AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098700 MtrunA17_Chr1g0151581 98.016 252 5 0 1 252 1 252 0.0 504
Msa0098700 MtrunA17_Chr5g0401491 47.205 161 84 1 50 210 66 225 4.78e-43 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098700 AT5G11840.1 61.328 256 75 5 13 248 9 260 9.44e-104 302
Msa0098700 AT5G11840.3 64.674 184 53 2 13 184 9 192 1.01e-80 241
Msa0098700 AT5G11840.4 64.481 183 53 2 13 183 9 191 4.42e-80 239
Msa0098700 AT5G11840.2 60.479 167 54 2 13 167 9 175 1.07e-66 205
Msa0098700 AT5G67370.1 41.969 193 111 1 18 210 49 240 1.16e-42 148

Find 76 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACGACTGGTACTCGTTTA+TGG 0.126473 1_3:+4706945 None:intergenic
GTTGATGGAGGGAATAGTTT+TGG 0.223696 1_3:+4707099 None:intergenic
TGTTGGAGTGAATGGGAAAA+AGG 0.250745 1_3:+4707070 None:intergenic
GATATTGTTGCCATTCTTGC+TGG 0.277198 1_3:+4707135 None:intergenic
GCTGGTGATGTTGTTGAATA+TGG 0.283210 1_3:-4706895 Msa0098700:CDS
CTTTGTTCTGTTGCTGTTGT+TGG 0.293720 1_3:+4707032 None:intergenic
TGGCTTGGTTTGGAACTGTT+GGG 0.311583 1_3:-4706819 Msa0098700:CDS
TGCTGCTTCTAGTGGTGTTT+TGG 0.320044 1_3:-4706764 Msa0098700:CDS
GGTGAAGACTGCTGAGGTTT+TGG 0.325730 1_3:-4705106 Msa0098700:CDS
GGGTTACCTGTGGCTTGGTT+TGG 0.356647 1_3:-4706829 Msa0098700:CDS
AACGACTGGTACTCGTTTAT+GGG 0.360388 1_3:+4706946 None:intergenic
TCTGTTGCTGTTGTTGGTAA+TGG 0.366769 1_3:+4707038 None:intergenic
TCTAGGATGGGATACTTCTT+AGG 0.373021 1_3:+4703834 None:intergenic
GTGGCTTGGTTTGGAACTGT+TGG 0.374589 1_3:-4706820 Msa0098700:CDS
GGTAATGGTGATTGATTTGT+TGG 0.385707 1_3:+4707053 None:intergenic
TTGTTAGGATGTATCTTGGT+TGG 0.396546 1_3:-4706726 Msa0098700:CDS
GATTGATTTGTTGGAGTGAA+TGG 0.424418 1_3:+4707062 None:intergenic
GGTATTAATGTGGAGGGAAA+GGG 0.424446 1_3:-4703799 Msa0098700:three_prime_UTR
TGTTAGGATGTATCTTGGTT+GGG 0.425759 1_3:-4706725 Msa0098700:CDS
GCGGTTGTTAGGATGTATCT+TGG 0.430246 1_3:-4706730 Msa0098700:CDS
GGCTGCTGTTCTAACGGAAC+AGG 0.440485 1_3:+4706967 None:intergenic
AACAAGTAACCCAGCAAGAA+TGG 0.440819 1_3:-4707145 Msa0098700:exon
ATCTTGGTTGGGCTTATGTT+GGG 0.441526 1_3:-4706714 Msa0098700:CDS
ATGTTGTTGAATATGGTTCC+CGG 0.443228 1_3:-4706888 Msa0098700:CDS
TTGGCACGTGATAGACTCTT+GGG 0.445944 1_3:-4705087 Msa0098700:CDS
CACCAGCAGCCCATGAAAAC+GGG 0.453557 1_3:+4706911 None:intergenic
AGTCGGTCTGGCAGCATGCT+TGG 0.454960 1_3:-4704022 Msa0098700:CDS
TTTGGCACGTGATAGACTCT+TGG 0.457104 1_3:-4705088 Msa0098700:CDS
TATTTAACATCGAGAGAAAC+CGG 0.458605 1_3:-4703961 Msa0098700:CDS
CTCTGTTTAAGTTCAAGAAA+CGG 0.462020 1_3:-4707000 Msa0098700:CDS
TCACCAGCAGCCCATGAAAA+CGG 0.464675 1_3:+4706910 None:intergenic
TCCAGGTATTGCTCGAACTC+CGG 0.467416 1_3:+4703942 None:intergenic
TATATTGCAGATGAGGAGAC+AGG 0.467504 1_3:-4705770 Msa0098700:intron
ATGTACTATTCTTCAAGATC+AGG 0.468774 1_3:+4703865 None:intergenic
TATCTTGGTTGGGCTTATGT+TGG 0.471423 1_3:-4706715 Msa0098700:CDS
TGGTATTAATGTGGAGGGAA+AGG 0.473092 1_3:-4703800 Msa0098700:three_prime_UTR
GGCTCACCACAAAATGCATC+TGG 0.473478 1_3:+4703886 None:intergenic
ATTGATTTGTTGGAGTGAAT+GGG 0.475696 1_3:+4707063 None:intergenic
GACAGGGTGGTATGATGGCC+AGG 0.475845 1_3:-4705753 Msa0098700:intron
ATACCATGCATGGAGGATCT+AGG 0.480459 1_3:+4703817 None:intergenic
TTGTGGGGTTACCTGTGGCT+TGG 0.484321 1_3:-4706834 Msa0098700:CDS
GAAAATCACTCTAGTCGGTC+TGG 0.491715 1_3:-4704034 Msa0098700:CDS
GTGAAATGCTACTACATGTA+TGG 0.492083 1_3:+4703723 None:intergenic
TTTCCTTTGCCTTGCTTGTG+GGG 0.493230 1_3:-4706849 Msa0098700:CDS
ACTACATGTATGGTAAGAAA+AGG 0.494872 1_3:+4703733 None:intergenic
ACCGGAGTTCGAGCAATACC+TGG 0.506149 1_3:-4703943 Msa0098700:CDS
GGCTTGGTTTGGAACTGTTG+GGG 0.506638 1_3:-4706818 Msa0098700:CDS
GCACAAACAATTCTCTTAGC+AGG 0.508243 1_3:+4706784 None:intergenic
GCTCTGTTTCACTTTGCCGT+TGG 0.508588 1_3:+4707177 None:intergenic
GAGGAGACAGGGTGGTATGA+TGG 0.516290 1_3:-4705758 Msa0098700:CDS
ATTGTTTGTGCTGCTTCTAG+TGG 0.521546 1_3:-4706772 Msa0098700:CDS
GATTCATCATTGTAAGCTCC+AGG 0.524014 1_3:+4703925 None:intergenic
TTTATGGGCTGCTGTTCTAA+CGG 0.540735 1_3:+4706961 None:intergenic
CTCCACATTAATACCATGCA+TGG 0.543181 1_3:+4703807 None:intergenic
ATATTGTTGCCATTCTTGCT+GGG 0.548979 1_3:+4707136 None:intergenic
GTATTAATGTGGAGGGAAAG+GGG 0.552360 1_3:-4703798 Msa0098700:three_prime_UTR
TAACCCCACAAGCAAGGCAA+AGG 0.556717 1_3:+4706846 None:intergenic
CTTGCTTGTGGGGTTACCTG+TGG 0.557353 1_3:-4706839 Msa0098700:CDS
GCAAAGTGAAACAGAGCAGT+AGG 0.560112 1_3:-4707171 Msa0098700:five_prime_UTR
CACAGGTAACCCCACAAGCA+AGG 0.573824 1_3:+4706840 None:intergenic
TTCAAGGTTAAGCCTGTACT+CGG 0.578638 1_3:-4704063 Msa0098700:intron
CTCCATGCATGGTATTAATG+TGG 0.580181 1_3:-4703809 Msa0098700:three_prime_UTR
CATGCATGGAGGATCTAGGA+TGG 0.585585 1_3:+4703821 None:intergenic
GGAACGACGTCGATAACGAC+TGG 0.595019 1_3:+4706932 None:intergenic
AGATTGAAAATCACTCTAGT+CGG 0.609573 1_3:-4704039 Msa0098700:CDS
CATCCTAGATCCTCCATGCA+TGG 0.611902 1_3:-4703820 Msa0098700:three_prime_UTR
CATGCATGGTATTAATGTGG+AGG 0.616854 1_3:-4703806 Msa0098700:three_prime_UTR
ATGCATGGTATTAATGTGGA+GGG 0.620228 1_3:-4703805 Msa0098700:three_prime_UTR
ATGCATGGAGGATCTAGGAT+GGG 0.624436 1_3:+4703822 None:intergenic
ACAGTTCCAAACCAAGCCAC+AGG 0.624924 1_3:+4706823 None:intergenic
GTGGCCAACAACAAAACCAA+CGG 0.646386 1_3:-4707193 None:intergenic
CACATTAATACCATGCATGG+AGG 0.657724 1_3:+4703810 None:intergenic
ATATTGCAGATGAGGAGACA+GGG 0.660822 1_3:-4705769 Msa0098700:intron
AGATACATTACATTCAACAG+TGG 0.729086 1_3:+4706675 None:intergenic
TTGCAGATGAGGAGACAGGG+TGG 0.732719 1_3:-4705766 Msa0098700:intron
GATATGGGTGAAGACTGCTG+AGG 0.749406 1_3:-4705112 Msa0098700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTACATATAAAATCT+TGG - chr1_3:4705165-4705184 Msa0098700:intron 10.0%
!!! GCAATAATTTTATAGTTAAA+CGG - chr1_3:4704932-4704951 Msa0098700:intron 15.0%
!!! TTGTTTATATGGAAGATTTT+AGG + chr1_3:4704730-4704749 None:intergenic 20.0%
!! TAAAATCTTCCATATAAACA+AGG - chr1_3:4704729-4704748 Msa0098700:intron 20.0%
!! TATCATATACGATTAATGTT+AGG - chr1_3:4704960-4704979 Msa0098700:intron 20.0%
!!! ATATTGTTAGTGTTATTCAA+TGG - chr1_3:4705038-4705057 Msa0098700:intron 20.0%
!! TTCATCTACATAAATTCATT+GGG + chr1_3:4705301-4705320 None:intergenic 20.0%
!! TTTCATCTACATAAATTCAT+TGG + chr1_3:4705302-4705321 None:intergenic 20.0%
!! ATTTATGTAGATGAAACTAA+CGG - chr1_3:4705306-4705325 Msa0098700:intron 20.0%
!!! TAATATTAATGTGTCGATTA+TGG + chr1_3:4705538-4705557 None:intergenic 20.0%
!! ATATCTGTAGAGAAATATTT+AGG + chr1_3:4705754-4705773 None:intergenic 20.0%
!! TAAATATTTCTCTACAGATA+TGG - chr1_3:4705753-4705772 Msa0098700:intron 20.0%
!! AAATATTTCTCTACAGATAT+GGG - chr1_3:4705754-4705773 Msa0098700:CDS 20.0%
!!! TAAATAATTCCTGAATCTTT+TGG + chr1_3:4706038-4706057 None:intergenic 20.0%
!! GATCTTAAAGACTTAATATT+AGG + chr1_3:4706280-4706299 None:intergenic 20.0%
!! CATAAGGTTAAATTTAACAA+AGG + chr1_3:4706459-4706478 None:intergenic 20.0%
!! CTTTGTTAAATTTAACCTTA+TGG - chr1_3:4706457-4706476 Msa0098700:intron 20.0%
!! CAAAAACATAAATTTCCATA+AGG + chr1_3:4706475-4706494 None:intergenic 20.0%
!!! GAATATCAACAGATTTTAAA+AGG + chr1_3:4706725-4706744 None:intergenic 20.0%
! TTATCTATTACTTCCATGTA+TGG - chr1_3:4704250-4704269 Msa0098700:intron 25.0%
!!! GCTATTTTGATAAACTATCA+TGG - chr1_3:4704339-4704358 Msa0098700:intron 25.0%
! TGTATTTACATCTCACTTAA+GGG + chr1_3:4704445-4704464 None:intergenic 25.0%
! TTGTATTTACATCTCACTTA+AGG + chr1_3:4704446-4704465 None:intergenic 25.0%
!! CAAAATCGAAGATCTTATTT+GGG - chr1_3:4704540-4704559 Msa0098700:intron 25.0%
! TTCATATCATTAACGTATCA+TGG + chr1_3:4705016-4705035 None:intergenic 25.0%
! ATAAAGAGAAAACAATTACC+TGG + chr1_3:4705149-4705168 None:intergenic 25.0%
!! TCTAAAGTCACATATATGAT+TGG - chr1_3:4705597-4705616 Msa0098700:intron 25.0%
!!! AACTTGTTTGTGTTTTACTA+AGG - chr1_3:4705673-4705692 Msa0098700:intron 25.0%
!! ACTTGTTTGTGTTTTACTAA+GGG - chr1_3:4705674-4705693 Msa0098700:intron 25.0%
!! TTTAAGACTATGTAAGTAGT+AGG - chr1_3:4705960-4705979 Msa0098700:intron 25.0%
! TTAAGACTATGTAAGTAGTA+GGG - chr1_3:4705961-4705980 Msa0098700:intron 25.0%
! TGACATATCACAAAATATAG+TGG + chr1_3:4706232-4706251 None:intergenic 25.0%
!! TACAAGATAATTTTCATCAC+AGG + chr1_3:4706503-4706522 None:intergenic 25.0%
! TTCAATTCATCCATTAATTG+AGG - chr1_3:4706656-4706675 Msa0098700:intron 25.0%
! ACTATACAATCCTCAATTAA+TGG + chr1_3:4706669-4706688 None:intergenic 25.0%
!! AAACTCTTTTGTAATGTTCA+AGG - chr1_3:4706802-4706821 Msa0098700:CDS 25.0%
!! ATTGATTTGTTGGAGTGAAT+GGG + chr1_3:4703821-4703840 None:intergenic 30.0%
! CTCTGTTTAAGTTCAAGAAA+CGG - chr1_3:4703881-4703900 Msa0098700:CDS 30.0%
AGATACATTACATTCAACAG+TGG + chr1_3:4704209-4704228 None:intergenic 30.0%
GTATTTACATCTCACTTAAG+GGG + chr1_3:4704444-4704463 None:intergenic 30.0%
! CCAAATAAGATCTTCGATTT+TGG + chr1_3:4704542-4704561 None:intergenic 30.0%
CCAAAATCGAAGATCTTATT+TGG - chr1_3:4704539-4704558 Msa0098700:intron 30.0%
TCCAAAATAAGAGTCAATGT+TGG + chr1_3:4704577-4704596 None:intergenic 30.0%
! CAATGGTGTTAAGAAATTTG+TGG - chr1_3:4705055-4705074 Msa0098700:intron 30.0%
GTGTTAAGAAATTTGTGGAA+GGG - chr1_3:4705060-4705079 Msa0098700:intron 30.0%
TTCTGGATTACTTGTTTACT+TGG - chr1_3:4705209-4705228 Msa0098700:intron 30.0%
TTGTGTTGAAATTTCTTCAC+CGG + chr1_3:4705256-4705275 None:intergenic 30.0%
!!! TCTCTTCATTTTGTTTTGGA+TGG - chr1_3:4705451-4705470 Msa0098700:intron 30.0%
!! ATTAATGTGTCGATTATGGA+TGG + chr1_3:4705534-4705553 None:intergenic 30.0%
TTGGTATGGAAATTACTACA+AGG + chr1_3:4706019-4706038 None:intergenic 30.0%
ATTTCCATACCAAAAGATTC+AGG - chr1_3:4706026-4706045 Msa0098700:intron 30.0%
! AATTCCTGAATCTTTTGGTA+TGG + chr1_3:4706033-4706052 None:intergenic 30.0%
ACAAATGTCGTACAAAATAG+AGG - chr1_3:4706170-4706189 Msa0098700:intron 30.0%
CTCACTTGTAGTAAAACATT+AGG - chr1_3:4706345-4706364 Msa0098700:intron 30.0%
AGTGCATAAACATATCAAGA+TGG + chr1_3:4706405-4706424 None:intergenic 30.0%
! ACGATTTTGTCAAATAGGAT+AGG + chr1_3:4706633-4706652 None:intergenic 30.0%
! AAACGACGATTTTGTCAAAT+AGG + chr1_3:4706638-4706657 None:intergenic 30.0%
AGATTGAAAATCACTCTAGT+CGG - chr1_3:4706842-4706861 Msa0098700:CDS 30.0%
TATTTAACATCGAGAGAAAC+CGG - chr1_3:4706920-4706939 Msa0098700:CDS 30.0%
ATGTACTATTCTTCAAGATC+AGG + chr1_3:4707019-4707038 None:intergenic 30.0%
ACTACATGTATGGTAAGAAA+AGG + chr1_3:4707151-4707170 None:intergenic 30.0%
ATATTGTTGCCATTCTTGCT+GGG + chr1_3:4703748-4703767 None:intergenic 35.0%
! TTGATGGAGGGAATAGTTTT+GGG + chr1_3:4703784-4703803 None:intergenic 35.0%
!! AAAGGGTTTTTGTTGATGGA+GGG + chr1_3:4703796-4703815 None:intergenic 35.0%
!! AAAAGGGTTTTTGTTGATGG+AGG + chr1_3:4703797-4703816 None:intergenic 35.0%
! GGAAAAAGGGTTTTTGTTGA+TGG + chr1_3:4703800-4703819 None:intergenic 35.0%
!! GATTGATTTGTTGGAGTGAA+TGG + chr1_3:4703822-4703841 None:intergenic 35.0%
!! GGTAATGGTGATTGATTTGT+TGG + chr1_3:4703831-4703850 None:intergenic 35.0%
ATGTTGTTGAATATGGTTCC+CGG - chr1_3:4703993-4704012 Msa0098700:CDS 35.0%
TTGTTAGGATGTATCTTGGT+TGG - chr1_3:4704155-4704174 Msa0098700:intron 35.0%
TGTTAGGATGTATCTTGGTT+GGG - chr1_3:4704156-4704175 Msa0098700:intron 35.0%
!!! GCCAACATTGACTCTTATTT+TGG - chr1_3:4704573-4704592 Msa0098700:intron 35.0%
ATAAGTGCTAGTGTTACCAA+TGG - chr1_3:4704680-4704699 Msa0098700:intron 35.0%
!! ATCTGTCATGTTTTTGCCAT+AGG + chr1_3:4704764-4704783 None:intergenic 35.0%
TGATTGCATCAATGTGAGAA+TGG - chr1_3:4704908-4704927 Msa0098700:intron 35.0%
GGTGTTAAGAAATTTGTGGA+AGG - chr1_3:4705059-4705078 Msa0098700:intron 35.0%
CTCATCTGCAATATAAAGAG+AGG + chr1_3:4705106-4705125 None:intergenic 35.0%
CTCTCTTTATATTGCAGATG+AGG - chr1_3:4705104-4705123 Msa0098700:CDS 35.0%
GGTTCATCTTTGTATGCTAT+TGG - chr1_3:4705186-4705205 Msa0098700:intron 35.0%
!! TCTTTGTATGCTATTGGTTC+TGG - chr1_3:4705192-4705211 Msa0098700:intron 35.0%
TGGATTACTTGTTTACTTGG+AGG - chr1_3:4705212-4705231 Msa0098700:intron 35.0%
TGTGTTGAAATTTCTTCACC+GGG + chr1_3:4705255-4705274 None:intergenic 35.0%
!!! CTTTATTTTCCACACACTTG+TGG + chr1_3:4705341-4705360 None:intergenic 35.0%
TAAACCAAATGACAGGACAA+GGG + chr1_3:4705408-4705427 None:intergenic 35.0%
!! GAGCTCTCTTCATTTTGTTT+TGG - chr1_3:4705447-4705466 Msa0098700:intron 35.0%
!! TGGTTGTGATTTGTTGATAC+TGG - chr1_3:4705617-4705636 Msa0098700:intron 35.0%
ACAGTAAATGCTATAGCTCT+TGG + chr1_3:4705901-4705920 None:intergenic 35.0%
ATGGAAATTACTACAAGGCA+TGG + chr1_3:4706014-4706033 None:intergenic 35.0%
TTGTACTAAATAGCTCATCG+TGG + chr1_3:4706154-4706173 None:intergenic 35.0%
AATATGACACCTTAGCATAG+CGG - chr1_3:4706194-4706213 Msa0098700:intron 35.0%
ACACTGCAAGTTTCAAATTG+TGG + chr1_3:4706551-4706570 None:intergenic 35.0%
! ATTTTCAATCTACCGAGTAC+AGG + chr1_3:4706833-4706852 None:intergenic 35.0%
! TTTGAACCAGATGCATTTTG+TGG - chr1_3:4706989-4707008 Msa0098700:CDS 35.0%
ATGCATGGTATTAATGTGGA+GGG - chr1_3:4707076-4707095 Msa0098700:CDS 35.0%
GTGAAATGCTACTACATGTA+TGG + chr1_3:4707161-4707180 None:intergenic 35.0%
AACAAGTAACCCAGCAAGAA+TGG - chr1_3:4703736-4703755 Msa0098700:three_prime_UTR 40.0%
GATATTGTTGCCATTCTTGC+TGG + chr1_3:4703749-4703768 None:intergenic 40.0%
!! TGATGGAGGGAATAGTTTTG+GGG + chr1_3:4703783-4703802 None:intergenic 40.0%
!! GTTGATGGAGGGAATAGTTT+TGG + chr1_3:4703785-4703804 None:intergenic 40.0%
GTTGGAGTGAATGGGAAAAA+GGG + chr1_3:4703813-4703832 None:intergenic 40.0%
TGTTGGAGTGAATGGGAAAA+AGG + chr1_3:4703814-4703833 None:intergenic 40.0%
! TCTGTTGCTGTTGTTGGTAA+TGG + chr1_3:4703846-4703865 None:intergenic 40.0%
! CTTTGTTCTGTTGCTGTTGT+TGG + chr1_3:4703852-4703871 None:intergenic 40.0%
! TTTATGGGCTGCTGTTCTAA+CGG + chr1_3:4703923-4703942 None:intergenic 40.0%
AACGACTGGTACTCGTTTAT+GGG + chr1_3:4703938-4703957 None:intergenic 40.0%
TAACGACTGGTACTCGTTTA+TGG + chr1_3:4703939-4703958 None:intergenic 40.0%
! GCTGGTGATGTTGTTGAATA+TGG - chr1_3:4703986-4704005 Msa0098700:CDS 40.0%
AAAAGCCCACAACAAAAAGC+CGG + chr1_3:4704015-4704034 None:intergenic 40.0%
! TTTTCCTTTGCCTTGCTTGT+GGG - chr1_3:4704031-4704050 Msa0098700:CDS 40.0%
GCACAAACAATTCTCTTAGC+AGG + chr1_3:4704100-4704119 None:intergenic 40.0%
!! ATTGTTTGTGCTGCTTCTAG+TGG - chr1_3:4704109-4704128 Msa0098700:intron 40.0%
!!! TGTTTTGGCGGTTACTTTTG+CGG - chr1_3:4704132-4704151 Msa0098700:intron 40.0%
TATCTTGGTTGGGCTTATGT+TGG - chr1_3:4704166-4704185 Msa0098700:intron 40.0%
ATCTTGGTTGGGCTTATGTT+GGG - chr1_3:4704167-4704186 Msa0098700:intron 40.0%
TTGTGCTCTTTCTCCATACA+TGG + chr1_3:4704266-4704285 None:intergenic 40.0%
GTCATTGTTGCAGTCTATAG+CGG - chr1_3:4704787-4704806 Msa0098700:intron 40.0%
! GTGTCGACAAATTTCCATCA+TGG + chr1_3:4704841-4704860 None:intergenic 40.0%
TATATTGCAGATGAGGAGAC+AGG - chr1_3:4705111-4705130 Msa0098700:CDS 40.0%
ATATTGCAGATGAGGAGACA+GGG - chr1_3:4705112-4705131 Msa0098700:CDS 40.0%
! GTTCTAAGTTCTCAAAGTCC+CGG - chr1_3:4705234-4705253 Msa0098700:intron 40.0%
! TATTTTCCACACACTTGTGG+CGG + chr1_3:4705338-4705357 None:intergenic 40.0%
ATTACCCTTGTCCTGTCATT+TGG - chr1_3:4705401-4705420 Msa0098700:intron 40.0%
CTAAACCAAATGACAGGACA+AGG + chr1_3:4705409-4705428 None:intergenic 40.0%
! CTTGTCCTGTCATTTGGTTT+AGG - chr1_3:4705407-4705426 Msa0098700:intron 40.0%
TTGCACCTAAACCAAATGAC+AGG + chr1_3:4705415-4705434 None:intergenic 40.0%
GTTCAAATTCCGCTATGCTA+AGG + chr1_3:4706206-4706225 None:intergenic 40.0%
! CACTTTTACTTGTGTCTGTG+AGG - chr1_3:4706586-4706605 Msa0098700:intron 40.0%
TTCAAGGTTAAGCCTGTACT+CGG - chr1_3:4706818-4706837 Msa0098700:CDS 40.0%
GATTCATCATTGTAAGCTCC+AGG + chr1_3:4706959-4706978 None:intergenic 40.0%
! TCTAGGATGGGATACTTCTT+AGG + chr1_3:4707050-4707069 None:intergenic 40.0%
CACATTAATACCATGCATGG+AGG + chr1_3:4707074-4707093 None:intergenic 40.0%
CTCCATGCATGGTATTAATG+TGG - chr1_3:4707072-4707091 Msa0098700:CDS 40.0%
CTCCACATTAATACCATGCA+TGG + chr1_3:4707077-4707096 None:intergenic 40.0%
CATGCATGGTATTAATGTGG+AGG - chr1_3:4707075-4707094 Msa0098700:CDS 40.0%
TGGTATTAATGTGGAGGGAA+AGG - chr1_3:4707081-4707100 Msa0098700:CDS 40.0%
GGTATTAATGTGGAGGGAAA+GGG - chr1_3:4707082-4707101 Msa0098700:CDS 40.0%
GTATTAATGTGGAGGGAAAG+GGG - chr1_3:4707083-4707102 Msa0098700:CDS 40.0%
GCAAAGTGAAACAGAGCAGT+AGG - chr1_3:4703710-4703729 Msa0098700:three_prime_UTR 45.0%
!!! TAGTTTTGGGGACATGCGTA+TGG + chr1_3:4703771-4703790 None:intergenic 45.0%
AAAGCCCACAACAAAAAGCC+GGG + chr1_3:4704014-4704033 None:intergenic 45.0%
! CTTTTCCTTTGCCTTGCTTG+TGG - chr1_3:4704030-4704049 Msa0098700:CDS 45.0%
TTTCCTTTGCCTTGCTTGTG+GGG - chr1_3:4704032-4704051 Msa0098700:CDS 45.0%
!! TGGCTTGGTTTGGAACTGTT+GGG - chr1_3:4704062-4704081 Msa0098700:intron 45.0%
!! TGCTGCTTCTAGTGGTGTTT+TGG - chr1_3:4704117-4704136 Msa0098700:intron 45.0%
!! TGCTTCTAGTGGTGTTTTGG+CGG - chr1_3:4704120-4704139 Msa0098700:intron 45.0%
!!! CGGTTACTTTTGCGGTTGTT+AGG - chr1_3:4704140-4704159 Msa0098700:intron 45.0%
GCGGTTGTTAGGATGTATCT+TGG - chr1_3:4704151-4704170 Msa0098700:intron 45.0%
AGTGCTAGTGTTACCAATGG+TGG - chr1_3:4704683-4704702 Msa0098700:intron 45.0%
!! GTGTTACCAATGGTGGATGA+TGG - chr1_3:4704690-4704709 Msa0098700:intron 45.0%
!! ATGTTTTTGCCATAGGCCCA+CGG + chr1_3:4704757-4704776 None:intergenic 45.0%
GACAGGACAAGGGTAATATC+TGG + chr1_3:4705398-4705417 None:intergenic 45.0%
TTTGGCACGTGATAGACTCT+TGG - chr1_3:4705793-4705812 Msa0098700:intron 45.0%
TTGGCACGTGATAGACTCTT+GGG - chr1_3:4705794-4705813 Msa0098700:intron 45.0%
CACGGGTCATCATCAAAACA+TGG + chr1_3:4706078-4706097 None:intergenic 45.0%
CTTGTGTCTGTGAGGAATTG+CGG - chr1_3:4706594-4706613 Msa0098700:intron 45.0%
GAAAATCACTCTAGTCGGTC+TGG - chr1_3:4706847-4706866 Msa0098700:CDS 45.0%
! ATGCATGGAGGATCTAGGAT+GGG + chr1_3:4707062-4707081 None:intergenic 45.0%
ATACCATGCATGGAGGATCT+AGG + chr1_3:4707067-4707086 None:intergenic 45.0%
GCTCTGTTTCACTTTGCCGT+TGG + chr1_3:4703707-4703726 None:intergenic 50.0%
! GACGTCGTTCCCGTTTTCAT+GGG - chr1_3:4703961-4703980 Msa0098700:CDS 50.0%
TCACCAGCAGCCCATGAAAA+CGG + chr1_3:4703974-4703993 None:intergenic 50.0%
! TGGTTCCCGGCTTTTTGTTG+TGG - chr1_3:4704006-4704025 Msa0098700:CDS 50.0%
!! GGTTCCCGGCTTTTTGTTGT+GGG - chr1_3:4704007-4704026 Msa0098700:CDS 50.0%
TAACCCCACAAGCAAGGCAA+AGG + chr1_3:4704038-4704057 None:intergenic 50.0%
ACAGTTCCAAACCAAGCCAC+AGG + chr1_3:4704061-4704080 None:intergenic 50.0%
!! GTGGCTTGGTTTGGAACTGT+TGG - chr1_3:4704061-4704080 Msa0098700:intron 50.0%
!! GGCTTGGTTTGGAACTGTTG+GGG - chr1_3:4704063-4704082 Msa0098700:intron 50.0%
! TCTCACTTAAGGGGCACGTT+TGG + chr1_3:4704435-4704454 None:intergenic 50.0%
CAGAGTCCATCATCCACCAT+TGG + chr1_3:4704699-4704718 None:intergenic 50.0%
!! CAATGGTGGATGATGGACTC+TGG - chr1_3:4704697-4704716 Msa0098700:intron 50.0%
!! TCCATATAAACAAGGCGCCG+TGG - chr1_3:4704737-4704756 Msa0098700:intron 50.0%
!! CCATATAAACAAGGCGCCGT+GGG - chr1_3:4704738-4704757 Msa0098700:intron 50.0%
TCCATCATGGCGTCATGACA+TGG + chr1_3:4704828-4704847 None:intergenic 50.0%
GATATGGGTGAAGACTGCTG+AGG - chr1_3:4705769-4705788 Msa0098700:intron 50.0%
! GGTGAAGACTGCTGAGGTTT+TGG - chr1_3:4705775-4705794 Msa0098700:intron 50.0%
TGACCCGTGCTGTCAAATAG+CGG - chr1_3:4706089-4706108 Msa0098700:intron 50.0%
! AGTGCCGCTATTTGACAGCA+CGG + chr1_3:4706096-4706115 None:intergenic 50.0%
! TCCAGGTATTGCTCGAACTC+CGG + chr1_3:4706942-4706961 None:intergenic 50.0%
GGCTCACCACAAAATGCATC+TGG + chr1_3:4706998-4707017 None:intergenic 50.0%
CATGCATGGAGGATCTAGGA+TGG + chr1_3:4707063-4707082 None:intergenic 50.0%
CATCCTAGATCCTCCATGCA+TGG - chr1_3:4707061-4707080 Msa0098700:CDS 50.0%
GGCTGCTGTTCTAACGGAAC+AGG + chr1_3:4703917-4703936 None:intergenic 55.0%
GGAACGACGTCGATAACGAC+TGG + chr1_3:4703952-4703971 None:intergenic 55.0%
! CGACGTCGTTCCCGTTTTCA+TGG - chr1_3:4703960-4703979 Msa0098700:CDS 55.0%
!! TTCCCGTTTTCATGGGCTGC+TGG - chr1_3:4703968-4703987 Msa0098700:CDS 55.0%
CACCAGCAGCCCATGAAAAC+GGG + chr1_3:4703973-4703992 None:intergenic 55.0%
CACAGGTAACCCCACAAGCA+AGG + chr1_3:4704044-4704063 None:intergenic 55.0%
CTTGCTTGTGGGGTTACCTG+TGG - chr1_3:4704042-4704061 Msa0098700:CDS 55.0%
TTGTGGGGTTACCTGTGGCT+TGG - chr1_3:4704047-4704066 Msa0098700:CDS 55.0%
!! GGGTTACCTGTGGCTTGGTT+TGG - chr1_3:4704052-4704071 Msa0098700:CDS 55.0%
!! TGGTGGATGATGGACTCTGG+AGG - chr1_3:4704700-4704719 Msa0098700:intron 55.0%
!! CCCACGGCGCCTTGTTTATA+TGG + chr1_3:4704741-4704760 None:intergenic 55.0%
GCCATGTCATGACGCCATGA+TGG - chr1_3:4704824-4704843 Msa0098700:intron 55.0%
TTGCAGATGAGGAGACAGGG+TGG - chr1_3:4705115-4705134 Msa0098700:intron 55.0%
GAGGAGACAGGGTGGTATGA+TGG - chr1_3:4705123-4705142 Msa0098700:intron 55.0%
! GTGCCGCTATTTGACAGCAC+GGG + chr1_3:4706095-4706114 None:intergenic 55.0%
ACCGGAGTTCGAGCAATACC+TGG - chr1_3:4706938-4706957 Msa0098700:CDS 55.0%
GACAGGGTGGTATGATGGCC+AGG - chr1_3:4705128-4705147 Msa0098700:intron 60.0%
TGCAGTCCGCCACAAGTGTG+TGG - chr1_3:4705329-4705348 Msa0098700:intron 60.0%
AGTCGGTCTGGCAGCATGCT+TGG - chr1_3:4706859-4706878 Msa0098700:CDS 60.0%
!! AACAAGGCGCCGTGGGCCTA+TGG - chr1_3:4704745-4704764 Msa0098700:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4703693 4707210 4703693 ID=Msa0098700;Name=Msa0098700
chr1_3 mRNA 4703693 4707210 4703693 ID=Msa0098700-mRNA-1;Parent=Msa0098700;Name=Msa0098700-mRNA-1;_AED=0.15;_eAED=0.15;_QI=62|1|1|1|1|1|4|177|252
chr1_3 exon 4703693 4704079 4703693 ID=Msa0098700-mRNA-1:exon:1693;Parent=Msa0098700-mRNA-1
chr1_3 exon 4705077 4705133 4705077 ID=Msa0098700-mRNA-1:exon:1692;Parent=Msa0098700-mRNA-1
chr1_3 exon 4705754 4705782 4705754 ID=Msa0098700-mRNA-1:exon:1691;Parent=Msa0098700-mRNA-1
chr1_3 exon 4706686 4707210 4706686 ID=Msa0098700-mRNA-1:exon:1690;Parent=Msa0098700-mRNA-1
chr1_3 five_prime_UTR 4707149 4707210 4707149 ID=Msa0098700-mRNA-1:five_prime_utr;Parent=Msa0098700-mRNA-1
chr1_3 CDS 4706686 4707148 4706686 ID=Msa0098700-mRNA-1:cds;Parent=Msa0098700-mRNA-1
chr1_3 CDS 4705754 4705782 4705754 ID=Msa0098700-mRNA-1:cds;Parent=Msa0098700-mRNA-1
chr1_3 CDS 4705077 4705133 4705077 ID=Msa0098700-mRNA-1:cds;Parent=Msa0098700-mRNA-1
chr1_3 CDS 4703870 4704079 4703870 ID=Msa0098700-mRNA-1:cds;Parent=Msa0098700-mRNA-1
chr1_3 three_prime_UTR 4703693 4703869 4703693 ID=Msa0098700-mRNA-1:three_prime_utr;Parent=Msa0098700-mRNA-1
Gene Sequence

>Msa0098700

ATGGCAACAATATCCATACGCATGTCCCCAAAACTATTCCCTCCATCAACAAAAACCCTTTTTCCCATTCACTCCAACAAATCAATCACCATTACCAACAACAGCAACAGAACAAAGTTATCGTTGCTCTGTTTAAGTTCAAGAAACGGAACAGAGTGTCCTGTTCCGTTAGAACAGCAGCCCATAAACGAGTACCAGTCGTTATCGACGTCGTTCCCGTTTTCATGGGCTGCTGGTGATGTTGTTGAATATGGTTCCCGGCTTTTTGTTGTGGGCTTTTCCTTTGCCTTGCTTGTGGGGTTACCTGTGGCTTGGTTTGGAACTGTTGGGGCACAATATGAGCCTGCTAAGAGAATTGTTTGTGCTGCTTCTAGTGGTGTTTTGGCGGTTACTTTTGCGGTTGTTAGGATGTATCTTGGTTGGGCTTATGTTGGGAATCGTTTGCTCAGTGCCACTGTTGAATATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAGACTGCTGAGGTTTTGGCACGTGATAGACTCTTGGGATCATTTTCTGTTAAGCCTGTACTCGGTAGATTGAAAATCACTCTAGTCGGTCTGGCAGCATGCTTGGTGACATGTGCACTTATCTTCATTAACATTGATGAAAGTTATTTAACATCGAGAGAAACCGGAGTTCGAGCAATACCTGGAGCTTACAATGATGAATCTGCAAGATCATTTGAACCAGATGCATTTTGTGGTGAGCCTGATCTTGAAGAATAG

Protein sequence

>Msa0098700

MATISIRMSPKLFPPSTKTLFPIHSNKSITITNNSNRTKLSLLCLSSRNGTECPVPLEQQPINEYQSLSTSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLAVTFAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKITLVGLAACLVTCALIFINIDESYLTSRETGVRAIPGAYNDESARSFEPDAFCGEPDLEE*