AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072007


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072007.t1 MTR_2g007300 93.878 245 13 1 1 245 1 243 5.88e-165 456
MS.gene072007.t1 MTR_2g007640 64.500 200 68 2 49 245 49 248 1.27e-90 268
MS.gene072007.t1 MTR_2g007640 62.147 177 64 2 49 222 49 225 1.07e-73 224
MS.gene072007.t1 MTR_2g007640 58.333 96 38 1 49 142 49 144 1.13e-31 114
MS.gene072007.t1 MTR_1g116320 26.699 206 117 7 59 235 30 230 3.40e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072007.t1 AT3G26070 67.380 187 58 1 62 245 56 242 8.18e-92 270
MS.gene072007.t1 AT3G26080 55.459 229 91 4 23 245 11 234 1.87e-82 246
MS.gene072007.t1 AT3G26080 54.054 222 71 3 55 245 42 263 3.96e-76 231

Find 56 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGAAGTTCTTCTTTAA+TGG 0.206372 2.4:-75469922 None:intergenic
AAATTCGACACCTTCAAAAT+TGG 0.222420 2.4:+75471734 MS.gene072007:CDS
CACCCTCAGGGCCCAAAATA+TGG 0.233824 2.4:+75471553 MS.gene072007:CDS
TCAACCCTTTGTTGGTCTTC+AGG 0.234480 2.4:-75469981 None:intergenic
AAACTTGTTCATCTTGAAAA+TGG 0.247984 2.4:+75473375 MS.gene072007:CDS
ACGGTCCAGATTCCATATTT+TGG 0.250687 2.4:-75471565 None:intergenic
TGAACTTGAAATAACATATT+TGG 0.312424 2.4:+75473170 MS.gene072007:CDS
TTGCCTTTCTTAAAGATTGC+AGG 0.324447 2.4:-75469888 None:intergenic
CTCAAGTCTAGTTTACTTGA+TGG 0.329603 2.4:+75470138 MS.gene072007:CDS
GACTTGAGAGGCTGCTTTGT+TGG 0.380806 2.4:-75470123 None:intergenic
GCCACTTTCTTTGCATTTAG+CGG 0.398538 2.4:-75471707 None:intergenic
AGGGCCCAAAATATGGAATC+TGG 0.402604 2.4:+75471560 MS.gene072007:CDS
CAACCTGATCAACCCTTTGT+TGG 0.421516 2.4:-75469989 None:intergenic
TAGTAGCAAGGTTGTGATTG+TGG 0.421596 2.4:-75469830 None:intergenic
TTCCCTGCAATCTTTAAGAA+AGG 0.424398 2.4:+75469885 MS.gene072007:CDS
AAATGGTGGATCCATCTTAC+CGG 0.426574 2.4:+75473392 MS.gene072007:CDS
CAATCAATGCCGACACCCTC+AGG 0.430807 2.4:+75471540 MS.gene072007:CDS
TTCGACACCTTCAAAATTGG+AGG 0.433296 2.4:+75471737 MS.gene072007:CDS
TTTATGATGTGAATGATTTG+TGG 0.440863 2.4:-75469736 None:intergenic
AGTTCACCACGAGCTGTGTC+AGG 0.463279 2.4:-75473153 None:intergenic
AGACCAACAAAGGGTTGATC+AGG 0.472264 2.4:+75469986 MS.gene072007:CDS
CTAGTTTACTTGATGGAAAG+TGG 0.474058 2.4:+75470145 MS.gene072007:CDS
GAATAAGAATAAGAAGATAG+TGG 0.474828 2.4:-75469774 None:intergenic
AAAGAGTGAAGTAGAAGATA+AGG 0.481353 2.4:-75469700 None:intergenic
CATACAGGAACCCGGTAAGA+TGG 0.487267 2.4:-75473403 None:intergenic
AATAAGAAGATAGTGGTGAA+TGG 0.489559 2.4:-75469767 None:intergenic
TGCCTTTCTTAAAGATTGCA+GGG 0.492269 2.4:-75469887 None:intergenic
TCAGTCAATCTTGCAAACTA+AGG 0.501462 2.4:+75470188 MS.gene072007:CDS
CTTGTTCATCTTGAAAATGG+TGG 0.510401 2.4:+75473378 MS.gene072007:CDS
CCTTTGTTGGTCTTCAGGAG+TGG 0.511583 2.4:-75469976 None:intergenic
ATCTGGACCGTTCTTCAACC+AGG 0.530767 2.4:+75471577 MS.gene072007:CDS
ACCGCTAAATGCAAAGAAAG+TGG 0.543076 2.4:+75471706 MS.gene072007:CDS
GCTGTGTCAGGAGCCTTGAC+AGG 0.549937 2.4:-75473141 None:intergenic
CACTCCTGAAGACCAACAAA+GGG 0.562257 2.4:+75469977 MS.gene072007:CDS
TAGTTTACTTGATGGAAAGT+GGG 0.565466 2.4:+75470146 MS.gene072007:CDS
TCCTCGATCAAGTGATGCAA+TGG 0.566938 2.4:-75469946 None:intergenic
AAGAAGATAGTGGTGAATGG+AGG 0.568929 2.4:-75469764 None:intergenic
TTGGATTAACTGCTTCAAGT+TGG 0.577375 2.4:-75470104 None:intergenic
GGTTGTGATTGTGGTAGATG+AGG 0.590635 2.4:-75469821 None:intergenic
CCACTCCTGAAGACCAACAA+AGG 0.595548 2.4:+75469976 MS.gene072007:CDS
AATCAATGCCGACACCCTCA+GGG 0.596341 2.4:+75471541 MS.gene072007:CDS
AATGGTGGATCCATCTTACC+GGG 0.603396 2.4:+75473393 MS.gene072007:CDS
ATATTGACAGCATATCATAC+AGG 0.603645 2.4:-75473418 None:intergenic
GTTGTGATTGTGGTAGATGA+GGG 0.623766 2.4:-75469820 None:intergenic
TGTGTCACCTGGTTGAAGAA+CGG 0.624616 2.4:-75471584 None:intergenic
AGTTTGCAAGATTGACTGAG+AGG 0.637387 2.4:-75470184 None:intergenic
GAATGATTTGTGGTGTTGAG+AGG 0.643015 2.4:-75469726 None:intergenic
TCAAGTAAACTAGACTTGAG+AGG 0.643211 2.4:-75470135 None:intergenic
CAGCATATCATACAGGAACC+CGG 0.646536 2.4:-75473411 None:intergenic
ACATTTGCAGATACCTGTCA+AGG 0.647780 2.4:+75473128 MS.gene072007:intron
AAGGCTCCTGACACAGCTCG+TGG 0.649152 2.4:+75473147 MS.gene072007:CDS
AGGGTATCTAGAGGTGACAA+AGG 0.654729 2.4:+75473352 MS.gene072007:intron
GCCATTGCATCACTTGATCG+AGG 0.654824 2.4:+75469945 MS.gene072007:CDS
TAACTTGACAGGGTATCTAG+AGG 0.674173 2.4:+75473343 MS.gene072007:intron
TTGTGATTGTGGTAGATGAG+GGG 0.690034 2.4:-75469819 None:intergenic
CATATTTGGATGAAGAACTG+AGG 0.704904 2.4:+75473184 MS.gene072007:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAATCAATAATGATT+TGG - chr2.4:75471947-75471966 None:intergenic 15.0%
!! TAACAAGATAAAAATAGAAA+AGG + chr2.4:75470406-75470425 MS.gene072007:intron 15.0%
!! TATAATGATCAAAGTAATTA+TGG - chr2.4:75473104-75473123 None:intergenic 15.0%
!! TATTTATACTCATATAATGA+AGG + chr2.4:75470970-75470989 MS.gene072007:intron 15.0%
!! TTTACAAAATAGATATCAAT+GGG - chr2.4:75472822-75472841 None:intergenic 15.0%
!!! ATTTTTCAGAAACATTTTTA+TGG + chr2.4:75472528-75472547 MS.gene072007:intron 15.0%
!!! GTTACTTTTACTATAAATAT+AGG + chr2.4:75472577-75472596 MS.gene072007:intron 15.0%
!!! TTCTGAAAATAAGATAAAAA+TGG + chr2.4:75470477-75470496 MS.gene072007:intron 15.0%
!!! TTTTTCAGAAACATTTTTAT+GGG + chr2.4:75472529-75472548 MS.gene072007:intron 15.0%
!! AAAACAAGTATATAGAGTAT+AGG - chr2.4:75471132-75471151 None:intergenic 20.0%
!! AAAATTCATACATGTTACAT+TGG + chr2.4:75472232-75472251 MS.gene072007:intron 20.0%
!! AATAAGATAAAAATGGCTTA+TGG + chr2.4:75470484-75470503 MS.gene072007:intron 20.0%
!! ATTAAGTAGTTTATCCAAAT+AGG - chr2.4:75470247-75470266 None:intergenic 20.0%
!! CTTTACAAAATAGATATCAA+TGG - chr2.4:75472823-75472842 None:intergenic 20.0%
!! GATTTCATTCAAACTTAAAT+AGG + chr2.4:75471308-75471327 MS.gene072007:intron 20.0%
!! TAGAAAATATGTTGAAAACT+CGG - chr2.4:75472051-75472070 None:intergenic 20.0%
!! TGAAAAATGAAATTCTATTG+AGG + chr2.4:75472173-75472192 MS.gene072007:intron 20.0%
!! TGAACTTGAAATAACATATT+TGG + chr2.4:75473170-75473189 MS.gene072007:CDS 20.0%
!! TTAAGTAGTTTATCCAAATA+GGG - chr2.4:75470246-75470265 None:intergenic 20.0%
!! TTGGATAAACTACTTAATTA+AGG + chr2.4:75470249-75470268 MS.gene072007:intron 20.0%
!! TTGGATTTGATATGATAAAT+TGG + chr2.4:75470852-75470871 MS.gene072007:intron 20.0%
!!! CTTTGGAACAAAAAAAAATA+GGG + chr2.4:75472691-75472710 MS.gene072007:intron 20.0%
!!! TAAACGAATCAATATTTTGT+AGG + chr2.4:75471667-75471686 MS.gene072007:intron 20.0%
!!! TCTTTGGAACAAAAAAAAAT+AGG + chr2.4:75472690-75472709 MS.gene072007:intron 20.0%
!!! TTCAACATATTTTCTATGAT+AGG + chr2.4:75472055-75472074 MS.gene072007:intron 20.0%
! AAAAGTAACTCCCATAAAAT+TGG - chr2.4:75472566-75472585 None:intergenic 25.0%
! ACAAAAAAAAATAGGGTTTG+AGG + chr2.4:75472698-75472717 MS.gene072007:intron 25.0%
! ATAATGAGAAAGTTGACAAA+AGG - chr2.4:75473324-75473343 None:intergenic 25.0%
! ATATAGAAGCTGAAAATTAG+AGG - chr2.4:75471050-75471069 None:intergenic 25.0%
! ATATGGTAAGGAAAAAGAAA+TGG - chr2.4:75470218-75470237 None:intergenic 25.0%
! ATCAAGAAGTTCTTCTTTAA+TGG - chr2.4:75469925-75469944 None:intergenic 25.0%
! CAAAAAAAAATAGGGTTTGA+GGG + chr2.4:75472699-75472718 MS.gene072007:intron 25.0%
! CTAAGAGATGAAAAACAAAA+AGG - chr2.4:75471439-75471458 None:intergenic 25.0%
! GAATAAGAATAAGAAGATAG+TGG - chr2.4:75469777-75469796 None:intergenic 25.0%
! TACATATGAAAATGTTGAGT+TGG - chr2.4:75471649-75471668 None:intergenic 25.0%
! TTACTCATCATATAGTGAAA+CGG + chr2.4:75472843-75472862 MS.gene072007:intron 25.0%
! TTTATGATGTGAATGATTTG+TGG - chr2.4:75469739-75469758 None:intergenic 25.0%
! TTTCTCATTATAACTTGACA+GGG + chr2.4:75473333-75473352 MS.gene072007:intron 25.0%
!! AAACTTGTTCATCTTGAAAA+TGG + chr2.4:75473375-75473394 MS.gene072007:CDS 25.0%
!! AGCAATTTAAAGTTGAGATT+AGG - chr2.4:75473261-75473280 None:intergenic 25.0%
!! GATTTACAGTATGTATTTTG+TGG - chr2.4:75471155-75471174 None:intergenic 25.0%
!! GTTTGAATGAAATCTAAAAC+AGG - chr2.4:75471302-75471321 None:intergenic 25.0%
!! GTTTTCATATAAGCTATAAG+CGG + chr2.4:75470430-75470449 MS.gene072007:intron 25.0%
!! TACCTTTACATTTTGTAGTA+AGG - chr2.4:75472000-75472019 None:intergenic 25.0%
!!! AAACTTTTTTCACTCTGTTT+CGG + chr2.4:75471237-75471256 MS.gene072007:intron 25.0%
!!! CAGATTTGTTCCAATTTTAT+GGG + chr2.4:75472553-75472572 MS.gene072007:intron 25.0%
AAAAATACTGCACGCAAAAT+CGG - chr2.4:75472514-75472533 None:intergenic 30.0%
AAAGAGTGAAGTAGAAGATA+AGG - chr2.4:75469703-75469722 None:intergenic 30.0%
AAATTCGACACCTTCAAAAT+TGG + chr2.4:75471734-75471753 MS.gene072007:CDS 30.0%
ACACATTTGATGCATCATAA+TGG - chr2.4:75470780-75470799 None:intergenic 30.0%
ACTATTAGGATTGAGTTTCT+TGG + chr2.4:75472741-75472760 MS.gene072007:intron 30.0%
AGAAAAGCAACAACAAAACT+AGG + chr2.4:75472649-75472668 MS.gene072007:intron 30.0%
ATGAAAACATTAGAGAGAGT+TGG - chr2.4:75472088-75472107 None:intergenic 30.0%
ATGAAATGTTGCAGAAAACA+AGG - chr2.4:75470025-75470044 None:intergenic 30.0%
ATTTGCAACTTATAGCACAA+GGG - chr2.4:75470321-75470340 None:intergenic 30.0%
CCATAAAATTGGAACAAATC+TGG - chr2.4:75472555-75472574 None:intergenic 30.0%
CTCCTTACTACAAAATGTAA+AGG + chr2.4:75471995-75472014 MS.gene072007:intron 30.0%
CTTTCTCATTATAACTTGAC+AGG + chr2.4:75473332-75473351 MS.gene072007:intron 30.0%
GAAAAGCAACAACAAAACTA+GGG + chr2.4:75472650-75472669 MS.gene072007:intron 30.0%
GACTTATTTCATCTCATCTA+CGG - chr2.4:75470566-75470585 None:intergenic 30.0%
GGCTATTGTTGTATTCATAT+AGG - chr2.4:75471843-75471862 None:intergenic 30.0%
GTAACTGATCTCAAAAACTT+TGG - chr2.4:75471509-75471528 None:intergenic 30.0%
TAGTTTACTTGATGGAAAGT+GGG + chr2.4:75470146-75470165 MS.gene072007:CDS 30.0%
TATTTGCAACTTATAGCACA+AGG - chr2.4:75470322-75470341 None:intergenic 30.0%
TGAAAACATTAGAGAGAGTT+GGG - chr2.4:75472087-75472106 None:intergenic 30.0%
TTGCTACTATCTCACAAAAA+TGG + chr2.4:75469844-75469863 MS.gene072007:CDS 30.0%
TTGCTTTACTATCAATCTTG+TGG + chr2.4:75473276-75473295 MS.gene072007:intron 30.0%
TTGTATAGAGTTTGTCTCTT+TGG + chr2.4:75472674-75472693 MS.gene072007:intron 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr2.4:75472348-75472367 MS.gene072007:intron 30.0%
! AAAATTCATGTTTGCTGGAA+TGG + chr2.4:75472383-75472402 MS.gene072007:intron 30.0%
! AAATTCATGTTTGCTGGAAT+GGG + chr2.4:75472384-75472403 MS.gene072007:intron 30.0%
! AATAAGAAGATAGTGGTGAA+TGG - chr2.4:75469770-75469789 None:intergenic 30.0%
! ATTCCAGCAAACATGAATTT+TGG - chr2.4:75472384-75472403 None:intergenic 30.0%
! ATTTTTGTGAGATAGTAGCA+AGG - chr2.4:75469845-75469864 None:intergenic 30.0%
! CTGATAATGAATGACCTTAA+AGG + chr2.4:75471401-75471420 MS.gene072007:intron 30.0%
! TAGTTTTTCTAGATCTTCCT+CGG + chr2.4:75471969-75471988 MS.gene072007:intron 30.0%
! TTACATTTTGTAGTAAGGAG+AGG - chr2.4:75471995-75472014 None:intergenic 30.0%
! TTGTTGCTACTAGCTTAAAT+AGG + chr2.4:75470941-75470960 MS.gene072007:intron 30.0%
!! CCAGATTTGTTCCAATTTTA+TGG + chr2.4:75472552-75472571 MS.gene072007:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG + chr2.4:75472986-75473005 MS.gene072007:intron 30.0%
AAAATACTGCACGCAAAATC+GGG - chr2.4:75472513-75472532 None:intergenic 35.0%
AAATCCAACGCATAACAAAG+GGG - chr2.4:75470840-75470859 None:intergenic 35.0%
AAGTTGAGATTAGGTACACA+AGG - chr2.4:75473252-75473271 None:intergenic 35.0%
AATAAGCTGTTTGTCCAAAC+AGG + chr2.4:75470338-75470357 MS.gene072007:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr2.4:75472733-75472752 None:intergenic 35.0%
AGGATTGAGTTTCTTGGTTA+CGG + chr2.4:75472747-75472766 MS.gene072007:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr2.4:75472355-75472374 MS.gene072007:intron 35.0%
AGTGTAAACCTTGAGATAGA+GGG + chr2.4:75472609-75472628 MS.gene072007:intron 35.0%
ATATGTTGAAAACTCGGCTT+AGG - chr2.4:75472045-75472064 None:intergenic 35.0%
CAAATCCAACGCATAACAAA+GGG - chr2.4:75470841-75470860 None:intergenic 35.0%
CAACATCATCATCTCTTCTT+AGG + chr2.4:75472148-75472167 MS.gene072007:intron 35.0%
CATATTTGGATGAAGAACTG+AGG + chr2.4:75473184-75473203 MS.gene072007:CDS 35.0%
CCAATAACAAACTTGATGTG+TGG - chr2.4:75473032-75473051 None:intergenic 35.0%
CTACTTAATTAAGGCCTGTT+TGG + chr2.4:75470258-75470277 MS.gene072007:intron 35.0%
CTAGTTTACTTGATGGAAAG+TGG + chr2.4:75470145-75470164 MS.gene072007:CDS 35.0%
CTTGTTCATCTTGAAAATGG+TGG + chr2.4:75473378-75473397 MS.gene072007:CDS 35.0%
GAAAACATTAGAGAGAGTTG+GGG - chr2.4:75472086-75472105 None:intergenic 35.0%
GCAACAATGATCAATCTAGA+TGG - chr2.4:75470928-75470947 None:intergenic 35.0%
GCAACCAAAATCAAAGTGTA+TGG - chr2.4:75472993-75473012 None:intergenic 35.0%
GCAGAAAACAAGGCATATAA+AGG - chr2.4:75470015-75470034 None:intergenic 35.0%
GGCAATCAAGTAAACCTTTA+AGG - chr2.4:75471418-75471437 None:intergenic 35.0%
GTCTATGTCAATGCTTCATA+GGG - chr2.4:75470620-75470639 None:intergenic 35.0%
GTGATAACACTAGACATGAT+AGG - chr2.4:75472118-75472137 None:intergenic 35.0%
TAACACTGTCAAAATGTACC+AGG - chr2.4:75471354-75471373 None:intergenic 35.0%
TAGATGGTTAGTGAAATGAG+TGG - chr2.4:75470912-75470931 None:intergenic 35.0%
TATGAACTATGAGTCTGTCT+GGG - chr2.4:75470591-75470610 None:intergenic 35.0%
TCAAATCCAACGCATAACAA+AGG - chr2.4:75470842-75470861 None:intergenic 35.0%
TCAAGTAAACTAGACTTGAG+AGG - chr2.4:75470138-75470157 None:intergenic 35.0%
TCAGTCAATCTTGCAAACTA+AGG + chr2.4:75470188-75470207 MS.gene072007:CDS 35.0%
TCATCATATAGTGAAACGGA+GGG + chr2.4:75472847-75472866 MS.gene072007:intron 35.0%
TGCCTTTCTTAAAGATTGCA+GGG - chr2.4:75469890-75469909 None:intergenic 35.0%
TGTCTATGTCAATGCTTCAT+AGG - chr2.4:75470621-75470640 None:intergenic 35.0%
TTGCCTTTCTTAAAGATTGC+AGG - chr2.4:75469891-75469910 None:intergenic 35.0%
TTGCTGGAATGGGAAAAAAT+CGG + chr2.4:75472394-75472413 MS.gene072007:intron 35.0%
TTGGATTAACTGCTTCAAGT+TGG - chr2.4:75470107-75470126 None:intergenic 35.0%
! CTCAAGTCTAGTTTACTTGA+TGG + chr2.4:75470138-75470157 MS.gene072007:CDS 35.0%
! GCTTTTGTTGCTGGAAAAAT+CGG + chr2.4:75472464-75472483 MS.gene072007:intron 35.0%
! TACTAAGCCTCCAATTTTGA+AGG - chr2.4:75471747-75471766 None:intergenic 35.0%
! TCTTTTTCCTTACCATATGC+AGG + chr2.4:75470220-75470239 MS.gene072007:intron 35.0%
! TTCCCTGCAATCTTTAAGAA+AGG + chr2.4:75469885-75469904 MS.gene072007:CDS 35.0%
!! CCACACATCAAGTTTGTTAT+TGG + chr2.4:75473029-75473048 MS.gene072007:intron 35.0%
!! GCACTGACACTTTTAATTGA+AGG - chr2.4:75470703-75470722 None:intergenic 35.0%
!! TTTTCAGAAGCTCTCTAAGA+TGG - chr2.4:75470466-75470485 None:intergenic 35.0%
ACATTTGCAGATACCTGTCA+AGG + chr2.4:75473128-75473147 MS.gene072007:intron 40.0%
ACCGCTAAATGCAAAGAAAG+TGG + chr2.4:75471706-75471725 MS.gene072007:CDS 40.0%
ACTAAGTGAAGTCAGCTACA+TGG + chr2.4:75471875-75471894 MS.gene072007:intron 40.0%
ACTGTGGATCTAAATGCACA+GGG - chr2.4:75472286-75472305 None:intergenic 40.0%
ACTTATGCTATGAGCACTCA+GGG - chr2.4:75470364-75470383 None:intergenic 40.0%
AGGCCAAAATTCATGTTTGC+TGG + chr2.4:75472378-75472397 MS.gene072007:intron 40.0%
AGGTCAATTTGGACTGAACT+GGG + chr2.4:75472889-75472908 MS.gene072007:intron 40.0%
AGTCCAAATTGACCTAGTCT+AGG - chr2.4:75472884-75472903 None:intergenic 40.0%
AGTTTGCAAGATTGACTGAG+AGG - chr2.4:75470187-75470206 None:intergenic 40.0%
ATTAAGGCCTGTTTGGACTT+TGG + chr2.4:75470265-75470284 MS.gene072007:intron 40.0%
CAGTGTAAACCTTGAGATAG+AGG + chr2.4:75472608-75472627 MS.gene072007:intron 40.0%
CTATGAACTATGAGTCTGTC+TGG - chr2.4:75470592-75470611 None:intergenic 40.0%
CTCATCATATAGTGAAACGG+AGG + chr2.4:75472846-75472865 MS.gene072007:intron 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr2.4:75472358-75472377 MS.gene072007:intron 40.0%
GCATTTAGATCCACAGTAAG+TGG + chr2.4:75472289-75472308 MS.gene072007:intron 40.0%
GGATTGAGTTTCTTGGTTAC+GGG + chr2.4:75472748-75472767 MS.gene072007:intron 40.0%
GTCCAAATTGACCTAGTCTA+GGG - chr2.4:75472883-75472902 None:intergenic 40.0%
GTGTAAACCTTGAGATAGAG+GGG + chr2.4:75472610-75472629 MS.gene072007:intron 40.0%
GTTGTGATTGTGGTAGATGA+GGG - chr2.4:75469823-75469842 None:intergenic 40.0%
TACTGTGGATCTAAATGCAC+AGG - chr2.4:75472287-75472306 None:intergenic 40.0%
TAGCACAAGGGCTTATCATA+TGG - chr2.4:75470309-75470328 None:intergenic 40.0%
TAGGTCAATTTGGACTGAAC+TGG + chr2.4:75472888-75472907 MS.gene072007:intron 40.0%
TAGTAGCAAGGTTGTGATTG+TGG - chr2.4:75469833-75469852 None:intergenic 40.0%
TATACACACACCACTTACTG+TGG - chr2.4:75472302-75472321 None:intergenic 40.0%
TCAATTTCACTTGTGTCACC+TGG - chr2.4:75471598-75471617 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG + chr2.4:75472727-75472746 MS.gene072007:intron 40.0%
TCACTTAGTGGGATAAGACT+TGG - chr2.4:75471864-75471883 None:intergenic 40.0%
TCCAAATTGACCTAGTCTAG+GGG - chr2.4:75472882-75472901 None:intergenic 40.0%
TCTAAATGCACAGGGAATTG+CGG - chr2.4:75472278-75472297 None:intergenic 40.0%
TGTAAACCTTGAGATAGAGG+GGG + chr2.4:75472611-75472630 MS.gene072007:intron 40.0%
TTCCAACAGGCGTCAAAAAT+CGG - chr2.4:75472444-75472463 None:intergenic 40.0%
TTCGACACCTTCAAAATTGG+AGG + chr2.4:75471737-75471756 MS.gene072007:CDS 40.0%
TTGTGATTGTGGTAGATGAG+GGG - chr2.4:75469822-75469841 None:intergenic 40.0%
! AAGAAGATAGTGGTGAATGG+AGG - chr2.4:75469767-75469786 None:intergenic 40.0%
! ACGGTCCAGATTCCATATTT+TGG - chr2.4:75471568-75471587 None:intergenic 40.0%
! ATGTAGCTGACTTCACTTAG+TGG - chr2.4:75471876-75471895 None:intergenic 40.0%
! CGGTCCAGATTCCATATTTT+GGG - chr2.4:75471567-75471586 None:intergenic 40.0%
! GAATGATTTGTGGTGTTGAG+AGG - chr2.4:75469729-75469748 None:intergenic 40.0%
! GCCACTTTCTTTGCATTTAG+CGG - chr2.4:75471710-75471729 None:intergenic 40.0%
! TAACTTGACAGGGTATCTAG+AGG + chr2.4:75473343-75473362 MS.gene072007:intron 40.0%
! TGTAGCTGACTTCACTTAGT+GGG - chr2.4:75471875-75471894 None:intergenic 40.0%
! TTTGAGGGTTGATTCACCTT+GGG + chr2.4:75472714-75472733 MS.gene072007:intron 40.0%
!! AAATGGTGGATCCATCTTAC+CGG + chr2.4:75473392-75473411 MS.gene072007:CDS 40.0%
!! CTCTCGCTGTTTTCTACTTT+TGG + chr2.4:75472949-75472968 MS.gene072007:intron 40.0%
!! CTTTTAATTGAAGGCGTGTC+CGG - chr2.4:75470694-75470713 None:intergenic 40.0%
AAAACTCGGCTTAGGTGGTT+TGG - chr2.4:75472037-75472056 None:intergenic 45.0%
AATAGGGCCTGCATATGGTA+AGG - chr2.4:75470230-75470249 None:intergenic 45.0%
ACATTAGAGAGAGTTGGGGT+AGG - chr2.4:75472082-75472101 None:intergenic 45.0%
AGACCGTTTGAGAGAGCTTA+CGG - chr2.4:75470528-75470547 None:intergenic 45.0%
AGCCAATCCAAAGTCCAAAC+AGG - chr2.4:75470275-75470294 None:intergenic 45.0%
AGGGCCCAAAATATGGAATC+TGG + chr2.4:75471560-75471579 MS.gene072007:CDS 45.0%
AGGTCTCCTAAACTACCATC+TGG + chr2.4:75471328-75471347 MS.gene072007:intron 45.0%
AGTTTCTTGGTTACGGGAAG+AGG + chr2.4:75472754-75472773 MS.gene072007:intron 45.0%
ATCCAAATAGGGCCTGCATA+TGG - chr2.4:75470235-75470254 None:intergenic 45.0%
CAAACTTGATGTGTGGAGCA+AGG - chr2.4:75473025-75473044 None:intergenic 45.0%
CAACCTGATCAACCCTTTGT+TGG - chr2.4:75469992-75470011 None:intergenic 45.0%
CACTCCTGAAGACCAACAAA+GGG + chr2.4:75469977-75469996 MS.gene072007:CDS 45.0%
CACTTATGCTATGAGCACTC+AGG - chr2.4:75470365-75470384 None:intergenic 45.0%
CAGCAACAAAAGCTTCCAAC+AGG - chr2.4:75472457-75472476 None:intergenic 45.0%
CATCTACGGACATAATCACG+TGG - chr2.4:75470552-75470571 None:intergenic 45.0%
CATTGACACGTGTCATACAC+CGG + chr2.4:75470672-75470691 MS.gene072007:intron 45.0%
CTTCCGTAAGCTCTCTCAAA+CGG + chr2.4:75470522-75470541 MS.gene072007:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr2.4:75472776-75472795 MS.gene072007:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr2.4:75472780-75472799 MS.gene072007:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr2.4:75472779-75472798 MS.gene072007:intron 45.0%
GGTTGTGATTGTGGTAGATG+AGG - chr2.4:75469824-75469843 None:intergenic 45.0%
TACCATATGCAGGCCCTATT+TGG + chr2.4:75470230-75470249 MS.gene072007:intron 45.0%
TCAAAATGTACCAGGCCAGA+TGG - chr2.4:75471346-75471365 None:intergenic 45.0%
TCCAACAGGCGTCAAAAATC+GGG - chr2.4:75472443-75472462 None:intergenic 45.0%
TCCCCTAGACTAGGTCAATT+TGG + chr2.4:75472878-75472897 MS.gene072007:intron 45.0%
TCCTCGATCAAGTGATGCAA+TGG - chr2.4:75469949-75469968 None:intergenic 45.0%
TGTGTCACCTGGTTGAAGAA+CGG - chr2.4:75471587-75471606 None:intergenic 45.0%
TGTTGAAAACTCGGCTTAGG+TGG - chr2.4:75472042-75472061 None:intergenic 45.0%
! AAATCTAAAACAGGCCAGCC+CGG - chr2.4:75471293-75471312 None:intergenic 45.0%
! AGACCAACAAAGGGTTGATC+AGG + chr2.4:75469986-75470005 MS.gene072007:CDS 45.0%
! AGGGTATCTAGAGGTGACAA+AGG + chr2.4:75473352-75473371 MS.gene072007:intron 45.0%
! CTGTTGGAAGCTTTTGTTGC+TGG + chr2.4:75472455-75472474 MS.gene072007:intron 45.0%
! GTTTGAGGGTTGATTCACCT+TGG + chr2.4:75472713-75472732 MS.gene072007:intron 45.0%
!! AATGGTGGATCCATCTTACC+GGG + chr2.4:75473393-75473412 MS.gene072007:CDS 45.0%
!! ATTCCATATTTTGGGCCCTG+AGG - chr2.4:75471559-75471578 None:intergenic 45.0%
!! GGACTTTGGATTGGCTTGTT+AGG + chr2.4:75470279-75470298 MS.gene072007:intron 45.0%
!! TCAACCCTTTGTTGGTCTTC+AGG - chr2.4:75469984-75470003 None:intergenic 45.0%
!! TTCCATATTTTGGGCCCTGA+GGG - chr2.4:75471558-75471577 None:intergenic 45.0%
AATCAATGCCGACACCCTCA+GGG + chr2.4:75471541-75471560 MS.gene072007:CDS 50.0%
ACCAGGCCAGATGGTAGTTT+AGG - chr2.4:75471337-75471356 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr2.4:75472622-75472641 MS.gene072007:intron 50.0%
ATCTGGACCGTTCTTCAACC+AGG + chr2.4:75471577-75471596 MS.gene072007:CDS 50.0%
CATACAGGAACCCGGTAAGA+TGG - chr2.4:75473406-75473425 None:intergenic 50.0%
CCACTCCTGAAGACCAACAA+AGG + chr2.4:75469976-75469995 MS.gene072007:CDS 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr2.4:75472623-75472642 MS.gene072007:intron 50.0%
GCACAGGGAATTGCGGATAA+AGG - chr2.4:75472271-75472290 None:intergenic 50.0%
GCCATTGCATCACTTGATCG+AGG + chr2.4:75469945-75469964 MS.gene072007:CDS 50.0%
GGCCTGTTTGGACTTTGGAT+TGG + chr2.4:75470270-75470289 MS.gene072007:intron 50.0%
TCCTAAACTACCATCTGGCC+TGG + chr2.4:75471333-75471352 MS.gene072007:intron 50.0%
TTTCAGCCCCCTCTATCTCA+AGG - chr2.4:75472620-75472639 None:intergenic 50.0%
TTTGTAGTAAGGAGAGGCCG+AGG - chr2.4:75471989-75472008 None:intergenic 50.0%
! AACGCATAACAAAGGGGCAC+TGG - chr2.4:75470834-75470853 None:intergenic 50.0%
! AGTGCCCCTTTGTTATGCGT+TGG + chr2.4:75470833-75470852 MS.gene072007:intron 50.0%
! GACTTGAGAGGCTGCTTTGT+TGG - chr2.4:75470126-75470145 None:intergenic 50.0%
! GGCCCCGATTTTACCAAATC+GGG - chr2.4:75472492-75472511 None:intergenic 50.0%
! GGGCCCCGATTTTACCAAAT+CGG - chr2.4:75472493-75472512 None:intergenic 50.0%
