AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033580 MtrunA17_Chr1g0184761 96.350 137 5 0 1 137 1 137 9.27e-93 264
Msa0033580 MtrunA17_Chr7g0260701 75.912 137 32 1 1 137 1 136 6.39e-66 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033580 AT2G30570.1 62.319 138 46 4 1 137 1 133 1.86e-46 147

Find 51 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGTGTTCGGTCTTATC+TGG 0.197833 1_1:+61143398 Msa0033580:CDS
GTTTCATCCTCTCCTGTTCT+TGG 0.207350 1_1:+61142509 Msa0033580:CDS
ATTCATTTCAAGCAATTTAA+AGG 0.218602 1_1:-61143477 None:intergenic
TCCACCAATGCCATGGCTGC+TGG 0.247914 1_1:-61143304 None:intergenic
GGACTCAGCAACAACCTTCT+TGG 0.302937 1_1:+61143364 Msa0033580:CDS
CTTCCTACCTTAGCCATTGT+TGG 0.362196 1_1:-61143172 None:intergenic
TTCATTTCAAGCAATTTAAA+GGG 0.388432 1_1:-61143476 None:intergenic
TAAGACCGAACACACCAAAA+AGG 0.399989 1_1:-61143393 None:intergenic
TTAGTAAGTGTGGATGATTA+TGG 0.401065 1_1:-61142398 None:intergenic
CCACCAATGCCATGGCTGCT+GGG 0.401839 1_1:-61143303 None:intergenic
CCCAGCAGCCATGGCATTGG+TGG 0.403670 1_1:+61143303 Msa0033580:CDS
AAATTGCTTGAAATGAATCA+TGG 0.409618 1_1:+61143482 Msa0033580:exon
ACTTCACTTAAACTAGTATC+TGG 0.410001 1_1:+61142333 Msa0033580:five_prime_UTR
AGGAAGAGTGAGGTGTTCAA+TGG 0.414580 1_1:+61143189 Msa0033580:CDS
TTGCTTTCATTCACAGAAGA+AGG 0.414981 1_1:-61143220 None:intergenic
GAAGGAACCGGGCTTCCCTT+TGG 0.425729 1_1:+61143343 Msa0033580:CDS
CTTGAAGAGGATGAAGAGTC+TGG 0.434178 1_1:+61143448 Msa0033580:CDS
AGAATGAGCACTGAAGGAAC+CGG 0.435090 1_1:+61143331 Msa0033580:CDS
TGGTGTGTTCGGTCTTATCT+GGG 0.435857 1_1:+61143399 Msa0033580:CDS
CATGGCTGCTGGGCTTGACA+TGG 0.440621 1_1:-61143293 None:intergenic
ACAAACAGCATACCAAGAAC+AGG 0.443082 1_1:-61142521 None:intergenic
AAGCAACTCAAACATTAGAA+TGG 0.464632 1_1:+61143237 Msa0033580:CDS
GATACTAGTTTAAGTGAAGT+TGG 0.464655 1_1:-61142330 None:intergenic
TCAGCAACAACCTTCTTGGT+TGG 0.473672 1_1:+61143368 Msa0033580:CDS
AAGAGTGAGGTGTTCAATGG+AGG 0.482197 1_1:+61143192 Msa0033580:CDS
AGCAACTCAAACATTAGAAT+GGG 0.484436 1_1:+61143238 Msa0033580:CDS
TAAGAGCTTAAGAAAAGAAG+AGG 0.505449 1_1:-61143581 None:intergenic
AGAGTGAGGTGTTCAATGGA+GGG 0.518257 1_1:+61143193 Msa0033580:CDS
CATGTCAAGCCCAGCAGCCA+TGG 0.532954 1_1:+61143294 Msa0033580:CDS
AAGCCCAGCAGCCATGGCAT+TGG 0.535185 1_1:+61143300 Msa0033580:CDS
AATTGCTTGAAATGAATCAT+GGG 0.540449 1_1:+61143483 Msa0033580:exon
GATAGATTGAAGCTCATGGT+TGG 0.546901 1_1:-61142258 None:intergenic
GAGACAGAAGAGAAGTAGCT+TGG 0.552653 1_1:+61142355 Msa0033580:five_prime_UTR
AAGGTTGTTGCTGAGTCCAA+AGG 0.556907 1_1:-61143359 None:intergenic
TCTTTCATCCACCAATGCCA+TGG 0.558482 1_1:-61143311 None:intergenic
CAAGGATAGATTGAAGCTCA+TGG 0.568609 1_1:-61142262 None:intergenic
GCTGAGTCCAAAGGGAAGCC+CGG 0.571088 1_1:-61143350 None:intergenic
AGGATTGCCAACAATGGCTA+AGG 0.574193 1_1:+61143165 Msa0033580:intron
AGGTTGTTGCTGAGTCCAAA+GGG 0.582023 1_1:-61143358 None:intergenic
GATGAAAGAATGAGCACTGA+AGG 0.583467 1_1:+61143325 Msa0033580:CDS
AGTCCATGCACCACAAAACA+AGG 0.587249 1_1:-61142280 None:intergenic
GAATGAGCACTGAAGGAACC+GGG 0.588005 1_1:+61143332 Msa0033580:CDS
AGTTGTAGTGGTAGCTGAGA+TGG 0.594313 1_1:-61142441 None:intergenic
CTACGCGTCGAGTCTTGAAG+AGG 0.601810 1_1:+61143435 Msa0033580:CDS
TTATTCAGGATTGCCAACAA+TGG 0.611540 1_1:+61143159 Msa0033580:intron
TTGCCAACAATGGCTAAGGT+AGG 0.622185 1_1:+61143169 Msa0033580:CDS
GGTGATCGATGCAGTTGTAG+TGG 0.624319 1_1:-61142453 None:intergenic
AATTAATAATATCAGTGCAG+AGG 0.638910 1_1:-61142304 None:intergenic
CAGCATACCAAGAACAGGAG+AGG 0.671780 1_1:-61142516 None:intergenic
TGGCTAAGGTAGGAAGAGTG+AGG 0.686087 1_1:+61143179 Msa0033580:CDS
GGAGAGGATGAAACTGCAAG+AGG 0.693611 1_1:-61142500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAACAAAAATTAAAA+TGG + chr1_1:61142415-61142434 Msa0033580:exon 10.0%
!! TACTAAAACAAAAATTAAAA+TGG + chr1_1:61142415-61142434 Msa0033580:exon 10.0%
!!! TATATTTAGGATGAAAATTA+AGG - chr1_1:61142551-61142570 None:intergenic 15.0%
!! AATCATGTTATTGTATATTT+AGG - chr1_1:61142564-61142583 None:intergenic 15.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_1:61142858-61142877 Msa0033580:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_1:61143100-61143119 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_1:61143145-61143164 Msa0033580:intron 15.0%
!!! TATATTTAGGATGAAAATTA+AGG - chr1_1:61142551-61142570 None:intergenic 15.0%
!! AATCATGTTATTGTATATTT+AGG - chr1_1:61142564-61142583 None:intergenic 15.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_1:61142858-61142877 Msa0033580:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_1:61143100-61143119 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_1:61143145-61143164 Msa0033580:intron 15.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_1:61142411-61142430 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_1:61142607-61142626 Msa0033580:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_1:61142859-61142878 Msa0033580:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_1:61143479-61143498 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_1:61143480-61143499 None:intergenic 20.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_1:61142411-61142430 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_1:61142607-61142626 Msa0033580:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_1:61142859-61142878 Msa0033580:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_1:61143479-61143498 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_1:61143480-61143499 None:intergenic 20.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_1:61142307-61142326 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_1:61142623-61142642 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_1:61142640-61142659 Msa0033580:intron 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_1:61142830-61142849 None:intergenic 25.0%
! AACCAAATAGTAGTATAGAA+TGG - chr1_1:61142940-61142959 None:intergenic 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_1:61143482-61143501 Msa0033580:exon 25.0%
! AATTGCTTGAAATGAATCAT+GGG + chr1_1:61143483-61143502 Msa0033580:exon 25.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_1:61142307-61142326 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_1:61142623-61142642 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_1:61142640-61142659 Msa0033580:intron 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_1:61142830-61142849 None:intergenic 25.0%
! AACCAAATAGTAGTATAGAA+TGG - chr1_1:61142940-61142959 None:intergenic 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_1:61143482-61143501 Msa0033580:exon 25.0%
! AATTGCTTGAAATGAATCAT+GGG + chr1_1:61143483-61143502 Msa0033580:exon 25.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_1:61142270-61142289 Msa0033580:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_1:61142333-61142352 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_1:61142333-61142352 Msa0033580:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_1:61142401-61142420 None:intergenic 30.0%
TGCATGTTTGATATTACGAT+AGG + chr1_1:61142699-61142718 Msa0033580:intron 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_1:61142913-61142932 Msa0033580:intron 30.0%
GTCCATTCTATACTACTATT+TGG + chr1_1:61142935-61142954 Msa0033580:intron 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_1:61142958-61142977 Msa0033580:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_1:61143237-61143256 Msa0033580:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_1:61143238-61143257 Msa0033580:CDS 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_1:61143584-61143603 None:intergenic 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_1:61142270-61142289 Msa0033580:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_1:61142333-61142352 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_1:61142333-61142352 Msa0033580:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_1:61142401-61142420 None:intergenic 30.0%
TGCATGTTTGATATTACGAT+AGG + chr1_1:61142699-61142718 Msa0033580:intron 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_1:61142913-61142932 Msa0033580:intron 30.0%
GTCCATTCTATACTACTATT+TGG + chr1_1:61142935-61142954 Msa0033580:intron 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_1:61142958-61142977 Msa0033580:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_1:61143237-61143256 Msa0033580:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_1:61143238-61143257 Msa0033580:CDS 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_1:61143584-61143603 None:intergenic 30.0%
ACATAGCAAAAACCACATGT+TGG - chr1_1:61142741-61142760 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_1:61142911-61142930 None:intergenic 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_1:61143028-61143047 Msa0033580:intron 35.0%
CGTCAGTTTGATATTTGGTT+CGG + chr1_1:61143033-61143052 Msa0033580:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_1:61143159-61143178 Msa0033580:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_1:61143223-61143242 None:intergenic 35.0%
ACATAGCAAAAACCACATGT+TGG - chr1_1:61142741-61142760 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_1:61142911-61142930 None:intergenic 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_1:61143028-61143047 Msa0033580:intron 35.0%
CGTCAGTTTGATATTTGGTT+CGG + chr1_1:61143033-61143052 Msa0033580:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_1:61143159-61143178 Msa0033580:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_1:61143223-61143242 None:intergenic 35.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_1:61142261-61142280 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_1:61142265-61142284 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_1:61142277-61142296 Msa0033580:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_1:61142478-61142497 None:intergenic 40.0%
ACAAACAGCATACCAAGAAC+AGG - chr1_1:61142524-61142543 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_1:61142726-61142745 Msa0033580:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_1:61142821-61142840 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_1:61142880-61142899 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_1:61142931-61142950 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_1:61142990-61143009 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_1:61142991-61143010 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_1:61143325-61143344 Msa0033580:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_1:61143381-61143400 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_1:61143379-61143398 Msa0033580:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_1:61143388-61143407 Msa0033580:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_1:61143396-61143415 None:intergenic 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_1:61142261-61142280 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_1:61142265-61142284 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_1:61142277-61142296 Msa0033580:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_1:61142478-61142497 None:intergenic 40.0%
ACAAACAGCATACCAAGAAC+AGG - chr1_1:61142524-61142543 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_1:61142726-61142745 Msa0033580:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_1:61142821-61142840 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_1:61142880-61142899 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_1:61142931-61142950 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_1:61142990-61143009 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_1:61142991-61143010 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_1:61143325-61143344 Msa0033580:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_1:61143381-61143400 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_1:61143379-61143398 Msa0033580:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_1:61143388-61143407 Msa0033580:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_1:61143396-61143415 None:intergenic 40.0%
AGTCCATGCACCACAAAACA+AGG - chr1_1:61142283-61142302 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_1:61142355-61142374 Msa0033580:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_1:61142444-61142463 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_1:61142477-61142496 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_1:61142509-61142528 Msa0033580:CDS 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_1:61142874-61142893 Msa0033580:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_1:61142879-61142898 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_1:61143165-61143184 Msa0033580:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_1:61143169-61143188 Msa0033580:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_1:61143175-61143194 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_1:61143189-61143208 Msa0033580:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_1:61143192-61143211 Msa0033580:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_1:61143193-61143212 Msa0033580:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_1:61143314-61143333 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_1:61143331-61143350 Msa0033580:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_1:61143361-61143380 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_1:61143362-61143381 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_1:61143368-61143387 Msa0033580:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_1:61143398-61143417 Msa0033580:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_1:61143399-61143418 Msa0033580:CDS 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_1:61143448-61143467 Msa0033580:CDS 45.0%
AGTCCATGCACCACAAAACA+AGG - chr1_1:61142283-61142302 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_1:61142355-61142374 Msa0033580:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_1:61142444-61142463 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_1:61142477-61142496 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_1:61142509-61142528 Msa0033580:CDS 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_1:61142874-61142893 Msa0033580:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_1:61142879-61142898 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_1:61143165-61143184 Msa0033580:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_1:61143169-61143188 Msa0033580:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_1:61143175-61143194 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_1:61143189-61143208 Msa0033580:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_1:61143192-61143211 Msa0033580:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_1:61143193-61143212 Msa0033580:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_1:61143314-61143333 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_1:61143331-61143350 Msa0033580:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_1:61143361-61143380 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_1:61143362-61143381 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_1:61143368-61143387 Msa0033580:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_1:61143398-61143417 Msa0033580:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_1:61143399-61143418 Msa0033580:CDS 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_1:61143448-61143467 Msa0033580:CDS 45.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_1:61142456-61142475 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_1:61142503-61142522 None:intergenic 50.0%
CAGCATACCAAGAACAGGAG+AGG - chr1_1:61142519-61142538 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_1:61142985-61143004 Msa0033580:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_1:61143179-61143198 Msa0033580:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_1:61143332-61143351 Msa0033580:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_1:61143364-61143383 Msa0033580:CDS 50.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_1:61142456-61142475 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_1:61142503-61142522 None:intergenic 50.0%
CAGCATACCAAGAACAGGAG+AGG - chr1_1:61142519-61142538 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_1:61142985-61143004 Msa0033580:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_1:61143179-61143198 Msa0033580:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_1:61143332-61143351 Msa0033580:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_1:61143364-61143383 Msa0033580:CDS 50.0%
CTACGCGTCGAGTCTTGAAG+AGG + chr1_1:61143435-61143454 Msa0033580:CDS 55.0%
CTACGCGTCGAGTCTTGAAG+AGG + chr1_1:61143435-61143454 Msa0033580:CDS 55.0%
CATGGCTGCTGGGCTTGACA+TGG - chr1_1:61143296-61143315 None:intergenic 60.0%
CATGTCAAGCCCAGCAGCCA+TGG + chr1_1:61143294-61143313 Msa0033580:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_1:61143300-61143319 Msa0033580:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_1:61143306-61143325 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_1:61143307-61143326 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_1:61143343-61143362 Msa0033580:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_1:61143353-61143372 None:intergenic 60.0%
CATGGCTGCTGGGCTTGACA+TGG - chr1_1:61143296-61143315 None:intergenic 60.0%
CATGTCAAGCCCAGCAGCCA+TGG + chr1_1:61143294-61143313 Msa0033580:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_1:61143300-61143319 Msa0033580:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_1:61143306-61143325 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_1:61143307-61143326 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_1:61143343-61143362 Msa0033580:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_1:61143353-61143372 None:intergenic 60.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_1:61143303-61143322 Msa0033580:CDS 65.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_1:61143303-61143322 Msa0033580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61142252 61143687 61142252 ID=Msa0033580;Name=Msa0033580
chr1_1 mRNA 61142252 61143687 61142252 ID=Msa0033580-mRNA-1;Parent=Msa0033580;Name=Msa0033580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|1|1|2|204|137
chr1_1 exon 61142252 61142530 61142252 ID=Msa0033580-mRNA-1:exon:19168;Parent=Msa0033580-mRNA-1
chr1_1 exon 61143167 61143687 61143167 ID=Msa0033580-mRNA-1:exon:19169;Parent=Msa0033580-mRNA-1
chr1_1 five_prime_UTR 61142252 61142433 61142252 ID=Msa0033580-mRNA-1:five_prime_utr;Parent=Msa0033580-mRNA-1
chr1_1 CDS 61142434 61142530 61142434 ID=Msa0033580-mRNA-1:cds;Parent=Msa0033580-mRNA-1
chr1_1 CDS 61143167 61143483 61143167 ID=Msa0033580-mRNA-1:cds;Parent=Msa0033580-mRNA-1
chr1_1 three_prime_UTR 61143484 61143687 61143484 ID=Msa0033580-mRNA-1:three_prime_utr;Parent=Msa0033580-mRNA-1
Gene Sequence

>Msa0033580

ATGGCAACCATCTCAGCTACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTAGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGAATGAAAGCAACTCAAACATTAGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTCGGTCTTATCTGGGCTCTCTATTTTATCTACGCGTCGAGTCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTTTAA

Protein sequence

>Msa0033580

MATISATTTTASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVNESNSNIRMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL*