AlfalfaGEDB | Msa1407770

M. sativa cultivar zhongmu-4 / Msa1407770

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392
PFAM: PF03000.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407770	XP_013446810.2	98.710	310	4	0	1	310	321	630	0.0	640

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407770	sp\|Q9LFU0\|DOT3_ARATH	56.646	316	103	6	1	310	320	607	1.01e-101	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407770	A0A396GP87	98.710	310	4	0	1	310	321	630	0.0	640

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1407770	0.810484	1.126838e-50	-8.615850e-47
Msa0000610	Msa1407770	0.836309	1.009325e-56	-8.615850e-47
Msa0000800	Msa1407770	-0.808640	2.804315e-50	-8.615850e-47
Msa0001040	Msa1407770	0.838025	3.673632e-57	-8.615850e-47
Msa0001510	Msa1407770	0.876506	1.323343e-68	-8.615850e-47
Msa0002110	Msa1407770	0.841125	5.743677e-58	-8.615850e-47
Msa0002690	Msa1407770	0.891905	2.590582e-74	-8.615850e-47
Msa0002700	Msa1407770	0.889861	1.657130e-73	-8.615850e-47
Msa0003340	Msa1407770	0.822803	1.948040e-53	-8.615850e-47
Msa0004180	Msa1407770	0.888626	4.995363e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407770	MtrunA17_Chr8g0382231	98.710	310	4	0	1	310	321	630	0.0	640
Msa1407770	MtrunA17_Chr4g0050021	43.235	340	141	7	1	310	352	669	2.83e-75	243
Msa1407770	MtrunA17_Chr2g0279481	42.814	334	140	8	1	303	357	670	1.29e-74	242
Msa1407770	MtrunA17_Chr2g0303541	34.727	311	164	5	1	287	312	607	2.19e-54	187
Msa1407770	MtrunA17_Chr1g0195911	37.241	290	131	6	1	251	295	572	1.36e-50	176
Msa1407770	MtrunA17_Chr5g0401451	38.760	258	133	4	1	246	307	551	3.79e-50	175
Msa1407770	MtrunA17_Chr2g0285511	34.579	321	162	8	1	302	306	597	1.58e-49	173
Msa1407770	MtrunA17_Chr7g0268781	35.366	328	161	8	1	291	299	612	2.51e-49	173
Msa1407770	MtrunA17_Chr5g0401341	36.226	265	121	6	1	232	296	545	8.03e-48	169
Msa1407770	MtrunA17_Chr1g0181181	39.301	229	110	4	1	213	286	501	1.29e-46	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407770	AT5G10250.2	58.861	316	111	6	1	310	320	622	5.01e-110	332
Msa1407770	AT5G10250.1	56.646	316	103	6	1	310	320	607	1.02e-102	313
Msa1407770	AT5G64330.1	39.763	337	137	5	1	286	399	720	1.45e-70	233
Msa1407770	AT5G64330.3	46.667	225	78	2	1	196	340	551	3.68e-61	205
Msa1407770	AT5G64330.2	46.667	225	78	2	1	196	399	610	8.91e-61	205
Msa1407770	AT5G13600.1	34.936	312	158	7	1	295	308	591	6.37e-52	180
Msa1407770	AT1G03010.2	35.484	310	140	7	16	280	291	585	8.08e-48	169
Msa1407770	AT1G03010.1	35.484	310	140	7	16	280	318	612	8.46e-48	169
Msa1407770	AT1G03010.3	35.484	310	140	7	16	280	317	611	1.17e-47	169
Msa1407770	AT5G67385.4	41.709	199	99	2	1	194	246	432	1.42e-46	165

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Find 136 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTGTTGGGATTCGA+GGG	0.537749	tig0023324:-53326	None:intergenic
AAAATGATCAATGCGGAGGG+TGG	0.627548	tig0023324:-54457	None:intergenic
AAACATGAAATCACTTCAAG+TGG	0.548709	tig0023324:+53019	Msa1407770:five_prime_UTR
AAAGTCTGTTGGGATTCGAG+GGG	0.692715	tig0023324:-53325	None:intergenic
AAATTTAGGCTATATGCTTC+AGG	0.374622	tig0023324:-56873	None:intergenic
AACATTGTAATTGAAAGATT+TGG	0.262115	tig0023324:-55243	None:intergenic
AACCAAAGAATCTATCAGGC+TGG	0.531250	tig0023324:+56664	Msa1407770:CDS
AACCACTTATAATGTGCACA+AGG	0.667560	tig0023324:+53365	Msa1407770:five_prime_UTR
AAGAAAGCACGACAAATGTG+AGG	0.659530	tig0023324:-54260	None:intergenic
AAGACATAGATGTAGTACAA+CGG	0.746121	tig0023324:+55106	Msa1407770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATTGTAGTTAAGATGGT+GGG	-	tig0023324:52877-52896	None:intergenic	30.0%
TAGAATTGTAGTTAAGATGG+TGG	-	tig0023324:52878-52897	None:intergenic	30.0%
GTGTAGAATTGTAGTTAAGA+TGG	-	tig0023324:52881-52900	None:intergenic	30.0%
ACAGTACTCAGCATTAATTT+AGG	+	tig0023324:52911-52930	Msa1407770:five_prime_UTR	30.0%
AAACATGAAATCACTTCAAG+TGG	+	tig0023324:53019-53038	Msa1407770:five_prime_UTR	30.0%
CTTGAATTGAAAAGTCTGTT+GGG	-	tig0023324:53338-53357	None:intergenic	30.0%
ACTTGAATTGAAAAGTCTGT+TGG	-	tig0023324:53339-53358	None:intergenic	30.0%
TTGTGAAAATCTATCTCCAT+GGG	+	tig0023324:54314-54333	Msa1407770:five_prime_UTR	30.0%
ATACATTTACCAATGATCTC+TGG	-	tig0023324:54522-54541	None:intergenic	30.0%
ATTCCTAGATATCAAAATGG+AGG	+	tig0023324:54863-54882	Msa1407770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023324	gene	52862	56920	52862	ID=Msa1407770;Name=Msa1407770
tig0023324	mRNA	52862	56920	52862	ID=Msa1407770-mRNA-1;Parent=Msa1407770;Name=Msa1407770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1120\|1\|1\|1\|1\|0.83\|6\|93\|310
tig0023324	exon	52862	53159	52862	ID=Msa1407770-mRNA-1:exon:25253;Parent=Msa1407770-mRNA-1
tig0023324	exon	53317	53386	53317	ID=Msa1407770-mRNA-1:exon:25254;Parent=Msa1407770-mRNA-1
tig0023324	exon	54006	54903	54006	ID=Msa1407770-mRNA-1:exon:25255;Parent=Msa1407770-mRNA-1
tig0023324	exon	55074	55347	55074	ID=Msa1407770-mRNA-1:exon:25256;Parent=Msa1407770-mRNA-1
tig0023324	exon	55452	55580	55452	ID=Msa1407770-mRNA-1:exon:25257;Parent=Msa1407770-mRNA-1
tig0023324	exon	56444	56920	56444	ID=Msa1407770-mRNA-1:exon:25258;Parent=Msa1407770-mRNA-1
tig0023324	five_prime_UTR	52862	53159	52862	ID=Msa1407770-mRNA-1:five_prime_utr;Parent=Msa1407770-mRNA-1
tig0023324	five_prime_UTR	53317	53386	53317	ID=Msa1407770-mRNA-1:five_prime_utr;Parent=Msa1407770-mRNA-1
tig0023324	five_prime_UTR	54006	54757	54006	ID=Msa1407770-mRNA-1:five_prime_utr;Parent=Msa1407770-mRNA-1
tig0023324	CDS	54758	54903	54758	ID=Msa1407770-mRNA-1:cds;Parent=Msa1407770-mRNA-1
tig0023324	CDS	55074	55347	55074	ID=Msa1407770-mRNA-1:cds;Parent=Msa1407770-mRNA-1
tig0023324	CDS	55452	55580	55452	ID=Msa1407770-mRNA-1:cds;Parent=Msa1407770-mRNA-1
tig0023324	CDS	56444	56827	56444	ID=Msa1407770-mRNA-1:cds;Parent=Msa1407770-mRNA-1
tig0023324	three_prime_UTR	56828	56920	56828	ID=Msa1407770-mRNA-1:three_prime_utr;Parent=Msa1407770-mRNA-1

Gene Sequence

>Msa1407770

ATGCTAAAGATGGCAATGATGTATTCTGTATCATCAGCTCTCATTTCAGACCTTGAAAAGAGAGTTGGTATGGTGTTAGAAGATGCTGAGGTGAATGATCTCTTAATTCCTAGATATCAAAATGGAGGTCAAGGAAAAATGGTCAACATGCCTAATTCACCCGAAAACTGCACTATGCAAGACATAGATGTAGTACAACGGATTGTTGAATACTTCTTGATGCATGAAAAACAGCAAATGCAACTGCAACAAAAGTCCGGGAAATTCAATATTAGTAGGCTTTTGGACAATTACCTAGCTGAAGTTGCAACAGATCCAAATCTTTCAATTACAATGTTTCAAGTCTTAGCTGAATTACTGCCAGAACATACTCGATCATTTCACGATGGTCTATATAGAGCCATTGACACCTACCTAAAGACCCATCCTTCCCTAACTGACCAAGACCGTAGAAGACTCTGCAAAATAATGAACTGTGAAAAACTCTCACTTGATGCATGCATACATGCTGCACAAAATGATAGATTGCCTCTAAGAACAGTTGTCCAGGTTCTATTTGCAGAGCAAGTAAAGATGAGAGCAGCAATGCAAGAGAAGGAACCGGCACAAAGTGGAATCAACTCTCAACAGGATGTAAACCAGACATCTGAAACTATAGACATAAAAACACTCAAAGCAGAACTCGAGAATGTAAAGTCCAACATGGTAGAACTGCAGAACGACTACTTTGAGTTGCAAGAAGAGTATAAAAAGTTAACTAGCAACGACAAACCAAAGAATCTATCAGGCTGGAGTTTAAATTGGCGGAAGATCAAGAAATCCTTCCATGTAAAACCAACAGGAGGTGAAACTAGAGATGGACAAGATATGCCCACATCACCAAACCACACTCGTCGTAGATCAGCCCCGAGAAGAAGGCTCTCCGTGTCTTAA

Protein sequence

>Msa1407770

MLKMAMMYSVSSALISDLEKRVGMVLEDAEVNDLLIPRYQNGGQGKMVNMPNSPENCTMQDIDVVQRIVEYFLMHEKQQMQLQQKSGKFNISRLLDNYLAEVATDPNLSITMFQVLAELLPEHTRSFHDGLYRAIDTYLKTHPSLTDQDRRRLCKIMNCEKLSLDACIHAAQNDRLPLRTVVQVLFAEQVKMRAAMQEKEPAQSGINSQQDVNQTSETIDIKTLKAELENVKSNMVELQNDYFELQEEYKKLTSNDKPKNLSGWSLNWRKIKKSFHVKPTGGETRDGQDMPTSPNHTRRRSAPRRRLSVS*