AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601470 MtrunA17_Chr4g0026581 98.163 381 7 0 1 381 1 381 0.0 785
Msa0601470 MtrunA17_Chr4g0027491 75.000 380 92 2 3 379 8 387 0.0 618
Msa0601470 MtrunA17_Chr1g0208111 74.659 367 90 2 3 366 8 374 0.0 591
Msa0601470 MtrunA17_Chr1g0208571 70.449 379 91 3 3 378 8 368 0.0 558
Msa0601470 MtrunA17_Chr2g0300401 61.633 245 67 3 3 244 8 228 5.50e-103 303
Msa0601470 MtrunA17_Chr2g0327981 28.324 346 197 11 14 357 38 334 6.75e-30 117
Msa0601470 MtrunA17_Chr4g0023721 56.989 93 39 1 3 94 8 100 9.48e-30 110
Msa0601470 MtrunA17_Chr1g0195521 26.923 364 194 16 14 357 118 429 8.23e-24 102
Msa0601470 MtrunA17_Chr4g0067461 24.638 345 201 11 16 357 113 401 5.70e-22 96.7
Msa0601470 MtrunA17_Chr1g0182091 25.100 251 141 9 110 357 5 211 1.04e-13 70.1
Msa0601470 MtrunA17_Chr3g0145871 78.125 32 7 0 87 118 1 32 4.62e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601470 AT1G08200.1 75.066 381 92 2 2 379 6 386 0.0 617
Msa0601470 AT2G27860.1 74.016 381 96 2 2 379 6 386 0.0 608
Msa0601470 AT3G46440.2 27.746 346 199 10 14 357 29 325 1.90e-28 114
Msa0601470 AT3G46440.1 27.746 346 199 10 14 357 29 325 1.90e-28 114
Msa0601470 AT5G59290.4 27.457 346 200 11 14 357 1 297 6.78e-28 112
Msa0601470 AT5G59290.1 27.457 346 200 11 14 357 30 326 1.43e-27 111
Msa0601470 AT5G59290.3 27.507 349 202 11 11 357 20 319 1.67e-27 111
Msa0601470 AT5G59290.2 28.035 346 198 12 14 357 45 341 2.20e-27 111
Msa0601470 AT2G28760.1 27.746 346 199 11 14 357 31 327 2.21e-27 111
Msa0601470 AT2G28760.2 27.746 346 199 11 14 357 31 327 2.21e-27 111
Msa0601470 AT2G28760.3 27.746 346 199 11 14 357 31 327 2.21e-27 111
Msa0601470 AT2G28760.4 27.746 346 199 11 14 357 62 358 5.18e-27 110
Msa0601470 AT3G53520.1 28.857 350 189 17 14 357 120 415 5.59e-27 111
Msa0601470 AT3G53520.2 29.060 351 185 17 14 357 120 413 6.73e-25 105
Msa0601470 AT2G47650.2 26.149 348 207 13 14 357 121 422 9.66e-25 105
Msa0601470 AT3G62830.2 26.648 349 198 14 14 357 119 414 2.57e-24 104
Msa0601470 AT3G62830.1 26.648 349 198 14 14 357 119 414 2.57e-24 104
Msa0601470 AT2G47650.1 26.074 349 200 14 14 357 121 416 1.05e-23 102
Msa0601470 AT3G53520.3 27.451 255 146 11 14 264 120 339 1.14e-15 78.2

Find 101 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTCCATTTGCTCTATC+AGG 0.212687 4_2:-44181527 None:intergenic
TTAACAGATACTTCATTATC+TGG 0.251368 4_2:-44181566 None:intergenic
ATGACAGACAGGCTCATTTA+TGG 0.300625 4_2:+44180843 Msa0601470:CDS
CTATTGTGAGACCTTATAAC+TGG 0.307051 4_2:+44181146 Msa0601470:CDS
AGCAACTCTGCAAGTTGAAT+TGG 0.307114 4_2:+44182143 Msa0601470:exon
AGGGAAGCAAGAGACAAATA+AGG 0.328827 4_2:-44182342 None:intergenic
TGTGGAAGTTAGTTAATAAC+TGG 0.337606 4_2:-44179710 None:intergenic
TTTCTACGTGTGAGGTCTTT+GGG 0.341819 4_2:+44180420 Msa0601470:CDS
AACACACACAAAAGCTTTCA+TGG 0.346582 4_2:+44179792 Msa0601470:exon
AGTTCATCAAGAGATGTCTT+TGG 0.360698 4_2:-44182042 None:intergenic
CTTGGTCCAATCCAGTTATA+AGG 0.372591 4_2:-44181157 None:intergenic
CCAGGAATGAAGTCCATTCT+TGG 0.373462 4_2:-44181175 None:intergenic
TGATATAGAGAAAAGTTCTC+TGG 0.376155 4_2:-44181391 None:intergenic
TATGGCTTTGTGAGATGTTT+CGG 0.384939 4_2:-44179914 None:intergenic
TGCAGAGTTGCTCAAGTTGA+AGG 0.385548 4_2:-44182132 None:intergenic
ACTAGCTGAGCTTATGATAA+AGG 0.394087 4_2:+44181592 Msa0601470:CDS
GAGAAAATGCAGAGAGGAAG+AGG 0.403709 4_2:-44179749 None:intergenic
GCGTGATTGGTTTCCCGTCC+AGG 0.404306 4_2:-44179825 None:intergenic
CTGAAACAAGCTAAAACTCT+TGG 0.409574 4_2:-44181223 None:intergenic
CATATTGAGATCGGCGTGAT+TGG 0.409720 4_2:-44179838 None:intergenic
CCAAGAATGGACTTCATTCC+TGG 0.411557 4_2:+44181175 Msa0601470:CDS
GACCATCTCTGTTTATGAAC+TGG 0.420386 4_2:-44180801 None:intergenic
TCCTTGATAAGTCTCATCCT+TGG 0.421329 4_2:+44179971 Msa0601470:CDS
GGATTATAACACGCGGCCTT+TGG 0.424145 4_2:+44180207 Msa0601470:CDS
GACATCTCTTGATGAACTGT+TGG 0.432077 4_2:+44182047 Msa0601470:CDS
TTCAAGATGGTGATTGAAGA+AGG 0.434085 4_2:-44179678 None:intergenic
AGAGGAGACATCAATGACTA+TGG 0.439801 4_2:-44179932 None:intergenic
CTGGTGATGATTGTCATGTC+AGG 0.448491 4_2:-44181808 None:intergenic
AAGCTTTGACGAGAGTTTCA+AGG 0.460030 4_2:-44180041 None:intergenic
TCTTTGAGCTTGTAATATTG+AGG 0.462050 4_2:-44180753 None:intergenic
CCTTGATAAGTCTCATCCTT+GGG 0.467401 4_2:+44179972 Msa0601470:CDS
GTGAGACCTTATAACTGGAT+TGG 0.470330 4_2:+44181151 Msa0601470:CDS
ATAGCTGAGCATGCGGAGAA+TGG 0.470908 4_2:+44181112 Msa0601470:intron
GAGGTCTTTGGGAAGACAAT+TGG 0.475078 4_2:+44180431 Msa0601470:CDS
AGCAGAAGATATATGACTAT+AGG 0.475669 4_2:-44182278 None:intergenic
TAACTGGATTGGACCAAGAA+TGG 0.477010 4_2:+44181162 Msa0601470:CDS
GAGCCTCTCAAACTTGTTGA+TGG 0.489187 4_2:+44181359 Msa0601470:CDS
GGGAAGCAAGAGACAAATAA+GGG 0.494455 4_2:-44182341 None:intergenic
GATAACCCTGATAGAGCAAA+TGG 0.495280 4_2:+44181521 Msa0601470:CDS
TAACAGATACTTCATTATCT+GGG 0.496503 4_2:-44181565 None:intergenic
TGTACCTTTCTATACTCCTC+AGG 0.497124 4_2:-44180464 None:intergenic
ATGTCTGATGTTGATATTGA+AGG 0.498197 4_2:-44182077 None:intergenic
GGAAAGAGAAAAGGCGTGTG+TGG 0.500447 4_2:-44179728 None:intergenic
TGAAACAAGCTAAAACTCTT+GGG 0.503701 4_2:-44181222 None:intergenic
AAGGTATATGCAAAGGTGGC+TGG 0.511233 4_2:+44181700 Msa0601470:intron
GACTTCATTCCTGGTGTGGA+TGG 0.515549 4_2:+44181184 Msa0601470:CDS
AGAGGAAGAGGAAAGAGAAA+AGG 0.515563 4_2:-44179737 None:intergenic
TAATTTCATCGATGCGATCC+CGG 0.523625 4_2:+44180243 Msa0601470:CDS
GATATAGAGAAAAGTTCTCT+GGG 0.525949 4_2:-44181390 None:intergenic
ATATGCATGATCGGCGGTGG+AGG 0.526513 4_2:+44179856 Msa0601470:CDS
TCAATATGCATGATCGGCGG+TGG 0.527392 4_2:+44179853 Msa0601470:CDS
TGGATCGAGTGAACCTGGAC+GGG 0.529219 4_2:+44179812 Msa0601470:CDS
AAGGTTATGATGACAGTGAT+AGG 0.529228 4_2:+44181779 Msa0601470:CDS
TTTCATGGATCGAGTGAACC+TGG 0.529328 4_2:+44179807 Msa0601470:exon
TCCCTCTAGTCTATCAACTC+TGG 0.531156 4_2:+44181729 Msa0601470:CDS
ACTCTTGGGACACCATCACT+TGG 0.533733 4_2:-44181208 None:intergenic
TGACAGAATACCAAGCTGCC+TGG 0.535237 4_2:-44181827 None:intergenic
GTTTGAGAGGCTCGCCACGC+AGG 0.539294 4_2:-44181349 None:intergenic
CCCAAGGATGAGACTTATCA+AGG 0.539968 4_2:-44179972 None:intergenic
CTATATCAAAGATGCAATTG+AGG 0.540832 4_2:+44181406 Msa0601470:CDS
TTTCATTAAGGTATATGCAA+AGG 0.543621 4_2:+44181693 Msa0601470:intron
ATTTGTCAGATTGTCTCTCA+TGG 0.544220 4_2:-44182207 None:intergenic
ACAATCATCACCAGGCAGCT+TGG 0.544555 4_2:+44181817 Msa0601470:CDS
TGTGTCCATTTGCTCTATCA+GGG 0.545363 4_2:-44181526 None:intergenic
AAATGGACACATCTTTAATG+TGG 0.547790 4_2:+44181538 Msa0601470:CDS
CATTAAGGTATATGCAAAGG+TGG 0.552476 4_2:+44181696 Msa0601470:intron
GTGCAAAGCAGATGACAGAC+AGG 0.570500 4_2:+44180832 Msa0601470:CDS
TCTTGCTGCGATTTGTACAC+CGG 0.572521 4_2:+44180183 Msa0601470:CDS
TCCAGAGTTGATAGACTAGA+GGG 0.573185 4_2:-44181730 None:intergenic
GGTGTGGATGGTCCAAGTGA+TGG 0.573258 4_2:+44181196 Msa0601470:CDS
CCGATCTCAATATGCATGAT+CGG 0.574639 4_2:+44179847 Msa0601470:CDS
AATTGGTAGCTTTCTGCCTG+AGG 0.575752 4_2:+44180448 Msa0601470:CDS
GTCCAGTTCATAAACAGAGA+TGG 0.576229 4_2:+44180799 Msa0601470:CDS
CCGATCATGCATATTGAGAT+CGG 0.578859 4_2:-44179847 None:intergenic
TCTGCCTGAGGAGTATAGAA+AGG 0.581092 4_2:+44180460 Msa0601470:CDS
CCTCTCAAACTTGTTGATGG+TGG 0.583373 4_2:+44181362 Msa0601470:CDS
ATGGATCGAGTGAACCTGGA+CGG 0.589210 4_2:+44179811 Msa0601470:CDS
AATGGACACATCTTTAATGT+GGG 0.590992 4_2:+44181539 Msa0601470:CDS
ATCGGCGGTGGAGGATTCAT+CGG 0.591414 4_2:+44179865 Msa0601470:CDS
AGCAAGAGACAAATAAGGGA+AGG 0.592479 4_2:-44182337 None:intergenic
TCACTTGGACCATCCACACC+AGG 0.596283 4_2:-44181193 None:intergenic
ATCCAGAGTTGATAGACTAG+AGG 0.603381 4_2:-44181731 None:intergenic
TCATCTGATGAAACTCGATA+CGG 0.612036 4_2:-44179999 None:intergenic
CTGACATGACAATCATCACC+AGG 0.624329 4_2:+44181809 Msa0601470:CDS
CCACCATCAACAAGTTTGAG+AGG 0.628826 4_2:-44181362 None:intergenic
TGTCTGATGTTGATATTGAA+GGG 0.635641 4_2:-44182076 None:intergenic
GGCCGCGTGTTATAATCCGC+CGG 0.636617 4_2:-44180202 None:intergenic
AACTCGATACGGTTAGCCCA+AGG 0.640625 4_2:-44179988 None:intergenic
TAAATCTATAGCTGAGCATG+CGG 0.640819 4_2:+44181105 Msa0601470:intron
TGGTGATGATTGTCATGTCA+GGG 0.642852 4_2:-44181807 None:intergenic
TTACTGTAAATAGTATCCAA+AGG 0.643272 4_2:-44180223 None:intergenic
AATGGACTTCATTCCTGGTG+TGG 0.645922 4_2:+44181180 Msa0601470:CDS
AGAAGAGAGAAAATGCAGAG+AGG 0.648423 4_2:-44179755 None:intergenic
TGCTGCGATTTGTACACCGG+CGG 0.656615 4_2:+44180186 Msa0601470:CDS
GCAAGAGACAAATAAGGGAA+GGG 0.656696 4_2:-44182336 None:intergenic
TATATGATACACTAATTGTG+AGG 0.660077 4_2:+44182231 Msa0601470:three_prime_UTR
TTTCATCGATGCGATCCCGG+TGG 0.689547 4_2:+44180246 Msa0601470:CDS
ATCTCAATATGCATGATCGG+CGG 0.695000 4_2:+44179850 Msa0601470:CDS
AGAGTTGATAGACTAGAGGG+AGG 0.706272 4_2:-44181727 None:intergenic
TTGCTCTAGAATCTCCTGCG+TGG 0.708460 4_2:+44181335 Msa0601470:intron
CACCGGCGGATTATAACACG+CGG 0.709009 4_2:+44180200 Msa0601470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAAGTAAATAAAAAA+CGG - chr4_2:44180106-44180125 None:intergenic 10.0%
!! TCATCAAAAATAAATAAAAA+TGG - chr4_2:44180138-44180157 None:intergenic 10.0%
!!! AAAAAATTTAAAACATAACA+TGG + chr4_2:44180522-44180541 Msa0601470:intron 10.0%
!!! ATGAATGTAATCATATTTTT+CGG + chr4_2:44180596-44180615 Msa0601470:intron 15.0%
!! CTAAAAATTAAACATATCTT+TGG - chr4_2:44180656-44180675 None:intergenic 15.0%
!!! TTCTAAATTAGTTTTTAGAT+AGG + chr4_2:44181619-44181638 Msa0601470:intron 15.0%
!!! TTATTTCTCTTTAAAAACAA+AGG - chr4_2:44181651-44181670 None:intergenic 15.0%
!!! ATTTTTGATGATGTTGTTTT+TGG + chr4_2:44180147-44180166 Msa0601470:intron 20.0%
!!! TTTCATGTTTTTATGAAATC+TGG + chr4_2:44180335-44180354 Msa0601470:intron 20.0%
!!! CTCATTTTCTTTTTTCATTA+AGG + chr4_2:44181681-44181700 Msa0601470:intron 20.0%
! TTACTGTAAATAGTATCCAA+AGG - chr4_2:44180226-44180245 None:intergenic 25.0%
!! TTTTTATGAAATCTGGTTGA+TGG + chr4_2:44180342-44180361 Msa0601470:intron 25.0%
! TTAATATCAAGAGTCAGTTA+AGG - chr4_2:44181085-44181104 None:intergenic 25.0%
! TAACAGATACTTCATTATCT+GGG - chr4_2:44181568-44181587 None:intergenic 25.0%
! TTAACAGATACTTCATTATC+TGG - chr4_2:44181569-44181588 None:intergenic 25.0%
! TAAAGAGAAATAAACAACCT+TGG + chr4_2:44181658-44181677 Msa0601470:intron 25.0%
! TTTCATTAAGGTATATGCAA+AGG + chr4_2:44181693-44181712 Msa0601470:intron 25.0%
! ATTTGTATCTATGCATTGTT+TGG + chr4_2:44181857-44181876 Msa0601470:intron 25.0%
!! CTGTTTATTCTTGTGATTTT+AGG + chr4_2:44182012-44182031 Msa0601470:intron 25.0%
!!! TTATTCTTGTGATTTTAGGT+TGG + chr4_2:44182016-44182035 Msa0601470:intron 25.0%
! TATATGATACACTAATTGTG+AGG + chr4_2:44182231-44182250 Msa0601470:three_prime_UTR 25.0%
!! ATTCAAAAATCTAGAGTTAC+AGG - chr4_2:44182311-44182330 None:intergenic 25.0%
!!! CTGGTTTCTTTTTTTCAAGA+TGG - chr4_2:44179694-44179713 None:intergenic 30.0%
TGTGGAAGTTAGTTAATAAC+TGG - chr4_2:44179713-44179732 None:intergenic 30.0%
AAAATAAAAAACCTACCACC+GGG - chr4_2:44180264-44180283 None:intergenic 30.0%
CAAAATAAAAAACCTACCAC+CGG - chr4_2:44180265-44180284 None:intergenic 30.0%
TACAGCAAGAATCTCTTTAT+GGG + chr4_2:44180483-44180502 Msa0601470:intron 30.0%
TCTTTGAGCTTGTAATATTG+AGG - chr4_2:44180756-44180775 None:intergenic 30.0%
ATGGTTTCAATTTGACGTTT+CGG + chr4_2:44181013-44181032 Msa0601470:intron 30.0%
TGAAACAAGCTAAAACTCTT+GGG - chr4_2:44181225-44181244 None:intergenic 30.0%
! AAGCTTTGTGAAAAAAACAG+CGG - chr4_2:44181314-44181333 None:intergenic 30.0%
GATATAGAGAAAAGTTCTCT+GGG - chr4_2:44181393-44181412 None:intergenic 30.0%
TGATATAGAGAAAAGTTCTC+TGG - chr4_2:44181394-44181413 None:intergenic 30.0%
CTATATCAAAGATGCAATTG+AGG + chr4_2:44181406-44181425 Msa0601470:CDS 30.0%
AAATGGACACATCTTTAATG+TGG + chr4_2:44181538-44181557 Msa0601470:CDS 30.0%
AATGGACACATCTTTAATGT+GGG + chr4_2:44181539-44181558 Msa0601470:CDS 30.0%
TGAAAAAAGAAAATGAGCCA+AGG - chr4_2:44181678-44181697 None:intergenic 30.0%
TTGAAGCTTCAACAAAATCA+CGG - chr4_2:44181916-44181935 None:intergenic 30.0%
TGTCTGATGTTGATATTGAA+GGG - chr4_2:44182079-44182098 None:intergenic 30.0%
ATGTCTGATGTTGATATTGA+AGG - chr4_2:44182080-44182099 None:intergenic 30.0%
AGCAGAAGATATATGACTAT+AGG - chr4_2:44182281-44182300 None:intergenic 30.0%
TTCAAGATGGTGATTGAAGA+AGG - chr4_2:44179681-44179700 None:intergenic 35.0%
AACACACACAAAAGCTTTCA+TGG + chr4_2:44179792-44179811 Msa0601470:exon 35.0%
!! TATGGCTTTGTGAGATGTTT+CGG - chr4_2:44179917-44179936 None:intergenic 35.0%
!! GAGATGATTGATTTTCTCAG+AGG - chr4_2:44179953-44179972 None:intergenic 35.0%
TCATCTGATGAAACTCGATA+CGG - chr4_2:44180002-44180021 None:intergenic 35.0%
!!! CGGTGGTAGGTTTTTTATTT+TGG + chr4_2:44180263-44180282 Msa0601470:intron 35.0%
GTACAGCAAGAATCTCTTTA+TGG + chr4_2:44180482-44180501 Msa0601470:intron 35.0%
!!! ATTTTTCGGTGTCATGATGT+TGG + chr4_2:44180610-44180629 Msa0601470:intron 35.0%
AACACAAATTTGCATCATGC+AGG + chr4_2:44180728-44180747 Msa0601470:intron 35.0%
! GATGTGAGTCCTTGTATTTT+TGG + chr4_2:44180777-44180796 Msa0601470:CDS 35.0%
TGAACTGGACCAAAAATACA+AGG - chr4_2:44180789-44180808 None:intergenic 35.0%
GGCTCATTTATGGTAAACAA+AGG + chr4_2:44180853-44180872 Msa0601470:intron 35.0%
CGTCAAATTGAAACCATGTA+AGG - chr4_2:44181010-44181029 None:intergenic 35.0%
TAAATCTATAGCTGAGCATG+CGG + chr4_2:44181105-44181124 Msa0601470:intron 35.0%
CTATTGTGAGACCTTATAAC+TGG + chr4_2:44181146-44181165 Msa0601470:CDS 35.0%
CTGAAACAAGCTAAAACTCT+TGG - chr4_2:44181226-44181245 None:intergenic 35.0%
TATGCTATCATGTAACATGC+AGG + chr4_2:44181499-44181518 Msa0601470:intron 35.0%
ACTAGCTGAGCTTATGATAA+AGG + chr4_2:44181592-44181611 Msa0601470:CDS 35.0%
CATTAAGGTATATGCAAAGG+TGG + chr4_2:44181696-44181715 Msa0601470:intron 35.0%
! GTGAGTTCAGAAGTTTTCTA+TGG + chr4_2:44181754-44181773 Msa0601470:CDS 35.0%
! TCAGAAGTTTTCTATGGCAA+AGG + chr4_2:44181760-44181779 Msa0601470:CDS 35.0%
AAGGTTATGATGACAGTGAT+AGG + chr4_2:44181779-44181798 Msa0601470:CDS 35.0%
AAAATCACAATGTGCAACAG+TGG - chr4_2:44181958-44181977 None:intergenic 35.0%
AGTTCATCAAGAGATGTCTT+TGG - chr4_2:44182045-44182064 None:intergenic 35.0%
ATTTGTCAGATTGTCTCTCA+TGG - chr4_2:44182210-44182229 None:intergenic 35.0%
AGAGGAAGAGGAAAGAGAAA+AGG - chr4_2:44179740-44179759 None:intergenic 40.0%
AGAAGAGAGAAAATGCAGAG+AGG - chr4_2:44179758-44179777 None:intergenic 40.0%
! GAAAGCTTTTGTGTGTGTTG+TGG - chr4_2:44179791-44179810 None:intergenic 40.0%
CCGATCATGCATATTGAGAT+CGG - chr4_2:44179850-44179869 None:intergenic 40.0%
CCGATCTCAATATGCATGAT+CGG + chr4_2:44179847-44179866 Msa0601470:CDS 40.0%
ATCTCAATATGCATGATCGG+CGG + chr4_2:44179850-44179869 Msa0601470:CDS 40.0%
! TGTTTCGGACATCAGCTTTT+CGG - chr4_2:44179902-44179921 None:intergenic 40.0%
AGAGGAGACATCAATGACTA+TGG - chr4_2:44179935-44179954 None:intergenic 40.0%
TCCTTGATAAGTCTCATCCT+TGG + chr4_2:44179971-44179990 Msa0601470:CDS 40.0%
CCTTGATAAGTCTCATCCTT+GGG + chr4_2:44179972-44179991 Msa0601470:CDS 40.0%
! AAGCTTTGACGAGAGTTTCA+AGG - chr4_2:44180044-44180063 None:intergenic 40.0%
TAATTTCATCGATGCGATCC+CGG + chr4_2:44180243-44180262 Msa0601470:CDS 40.0%
!! GATTCACTTTTCTACGTGTG+AGG + chr4_2:44180412-44180431 Msa0601470:CDS 40.0%
! TTTTCTACGTGTGAGGTCTT+TGG + chr4_2:44180419-44180438 Msa0601470:CDS 40.0%
TTTCTACGTGTGAGGTCTTT+GGG + chr4_2:44180420-44180439 Msa0601470:CDS 40.0%
TGTACCTTTCTATACTCCTC+AGG - chr4_2:44180467-44180486 None:intergenic 40.0%
TGTTGGACACTTACATGTGT+CGG + chr4_2:44180627-44180646 Msa0601470:intron 40.0%
GTCCAGTTCATAAACAGAGA+TGG + chr4_2:44180799-44180818 Msa0601470:CDS 40.0%
GACCATCTCTGTTTATGAAC+TGG - chr4_2:44180804-44180823 None:intergenic 40.0%
ATGACAGACAGGCTCATTTA+TGG + chr4_2:44180843-44180862 Msa0601470:CDS 40.0%
TCAATGTCAGTATGTGTGTC+TGG - chr4_2:44180927-44180946 None:intergenic 40.0%
GTGAGACCTTATAACTGGAT+TGG + chr4_2:44181151-44181170 Msa0601470:CDS 40.0%
CTTGGTCCAATCCAGTTATA+AGG - chr4_2:44181160-44181179 None:intergenic 40.0%
! TAACTGGATTGGACCAAGAA+TGG + chr4_2:44181162-44181181 Msa0601470:CDS 40.0%
GATAACCCTGATAGAGCAAA+TGG + chr4_2:44181521-44181540 Msa0601470:CDS 40.0%
TGTGTCCATTTGCTCTATCA+GGG - chr4_2:44181529-44181548 None:intergenic 40.0%
ATGTGTCCATTTGCTCTATC+AGG - chr4_2:44181530-44181549 None:intergenic 40.0%
!! TCCAGAGTTGATAGACTAGA+GGG - chr4_2:44181733-44181752 None:intergenic 40.0%
!! ATCCAGAGTTGATAGACTAG+AGG - chr4_2:44181734-44181753 None:intergenic 40.0%
! TGGTGATGATTGTCATGTCA+GGG - chr4_2:44181810-44181829 None:intergenic 40.0%
GACATCTCTTGATGAACTGT+TGG + chr4_2:44182047-44182066 Msa0601470:CDS 40.0%
! AGCAACTCTGCAAGTTGAAT+TGG + chr4_2:44182143-44182162 Msa0601470:exon 40.0%
GCAAGAGACAAATAAGGGAA+GGG - chr4_2:44182339-44182358 None:intergenic 40.0%
AGCAAGAGACAAATAAGGGA+AGG - chr4_2:44182340-44182359 None:intergenic 40.0%
GGGAAGCAAGAGACAAATAA+GGG - chr4_2:44182344-44182363 None:intergenic 40.0%
AGGGAAGCAAGAGACAAATA+AGG - chr4_2:44182345-44182364 None:intergenic 40.0%
GAGAAAATGCAGAGAGGAAG+AGG - chr4_2:44179752-44179771 None:intergenic 45.0%
TTTCATGGATCGAGTGAACC+TGG + chr4_2:44179807-44179826 Msa0601470:exon 45.0%
CATATTGAGATCGGCGTGAT+TGG - chr4_2:44179841-44179860 None:intergenic 45.0%
CCCAAGGATGAGACTTATCA+AGG - chr4_2:44179975-44179994 None:intergenic 45.0%
TCTTGCTGCGATTTGTACAC+CGG + chr4_2:44180183-44180202 Msa0601470:CDS 45.0%
! GAGGTCTTTGGGAAGACAAT+TGG + chr4_2:44180431-44180450 Msa0601470:CDS 45.0%
! AATTGGTAGCTTTCTGCCTG+AGG + chr4_2:44180448-44180467 Msa0601470:CDS 45.0%
! TCTGCCTGAGGAGTATAGAA+AGG + chr4_2:44180460-44180479 Msa0601470:CDS 45.0%
TCAGTGTCAGACACCTTACA+TGG + chr4_2:44180994-44181013 Msa0601470:intron 45.0%
CCAGGAATGAAGTCCATTCT+TGG - chr4_2:44181178-44181197 None:intergenic 45.0%
! CCAAGAATGGACTTCATTCC+TGG + chr4_2:44181175-44181194 Msa0601470:CDS 45.0%
! AATGGACTTCATTCCTGGTG+TGG + chr4_2:44181180-44181199 Msa0601470:CDS 45.0%
CGTGAACAAGAAACAGAAGC+AGG - chr4_2:44181266-44181285 None:intergenic 45.0%
!! GAGCCTCTCAAACTTGTTGA+TGG + chr4_2:44181359-44181378 Msa0601470:CDS 45.0%
CCACCATCAACAAGTTTGAG+AGG - chr4_2:44181365-44181384 None:intergenic 45.0%
!! CCTCTCAAACTTGTTGATGG+TGG + chr4_2:44181362-44181381 Msa0601470:CDS 45.0%
AAGGTATATGCAAAGGTGGC+TGG + chr4_2:44181700-44181719 Msa0601470:intron 45.0%
!! AGAGTTGATAGACTAGAGGG+AGG - chr4_2:44181730-44181749 None:intergenic 45.0%
TCCCTCTAGTCTATCAACTC+TGG + chr4_2:44181729-44181748 Msa0601470:CDS 45.0%
! CTGGTGATGATTGTCATGTC+AGG - chr4_2:44181811-44181830 None:intergenic 45.0%
CTGACATGACAATCATCACC+AGG + chr4_2:44181809-44181828 Msa0601470:CDS 45.0%
!! TGCAGAGTTGCTCAAGTTGA+AGG - chr4_2:44182135-44182154 None:intergenic 45.0%
! GGAAAGAGAAAAGGCGTGTG+TGG - chr4_2:44179731-44179750 None:intergenic 50.0%
ATGGATCGAGTGAACCTGGA+CGG + chr4_2:44179811-44179830 Msa0601470:CDS 50.0%
TCAATATGCATGATCGGCGG+TGG + chr4_2:44179853-44179872 Msa0601470:CDS 50.0%
! AACTCGATACGGTTAGCCCA+AGG - chr4_2:44179991-44180010 None:intergenic 50.0%
GGATTATAACACGCGGCCTT+TGG + chr4_2:44180207-44180226 Msa0601470:CDS 50.0%
GTGCAAAGCAGATGACAGAC+AGG + chr4_2:44180832-44180851 Msa0601470:CDS 50.0%
ATAGCTGAGCATGCGGAGAA+TGG + chr4_2:44181112-44181131 Msa0601470:intron 50.0%
GACTTCATTCCTGGTGTGGA+TGG + chr4_2:44181184-44181203 Msa0601470:CDS 50.0%
ACTCTTGGGACACCATCACT+TGG - chr4_2:44181211-44181230 None:intergenic 50.0%
!! TTGCTCTAGAATCTCCTGCG+TGG + chr4_2:44181335-44181354 Msa0601470:intron 50.0%
ACAATCATCACCAGGCAGCT+TGG + chr4_2:44181817-44181836 Msa0601470:CDS 50.0%
TGACAGAATACCAAGCTGCC+TGG - chr4_2:44181830-44181849 None:intergenic 50.0%
TGGATCGAGTGAACCTGGAC+GGG + chr4_2:44179812-44179831 Msa0601470:CDS 55.0%
ATATGCATGATCGGCGGTGG+AGG + chr4_2:44179856-44179875 Msa0601470:CDS 55.0%
ATCGGCGGTGGAGGATTCAT+CGG + chr4_2:44179865-44179884 Msa0601470:CDS 55.0%
! CGGACATCAGCTTTTCGGTG+AGG - chr4_2:44179897-44179916 None:intergenic 55.0%
TGCTGCGATTTGTACACCGG+CGG + chr4_2:44180186-44180205 Msa0601470:CDS 55.0%
!! CACCGGCGGATTATAACACG+CGG + chr4_2:44180200-44180219 Msa0601470:CDS 55.0%
TTTCATCGATGCGATCCCGG+TGG + chr4_2:44180246-44180265 Msa0601470:CDS 55.0%
TCACTTGGACCATCCACACC+AGG - chr4_2:44181196-44181215 None:intergenic 55.0%
GGTGTGGATGGTCCAAGTGA+TGG + chr4_2:44181196-44181215 Msa0601470:CDS 55.0%
!! GCGTGATTGGTTTCCCGTCC+AGG - chr4_2:44179828-44179847 None:intergenic 60.0%
GGCCGCGTGTTATAATCCGC+CGG - chr4_2:44180205-44180224 None:intergenic 60.0%
ATCGATGCGATCCCGGTGGT+AGG + chr4_2:44180250-44180269 Msa0601470:intron 60.0%
GTTTGAGAGGCTCGCCACGC+AGG - chr4_2:44181352-44181371 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 44179678 44182365 44179678 ID=Msa0601470;Name=Msa0601470
chr4_2 mRNA 44179678 44182365 44179678 ID=Msa0601470-mRNA-1;Parent=Msa0601470;Name=Msa0601470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|1|1|1|1|1|9|222|381
chr4_2 exon 44179678 44180071 44179678 ID=Msa0601470-mRNA-1:exon:9693;Parent=Msa0601470-mRNA-1
chr4_2 exon 44180175 44180267 44180175 ID=Msa0601470-mRNA-1:exon:9694;Parent=Msa0601470-mRNA-1
chr4_2 exon 44180380 44180481 44180380 ID=Msa0601470-mRNA-1:exon:9695;Parent=Msa0601470-mRNA-1
chr4_2 exon 44180750 44180864 44180750 ID=Msa0601470-mRNA-1:exon:9696;Parent=Msa0601470-mRNA-1
chr4_2 exon 44181116 44181249 44181116 ID=Msa0601470-mRNA-1:exon:9697;Parent=Msa0601470-mRNA-1
chr4_2 exon 44181344 44181445 44181344 ID=Msa0601470-mRNA-1:exon:9698;Parent=Msa0601470-mRNA-1
chr4_2 exon 44181521 44181613 44181521 ID=Msa0601470-mRNA-1:exon:9699;Parent=Msa0601470-mRNA-1
chr4_2 exon 44181703 44181838 44181703 ID=Msa0601470-mRNA-1:exon:9700;Parent=Msa0601470-mRNA-1
chr4_2 exon 44182034 44182365 44182034 ID=Msa0601470-mRNA-1:exon:9701;Parent=Msa0601470-mRNA-1
chr4_2 five_prime_UTR 44179678 44179810 44179678 ID=Msa0601470-mRNA-1:five_prime_utr;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44179811 44180071 44179811 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44180175 44180267 44180175 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44180380 44180481 44180380 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44180750 44180864 44180750 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44181116 44181249 44181116 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44181344 44181445 44181344 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44181521 44181613 44181521 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44181703 44181838 44181703 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 CDS 44182034 44182143 44182034 ID=Msa0601470-mRNA-1:cds;Parent=Msa0601470-mRNA-1
chr4_2 three_prime_UTR 44182144 44182365 44182144 ID=Msa0601470-mRNA-1:three_prime_utr;Parent=Msa0601470-mRNA-1
Gene Sequence

>Msa0601470

ATGGATCGAGTGAACCTGGACGGGAAACCAATCACGCCGATCTCAATATGCATGATCGGCGGTGGAGGATTCATCGGATCACACCTCACCGAAAAGCTGATGTCCGAAACATCTCACAAAGCCATAGTCATTGATGTCTCCTCTGAGAAAATCAATCATCTCCTTGATAAGTCTCATCCTTGGGCTAACCGTATCGAGTTTCATCAGATGAATATCAAGAACGATTCTCGCCTTGAAACTCTCGTCAAAGCTTCTGATCTCACTATTAATCTTGCTGCGATTTGTACACCGGCGGATTATAACACGCGGCCTTTGGATACTATTTACAGTAATTTCATCGATGCGATCCCGGTGATTAAATTTTGTACTGAGAACAATAAGCGTTTGATTCACTTTTCTACGTGTGAGGTCTTTGGGAAGACAATTGGTAGCTTTCTGCCTGAGGAGTATAGAAAGGAACCTCAATATTACAAGCTCAAAGAAGATGTGAGTCCTTGTATTTTTGGTCCAGTTCATAAACAGAGATGGTCTTATGCATGTGCAAAGCAGATGACAGACAGGCTCATTTATGCTGAGCATGCGGAGAATGGACTCAAGTTCACTATTGTGAGACCTTATAACTGGATTGGACCAAGAATGGACTTCATTCCTGGTGTGGATGGTCCAAGTGATGGTGTCCCAAGAGTTTTAGCTTGTTTCAGTAATAATCTCCTGCGTGGCGAGCCTCTCAAACTTGTTGATGGTGGACATTCCCAGAGAACTTTTCTCTATATCAAAGATGCAATTGAGGCTGTTTTGTTAATGATTGATAACCCTGATAGAGCAAATGGACACATCTTTAATGTGGGAAACCCAGATAATGAAGTATCTGTTAAGCAACTAGCTGAGCTTATGATAAAGGTATATGCAAAGGTGGCTGGTGTACCTCCCTCTAGTCTATCAACTCTGGATGTGAGTTCAGAAGTTTTCTATGGCAAAGGTTATGATGACAGTGATAGGCGTATCCCTGACATGACAATCATCACCAGGCAGCTTGGTTGGAAGCCAAAGACATCTCTTGATGAACTGTTGGATTCTACCCTTCAATATCAACATCAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCTTCAACTTGA

Protein sequence

>Msa0601470

MDRVNLDGKPITPISICMIGGGGFIGSHLTEKLMSETSHKAIVIDVSSEKINHLLDKSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKEPQYYKLKEDVSPCIFGPVHKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSDGVPRVLACFSNNLLRGEPLKLVDGGHSQRTFLYIKDAIEAVLLMIDNPDRANGHIFNVGNPDNEVSVKQLAELMIKVYAKVAGVPPSSLSTLDVSSEVFYGKGYDDSDRRIPDMTIITRQLGWKPKTSLDELLDSTLQYQHQTYSHAIKKELSKPST*