!! CCTTTGTTGGTCTTCAGGAG+TGG - chr2.4:75469979-75469998 None:intergenic 50.0%
!! CGCCCGATTTGGTAAAATCG+GGG + chr2.4:75472487-75472506 MS.gene072007:intron 50.0%
!! GCGCCCGATTTGGTAAAATC+GGG + chr2.4:75472486-75472505 MS.gene072007:intron 50.0%
!! GGCGCCCGATTTGGTAAAAT+CGG + chr2.4:75472485-75472504 MS.gene072007:intron 50.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr2.4:75472766-75472785 MS.gene072007:intron 55.0%
AGTTCACCACGAGCTGTGTC+AGG - chr2.4:75473156-75473175 None:intergenic 55.0%
ATGAGCACTCAGGGCCTGTT+TGG - chr2.4:75470355-75470374 None:intergenic 55.0%
CAATCAATGCCGACACCCTC+AGG + chr2.4:75471540-75471559 MS.gene072007:CDS 55.0%
CACCCTCAGGGCCCAAAATA+TGG + chr2.4:75471553-75471572 MS.gene072007:CDS 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr2.4:75472759-75472778 MS.gene072007:intron 55.0%
GGAAAAATCGGCGCCCGATT+TGG + chr2.4:75472476-75472495 MS.gene072007:intron 55.0%
GGCCCCGAACTATGCAAATC+GGG - chr2.4:75472422-75472441 None:intergenic 55.0%
GGGCCCCGAACTATGCAAAT+CGG - chr2.4:75472423-75472442 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr2.4:75472765-75472784 MS.gene072007:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr2.4:75472758-75472777 MS.gene072007:intron 55.0%
! CGCCCGATTTGCATAGTTCG+GGG + chr2.4:75472417-75472436 MS.gene072007:intron 55.0%
! GCCCGATTTTTGACGCCTGT+TGG + chr2.4:75472439-75472458 MS.gene072007:intron 55.0%
! GCGCCCGATTTGCATAGTTC+GGG + chr2.4:75472416-75472435 MS.gene072007:intron 55.0%
! GGCGCCCGATTTGCATAGTT+CGG + chr2.4:75472415-75472434 MS.gene072007:intron 55.0%
!! ATTTTGGGCCCTGAGGGTGT+CGG - chr2.4:75471552-75471571 None:intergenic 55.0%
AAGGCTCCTGACACAGCTCG+TGG + chr2.4:75473147-75473166 MS.gene072007:CDS 60.0%
GCTGCTCTCTCCCCTAGACT+AGG + chr2.4:75472869-75472888 MS.gene072007:intron 60.0%
GCTGTGTCAGGAGCCTTGAC+AGG - chr2.4:75473144-75473163 None:intergenic 60.0%
!! TGAGTTAGCTTGCTGCCCGC+CGG + chr2.4:75471265-75471284 MS.gene072007:intron 60.0%
AAAACAGGCCAGCCCGGCGC+CGG - chr2.4:75471287-75471306 None:intergenic 70.0%
!!! AGCTTGCTGCCCGCCGGCGC+CGG + chr2.4:75471271-75471290 MS.gene072007:intron 80.0%
!! ACAGGCCAGCCCGGCGCCGG+CGG - chr2.4:75471284-75471303 None:intergenic 85.0%
!! GCTTGCTGCCCGCCGGCGCC+GGG + chr2.4:75471272-75471291 MS.gene072007:intron 85.0%
!!! CAGGCCAGCCCGGCGCCGGC+GGG - chr2.4:75471283-75471302 None:intergenic 90.0%
!! GCTGCCCGCCGGCGCCGGGC+TGG + chr2.4:75471276-75471295 MS.gene072007:intron 95.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 75469696 75473426 75469696 ID=MS.gene072007
chr2.4 mRNA 75469696 75473426 75469696 ID=MS.gene072007.t1;Parent=MS.gene072007
chr2.4 exon 75469696 75470007 75469696 ID=MS.gene072007.t1.exon1;Parent=MS.gene072007.t1
chr2.4 CDS 75469696 75470007 75469696 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
chr2.4 exon 75470096 75470209 75470096 ID=MS.gene072007.t1.exon2;Parent=MS.gene072007.t1
chr2.4 CDS 75470096 75470209 75470096 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
chr2.4 exon 75471503 75471598 75471503 ID=MS.gene072007.t1.exon3;Parent=MS.gene072007.t1
chr2.4 CDS 75471503 75471598 75471503 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
chr2.4 exon 75471689 75471763 75471689 ID=MS.gene072007.t1.exon4;Parent=MS.gene072007.t1
chr2.4 CDS 75471689 75471763 75471689 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
chr2.4 exon 75473138 75473205 75473138 ID=MS.gene072007.t1.exon5;Parent=MS.gene072007.t1
chr2.4 CDS 75473138 75473205 75473138 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
chr2.4 exon 75473354 75473426 75473354 ID=MS.gene072007.t1.exon6;Parent=MS.gene072007.t1
chr2.4 CDS 75473354 75473426 75473354 ID=cds.MS.gene072007.t1;Parent=MS.gene072007.t1
Gene Sequence

>MS.gene072007

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGGTTGCCTTTATATGCCTTGTTTTCTGCAACATTTCATAAGTTCTCATGCATGCATGCATGTTTTATTGATTAATTTCTAAATATATAGATTGCACGCCAACTTGAAGCAGTTAATCCAACAAAGCAGCCTCTCAAGTCTAGTTTACTTGATGGAAAGTGGGAGCTTATATACACTACCTCTCAGTCAATCTTGCAAACTAAGGTATTCCATTTCTTTTTCCTTACCATATGCAGGCCCTATTTGGATAAACTACTTAATTAAGGCCTGTTTGGACTTTGGATTGGCTTGTTAGGATTGCCATATGATAAGCCCTTGTGCTATAAGTTGCAAATAAGCTGTTTGTCCAAACAGGCCCTGAGTGCTCATAGCATAAGTGCTTATGTATAATTTGTTTCTATAACAAGATAAAAATAGAAAAGGTGTTTTCATATAAGCTATAAGCGGTATTCATAAGCCATCTTAGAGAGCTTCTGAAAATAAGATAAAAATGGCTTATGGATTTGTCATAAGTTTCTTCCGTAAGCTCTCTCAAACGGTCTTCCACGTGATTATGTCCGTAGATGAGATGAAATAAGTCAACCCAGACAGACTCATAGTTCATAGTTATACCCTATGAAGCATTGACATAGACATAAACACGTGATTAGATGTGTCAGTATTAGACATTGACACGTGTCATACACCGGACACGCCTTCAATTAAAAGTGTCAGTGCTACAACAAGTAATGTCTATATTGAACTCATAAATCATTCAATACTATATGTTAGCCATTATGATGCATCAAATGTGTGAGAACATTGCATGTTGTATACTTCTATCTACCAGTGCCCCTTTGTTATGCGTTGGATTTGATATGATAAATTGGAGCAGCTACTGAACATATTTATGTGCTACTTTAGCCACTCATTTCACTAACCATCTAGATTGATCATTGTTGCTACTAGCTTAAATAGGTTTGTTTATTTATACTCATATAATGAAGGAAATGCTCAATTTCTATTTCTTTTACATTAGTACATAATTTATAGTTTAACAAACCTCTAATTTTCAGCTTCTATATTATACTTTTGTTATTCGCTTTCATTTTCGCAAGACTAAATGATTCTTTAATTACAATAGCCTATACTCTATATACTTGTTTTCCACAAAATACATACTGTAAATCACAATTAGAATAAAAATAAAAATAAAAAAGTAAGTTCATAATTTCATAAAATCTAATTAGTCAAACTTTTTTCACTCTGTTTCGGTTTTGTGAGTTAGCTTGCTGCCCGCCGGCGCCGGGCTGGCCTGTTTTAGATTTCATTCAAACTTAAATAGGTCTCCTAAACTACCATCTGGCCTGGTACATTTTGACAGTGTTACTTTTATATATTCATCTCTTAGATAAACTGATAATGAATGACCTTAAAGGTTTACTTGATTGCCTTTTTGTTTTTCATCTCTTAGATAATGACTGTGTACTAACATTTTCAATATAATAATAATGACAGAGACCAAAGTTTTTGAGATCAGTTACAAATTATCAAGCAATCAATGCCGACACCCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACACAAGTGAAATTGAGATAAGTTCTCACTATTTATGCTGCGTTCCAACTCAACATTTTCATATGTAAACGAATCAATATTTTGTAGGTGACAGCAGATTTAACACCGCTAAATGCAAAGAAAGTGGCTGTGAAATTCGACACCTTCAAAATTGGAGGCTTAGTAAGTATTCAAAGTCTCAATAATCATCATCATTGAAAGTATACTTTGTAATATTCTAGATATAATTGCTTGAGAACCTATATGAATACAACAATAGCCAAGTCTTATCCCACTAAGTGAAGTCAGCTACATGGATCAAACAATGTCATAGTAATGTTCTATGATATATCATATCGCTATCCAAATCATTATTGATTTTTAGTAATAGTTTTTCTAGATCTTCCTCGGCCTCTCCTTACTACAAAATGTAAAGGTATTCTCTCTGCATGTCCAAACCACCTAAGCCGAGTTTTCAACATATTTTCTATGATAGGTCCTACCCCAACTCTCTCTAATGTTTTCATTTCTAATCCTATCATGTCTAGTGTTATCACACATCAAACGCAACATCATCATCTCTTCTTAGGAATGAAAAATGAAATTCTATTGAGGCTCTATGCAAATGCTAATTATCTAACAAGTATCAACAAAATTCATACATGTTACATTGGTTATAACTATTATCCTTTATCCGCAATTCCCTGTGCATTTAGATCCACAGTAAGTGGTGTGTGTATATACTTCTGCAGTTCTATTGAGTACTATTGTGAAAGTGACTCAAAATTGGAGTTTGGAGGCCAAAATTCATGTTTGCTGGAATGGGAAAAAATCGGCGCCCGATTTGCATAGTTCGGGGCCCGATTTTTGACGCCTGTTGGAAGCTTTTGTTGCTGGAAAAATCGGCGCCCGATTTGGTAAAATCGGGGCCCGATTTTGCGTGCAGTATTTTTCAGAAACATTTTTATGGGCCAGATTTGTTCCAATTTTATGGGAGTTACTTTTACTATAAATATAGGCATTATATCAGTGTAAACCTTGAGATAGAGGGGGCTGAAACAAGGGTTTAGAAAAGCAACAACAAAACTAGGGTTTGTATAGAGTTTGTCTCTTTGGAACAAAAAAAAATAGGGTTTGAGGGTTGATTCACCTTGGGAAACACTATTAGGATTGAGTTTCTTGGTTACGGGAAGAGGCTGGGATTTGGGTAGAATTAGGCGGGAGACTTATTATTGTAACCCATTGATATCTATTTTGTAAAGTTACTCATCATATAGTGAAACGGAGGGCTGCTCTCTCCCCTAGACTAGGTCAATTTGGACTGAACTGGGTCAACAAATTCTTTTGTGTTCTCTCTTCTTCTTTTCTCTCTCGCTGTTTTCTACTTTTGGCTTGTGTTTATAATTGTTCCATACACTTTGATTTTGGTTGCTTAATTATTCCTTGCTCCACACATCAAGTTTGTTATTGGTGTGTTTTCTCATCGAATTCACAACAAGTACTGTGTATAAATGTCAGTACCATAATTACTTTGATCATTATAATGTACATTTGCAGATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGTGAGTCACGTTTTATTCTTGTATGTTCATAAACTGCATTAGACCTTGTGTACCTAATCTCAACTTTAAATTGCTTTACTATCAATCTTGTGGTATATATAGATATTATCAAGTACCTTTTGTCAACTTTCTCATTATAACTTGACAGGGTATCTAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGTATGA

Protein sequence

>MS.gene072007.t1

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQIARQLEAVNPTKQPLKSSLLDGKWELIYTTSQSILQTKRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPV