATGGTGTGTGGG+AGG + chr2_2:25556799-25556818 Msa0245690:five_prime_UTR 45.0%
GTGTGGGAGGACGAATTTAA+AGG + chr2_2:25556812-25556831 Msa0245690:five_prime_UTR 45.0%
GAGTCAGGTGTCTCGTATAT+TGG + chr2_2:25557469-25557488 Msa0245690:intron 45.0%
AGGATTGTTGAGGCTAGCAA+TGG + chr2_2:25557505-25557524 Msa0245690:five_prime_UTR 45.0%
TAGCGCCATAGCAAGGTTTA+GGG - chr2_2:25557633-25557652 None:intergenic 45.0%
TCAAAACTAGCGCCATAGCA+AGG - chr2_2:25557640-25557659 None:intergenic 45.0%
CTATTGCAGTATGAGGTTGG+GGG + chr2_2:25557748-25557767 Msa0245690:five_prime_UTR 45.0%
GCTGTTTGTACACACACCTT+TGG - chr2_2:25557775-25557794 None:intergenic 45.0%
! AACAGTGTGCTGACAAGCTT+AGG + chr2_2:25557926-25557945 Msa0245690:intron 45.0%
!! GTTTTCAAAAAGTGTGGGCG+TGG + chr2_2:25557988-25558007 Msa0245690:intron 45.0%
CGGGTAAATTGTACCAAGTC+CGG + chr2_2:25558021-25558040 Msa0245690:intron 45.0%
GGGTAAATTGTACCAAGTCC+GGG + chr2_2:25558022-25558041 Msa0245690:intron 45.0%
ACCAATACTTAGGGACTTCC+CGG - chr2_2:25558043-25558062 None:intergenic 45.0%
CCAAACATGTTTCCTGCGAT+TGG - chr2_2:25558416-25558435 None:intergenic 45.0%
CCAATCGCAGGAAACATGTT+TGG + chr2_2:25558413-25558432 Msa0245690:intron 45.0%
ATTGAATGGTTCCCGGACTT+TGG + chr2_2:25558632-25558651 Msa0245690:intron 45.0%
TTGGTAAGGATCCACCAACT+GGG - chr2_2:25559112-25559131 None:intergenic 45.0%
TTTGGTAAGGATCCACCAAC+TGG - chr2_2:25559113-25559132 None:intergenic 45.0%
CTTCTGCTCTGTGTTTGGTA+AGG - chr2_2:25559126-25559145 None:intergenic 45.0%
AGGTTCTTCTGCTCTGTGTT+TGG - chr2_2:25559131-25559150 None:intergenic 45.0%
GAGCAGAAGAACCTTGCATT+TGG + chr2_2:25559137-25559156 Msa0245690:CDS 45.0%
CTCACAACAGAGTAGCCTAT+TGG - chr2_2:25559267-25559286 None:intergenic 45.0%
CTCTGTTGTGAGATCGTTGT+CGG + chr2_2:25559275-25559294 Msa0245690:CDS 45.0%
AAGGAGAATCCATCAATGCG+AGG + chr2_2:25559378-25559397 Msa0245690:CDS 45.0%
! CTCTGTCGTTTCCTTTCTTG+TGG - chr2_2:25559663-25559682 None:intergenic 45.0%
CTTTCTTCTGCTTACCTGAG+TGG + chr2_2:25559754-25559773 Msa0245690:CDS 45.0%
TTCTGCTTACCTGAGTGGTA+TGG + chr2_2:25559759-25559778 Msa0245690:intron 45.0%
TCCTACCATGCATACCAAAG+GGG - chr2_2:25559999-25560018 None:intergenic 45.0%
GGATAGCATAGGACACGATA+AGG + chr2_2:25560016-25560035 Msa0245690:intron 45.0%
CTACTAACCTTTATGCCACG+AGG - chr2_2:25560226-25560245 None:intergenic 45.0%
! TTTTATCGCAGGATGTGGCA+AGG + chr2_2:25560386-25560405 Msa0245690:intron 45.0%
AGGATGTGGCAAGGATTTCT+TGG + chr2_2:25560395-25560414 Msa0245690:intron 45.0%
CATCTGCTTTCAGATCCTAC+AGG + chr2_2:25560506-25560525 Msa0245690:CDS 45.0%
GAAACGACGACGTAGAAGGT+TGG - chr2_2:25554349-25554368 None:intergenic 50.0%
TATGCGAAAGCAAGTGGTGC+AGG + chr2_2:25554582-25554601 Msa0245690:five_prime_UTR 50.0%
! TCGAGTTGCGCATTGATCGT+CGG + chr2_2:25554785-25554804 Msa0245690:intron 50.0%
!! CGCATTGATCGTCGGTTTGA+AGG + chr2_2:25554793-25554812 Msa0245690:intron 50.0%
! TACTCTACAGTTTTCGCCCC+TGG - chr2_2:25555628-25555647 None:intergenic 50.0%
CGCCGCATATCATGAGATTG+TGG - chr2_2:25555694-25555713 None:intergenic 50.0%
!! AAAAGGTGCTCTCTTGCGGA+TGG - chr2_2:25555920-25555939 None:intergenic 50.0%
GTGCCGTGTAACCCATGTTA+TGG + chr2_2:25556353-25556372 Msa0245690:intron 50.0%
! GTTATTGGTTGTGGTCCTGC+TGG + chr2_2:25556704-25556723 Msa0245690:five_prime_UTR 50.0%
CTTGCTCTAGCTGCTGAATC+TGG + chr2_2:25556728-25556747 Msa0245690:five_prime_UTR 50.0%
GCTGCTGAATCTGGCAAGTT+AGG + chr2_2:25556737-25556756 Msa0245690:five_prime_UTR 50.0%
ACGGCCATAAGAACGTCCAA+TGG - chr2_2:25557293-25557312 None:intergenic 50.0%
GTTCTTATGGCCGTGTCAGT+CGG + chr2_2:25557299-25557318 Msa0245690:five_prime_UTR 50.0%
! GAAGCAAATGCCGACTGACA+CGG - chr2_2:25557312-25557331 None:intergenic 50.0%
ATGATACTGTAGTGCCCTGC+AGG + chr2_2:25557551-25557570 Msa0245690:five_prime_UTR 50.0%
GCATGCAAATCGTACCTGCA+GGG - chr2_2:25557568-25557587 None:intergenic 50.0%
AGCATGCAAATCGTACCTGC+AGG - chr2_2:25557569-25557588 None:intergenic 50.0%
CTAGCGCCATAGCAAGGTTT+AGG - chr2_2:25557634-25557653 None:intergenic 50.0%
!! AGGCTTGCTACTGTTGCATC+AGG + chr2_2:25557709-25557728 Msa0245690:intron 50.0%
TTGCATCAGGAGCAGCTTCA+GGG + chr2_2:25557722-25557741 Msa0245690:five_prime_UTR 50.0%
TAGAAGTTGAGGTAAGGCGC+TGG + chr2_2:25557803-25557822 Msa0245690:intron 50.0%
TCCGGGAAGTCCCTAAGTAT+TGG + chr2_2:25558039-25558058 Msa0245690:intron 50.0%
CTCAACACACTCCCTCCTAT+TGG + chr2_2:25558603-25558622 Msa0245690:intron 50.0%
! TGGTTCCCGGACTTTGGAAA+TGG + chr2_2:25558638-25558657 Msa0245690:intron 50.0%
! GAGTGGTCTTACATCCCAGT+TGG + chr2_2:25559095-25559114 Msa0245690:CDS 50.0%
! TGGTCTTACATCCCAGTTGG+TGG + chr2_2:25559098-25559117 Msa0245690:CDS 50.0%
ATGTGACGATGTCATGCCTG+TGG - chr2_2:25559189-25559208 None:intergenic 50.0%
TCCCCTTTGGTATGCATGGT+AGG + chr2_2:25559995-25560014 Msa0245690:intron 50.0%
AATGAAAGCTCCCGAGGGAT+AGG + chr2_2:25560149-25560168 Msa0245690:intron 50.0%
CTAGCCTGTCTCCCAATACA+GGG - chr2_2:25560600-25560619 None:intergenic 50.0%
TCTAGCCTGTCTCCCAATAC+AGG - chr2_2:25560601-25560620 None:intergenic 50.0%
CACACGTTCAACACAGCACA+AGG - chr2_2:25560713-25560732 None:intergenic 50.0%
CATTGTATGCGTGCGTGCAC+CGG - chr2_2:25554861-25554880 None:intergenic 55.0%
ACGAGGGAGCGAAAGAGTTC+AGG - chr2_2:25555891-25555910 None:intergenic 55.0%
CAGTCGGCATTTGCTTCACG+AGG + chr2_2:25557315-25557334 Msa0245690:five_prime_UTR 55.0%
TTCCCTAGGTGTGTCGAGTC+AGG + chr2_2:25557454-25557473 Msa0245690:intron 55.0%
! CACCTGACTCGACACACCTA+GGG - chr2_2:25557459-25557478 None:intergenic 55.0%
! ACACCTGACTCGACACACCT+AGG - chr2_2:25557460-25557479 None:intergenic 55.0%
GTTGCATCAGGAGCAGCTTC+AGG + chr2_2:25557721-25557740 Msa0245690:five_prime_UTR 55.0%
GTATGAGGTTGGGGGTCCAA+AGG + chr2_2:25557756-25557775 Msa0245690:five_prime_UTR 55.0%
!! GTGGGCGTGGCCTTATAAGT+CGG + chr2_2:25558001-25558020 Msa0245690:intron 55.0%
!! TGGGCGTGGCCTTATAAGTC+GGG + chr2_2:25558002-25558021 Msa0245690:intron 55.0%
ACTTAGGGACTTCCCGGACT+TGG - chr2_2:25558037-25558056 None:intergenic 55.0%
GGTACCCTGTATTGGGAGAC+AGG + chr2_2:25560593-25560612 Msa0245690:three_prime_UTR 55.0%
GCAGCTAGAGCAAGACCAGC+AGG - chr2_2:25556722-25556741 None:intergenic 60.0%
!! GAGGTAAGGCGCTGGCTCTT+TGG + chr2_2:25557811-25557830 Msa0245690:intron 60.0%
TGGCAGCTGCGCCAAATGCA+AGG - chr2_2:25559151-25559170 None:intergenic 60.0%
ATTTGGCGCAGCTGCCAGCA+TGG + chr2_2:25559154-25559173 Msa0245690:CDS 60.0%
TGTGGCTGGATGCACCATGC+TGG - chr2_2:25559171-25559190 None:intergenic 60.0%
AGCATGGTGCATCCAGCCAC+AGG + chr2_2:25559170-25559189 Msa0245690:CDS 60.0%
GACGATGTCATGCCTGTGGC+TGG - chr2_2:25559185-25559204 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 25554311 25560742 25554311 ID=Msa0245690;Name=Msa0245690
chr2_2 mRNA 25554311 25560742 25554311 ID=Msa0245690-mRNA-1;Parent=Msa0245690;Name=Msa0245690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=968|1|1|1|0.8|0.81|11|180|248
chr2_2 exon 25554311 25554740 25554311 ID=Msa0245690-mRNA-1:exon:9611;Parent=Msa0245690-mRNA-1
chr2_2 exon 25556662 25556833 25556662 ID=Msa0245690-mRNA-1:exon:9612;Parent=Msa0245690-mRNA-1
chr2_2 exon 25557215 25557350 25557215 ID=Msa0245690-mRNA-1:exon:9613;Parent=Msa0245690-mRNA-1
chr2_2 exon 25557476 25557572 25557476 ID=Msa0245690-mRNA-1:exon:9614;Parent=Msa0245690-mRNA-1
chr2_2 exon 25557711 25557813 25557711 ID=Msa0245690-mRNA-1:exon:9615;Parent=Msa0245690-mRNA-1
chr2_2 exon 25558196 25558339 25558196 ID=Msa0245690-mRNA-1:exon:9616;Parent=Msa0245690-mRNA-1
chr2_2 exon 25558423 25558530 25558423 ID=Msa0245690-mRNA-1:exon:9617;Parent=Msa0245690-mRNA-1
chr2_2 exon 25559095 25559191 25559095 ID=Msa0245690-mRNA-1:exon:9618;Parent=Msa0245690-mRNA-1
chr2_2 exon 25559271 25559399 25559271 ID=Msa0245690-mRNA-1:exon:9619;Parent=Msa0245690-mRNA-1
chr2_2 exon 25559643 25559775 25559643 ID=Msa0245690-mRNA-1:exon:9620;Parent=Msa0245690-mRNA-1
chr2_2 exon 25560397 25560742 25560397 ID=Msa0245690-mRNA-1:exon:9621;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25554311 25554740 25554311 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25556662 25556833 25556662 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25557215 25557350 25557215 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25557476 25557572 25557476 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25557711 25557813 25557711 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 five_prime_UTR 25558196 25558225 25558196 ID=Msa0245690-mRNA-1:five_prime_utr;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25558226 25558339 25558226 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25558423 25558530 25558423 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25559095 25559191 25559095 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25559271 25559399 25559271 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25559643 25559775 25559643 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 CDS 25560397 25560562 25560397 ID=Msa0245690-mRNA-1:cds;Parent=Msa0245690-mRNA-1
chr2_2 three_prime_UTR 25560563 25560742 25560563 ID=Msa0245690-mRNA-1:three_prime_utr;Parent=Msa0245690-mRNA-1
Gene Sequence

>Msa0245690

ATGGTTTTCATGGATTACAGAGACTATATGAAGAACAATGTTCAAACTCTAGAAGCTAAATATCCAACATTTCTTTATGCAATGCCCATGTCTCCTACAAAAGTGTTCTTTGAGGAAACATGTTTGGCGTCTAAAGATGCCATGCCTTTTGATTTATTAAAGAAAAAGCTCTTATCAAGATTAAATACGATGGGGATCAAAGTTACGAAAACTTATGAAGAGGAGTGGTCTTACATCCCAGTTGGTGGATCCTTACCAAACACAGAGCAGAAGAACCTTGCATTTGGCGCAGCTGCCAGCATGGTGCATCCAGCCACAGGCTACTCTGTTGTGAGATCGTTGTCGGAAGCTCCGCAATACGCTTCAGTAATTGCTACAATTTTGAATGACGGTAATGCAAGGGACATTATTACTTATGGAAGAAGTAAGGAGAATCCATCAATGCGAGCTTGGAATACACTTTGGCCACAAGAAAGGAAACGACAGAGATCTTTCTTTCTTTTTGGATTAGCACTAATTGTTCAGCTGGACATTGAAGGCACTAGAACATTCTTCCGTACTTTCTTCTGCTTACCTGAGTGGATGTGGCAAGGATTTCTTGGTTCTTCTCTGTCCTCGAGAGATCTTCTATTGTTTGCACTTTACATGTTCATAATAGCACCAAATAACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGTCAACTATGATAAAAACCTACTTGACGATATAG

Protein sequence

>Msa0245690

MVFMDYRDYMKNNVQTLEAKYPTFLYAMPMSPTKVFFEETCLASKDAMPFDLLKKKLLSRLNTMGIKVTKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPQYASVIATILNDGNARDIITYGRSKENPSMRAWNTLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSRDLLLFALYMFIIAPNNLRMSLVRHLLSDPTGSTMIKTYLTI*