AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050560 MtrunA17_Chr1g0184761 96.350 137 5 0 1 137 1 137 9.27e-93 264
Msa0050560 MtrunA17_Chr7g0260701 75.912 137 32 1 1 137 1 136 6.39e-66 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050560 AT2G30570.1 62.319 138 46 4 1 137 1 133 1.86e-46 147

Find 51 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGTGTTCGGTCTTATC+TGG 0.197833 1_2:+4487233 Msa0050560:CDS
GTTTCATCCTCTCCTGTTCT+TGG 0.207350 1_2:+4486344 Msa0050560:CDS
ATTCATTTCAAGCAATTTAA+AGG 0.218602 1_2:-4487312 None:intergenic
TCCACCAATGCCATGGCTGC+TGG 0.247914 1_2:-4487139 None:intergenic
GGACTCAGCAACAACCTTCT+TGG 0.302937 1_2:+4487199 Msa0050560:CDS
CTTCCTACCTTAGCCATTGT+TGG 0.362196 1_2:-4487007 None:intergenic
TTCATTTCAAGCAATTTAAA+GGG 0.388432 1_2:-4487311 None:intergenic
TAAGACCGAACACACCAAAA+AGG 0.399989 1_2:-4487228 None:intergenic
TTAGTAAGTGTGGATGATTA+TGG 0.401065 1_2:-4486233 None:intergenic
CCACCAATGCCATGGCTGCT+GGG 0.401839 1_2:-4487138 None:intergenic
CCCAGCAGCCATGGCATTGG+TGG 0.403670 1_2:+4487138 Msa0050560:CDS
AAATTGCTTGAAATGAATCA+TGG 0.409618 1_2:+4487317 Msa0050560:exon
ACTTCACTTAAACTAGTATC+TGG 0.410001 1_2:+4486168 Msa0050560:five_prime_UTR
AGGAAGAGTGAGGTGTTCAA+TGG 0.414580 1_2:+4487024 Msa0050560:CDS
TTGCTTTCATTCACAGAAGA+AGG 0.414981 1_2:-4487055 None:intergenic
GAAGGAACCGGGCTTCCCTT+TGG 0.425729 1_2:+4487178 Msa0050560:CDS
CTTGAAGAGGATGAAGAGTC+TGG 0.434178 1_2:+4487283 Msa0050560:CDS
AGAATGAGCACTGAAGGAAC+CGG 0.435090 1_2:+4487166 Msa0050560:CDS
TGGTGTGTTCGGTCTTATCT+GGG 0.435857 1_2:+4487234 Msa0050560:CDS
CATGGCTGCTGGGCTTGACA+TGG 0.440621 1_2:-4487128 None:intergenic
ACAAACAGCATACCAAGAAC+AGG 0.443082 1_2:-4486356 None:intergenic
AAGCAACTCAAACATTAGAA+TGG 0.464632 1_2:+4487072 Msa0050560:CDS
GATACTAGTTTAAGTGAAGT+TGG 0.464655 1_2:-4486165 None:intergenic
TCAGCAACAACCTTCTTGGT+TGG 0.473672 1_2:+4487203 Msa0050560:CDS
AAGAGTGAGGTGTTCAATGG+AGG 0.482197 1_2:+4487027 Msa0050560:CDS
AGCAACTCAAACATTAGAAT+GGG 0.484436 1_2:+4487073 Msa0050560:CDS
TAAGAGCTTAAGAAAAGAAG+AGG 0.505449 1_2:-4487416 None:intergenic
AGAGTGAGGTGTTCAATGGA+GGG 0.518257 1_2:+4487028 Msa0050560:CDS
CATGTCAAGCCCAGCAGCCA+TGG 0.532954 1_2:+4487129 Msa0050560:CDS
AAGCCCAGCAGCCATGGCAT+TGG 0.535185 1_2:+4487135 Msa0050560:CDS
AATTGCTTGAAATGAATCAT+GGG 0.540449 1_2:+4487318 Msa0050560:exon
GATAGATTGAAGCTCATGGT+TGG 0.546901 1_2:-4486093 None:intergenic
GAGACAGAAGAGAAGTAGCT+TGG 0.552653 1_2:+4486190 Msa0050560:five_prime_UTR
AAGGTTGTTGCTGAGTCCAA+AGG 0.556907 1_2:-4487194 None:intergenic
TCTTTCATCCACCAATGCCA+TGG 0.558482 1_2:-4487146 None:intergenic
CAAGGATAGATTGAAGCTCA+TGG 0.568609 1_2:-4486097 None:intergenic
GCTGAGTCCAAAGGGAAGCC+CGG 0.571088 1_2:-4487185 None:intergenic
AGGATTGCCAACAATGGCTA+AGG 0.574193 1_2:+4487000 Msa0050560:intron
AGGTTGTTGCTGAGTCCAAA+GGG 0.582023 1_2:-4487193 None:intergenic
GATGAAAGAATGAGCACTGA+AGG 0.583467 1_2:+4487160 Msa0050560:CDS
AGTCCATGCACCACAAAACA+AGG 0.587249 1_2:-4486115 None:intergenic
GAATGAGCACTGAAGGAACC+GGG 0.588005 1_2:+4487167 Msa0050560:CDS
AGTTGTAGTGGTAGCTGAGA+TGG 0.594313 1_2:-4486276 None:intergenic
CTACGCGTCGAGTCTTGAAG+AGG 0.601810 1_2:+4487270 Msa0050560:CDS
TTATTCAGGATTGCCAACAA+TGG 0.611540 1_2:+4486994 Msa0050560:intron
TTGCCAACAATGGCTAAGGT+AGG 0.622185 1_2:+4487004 Msa0050560:CDS
GGTGATCGATGCAGTTGTAG+TGG 0.624319 1_2:-4486288 None:intergenic
AATTAATAATATCAGTGCAG+AGG 0.638910 1_2:-4486139 None:intergenic
CAGCATACCAAGAACAGGAG+AGG 0.671780 1_2:-4486351 None:intergenic
TGGCTAAGGTAGGAAGAGTG+AGG 0.686087 1_2:+4487014 Msa0050560:CDS
GGAGAGGATGAAACTGCAAG+AGG 0.693611 1_2:-4486335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAACAAAAATTAAAA+TGG + chr1_2:4486250-4486269 Msa0050560:exon 10.0%
!! TACTAAAACAAAAATTAAAA+TGG + chr1_2:4486250-4486269 Msa0050560:exon 10.0%
!!! TATATTTAGGATGAAAATTA+AGG - chr1_2:4486386-4486405 None:intergenic 15.0%
!! AATCATGTTATTGTATATTT+AGG - chr1_2:4486399-4486418 None:intergenic 15.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_2:4486693-4486712 Msa0050560:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_2:4486935-4486954 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_2:4486980-4486999 Msa0050560:intron 15.0%
!!! TATATTTAGGATGAAAATTA+AGG - chr1_2:4486386-4486405 None:intergenic 15.0%
!! AATCATGTTATTGTATATTT+AGG - chr1_2:4486399-4486418 None:intergenic 15.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_2:4486693-4486712 Msa0050560:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_2:4486935-4486954 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_2:4486980-4486999 Msa0050560:intron 15.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_2:4486246-4486265 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_2:4486442-4486461 Msa0050560:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_2:4486694-4486713 Msa0050560:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_2:4487314-4487333 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_2:4487315-4487334 None:intergenic 20.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_2:4486246-4486265 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_2:4486442-4486461 Msa0050560:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_2:4486694-4486713 Msa0050560:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_2:4487314-4487333 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_2:4487315-4487334 None:intergenic 20.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_2:4486142-4486161 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_2:4486458-4486477 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_2:4486475-4486494 Msa0050560:intron 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_2:4486665-4486684 None:intergenic 25.0%
! AACCAAATAGTAGTATAGAA+TGG - chr1_2:4486775-4486794 None:intergenic 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_2:4487317-4487336 Msa0050560:exon 25.0%
! AATTGCTTGAAATGAATCAT+GGG + chr1_2:4487318-4487337 Msa0050560:exon 25.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_2:4486142-4486161 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_2:4486458-4486477 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_2:4486475-4486494 Msa0050560:intron 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_2:4486665-4486684 None:intergenic 25.0%
! AACCAAATAGTAGTATAGAA+TGG - chr1_2:4486775-4486794 None:intergenic 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_2:4487317-4487336 Msa0050560:exon 25.0%
! AATTGCTTGAAATGAATCAT+GGG + chr1_2:4487318-4487337 Msa0050560:exon 25.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_2:4486105-4486124 Msa0050560:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_2:4486168-4486187 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_2:4486168-4486187 Msa0050560:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_2:4486236-4486255 None:intergenic 30.0%
TGCATGTTTGATATTACGAT+AGG + chr1_2:4486534-4486553 Msa0050560:intron 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_2:4486748-4486767 Msa0050560:intron 30.0%
GTCCATTCTATACTACTATT+TGG + chr1_2:4486770-4486789 Msa0050560:intron 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_2:4486793-4486812 Msa0050560:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_2:4487072-4487091 Msa0050560:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_2:4487073-4487092 Msa0050560:CDS 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_2:4487419-4487438 None:intergenic 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_2:4486105-4486124 Msa0050560:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_2:4486168-4486187 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_2:4486168-4486187 Msa0050560:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_2:4486236-4486255 None:intergenic 30.0%
TGCATGTTTGATATTACGAT+AGG + chr1_2:4486534-4486553 Msa0050560:intron 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_2:4486748-4486767 Msa0050560:intron 30.0%
GTCCATTCTATACTACTATT+TGG + chr1_2:4486770-4486789 Msa0050560:intron 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_2:4486793-4486812 Msa0050560:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_2:4487072-4487091 Msa0050560:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_2:4487073-4487092 Msa0050560:CDS 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_2:4487419-4487438 None:intergenic 30.0%
ACATAGCAAAAACCACATGT+TGG - chr1_2:4486576-4486595 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_2:4486746-4486765 None:intergenic 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_2:4486863-4486882 Msa0050560:intron 35.0%
CGTCAGTTTGATATTTGGTT+CGG + chr1_2:4486868-4486887 Msa0050560:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_2:4486994-4487013 Msa0050560:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_2:4487058-4487077 None:intergenic 35.0%
ACATAGCAAAAACCACATGT+TGG - chr1_2:4486576-4486595 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_2:4486746-4486765 None:intergenic 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_2:4486863-4486882 Msa0050560:intron 35.0%
CGTCAGTTTGATATTTGGTT+CGG + chr1_2:4486868-4486887 Msa0050560:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_2:4486994-4487013 Msa0050560:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_2:4487058-4487077 None:intergenic 35.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_2:4486096-4486115 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_2:4486100-4486119 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_2:4486112-4486131 Msa0050560:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_2:4486313-4486332 None:intergenic 40.0%
ACAAACAGCATACCAAGAAC+AGG - chr1_2:4486359-4486378 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_2:4486561-4486580 Msa0050560:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_2:4486656-4486675 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_2:4486715-4486734 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_2:4486766-4486785 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_2:4486825-4486844 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_2:4486826-4486845 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_2:4487160-4487179 Msa0050560:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_2:4487216-4487235 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_2:4487214-4487233 Msa0050560:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_2:4487223-4487242 Msa0050560:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_2:4487231-4487250 None:intergenic 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_2:4486096-4486115 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_2:4486100-4486119 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_2:4486112-4486131 Msa0050560:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_2:4486313-4486332 None:intergenic 40.0%
ACAAACAGCATACCAAGAAC+AGG - chr1_2:4486359-4486378 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_2:4486561-4486580 Msa0050560:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_2:4486656-4486675 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_2:4486715-4486734 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_2:4486766-4486785 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_2:4486825-4486844 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_2:4486826-4486845 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_2:4487160-4487179 Msa0050560:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_2:4487216-4487235 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_2:4487214-4487233 Msa0050560:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_2:4487223-4487242 Msa0050560:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_2:4487231-4487250 None:intergenic 40.0%
AGTCCATGCACCACAAAACA+AGG - chr1_2:4486118-4486137 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_2:4486190-4486209 Msa0050560:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_2:4486279-4486298 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_2:4486312-4486331 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_2:4486344-4486363 Msa0050560:CDS 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_2:4486709-4486728 Msa0050560:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_2:4486714-4486733 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_2:4487000-4487019 Msa0050560:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_2:4487004-4487023 Msa0050560:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_2:4487010-4487029 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_2:4487024-4487043 Msa0050560:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_2:4487027-4487046 Msa0050560:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_2:4487028-4487047 Msa0050560:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_2:4487149-4487168 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_2:4487166-4487185 Msa0050560:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_2:4487196-4487215 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_2:4487197-4487216 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_2:4487203-4487222 Msa0050560:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_2:4487233-4487252 Msa0050560:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_2:4487234-4487253 Msa0050560:CDS 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_2:4487283-4487302 Msa0050560:CDS 45.0%
AGTCCATGCACCACAAAACA+AGG - chr1_2:4486118-4486137 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_2:4486190-4486209 Msa0050560:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_2:4486279-4486298 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_2:4486312-4486331 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_2:4486344-4486363 Msa0050560:CDS 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_2:4486709-4486728 Msa0050560:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_2:4486714-4486733 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_2:4487000-4487019 Msa0050560:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_2:4487004-4487023 Msa0050560:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_2:4487010-4487029 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_2:4487024-4487043 Msa0050560:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_2:4487027-4487046 Msa0050560:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_2:4487028-4487047 Msa0050560:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_2:4487149-4487168 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_2:4487166-4487185 Msa0050560:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_2:4487196-4487215 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_2:4487197-4487216 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_2:4487203-4487222 Msa0050560:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_2:4487233-4487252 Msa0050560:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_2:4487234-4487253 Msa0050560:CDS 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_2:4487283-4487302 Msa0050560:CDS 45.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_2:4486291-4486310 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_2:4486338-4486357 None:intergenic 50.0%
CAGCATACCAAGAACAGGAG+AGG - chr1_2:4486354-4486373 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_2:4486820-4486839 Msa0050560:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_2:4487014-4487033 Msa0050560:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_2:4487167-4487186 Msa0050560:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_2:4487199-4487218 Msa0050560:CDS 50.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_2:4486291-4486310 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_2:4486338-4486357 None:intergenic 50.0%
CAGCATACCAAGAACAGGAG+AGG - chr1_2:4486354-4486373 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_2:4486820-4486839 Msa0050560:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_2:4487014-4487033 Msa0050560:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_2:4487167-4487186 Msa0050560:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_2:4487199-4487218 Msa0050560:CDS 50.0%
CTACGCGTCGAGTCTTGAAG+AGG + chr1_2:4487270-4487289 Msa0050560:CDS 55.0%
CTACGCGTCGAGTCTTGAAG+AGG + chr1_2:4487270-4487289 Msa0050560:CDS 55.0%
CATGGCTGCTGGGCTTGACA+TGG - chr1_2:4487131-4487150 None:intergenic 60.0%
CATGTCAAGCCCAGCAGCCA+TGG + chr1_2:4487129-4487148 Msa0050560:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_2:4487135-4487154 Msa0050560:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_2:4487141-4487160 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_2:4487142-4487161 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_2:4487178-4487197 Msa0050560:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_2:4487188-4487207 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+TGG - chr1_2:4487131-4487150 None:intergenic 60.0%
CATGTCAAGCCCAGCAGCCA+TGG + chr1_2:4487129-4487148 Msa0050560:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_2:4487135-4487154 Msa0050560:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_2:4487141-4487160 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_2:4487142-4487161 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_2:4487178-4487197 Msa0050560:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_2:4487188-4487207 None:intergenic 60.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_2:4487138-4487157 Msa0050560:CDS 65.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_2:4487138-4487157 Msa0050560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4486087 4487522 4486087 ID=Msa0050560;Name=Msa0050560
chr1_2 mRNA 4486087 4487522 4486087 ID=Msa0050560-mRNA-1;Parent=Msa0050560;Name=Msa0050560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|1|1|2|204|137
chr1_2 exon 4486087 4486365 4486087 ID=Msa0050560-mRNA-1:exon:1115;Parent=Msa0050560-mRNA-1
chr1_2 exon 4487002 4487522 4487002 ID=Msa0050560-mRNA-1:exon:1116;Parent=Msa0050560-mRNA-1
chr1_2 five_prime_UTR 4486087 4486268 4486087 ID=Msa0050560-mRNA-1:five_prime_utr;Parent=Msa0050560-mRNA-1
chr1_2 CDS 4486269 4486365 4486269 ID=Msa0050560-mRNA-1:cds;Parent=Msa0050560-mRNA-1
chr1_2 CDS 4487002 4487318 4487002 ID=Msa0050560-mRNA-1:cds;Parent=Msa0050560-mRNA-1
chr1_2 three_prime_UTR 4487319 4487522 4487319 ID=Msa0050560-mRNA-1:three_prime_utr;Parent=Msa0050560-mRNA-1
Gene Sequence

>Msa0050560

ATGGCAACCATCTCAGCTACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTAGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGAATGAAAGCAACTCAAACATTAGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTCGGTCTTATCTGGGCTCTCTATTTTATCTACGCGTCGAGTCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTTTAA

Protein sequence

>Msa0050560

MATISATTTTASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVNESNSNIRMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL*