AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125530 MtrunA17_Chr1g0186361 98.113 159 3 0 6 164 702 860 4.33e-111 335
Msa0125530 MtrunA17_Chr1g0168291 70.482 166 24 1 6 146 264 429 1.45e-78 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125530 AT3G23510.1 74.214 159 41 0 6 164 703 861 1.73e-87 273
Msa0125530 AT3G23530.1 74.843 159 40 0 6 164 703 861 2.11e-87 273
Msa0125530 AT3G23470.1 69.182 159 47 1 6 162 295 453 6.77e-82 249
Msa0125530 AT3G23470.3 69.182 159 47 1 6 162 322 480 2.68e-81 248
Msa0125530 AT3G23470.2 69.182 159 47 1 6 162 322 480 2.68e-81 248
Msa0125530 AT3G23480.3 69.182 159 47 1 6 162 235 393 2.82e-79 242
Msa0125530 AT3G23480.2 69.182 159 47 1 6 162 272 430 4.57e-79 243
Msa0125530 AT3G23480.1 66.443 149 50 0 6 154 293 441 5.02e-72 223
Msa0125530 AT3G23460.1 72.368 76 21 0 83 158 209 284 2.33e-37 130

Find 180 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACCTGCTCTTCAATTT+TGG 0.081221 1_3:-53991886 None:intergenic
TACATACCTTCCAATAAAAT+TGG 0.167387 1_3:-53991290 None:intergenic
TTGTGTTCTCAGTGAAATTT+TGG 0.197558 1_3:+53993773 Msa0125530:intron
ACCTGATGCTTTGAGATTAT+TGG 0.222421 1_3:+53989968 Msa0125530:five_prime_UTR
GTTGAGGTGTTACAGCTTAT+TGG 0.231147 1_3:+53991188 Msa0125530:intron
TCCAAAAGTCTTTAATAAAA+TGG 0.233751 1_3:-53985391 None:intergenic
CAAGAAGGTACCATGTGTTT+AGG 0.247042 1_3:-53990860 None:intergenic
GACTCATTGTGATCCATATC+TGG 0.256701 1_3:-53988943 None:intergenic
TGATGGACTTCTTGTTCTTC+AGG 0.266991 1_3:+53993115 Msa0125530:CDS
CTTGAAAATCGTTAAATTAG+AGG 0.272048 1_3:+53994174 Msa0125530:three_prime_UTR
TGATTTGGACCTTGGTTTCA+TGG 0.272691 1_3:+53985653 Msa0125530:five_prime_UTR
AAAGAAGAGCTTCAGAATAA+TGG 0.273819 1_3:+53989727 Msa0125530:five_prime_UTR
ATTGCAGCTCATGGAATTCT+TGG 0.274520 1_3:+53990812 Msa0125530:five_prime_UTR
TATGATGAGAGAAGAATTAT+TGG 0.288707 1_3:+53990005 Msa0125530:five_prime_UTR
TGCTCCTCTCTGCAGCTCTT+TGG 0.292680 1_3:+53989321 Msa0125530:intron
CTCACAGAATTATGTTAAAA+AGG 0.296176 1_3:+53989374 Msa0125530:five_prime_UTR
GACATCTGCAAAGTTCTTCA+TGG 0.299126 1_3:+53992021 Msa0125530:five_prime_UTR
ATTTCATGAAGATGGATTAA+AGG 0.305706 1_3:+53990643 Msa0125530:five_prime_UTR
TCAAAGAATTCCATCATATT+AGG 0.307032 1_3:-53988110 None:intergenic
CTAAACACATGGTACCTTCT+TGG 0.311391 1_3:+53990861 Msa0125530:five_prime_UTR
TTCCAATTTGTGGTTCTATT+TGG 0.319455 1_3:+53989136 Msa0125530:five_prime_UTR
GAATACATGGAAGAATTCTT+TGG 0.321598 1_3:+53993068 Msa0125530:CDS
GAGGAGCTGAATTGTCCTTT+TGG 0.322671 1_3:+53994193 Msa0125530:three_prime_UTR
AAGAAGGTACCATGTGTTTA+GGG 0.323024 1_3:-53990859 None:intergenic
TTGGTTTCATGGTCTTCAAT+AGG 0.325877 1_3:+53985664 Msa0125530:five_prime_UTR
TTTGGTTTCAGCTTATGTTT+TGG 0.332218 1_3:+53985548 Msa0125530:five_prime_UTR
AAACATGAAATTCTTGAGAT+TGG 0.333905 1_3:+53992543 Msa0125530:five_prime_UTR
AGTTAAAGATGCTGGCCTTC+AGG 0.335477 1_3:+53992669 Msa0125530:exon
GACCAAATAGAACCACAAAT+TGG 0.337397 1_3:-53989138 None:intergenic
TGGAAAGTGTTGTACCCTTC+AGG 0.338945 1_3:+53990832 Msa0125530:five_prime_UTR
CCTGATGCTTTGAGATTATT+GGG 0.341009 1_3:+53989969 Msa0125530:five_prime_UTR
TTTGCAGGATGTGTCGTTTA+CGG 0.342934 1_3:+53989895 Msa0125530:intron
TGGTTTCATGGTCTTCAATA+GGG 0.343252 1_3:+53985665 Msa0125530:five_prime_UTR
TTGGTTTCATCGTCTGAAAA+AGG 0.347734 1_3:+53989781 Msa0125530:five_prime_UTR
ATTGAAGTTGTTAAAAGAAC+TGG 0.353382 1_3:+53992588 Msa0125530:five_prime_UTR
TAATGCTGATGGTGTTGATT+TGG 0.360937 1_3:+53985638 Msa0125530:five_prime_UTR
ACATACCTTCCAATAAAATT+GGG 0.378336 1_3:-53991289 None:intergenic
TTGGTGTGGGATTAGTGGTT+TGG 0.384333 1_3:+53985530 Msa0125530:five_prime_UTR
ATGAATGAGGCTTGTGCTTA+GGG 0.386475 1_3:-53994039 None:intergenic
AGTAGTTGGTGTGGGATTAG+TGG 0.386588 1_3:+53985525 Msa0125530:five_prime_UTR
AAGAAGAGCTTCAGAATAAT+GGG 0.387322 1_3:+53989728 Msa0125530:five_prime_UTR
TGAACTCTCAAAACACTCTT+GGG 0.390652 1_3:-53991261 None:intergenic
CTAGCAGATGCATACATTAA+TGG 0.392160 1_3:+53991690 Msa0125530:five_prime_UTR
TGAGAGTCTTGGAGTTGAAA+TGG 0.395229 1_3:+53988130 Msa0125530:five_prime_UTR
TAAAGAACCAGTGGTAATAA+AGG 0.395909 1_3:-53990926 None:intergenic
TTGTCTGAGAACCCCTTGAT+TGG 0.401692 1_3:-53988977 None:intergenic
AATGAATGAGGCTTGTGCTT+AGG 0.402197 1_3:-53994040 None:intergenic
ATGGAATTCTTTGAGAGTCT+TGG 0.402654 1_3:+53988119 Msa0125530:five_prime_UTR
GGTTATGGATTTCATGAAGA+TGG 0.403889 1_3:+53990635 Msa0125530:intron
TGGCATCCGCATCCAGACTA+TGG 0.404974 1_3:+53993428 Msa0125530:CDS
ACAAAGTTTGTGTCACATAC+TGG 0.407521 1_3:+53990214 Msa0125530:five_prime_UTR
AACCACATTGACTCCACCTT+TGG 0.409238 1_3:-53985571 None:intergenic
CTGAGTTCCTTTATTACCAC+TGG 0.409745 1_3:+53990919 Msa0125530:five_prime_UTR
TATGGATCACAATGAGTCTT+GGG 0.410322 1_3:+53988948 Msa0125530:five_prime_UTR
GGCAGCAGAAACGGTTTGTC+CGG 0.410335 1_3:+53988209 Msa0125530:five_prime_UTR
AGTTCAAAGATGATGCTATA+AGG 0.411304 1_3:+53988297 Msa0125530:five_prime_UTR
CATACTCATGTGCAGTTTCA+AGG 0.412013 1_3:+53992248 Msa0125530:five_prime_UTR
TACTCATCATAACGCTCATC+CGG 0.413131 1_3:-53993325 None:intergenic
TCTCATGAGAAGAAGAAGAT+AGG 0.415817 1_3:+53985486 Msa0125530:five_prime_UTR
GCTTGAGAATAACCCAGATA+TGG 0.416608 1_3:+53988930 Msa0125530:five_prime_UTR
ATACTCTCACACAGGCTAGA+AGG 0.417607 1_3:+53992062 Msa0125530:five_prime_UTR
TTCCAAGCACTCCATGCTGC+TGG 0.419561 1_3:-53990171 None:intergenic
CAAAGGTCGCGGCTGTGAAT+GGG 0.421739 1_3:+53988187 Msa0125530:five_prime_UTR
GATGGTGTTGATTTGGACCT+TGG 0.425424 1_3:+53985645 Msa0125530:five_prime_UTR
ACCCAGCAGCATGGAGTGCT+TGG 0.427588 1_3:+53990169 Msa0125530:five_prime_UTR
TATTAGATTGTACCATAGTC+TGG 0.429735 1_3:-53993440 None:intergenic
GATATGAGAGTTGCAGTAGT+TGG 0.429736 1_3:+53985511 Msa0125530:five_prime_UTR
TGTATGTAGATTCCAATTTG+TGG 0.430851 1_3:+53989126 Msa0125530:intron
ATGAACTCTCAAAACACTCT+TGG 0.431743 1_3:-53991262 None:intergenic
ACAAAGGTCGCGGCTGTGAA+TGG 0.432001 1_3:+53988186 Msa0125530:five_prime_UTR
CGGAAAATACATTGCTTAAG+TGG 0.433103 1_3:+53990394 Msa0125530:five_prime_UTR
CCCAATAATCTCAAAGCATC+AGG 0.435357 1_3:-53989969 None:intergenic
ACGCACACTTGGGAATTATC+AGG 0.436845 1_3:+53993869 Msa0125530:CDS
CATGTGTCTTTAGGGGTTGG+TGG 0.437757 1_3:+53991972 Msa0125530:intron
TCGTAATCACCACCTACTTC+AGG 0.441427 1_3:+53989215 Msa0125530:five_prime_UTR
ACATTGCTTAAGTGGTCAAC+TGG 0.455428 1_3:+53990402 Msa0125530:five_prime_UTR
TCATTTGTTGATAAAGATGA+AGG 0.459873 1_3:+53991720 Msa0125530:five_prime_UTR
GTACCTTCTTGGAAAGAACT+TGG 0.464070 1_3:+53990872 Msa0125530:five_prime_UTR
TAGTTGTTTGCCACTCCAAA+AGG 0.466450 1_3:-53994208 None:intergenic
ATCAAGGGGTTCTCAGACAA+GGG 0.466893 1_3:+53988980 Msa0125530:five_prime_UTR
GTATGAGAAAGAAGATTACT+TGG 0.468571 1_3:+53985596 Msa0125530:five_prime_UTR
GGATGAATTTAAATCTCTGT+TGG 0.470475 1_3:-53991860 None:intergenic
TCTTCATGGACCATGTTTCA+AGG 0.471530 1_3:+53992035 Msa0125530:five_prime_UTR
AAACCAGCCGTAAATAAAAT+CGG 0.474194 1_3:-53991998 None:intergenic
GTGTTTAGGGTTGGCCTGAA+GGG 0.477380 1_3:-53990846 None:intergenic
GTCATGACACAGGCAGATTT+AGG 0.481912 1_3:+53991666 Msa0125530:five_prime_UTR
CTTGAGATTGGATGTGGATG+GGG 0.492917 1_3:+53992555 Msa0125530:five_prime_UTR
TAAAATGGACACGTTATTCG+TGG 0.494276 1_3:-53985376 None:intergenic
GCTGGCATGATTGCAGCTCA+TGG 0.494331 1_3:+53990803 Msa0125530:five_prime_UTR
GAAATTCTTGAGATTGGATG+TGG 0.499152 1_3:+53992549 Msa0125530:five_prime_UTR
AACAAGTGAGTGAACAAAAG+TGG 0.499916 1_3:-53985338 None:intergenic
ATACTGGCTAAACATTCTTC+AGG 0.502005 1_3:+53990230 Msa0125530:five_prime_UTR
TCTTGGGGCAATTCCAATCA+AGG 0.502815 1_3:+53988964 Msa0125530:five_prime_UTR
CTGAATGCAGTAACGTTCCC+AGG 0.504504 1_3:-53993997 None:intergenic
TTGCAGAATATTGAAGAAGC+AGG 0.504510 1_3:+53990333 Msa0125530:intron
TGTGTCGTTTACGGCAAAGA+TGG 0.505224 1_3:+53989904 Msa0125530:five_prime_UTR
TGTGAATGGGGCAGCAGAAA+CGG 0.505779 1_3:+53988200 Msa0125530:five_prime_UTR
GTAGAGCTAGACCATATTCA+AGG 0.506705 1_3:+53990462 Msa0125530:five_prime_UTR
TCCAAGCACTCCATGCTGCT+GGG 0.513463 1_3:-53990170 None:intergenic
TGTGTTTAGGGTTGGCCTGA+AGG 0.513499 1_3:-53990847 None:intergenic
ATTTGGTCGTGCTCTTCTGA+AGG 0.513562 1_3:+53989153 Msa0125530:five_prime_UTR
CATTTCTAGACATTATGATC+TGG 0.515475 1_3:+53992087 Msa0125530:five_prime_UTR
GCTTTGTATGCGGCAACTGA+TGG 0.517716 1_3:-53990435 None:intergenic
CCAACCCAAAATTGAAGAGC+AGG 0.517767 1_3:+53991881 Msa0125530:five_prime_UTR
ATATGGATCACAATGAGTCT+TGG 0.521608 1_3:+53988947 Msa0125530:five_prime_UTR
TCTTGAGATTGGATGTGGAT+GGG 0.525582 1_3:+53992554 Msa0125530:five_prime_UTR
TCAGTGATCCATACAAAAGC+TGG 0.525706 1_3:+53994016 Msa0125530:CDS
GGTGACCTATCCTAATATGA+TGG 0.526784 1_3:+53988100 Msa0125530:intron
TTTCTTGTCTCAACTTGTCA+CGG 0.528636 1_3:+53985312 Msa0125530:five_prime_UTR
CACAGCCGCGACCTTTGTCT+AGG 0.531262 1_3:-53988181 None:intergenic
CTTTGTATGCGGCAACTGAT+GGG 0.531762 1_3:-53990434 None:intergenic
TTTGTCCTAGTACCTGAAGT+AGG 0.534342 1_3:-53989227 None:intergenic
ATGAGCGTTATGATGAGTAT+AGG 0.536472 1_3:+53993329 Msa0125530:CDS
TCTAAATCCTGATCATGTAC+CGG 0.541730 1_3:+53990374 Msa0125530:five_prime_UTR
TGCCCAAGTTCTTTCCAAGA+AGG 0.545440 1_3:-53990875 None:intergenic
ACTCATTGTGATCCATATCT+GGG 0.550229 1_3:-53988942 None:intergenic
TATGCGGCAACTGATGGGAC+CGG 0.554214 1_3:-53990429 None:intergenic
AGTGAAATGATAGAAGCTGT+TGG 0.554426 1_3:+53993041 Msa0125530:intron
AGGTACCATGTGTTTAGGGT+TGG 0.558886 1_3:-53990855 None:intergenic
GTTGCCTACCCTCTCTAAGT+AGG 0.559456 1_3:+53993392 Msa0125530:CDS
TTCTTGAGATTGGATGTGGA+TGG 0.561971 1_3:+53992553 Msa0125530:five_prime_UTR
TCTCTCTGACAAAGTGATAC+CGG 0.563588 1_3:-53992622 None:intergenic
CGCAATGGCTAACTGTCAGA+TGG 0.563969 1_3:+53989349 Msa0125530:five_prime_UTR
AATCAAGGGGTTCTCAGACA+AGG 0.565361 1_3:+53988979 Msa0125530:five_prime_UTR
AGCTCTTTGGCAGACCGCAA+TGG 0.567297 1_3:+53989334 Msa0125530:intron
TCTCTTCTGTGCGAACAAGC+CGG 0.568782 1_3:-53988228 None:intergenic
AGAGTTGCAGTAGTTGGTGT+GGG 0.569799 1_3:+53985517 Msa0125530:five_prime_UTR
GAATTCCATCATATTAGGAT+AGG 0.570145 1_3:-53988105 None:intergenic
CAGTGGTAATAAAGGAACTC+AGG 0.570251 1_3:-53990918 None:intergenic
TCTATAGTTCATATCAATCC+CGG 0.573341 1_3:+53993306 Msa0125530:intron
AAAGGTCGCGGCTGTGAATG+GGG 0.574527 1_3:+53988188 Msa0125530:five_prime_UTR
ATGCGGCAACTGATGGGACC+GGG 0.576146 1_3:-53990428 None:intergenic
TACCTTCTTGGAAAGAACTT+GGG 0.576830 1_3:+53990873 Msa0125530:five_prime_UTR
TGTTACAGCTTATTGGAGGA+AGG 0.576939 1_3:+53991195 Msa0125530:intron
GAATCAGTAATGGCAAATGA+TGG 0.578032 1_3:+53993098 Msa0125530:CDS
AAAATTTCATGGAAAGGCAG+AGG 0.580802 1_3:+53993663 Msa0125530:CDS
ACTATCAAACACTAAGATTG+TGG 0.580836 1_3:+53993636 Msa0125530:CDS
CTTGGGGCAATTCCAATCAA+GGG 0.581559 1_3:+53988965 Msa0125530:five_prime_UTR
TAGTCTGGATGCGGATGCCA+TGG 0.583295 1_3:-53993425 None:intergenic
GGTTCTGAAGAAGTGTATGA+TGG 0.583424 1_3:+53989925 Msa0125530:five_prime_UTR
TGGTTGTTGTGAATCAGTAA+TGG 0.588714 1_3:+53993088 Msa0125530:CDS
CATTAATGTATGCATCTGCT+AGG 0.590392 1_3:-53991689 None:intergenic
TGCCGCAAAACCCAGCAGCA+TGG 0.590638 1_3:+53990160 Msa0125530:five_prime_UTR
AGAGAGGGTAGGCAACCTCC+TGG 0.591232 1_3:-53993385 None:intergenic
AAGTAGGATCACATCATCCA+TGG 0.591586 1_3:+53993408 Msa0125530:CDS
GAGGTGTTACAGCTTATTGG+AGG 0.595217 1_3:+53991191 Msa0125530:intron
TGATGTGATCCTACTTAGAG+AGG 0.597804 1_3:-53993401 None:intergenic
AGCTGTTGGACATGAATACA+TGG 0.598486 1_3:+53993055 Msa0125530:CDS
ATTGTACCATAGTCTGGATG+CGG 0.599048 1_3:-53993434 None:intergenic
ACTCATCATAACGCTCATCC+GGG 0.599580 1_3:-53993324 None:intergenic
AGTGTATGATGGATGCATAA+TGG 0.602793 1_3:+53989936 Msa0125530:five_prime_UTR
TAAGTGGTCAACTGGCCACC+CGG 0.607543 1_3:+53990410 Msa0125530:five_prime_UTR
CTCTACTGAAGCTTTGTATG+CGG 0.610654 1_3:-53990445 None:intergenic
GTCGAGCACGTTGAAAACTT+CGG 0.617161 1_3:+53993605 Msa0125530:CDS
TAGAGCTAGACCATATTCAA+GGG 0.617186 1_3:+53990463 Msa0125530:five_prime_UTR
TTGGGGCAATTCCAATCAAG+GGG 0.619509 1_3:+53988966 Msa0125530:five_prime_UTR
GTATTCTGCTAGAATGAATG+AGG 0.619545 1_3:-53994052 None:intergenic
GAGAGTTGCAGTAGTTGGTG+TGG 0.623259 1_3:+53985516 Msa0125530:five_prime_UTR
GAACTCTCAAAACACTCTTG+GGG 0.623317 1_3:-53991260 None:intergenic
AACTCTCAAAACACTCTTGG+GGG 0.623792 1_3:-53991259 None:intergenic
TATGAGAAAGAAGATTACTT+GGG 0.626650 1_3:+53985597 Msa0125530:five_prime_UTR
GAGAAAGAAGATTACTTGGG+AGG 0.629633 1_3:+53985600 Msa0125530:five_prime_UTR
GGCCAAAGGTGGAGTCAATG+TGG 0.638271 1_3:+53985569 Msa0125530:five_prime_UTR
TGAATGCAGTAACGTTCCCA+GGG 0.641508 1_3:-53993996 None:intergenic
CATCTGACAGTTAGCCATTG+CGG 0.644217 1_3:-53989348 None:intergenic
CATACCTTCCAATAAAATTG+GGG 0.646666 1_3:-53991288 None:intergenic
GATGTGATCCTACTTAGAGA+GGG 0.646927 1_3:-53993400 None:intergenic
GTCAGCCTAGACAAAGGTCG+CGG 0.650744 1_3:+53988176 Msa0125530:five_prime_UTR
ATGGATCACAATGAGTCTTG+GGG 0.657192 1_3:+53988949 Msa0125530:five_prime_UTR
TCAGGAATCTAGTTACAAAG+AGG 0.657976 1_3:-53990900 None:intergenic
AACTCACGTTAAAGAACCAG+TGG 0.662119 1_3:-53990935 None:intergenic
TACAGCTTATTGGAGGAAGG+AGG 0.662186 1_3:+53991198 Msa0125530:intron
TCAAGGGGTTCTCAGACAAG+GGG 0.675625 1_3:+53988981 Msa0125530:five_prime_UTR
AGAACTGGTTGCAAATACAC+CGG 0.676836 1_3:+53992603 Msa0125530:five_prime_UTR
TCAGGCCAACCCTAAACACA+TGG 0.680274 1_3:+53990850 Msa0125530:five_prime_UTR
CGGCAACTGATGGGACCGGG+TGG 0.683926 1_3:-53990425 None:intergenic
TGATCCTACTTAGAGAGGGT+AGG 0.687401 1_3:-53993396 None:intergenic
GTCCTAGTACCTGAAGTAGG+TGG 0.687844 1_3:-53989224 None:intergenic
TGTTTGTCAGGTCATGACAC+AGG 0.688622 1_3:+53991656 Msa0125530:intron
TATTGAAGACCATGAAACCA+AGG 0.698659 1_3:-53985662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTATTCCTTATT+AGG + chr1_3:53986487-53986506 Msa0125530:intron 10.0%
!!! TATAAAAAGAAATATTTTCT+TGG - chr1_3:53986690-53986709 None:intergenic 10.0%
!! TAATGCATTATTATATATAA+AGG - chr1_3:53986825-53986844 None:intergenic 10.0%
!! TCCATAAAAATATATAATTT+CGG + chr1_3:53987616-53987635 Msa0125530:intron 10.0%
!!! TATTTTATTATGTATTATGA+TGG - chr1_3:53987781-53987800 None:intergenic 10.0%
!! CATAATAAAATAAAATTAGT+TGG + chr1_3:53987789-53987808 Msa0125530:intron 10.0%
!! AAATTTATCAAAAACATTAT+AGG + chr1_3:53987869-53987888 Msa0125530:intron 10.0%
!!! TTAACTTTAACTAATTTTAT+GGG - chr1_3:53988734-53988753 None:intergenic 10.0%
!!! TAAGCAATATTTAATTTATT+TGG - chr1_3:53989291-53989310 None:intergenic 10.0%
!!! ATTTTTATCAATAAAAGTTT+AGG + chr1_3:53993485-53993504 Msa0125530:intron 10.0%
!!! AAAAATTATACTTTTTCAAA+AGG + chr1_3:53994261-53994280 Msa0125530:three_prime_UTR 10.0%
!! AAATAAAACAAGTAAAAAAG+TGG - chr1_3:53985708-53985727 None:intergenic 15.0%
!!! ATACATTAAGCAATATTTTA+TGG + chr1_3:53986088-53986107 Msa0125530:intron 15.0%
!!! TACATTAAGCAATATTTTAT+GGG + chr1_3:53986089-53986108 Msa0125530:intron 15.0%
!!! TATTTTGGATTATTAAAAAG+TGG - chr1_3:53986137-53986156 None:intergenic 15.0%
!! AATGAAGATGAATAAAATAT+AGG - chr1_3:53986285-53986304 None:intergenic 15.0%
!!! ACTCTCATTTTTTTTTTTAA+GGG + chr1_3:53986408-53986427 Msa0125530:intron 15.0%
!! CATTAACAATTTAACATAAA+TGG + chr1_3:53986946-53986965 Msa0125530:intron 15.0%
!!! ATCTTTAAAAAACTACTTTT+GGG + chr1_3:53987030-53987049 Msa0125530:intron 15.0%
!! AAATAATACCTTAAAATAGT+TGG - chr1_3:53987109-53987128 None:intergenic 15.0%
!!! ACCGAAATTATATATTTTTA+TGG - chr1_3:53987620-53987639 None:intergenic 15.0%
!! AATAGTTATCTTAAAAACTT+TGG + chr1_3:53987841-53987860 Msa0125530:intron 15.0%
!! TATTATAACTTTATTAGCAA+TGG + chr1_3:53988036-53988055 Msa0125530:intron 15.0%
!!! ATATATATCTTTTAGAAAGA+AGG - chr1_3:53988451-53988470 None:intergenic 15.0%
!!! CTTAACTTTAACTAATTTTA+TGG - chr1_3:53988735-53988754 None:intergenic 15.0%
!!! TATTTGTTGTTATAAAAATC+AGG + chr1_3:53989702-53989721 Msa0125530:intron 15.0%
!!! TCAAATAATAACTAATTTTG+AGG + chr1_3:53989753-53989772 Msa0125530:five_prime_UTR 15.0%
!! TATTAGACATGTAAAAAATT+AGG + chr1_3:53991128-53991147 Msa0125530:intron 15.0%
!!! TTTTTTTTTTAGATAAGCAA+TGG + chr1_3:53991441-53991460 Msa0125530:intron 15.0%
!! ATAAAAATAGAAGAATTCAA+CGG - chr1_3:53993473-53993492 None:intergenic 15.0%
!! TTTGATCTAGATTTATAATA+TGG - chr1_3:53993906-53993925 None:intergenic 15.0%
!!! TCCATTTTATTAAAGACTTT+TGG + chr1_3:53985390-53985409 Msa0125530:five_prime_UTR 20.0%
!! TCCAAAAGTCTTTAATAAAA+TGG - chr1_3:53985394-53985413 None:intergenic 20.0%
!! TAATTGTTCATAATTCATTG+AGG + chr1_3:53985759-53985778 Msa0125530:intron 20.0%
!!! CACTCTCATTTTTTTTTTTA+AGG + chr1_3:53986407-53986426 Msa0125530:intron 20.0%
!! AGTTAGTAAACAACTAAAAA+TGG + chr1_3:53986597-53986616 Msa0125530:intron 20.0%
!!! TAGTTAGATTTCACTTTTTA+AGG + chr1_3:53986767-53986786 Msa0125530:intron 20.0%
!!! CAAAAGTAGTTTTTTAAAGA+TGG - chr1_3:53987031-53987050 None:intergenic 20.0%
!!! CATCTTTAAAAAACTACTTT+TGG + chr1_3:53987029-53987048 Msa0125530:intron 20.0%
!! TAATATCTTTAATCCTTGAA+AGG - chr1_3:53987242-53987261 None:intergenic 20.0%
!! TGATTGATATTTCATCATTA+AGG - chr1_3:53987440-53987459 None:intergenic 20.0%
!! AATATATAATTTCGGTCATA+AGG + chr1_3:53987624-53987643 Msa0125530:intron 20.0%
!! AATATAATTGATCCATTTCA+AGG - chr1_3:53988007-53988026 None:intergenic 20.0%
!!! AGAATATTGATAATGTAACA+TGG + chr1_3:53988066-53988085 Msa0125530:intron 20.0%
!!! TTATTTTTGGCAAATGATTA+GGG + chr1_3:53988265-53988284 Msa0125530:five_prime_UTR 20.0%
!!! GTTTGTTTATTTGTTTTCTT+TGG + chr1_3:53988682-53988701 Msa0125530:intron 20.0%
!! ATAACAACAAATAGTTAATG+TGG - chr1_3:53989695-53989714 None:intergenic 20.0%
!!! AATAATAACTAATTTTGAGG+TGG + chr1_3:53989756-53989775 Msa0125530:five_prime_UTR 20.0%
!!! ATTTATCTTCCTTTTCTTAA+GGG - chr1_3:53989841-53989860 None:intergenic 20.0%
!!! AATTTATCTTCCTTTTCTTA+AGG - chr1_3:53989842-53989861 None:intergenic 20.0%
!! AATTGTTTCAATAGTTGTTA+CGG - chr1_3:53989876-53989895 None:intergenic 20.0%
!! AAACTGTCTTCATATTAATA+TGG - chr1_3:53990059-53990078 None:intergenic 20.0%
!! AATAATTATGCATTTGAACT+TGG - chr1_3:53990089-53990108 None:intergenic 20.0%
!! AAGTTCAAATGCATAATTAT+TGG + chr1_3:53990088-53990107 Msa0125530:intron 20.0%
!! TTTACGTAAATAGAATAATC+AGG - chr1_3:53990530-53990549 None:intergenic 20.0%
!!! TCAAAAGTTTTCATAATTGT+TGG + chr1_3:53990552-53990571 Msa0125530:intron 20.0%
!!! CAAAAGTTTTCATAATTGTT+GGG + chr1_3:53990553-53990572 Msa0125530:intron 20.0%
!! AATCAAAGCTTAGTTTATAA+TGG + chr1_3:53990667-53990686 Msa0125530:intron 20.0%
!! TAAAATTAAGTAGTTGCAAA+TGG + chr1_3:53991604-53991623 Msa0125530:intron 20.0%
!! TGGTATAAATTAAGACATTA+TGG + chr1_3:53992107-53992126 Msa0125530:intron 20.0%
!! GTAGTATTTACATGATATTT+AGG - chr1_3:53992302-53992321 None:intergenic 20.0%
!!! TTTTTCCGATATTATATGAT+AGG + chr1_3:53992365-53992384 Msa0125530:intron 20.0%
!! TTCATCCTATCATATAATAT+CGG - chr1_3:53992373-53992392 None:intergenic 20.0%
!!! ATTTTTCCTGAAATAAATCA+AGG + chr1_3:53992506-53992525 Msa0125530:intron 20.0%
!! AATATGATAGGATTATATCT+TGG + chr1_3:53992931-53992950 Msa0125530:intron 20.0%
!! AAATCATACAAATATAACCA+AGG - chr1_3:53993175-53993194 None:intergenic 20.0%
!! AAATAGTCATTAAAGATACA+TGG + chr1_3:53993238-53993257 Msa0125530:intron 20.0%
!!! ATAAAGGAATATATTTTTCC+AGG + chr1_3:53993367-53993386 Msa0125530:CDS 20.0%
!!! GAATACTATTTTGATTATTG+TGG + chr1_3:53993831-53993850 Msa0125530:CDS 20.0%
! TATGAGAAAGAAGATTACTT+GGG + chr1_3:53985597-53985616 Msa0125530:five_prime_UTR 25.0%
! TTGGATTATTAAAAAGTGGT+CGG - chr1_3:53986133-53986152 None:intergenic 25.0%
! TTATTCCTTATTAGGTTTCT+AGG + chr1_3:53986495-53986514 Msa0125530:intron 25.0%
! TATTCCTTATTAGGTTTCTA+GGG + chr1_3:53986496-53986515 Msa0125530:intron 25.0%
! AAAAATGGAAAGAAATGACA+AGG + chr1_3:53986612-53986631 Msa0125530:intron 25.0%
!!! CACTTTTTAAGGTAAATAAG+TGG + chr1_3:53986778-53986797 Msa0125530:intron 25.0%
!!! GAATTAGACAACTTTTGATT+CGG + chr1_3:53986907-53986926 Msa0125530:intron 25.0%
!! TGTTGTGGATTTAAAATTTC+TGG - chr1_3:53987298-53987317 None:intergenic 25.0%
! TTTAAATCCACAACAAAAGT+TGG + chr1_3:53987303-53987322 Msa0125530:intron 25.0%
! AGCTAAAAATTATTCCATGT+AGG + chr1_3:53987490-53987509 Msa0125530:intron 25.0%
! TTTCTACCTGAAACAATTAT+TGG - chr1_3:53987664-53987683 None:intergenic 25.0%
!!! CAATCATTTTAAAACCATCA+TGG + chr1_3:53987941-53987960 Msa0125530:intron 25.0%
! TCAAAGAATTCCATCATATT+AGG - chr1_3:53988113-53988132 None:intergenic 25.0%
!!! ATGCATTGAATCCTTATTTT+TGG + chr1_3:53988252-53988271 Msa0125530:five_prime_UTR 25.0%
! CTAATCATTTGCCAAAAATA+AGG - chr1_3:53988266-53988285 None:intergenic 25.0%
!!! CTTATTTTTGGCAAATGATT+AGG + chr1_3:53988264-53988283 Msa0125530:five_prime_UTR 25.0%
!! CAAGTACATAATCGATTTAT+CGG + chr1_3:53988320-53988339 Msa0125530:intron 25.0%
! GAAAGATTGAACTTATACAA+TGG - chr1_3:53988366-53988385 None:intergenic 25.0%
! TATAAGTTCAATCTTTCTGT+AGG + chr1_3:53988369-53988388 Msa0125530:intron 25.0%
! TATATATCCTGTGAAACAAT+TGG + chr1_3:53988464-53988483 Msa0125530:intron 25.0%
! AAACAATTGATCATGAAGTT+TGG - chr1_3:53988647-53988666 None:intergenic 25.0%
!!! TTATTTGTTTTCTTTGGAGA+CGG + chr1_3:53988688-53988707 Msa0125530:intron 25.0%
! AATATATCAGAATTCAGGAT+AGG - chr1_3:53988861-53988880 None:intergenic 25.0%
! CAACTAATATATCAGAATTC+AGG - chr1_3:53988866-53988885 None:intergenic 25.0%
! CTCACAGAATTATGTTAAAA+AGG + chr1_3:53989374-53989393 Msa0125530:five_prime_UTR 25.0%
! ATATCAGTACGATATATCTT+AGG - chr1_3:53989433-53989452 None:intergenic 25.0%
!!! ATATTTCAAGTTGACATATC+CGG + chr1_3:53989449-53989468 Msa0125530:intron 25.0%
! TTGAAATTAATCACATGTGT+TGG - chr1_3:53989501-53989520 None:intergenic 25.0%
! CTATCTTTGTTAATTGTTAC+TGG + chr1_3:53989527-53989546 Msa0125530:intron 25.0%
!! AACTATTGAAACAATTTTGC+AGG + chr1_3:53989880-53989899 Msa0125530:intron 25.0%
! TATGATGAGAGAAGAATTAT+TGG + chr1_3:53990005-53990024 Msa0125530:five_prime_UTR 25.0%
!! AATTATTGGTTGATCTGTAT+TGG + chr1_3:53990102-53990121 Msa0125530:intron 25.0%
!! TCATGATCAATGCATTTTTA+AGG - chr1_3:53990268-53990287 None:intergenic 25.0%
!! GGATTTAGAGTTACAAAAAA+TGG - chr1_3:53990363-53990382 None:intergenic 25.0%
!! TTTTTCTTTTCCCTTGAATA+TGG - chr1_3:53990476-53990495 None:intergenic 25.0%
!!! AAAAGAAAAATCTGGTTTTC+TGG + chr1_3:53990486-53990505 Msa0125530:five_prime_UTR 25.0%
!!! AAAGAAAAATCTGGTTTTCT+GGG + chr1_3:53990487-53990506 Msa0125530:five_prime_UTR 25.0%
!!! ATTTCATGAAGATGGATTAA+AGG + chr1_3:53990643-53990662 Msa0125530:five_prime_UTR 25.0%
! ACATACCTTCCAATAAAATT+GGG - chr1_3:53991292-53991311 None:intergenic 25.0%
! TACATACCTTCCAATAAAAT+TGG - chr1_3:53991293-53991312 None:intergenic 25.0%
!! TTCTAAATTTTGCAAGAACT+AGG + chr1_3:53991314-53991333 Msa0125530:intron 25.0%
! GAAAAAATCATAGTCATTGA+AGG - chr1_3:53991483-53991502 None:intergenic 25.0%
!! TCATTTGTTGATAAAGATGA+AGG + chr1_3:53991720-53991739 Msa0125530:five_prime_UTR 25.0%
! CTATTAATATACCTTAGTGT+AGG - chr1_3:53991930-53991949 None:intergenic 25.0%
! CTACACTAAGGTATATTAAT+AGG + chr1_3:53991928-53991947 Msa0125530:intron 25.0%
! TAAGTCAAGATATTCTTCTT+TGG + chr1_3:53992176-53992195 Msa0125530:intron 25.0%
! AAACATGAAATTCTTGAGAT+TGG + chr1_3:53992543-53992562 Msa0125530:five_prime_UTR 25.0%
!! AGTTCTTTTAACAACTTCAA+TGG - chr1_3:53992589-53992608 None:intergenic 25.0%
! ATTGAAGTTGTTAAAAGAAC+TGG + chr1_3:53992588-53992607 Msa0125530:five_prime_UTR 25.0%
! CTATCATATTTGTATGTCTT+TGG - chr1_3:53992921-53992940 None:intergenic 25.0%
! CAAAGACATACAAATATGAT+AGG + chr1_3:53992919-53992938 Msa0125530:intron 25.0%
! TGTACTATGTTGGAAATATA+TGG - chr1_3:53993000-53993019 None:intergenic 25.0%
! ATACAAGTTATGTACTATGT+TGG - chr1_3:53993010-53993029 None:intergenic 25.0%
! ATTGTGGAGAAAAAATTTCA+TGG + chr1_3:53993652-53993671 Msa0125530:CDS 25.0%
! ATGAAAAATTCATCAGAACA+TGG + chr1_3:53993808-53993827 Msa0125530:CDS 25.0%
! TGAAAAATTCATCAGAACAT+GGG + chr1_3:53993809-53993828 Msa0125530:CDS 25.0%
!! ATCACAATAGAGAAATTTTG+TGG - chr1_3:53994117-53994136 None:intergenic 25.0%
! CTTGAAAATCGTTAAATTAG+AGG + chr1_3:53994174-53994193 Msa0125530:three_prime_UTR 25.0%
! TTTTGTTCACTCACTTGTTT+TGG + chr1_3:53985342-53985361 Msa0125530:five_prime_UTR 30.0%
!! TTTGGTTTCAGCTTATGTTT+TGG + chr1_3:53985548-53985567 Msa0125530:five_prime_UTR 30.0%
GTATGAGAAAGAAGATTACT+TGG + chr1_3:53985596-53985615 Msa0125530:five_prime_UTR 30.0%
TCAATTGCTCATAATTCATG+AGG + chr1_3:53985732-53985751 Msa0125530:intron 30.0%
ACAACTTCACATTGTATCAT+AGG - chr1_3:53985985-53986004 None:intergenic 30.0%
ATTACAAAGGGCTTAATAAC+AGG - chr1_3:53986030-53986049 None:intergenic 30.0%
!!! TGTCTCTGATGGATTTTTTA+AGG - chr1_3:53986243-53986262 None:intergenic 30.0%
TAAGGTAAATAAGTGGTGTT+TGG + chr1_3:53986785-53986804 Msa0125530:intron 30.0%
AAGGTAAATAAGTGGTGTTT+GGG + chr1_3:53986786-53986805 Msa0125530:intron 30.0%
TGTCAACTGAATTATGTTCA+CGG + chr1_3:53986849-53986868 Msa0125530:intron 30.0%
!!! TTTGATTCGGTTTTCATTAG+TGG + chr1_3:53986920-53986939 Msa0125530:intron 30.0%
!! TTAAAAAACTACTTTTGGGC+TGG + chr1_3:53987034-53987053 Msa0125530:intron 30.0%
GAAAAGAACAGGAAGATATA+TGG + chr1_3:53987060-53987079 Msa0125530:intron 30.0%
!!! GGCACTTGTTTTATCTTATT+TGG - chr1_3:53987088-53987107 None:intergenic 30.0%
! AACAAGTGCCAACTATTTTA+AGG + chr1_3:53987098-53987117 Msa0125530:intron 30.0%
TATCTTTAATCCTTGAAAGG+AGG - chr1_3:53987239-53987258 None:intergenic 30.0%
GTTTGACCAATAATTGTTTC+AGG + chr1_3:53987655-53987674 Msa0125530:intron 30.0%
! TTTCAGGTAGAAATTGATTC+AGG + chr1_3:53987671-53987690 Msa0125530:intron 30.0%
!! TATGATGGATGATGATCAAA+TGG - chr1_3:53987766-53987785 None:intergenic 30.0%
! ACACTGTATTGGATATTTTC+AGG - chr1_3:53987912-53987931 None:intergenic 30.0%
TGCATTTGTATACCTTGAAA+TGG + chr1_3:53987992-53988011 Msa0125530:intron 30.0%
GAATTCCATCATATTAGGAT+AGG - chr1_3:53988108-53988127 None:intergenic 30.0%
AGTTCAAAGATGATGCTATA+AGG + chr1_3:53988297-53988316 Msa0125530:five_prime_UTR 30.0%
TCTCAATTATGCAATTCTCA+GGG - chr1_3:53988580-53988599 None:intergenic 30.0%
TTCTCAATTATGCAATTCTC+AGG - chr1_3:53988581-53988600 None:intergenic 30.0%
!! TATTTGTTTTCTTTGGAGAC+GGG + chr1_3:53988689-53988708 Msa0125530:intron 30.0%
CTTCAATTTGTACTCAACTA+TGG + chr1_3:53988773-53988792 Msa0125530:intron 30.0%
TGTATGTAGATTCCAATTTG+TGG + chr1_3:53989126-53989145 Msa0125530:intron 30.0%
! TTCCAATTTGTGGTTCTATT+TGG + chr1_3:53989136-53989155 Msa0125530:five_prime_UTR 30.0%
AAAGAAGAGCTTCAGAATAA+TGG + chr1_3:53989727-53989746 Msa0125530:five_prime_UTR 30.0%
AAGAAGAGCTTCAGAATAAT+GGG + chr1_3:53989728-53989747 Msa0125530:five_prime_UTR 30.0%
!!! AACTAATTTTGAGGTGGATT+TGG + chr1_3:53989762-53989781 Msa0125530:five_prime_UTR 30.0%
TTCAAGGGAAAAGAAAAATC+TGG + chr1_3:53990478-53990497 Msa0125530:five_prime_UTR 30.0%
!!! AAGAAAAATCTGGTTTTCTG+GGG + chr1_3:53990488-53990507 Msa0125530:five_prime_UTR 30.0%
! AGTAAATGTTTGTGCTTTTC+AGG + chr1_3:53990614-53990633 Msa0125530:intron 30.0%
TAAAGAACCAGTGGTAATAA+AGG - chr1_3:53990929-53990948 None:intergenic 30.0%
! TACTGATACATTTTACGTTG+AGG + chr1_3:53991172-53991191 Msa0125530:intron 30.0%
! TTCATAGTCCCCAATTTTAT+TGG + chr1_3:53991280-53991299 Msa0125530:five_prime_UTR 30.0%
CATACCTTCCAATAAAATTG+GGG - chr1_3:53991291-53991310 None:intergenic 30.0%
CTTCAGATTGAAACTGTATT+TGG + chr1_3:53991395-53991414 Msa0125530:intron 30.0%
!!! AGGTCTCTTGAATTTTTTCT+TGG + chr1_3:53991740-53991759 Msa0125530:five_prime_UTR 30.0%
ATTAAAAACACCAATGCACA+TGG - chr1_3:53991826-53991845 None:intergenic 30.0%
!! TGCATTGGTGTTTTTAATGT+AGG + chr1_3:53991828-53991847 Msa0125530:intron 30.0%
GGATGAATTTAAATCTCTGT+TGG - chr1_3:53991863-53991882 None:intergenic 30.0%
TAAAGACACATGAGAATAGT+TGG - chr1_3:53991964-53991983 None:intergenic 30.0%
AACTATTCTCATGTGTCTTT+AGG + chr1_3:53991963-53991982 Msa0125530:intron 30.0%
ACTATTCTCATGTGTCTTTA+GGG + chr1_3:53991964-53991983 Msa0125530:intron 30.0%
AAACCAGCCGTAAATAAAAT+CGG - chr1_3:53992001-53992020 None:intergenic 30.0%
! GAGTATTTTTCCTTGAAACA+TGG - chr1_3:53992048-53992067 None:intergenic 30.0%
! CATTTCTAGACATTATGATC+TGG + chr1_3:53992087-53992106 Msa0125530:five_prime_UTR 30.0%
AGAAGGAAAAATCAGAAACA+TGG - chr1_3:53992134-53992153 None:intergenic 30.0%
GGAGTATAAAAAATCACAGA+AGG - chr1_3:53992151-53992170 None:intergenic 30.0%
AGAATATCTTGACTTAGTGT+GGG - chr1_3:53992172-53992191 None:intergenic 30.0%
AAGAATATCTTGACTTAGTG+TGG - chr1_3:53992173-53992192 None:intergenic 30.0%
ATTGAAAAAGTGAGTGACTT+TGG + chr1_3:53992438-53992457 Msa0125530:intron 30.0%
!! TTCTAGCCTTGATTTATTTC+AGG - chr1_3:53992515-53992534 None:intergenic 30.0%
GAAAAAAGAGTTAAAGATGC+TGG + chr1_3:53992661-53992680 Msa0125530:exon 30.0%
ACACAGTAACAAGATTATAG+AGG - chr1_3:53992809-53992828 None:intergenic 30.0%
TTGTTGATGTTATCAAACCA+TGG + chr1_3:53992850-53992869 Msa0125530:intron 30.0%
GAATACATGGAAGAATTCTT+TGG + chr1_3:53993068-53993087 Msa0125530:CDS 30.0%
! ATCAAACTTTTGCTTTACCT+TGG + chr1_3:53993155-53993174 Msa0125530:intron 30.0%
TAGATTATAAGCTTTCTGCA+AGG + chr1_3:53993207-53993226 Msa0125530:intron 30.0%
CATTAAAGATACATGGTTGT+TGG + chr1_3:53993245-53993264 Msa0125530:intron 30.0%
TTTGTGCTAACTATTGAAGA+TGG + chr1_3:53993276-53993295 Msa0125530:intron 30.0%
TCTATAGTTCATATCAATCC+CGG + chr1_3:53993306-53993325 Msa0125530:intron 30.0%
! AAGGAATATATTTTTCCAGG+AGG + chr1_3:53993370-53993389 Msa0125530:CDS 30.0%
TATTAGATTGTACCATAGTC+TGG - chr1_3:53993443-53993462 None:intergenic 30.0%
GCGAATATTCAGTTAAGTAA+GGG - chr1_3:53993576-53993595 None:intergenic 30.0%
TGCGAATATTCAGTTAAGTA+AGG - chr1_3:53993577-53993596 None:intergenic 30.0%
ACTATCAAACACTAAGATTG+TGG + chr1_3:53993636-53993655 Msa0125530:CDS 30.0%
GGAGAAAAAATTTCATGGAA+AGG + chr1_3:53993657-53993676 Msa0125530:CDS 30.0%
! TTGTGTTCTCAGTGAAATTT+TGG + chr1_3:53993773-53993792 Msa0125530:intron 30.0%
!!! TATTTTGATTATTGTGGTGC+TGG + chr1_3:53993837-53993856 Msa0125530:CDS 30.0%
TTTCTTGTCTCAACTTGTCA+CGG + chr1_3:53985312-53985331 Msa0125530:five_prime_UTR 35.0%
AACAAGTGAGTGAACAAAAG+TGG - chr1_3:53985341-53985360 None:intergenic 35.0%
TAAAATGGACACGTTATTCG+TGG - chr1_3:53985379-53985398 None:intergenic 35.0%
CATTGTTGCACAAAAAGAGA+AGG + chr1_3:53985429-53985448 Msa0125530:five_prime_UTR 35.0%
TCTCATGAGAAGAAGAAGAT+AGG + chr1_3:53985486-53985505 Msa0125530:five_prime_UTR 35.0%
GCAAAAACTGTTAATGCTGA+TGG + chr1_3:53985627-53985646 Msa0125530:five_prime_UTR 35.0%
!! TAATGCTGATGGTGTTGATT+TGG + chr1_3:53985638-53985657 Msa0125530:five_prime_UTR 35.0%
TATTGAAGACCATGAAACCA+AGG - chr1_3:53985665-53985684 None:intergenic 35.0%
TTGGTTTCATGGTCTTCAAT+AGG + chr1_3:53985664-53985683 Msa0125530:five_prime_UTR 35.0%
TGGTTTCATGGTCTTCAATA+GGG + chr1_3:53985665-53985684 Msa0125530:five_prime_UTR 35.0%
! ATGCTTCACTTTCACTGTTT+TGG - chr1_3:53985871-53985890 None:intergenic 35.0%
!! ACAGTGAAAGTGAAGCATTT+TGG + chr1_3:53985873-53985892 Msa0125530:intron 35.0%
ATTAAGCCCTTTGTAATGTG+TGG + chr1_3:53986033-53986052 Msa0125530:intron 35.0%
! TTATTAGGTTTCTAGGGACA+CGG + chr1_3:53986502-53986521 Msa0125530:intron 35.0%
GTGTTAAACAATGCGATCAA+AGG - chr1_3:53986538-53986557 None:intergenic 35.0%
AATGTTAACCAATGTCCTTG+AGG + chr1_3:53986572-53986591 Msa0125530:intron 35.0%
! TTGTTTACTAACTAGCCTCA+AGG - chr1_3:53986590-53986609 None:intergenic 35.0%
TAATTTCTTAACTAGTGCCC+AGG + chr1_3:53986708-53986727 Msa0125530:intron 35.0%
AATTTCTTAACTAGTGCCCA+GGG + chr1_3:53986709-53986728 Msa0125530:intron 35.0%
AGGTAAATAAGTGGTGTTTG+GGG + chr1_3:53986787-53986806 Msa0125530:intron 35.0%
ATGCAAATGTAGCATTCCTT+TGG + chr1_3:53987370-53987389 Msa0125530:intron 35.0%
TCCTTTGGTTAACTAGATGA+TGG + chr1_3:53987385-53987404 Msa0125530:intron 35.0%
TTCCCACAACTTATAACAGT+TGG + chr1_3:53987555-53987574 Msa0125530:intron 35.0%
GTCCAACTGTTATAAGTTGT+GGG - chr1_3:53987560-53987579 None:intergenic 35.0%
AGTCCAACTGTTATAAGTTG+TGG - chr1_3:53987561-53987580 None:intergenic 35.0%
TTCTCTGAACAATTCGTCTT+TGG + chr1_3:53987694-53987713 Msa0125530:intron 35.0%
ATCAAGTAATTGAGCTCAAG+TGG - chr1_3:53987733-53987752 None:intergenic 35.0%
ATCCAATACAGTGTGCAATA+TGG + chr1_3:53987918-53987937 Msa0125530:intron 35.0%
!! TTTTCAAGATCAAGCCATGA+TGG - chr1_3:53987958-53987977 None:intergenic 35.0%
! TGTAACATGGACTATTGAAC+AGG + chr1_3:53988079-53988098 Msa0125530:intron 35.0%
! ATGGAATTCTTTGAGAGTCT+TGG + chr1_3:53988119-53988138 Msa0125530:five_prime_UTR 35.0%
TTGAGAAATGAGAGGAAATG+AGG - chr1_3:53988893-53988912 None:intergenic 35.0%
TAACTGCATTGAGAAATGAG+AGG - chr1_3:53988901-53988920 None:intergenic 35.0%
ACTCATTGTGATCCATATCT+GGG - chr1_3:53988945-53988964 None:intergenic 35.0%
ATATGGATCACAATGAGTCT+TGG + chr1_3:53988947-53988966 Msa0125530:five_prime_UTR 35.0%
TATGGATCACAATGAGTCTT+GGG + chr1_3:53988948-53988967 Msa0125530:five_prime_UTR 35.0%
GACCAAATAGAACCACAAAT+TGG - chr1_3:53989141-53989160 None:intergenic 35.0%
AACACTAACACACACATACA+CGG - chr1_3:53989583-53989602 None:intergenic 35.0%
TGCTTAAGCTGCAAGATATA+TGG - chr1_3:53989658-53989677 None:intergenic 35.0%
TTGGTTTCATCGTCTGAAAA+AGG + chr1_3:53989781-53989800 Msa0125530:five_prime_UTR 35.0%
! CTTTTCTTAAGGGAAAGGAA+AGG - chr1_3:53989831-53989850 None:intergenic 35.0%
CTTTCCTTTCCCTTAAGAAA+AGG + chr1_3:53989829-53989848 Msa0125530:intron 35.0%
! TCTTCCTTTTCTTAAGGGAA+AGG - chr1_3:53989836-53989855 None:intergenic 35.0%
!! AGTGTATGATGGATGCATAA+TGG + chr1_3:53989936-53989955 Msa0125530:five_prime_UTR 35.0%
!! ACCTGATGCTTTGAGATTAT+TGG + chr1_3:53989968-53989987 Msa0125530:five_prime_UTR 35.0%
!! CCTGATGCTTTGAGATTATT+GGG + chr1_3:53989969-53989988 Msa0125530:five_prime_UTR 35.0%
! GTGCTTTTCAATATGCATAC+AGG + chr1_3:53990027-53990046 Msa0125530:five_prime_UTR 35.0%
ACAAAGTTTGTGTCACATAC+TGG + chr1_3:53990214-53990233 Msa0125530:five_prime_UTR 35.0%
! ATACTGGCTAAACATTCTTC+AGG + chr1_3:53990230-53990249 Msa0125530:five_prime_UTR 35.0%
TTGCAGAATATTGAAGAAGC+AGG + chr1_3:53990333-53990352 Msa0125530:intron 35.0%
TCTAAATCCTGATCATGTAC+CGG + chr1_3:53990374-53990393 Msa0125530:five_prime_UTR 35.0%
TAGAGCTAGACCATATTCAA+GGG + chr1_3:53990463-53990482 Msa0125530:five_prime_UTR 35.0%
GAATAATCAGGAATGTACCT+TGG - chr1_3:53990518-53990537 None:intergenic 35.0%
!!! TGTTTGTGCTTTTCAGGTTA+TGG + chr1_3:53990620-53990639 Msa0125530:intron 35.0%
GGTTATGGATTTCATGAAGA+TGG + chr1_3:53990635-53990654 Msa0125530:intron 35.0%
! TTTTGCAAGGGAACTCTTTT+AGG - chr1_3:53990727-53990746 None:intergenic 35.0%
!!! TCTGTTTTGTTTCAACAGGT+TGG - chr1_3:53990755-53990774 None:intergenic 35.0%
!!! GTTGTCTGTTTTGTTTCAAC+AGG - chr1_3:53990759-53990778 None:intergenic 35.0%
AAGTGTAAGACTGAACTTTC+AGG + chr1_3:53990781-53990800 Msa0125530:intron 35.0%
!! AAGAAGGTACCATGTGTTTA+GGG - chr1_3:53990862-53990881 None:intergenic 35.0%
TACCTTCTTGGAAAGAACTT+GGG + chr1_3:53990873-53990892 Msa0125530:five_prime_UTR 35.0%
TCAGGAATCTAGTTACAAAG+AGG - chr1_3:53990903-53990922 None:intergenic 35.0%
! GTTACAAGACATTTTGTGTG+TGG - chr1_3:53991004-53991023 None:intergenic 35.0%
! AGGAACAATGTTTTCCTTTG+AGG + chr1_3:53991218-53991237 Msa0125530:five_prime_UTR 35.0%
! GGAACAATGTTTTCCTTTGA+GGG + chr1_3:53991219-53991238 Msa0125530:five_prime_UTR 35.0%
TGAACTCTCAAAACACTCTT+GGG - chr1_3:53991264-53991283 None:intergenic 35.0%
ATGAACTCTCAAAACACTCT+TGG - chr1_3:53991265-53991284 None:intergenic 35.0%
! TAGTCCCCAATTTTATTGGA+AGG + chr1_3:53991284-53991303 Msa0125530:five_prime_UTR 35.0%
GAACTAGGATCAATGAATGA+TGG + chr1_3:53991329-53991348 Msa0125530:intron 35.0%
! TTGTCACTTCTATAGCTAGT+AGG - chr1_3:53991355-53991374 None:intergenic 35.0%
TGACAATGAAACGTAGACAT+TGG - chr1_3:53991515-53991534 None:intergenic 35.0%
TTTGATGTTTGTGTCTGTGT+TGG + chr1_3:53991543-53991562 Msa0125530:intron 35.0%
ATCATCTGTACATGTTTGTC+AGG + chr1_3:53991644-53991663 Msa0125530:intron 35.0%
CATTAATGTATGCATCTGCT+AGG - chr1_3:53991692-53991711 None:intergenic 35.0%
CTAGCAGATGCATACATTAA+TGG + chr1_3:53991690-53991709 Msa0125530:five_prime_UTR 35.0%
!!! TTTTTTCTTGGTAAGCATGC+TGG + chr1_3:53991752-53991771 Msa0125530:intron 35.0%
TATGCAGTGTTTGTATCTTC+AGG + chr1_3:53991784-53991803 Msa0125530:intron 35.0%
! CTTACCTGCTCTTCAATTTT+GGG - chr1_3:53991888-53991907 None:intergenic 35.0%
! ACTTACCTGCTCTTCAATTT+TGG - chr1_3:53991889-53991908 None:intergenic 35.0%
ATGAATTGAAGCCTACACTA+AGG + chr1_3:53991916-53991935 Msa0125530:intron 35.0%
CTATTCTCATGTGTCTTTAG+GGG + chr1_3:53991965-53991984 Msa0125530:intron 35.0%
!!! GTGGACACCGATTTTATTTA+CGG + chr1_3:53991991-53992010 Msa0125530:five_prime_UTR 35.0%
AAGGAAAAATACTCTCACAC+AGG + chr1_3:53992054-53992073 Msa0125530:five_prime_UTR 35.0%
! TGAACTCTTTGCACTTTTCT+TGG + chr1_3:53992213-53992232 Msa0125530:five_prime_UTR 35.0%
GAAATTCTTGAGATTGGATG+TGG + chr1_3:53992549-53992568 Msa0125530:five_prime_UTR 35.0%
TGTTATCAAACCATGGTTAC+AGG + chr1_3:53992857-53992876 Msa0125530:intron 35.0%
TTGATATTGTCCTGTAACCA+TGG - chr1_3:53992870-53992889 None:intergenic 35.0%
TGTATGTCTTTGGCAATTGT+CGG - chr1_3:53992911-53992930 None:intergenic 35.0%
AGTGAAATGATAGAAGCTGT+TGG + chr1_3:53993041-53993060 Msa0125530:intron 35.0%
TGGTTGTTGTGAATCAGTAA+TGG + chr1_3:53993088-53993107 Msa0125530:CDS 35.0%
GAATCAGTAATGGCAAATGA+TGG + chr1_3:53993098-53993117 Msa0125530:CDS 35.0%
ATGAGCGTTATGATGAGTAT+AGG + chr1_3:53993329-53993348 Msa0125530:CDS 35.0%
!! GCGCAGTTCTGATTTTATAA+AGG + chr1_3:53993351-53993370 Msa0125530:CDS 35.0%
AAAATTTCATGGAAAGGCAG+AGG + chr1_3:53993663-53993682 Msa0125530:CDS 35.0%
CAACAGTGATATGTTTCATG+TGG + chr1_3:53993952-53993971 Msa0125530:intron 35.0%
ATATGTTTCATGTGGCATGT+AGG + chr1_3:53993960-53993979 Msa0125530:intron 35.0%
GTATTCTGCTAGAATGAATG+AGG - chr1_3:53994055-53994074 None:intergenic 35.0%
!!! TGTTCACTCACTTGTTTTGG+AGG + chr1_3:53985345-53985364 Msa0125530:five_prime_UTR 40.0%
GATATGAGAGTTGCAGTAGT+TGG + chr1_3:53985511-53985530 Msa0125530:five_prime_UTR 40.0%
!!! TCAGCTTATGTTTTGGCCAA+AGG + chr1_3:53985555-53985574 Msa0125530:five_prime_UTR 40.0%
GAGAAAGAAGATTACTTGGG+AGG + chr1_3:53985600-53985619 Msa0125530:five_prime_UTR 40.0%
! TGATTTGGACCTTGGTTTCA+TGG + chr1_3:53985653-53985672 Msa0125530:five_prime_UTR 40.0%
CCAGTACCACACATTACAAA+GGG - chr1_3:53986042-53986061 None:intergenic 40.0%
TCCAGTACCACACATTACAA+AGG - chr1_3:53986043-53986062 None:intergenic 40.0%
GTGTCCCTAGAAACCTAATA+AGG - chr1_3:53986503-53986522 None:intergenic 40.0%
ATTTCTTAACTAGTGCCCAG+GGG + chr1_3:53986710-53986729 Msa0125530:intron 40.0%
AAAAATTAACTGGTGCCCCT+GGG - chr1_3:53986728-53986747 None:intergenic 40.0%
AAAAAATTAACTGGTGCCCC+TGG - chr1_3:53986729-53986748 None:intergenic 40.0%
! TGTTCACGGAACTTGTTTGA+CGG + chr1_3:53986863-53986882 Msa0125530:intron 40.0%
ATGAAGTCATCCTCCTTTCA+AGG + chr1_3:53987226-53987245 Msa0125530:intron 40.0%
TTTGCATGAAGGAACTGTCA+TGG - chr1_3:53987357-53987376 None:intergenic 40.0%
GGAATGCTACATTTGCATGA+AGG - chr1_3:53987368-53987387 None:intergenic 40.0%
GCCATCATCTAGTTAACCAA+AGG - chr1_3:53987389-53987408 None:intergenic 40.0%
TCTGAACAATTCGTCTTTGG+TGG + chr1_3:53987697-53987716 Msa0125530:intron 40.0%
TGCCATATTGCACACTGTAT+TGG - chr1_3:53987923-53987942 None:intergenic 40.0%
GGTGACCTATCCTAATATGA+TGG + chr1_3:53988100-53988119 Msa0125530:intron 40.0%
TGAGAGTCTTGGAGTTGAAA+TGG + chr1_3:53988130-53988149 Msa0125530:five_prime_UTR 40.0%
! TTTTCTGTCAGCCTAGACAA+AGG + chr1_3:53988170-53988189 Msa0125530:five_prime_UTR 40.0%
ACGGATACCAATTGTTTCAC+AGG - chr1_3:53988474-53988493 None:intergenic 40.0%
! CAATTGGTATCCGTTGACTA+TGG + chr1_3:53988480-53988499 Msa0125530:intron 40.0%
GGAATATGAGCCATAGTCAA+CGG - chr1_3:53988493-53988512 None:intergenic 40.0%
GAGTGTATGTCCACTTATCA+GGG - chr1_3:53988514-53988533 None:intergenic 40.0%
TGTACTCAACTATGGAAAGC+TGG + chr1_3:53988781-53988800 Msa0125530:intron 40.0%
CTTGACAATGTAGTGTAGAG+CGG + chr1_3:53988825-53988844 Msa0125530:intron 40.0%
GCTTGAGAATAACCCAGATA+TGG + chr1_3:53988930-53988949 Msa0125530:five_prime_UTR 40.0%
GACTCATTGTGATCCATATC+TGG - chr1_3:53988946-53988965 None:intergenic 40.0%
ATGGATCACAATGAGTCTTG+GGG + chr1_3:53988949-53988968 Msa0125530:five_prime_UTR 40.0%
TTTGTCCTAGTACCTGAAGT+AGG - chr1_3:53989230-53989249 None:intergenic 40.0%
TGTGTGTGTTAGTGTTTCGT+AGG + chr1_3:53989587-53989606 Msa0125530:intron 40.0%
AACCATTCCCAAAGTGATCT+AGG - chr1_3:53989614-53989633 None:intergenic 40.0%
!! TTTGCAGGATGTGTCGTTTA+CGG + chr1_3:53989895-53989914 Msa0125530:intron 40.0%
!! GGTTCTGAAGAAGTGTATGA+TGG + chr1_3:53989925-53989944 Msa0125530:five_prime_UTR 40.0%
! CCCAATAATCTCAAAGCATC+AGG - chr1_3:53989972-53989991 None:intergenic 40.0%
!! TGGAGTGCTTGGAATTTTCT+TGG + chr1_3:53990180-53990199 Msa0125530:five_prime_UTR 40.0%
TGGCTAAACATTCTTCAGGT+TGG + chr1_3:53990234-53990253 Msa0125530:intron 40.0%
ACATTGCTTAAGTGGTCAAC+TGG + chr1_3:53990402-53990421 Msa0125530:five_prime_UTR 40.0%
! CTCTACTGAAGCTTTGTATG+CGG - chr1_3:53990448-53990467 None:intergenic 40.0%
GTAGAGCTAGACCATATTCA+AGG + chr1_3:53990462-53990481 Msa0125530:five_prime_UTR 40.0%
CATAATTGTTGGGTCACGAA+TGG + chr1_3:53990563-53990582 Msa0125530:intron 40.0%
CTTAGAATGTGAGATCTCTC+CGG - chr1_3:53990596-53990615 None:intergenic 40.0%
!!! GTTTTGTTTCAACAGGTTGG+TGG - chr1_3:53990752-53990771 None:intergenic 40.0%
ATTGCAGCTCATGGAATTCT+TGG + chr1_3:53990812-53990831 Msa0125530:five_prime_UTR 40.0%
!! CAAGAAGGTACCATGTGTTT+AGG - chr1_3:53990863-53990882 None:intergenic 40.0%
CTAAACACATGGTACCTTCT+TGG + chr1_3:53990861-53990880 Msa0125530:five_prime_UTR 40.0%
GTACCTTCTTGGAAAGAACT+TGG + chr1_3:53990872-53990891 Msa0125530:five_prime_UTR 40.0%
CAGTGGTAATAAAGGAACTC+AGG - chr1_3:53990921-53990940 None:intergenic 40.0%
CTGAGTTCCTTTATTACCAC+TGG + chr1_3:53990919-53990938 Msa0125530:five_prime_UTR 40.0%
AACTCACGTTAAAGAACCAG+TGG - chr1_3:53990938-53990957 None:intergenic 40.0%
! GTTGAGGTGTTACAGCTTAT+TGG + chr1_3:53991188-53991207 Msa0125530:intron 40.0%
TGTTACAGCTTATTGGAGGA+AGG + chr1_3:53991195-53991214 Msa0125530:intron 40.0%
!! ATGTTTTCCTTTGAGGGAAC+TGG + chr1_3:53991225-53991244 Msa0125530:five_prime_UTR 40.0%
!! TGTTTTCCTTTGAGGGAACT+GGG + chr1_3:53991226-53991245 Msa0125530:five_prime_UTR 40.0%
AACTCTCAAAACACTCTTGG+GGG - chr1_3:53991262-53991281 None:intergenic 40.0%
GAACTCTCAAAACACTCTTG+GGG - chr1_3:53991263-53991282 None:intergenic 40.0%
CTCTTTACTTCCATGTGCAT+TGG + chr1_3:53991813-53991832 Msa0125530:intron 40.0%
!!! ACACCGATTTTATTTACGGC+TGG + chr1_3:53991995-53992014 Msa0125530:five_prime_UTR 40.0%
GACATCTGCAAAGTTCTTCA+TGG + chr1_3:53992021-53992040 Msa0125530:five_prime_UTR 40.0%
TCTTCATGGACCATGTTTCA+AGG + chr1_3:53992035-53992054 Msa0125530:five_prime_UTR 40.0%
CATACTCATGTGCAGTTTCA+AGG + chr1_3:53992248-53992267 Msa0125530:five_prime_UTR 40.0%
TTCTTGAGATTGGATGTGGA+TGG + chr1_3:53992553-53992572 Msa0125530:five_prime_UTR 40.0%
TCTTGAGATTGGATGTGGAT+GGG + chr1_3:53992554-53992573 Msa0125530:five_prime_UTR 40.0%
AGAACTGGTTGCAAATACAC+CGG + chr1_3:53992603-53992622 Msa0125530:five_prime_UTR 40.0%
TCTCTCTGACAAAGTGATAC+CGG - chr1_3:53992625-53992644 None:intergenic 40.0%
! GCTTGTTGATCAATACCTGA+AGG - chr1_3:53992687-53992706 None:intergenic 40.0%
AGCTGTTGGACATGAATACA+TGG + chr1_3:53993055-53993074 Msa0125530:CDS 40.0%
!! TGATGGACTTCTTGTTCTTC+AGG + chr1_3:53993115-53993134 Msa0125530:CDS 40.0%
TACTCATCATAACGCTCATC+CGG - chr1_3:53993328-53993347 None:intergenic 40.0%
GATGTGATCCTACTTAGAGA+GGG - chr1_3:53993403-53993422 None:intergenic 40.0%
TGATGTGATCCTACTTAGAG+AGG - chr1_3:53993404-53993423 None:intergenic 40.0%
AAGTAGGATCACATCATCCA+TGG + chr1_3:53993408-53993427 Msa0125530:CDS 40.0%
ATTGTACCATAGTCTGGATG+CGG - chr1_3:53993437-53993456 None:intergenic 40.0%
!!! CTCAGTGAAATTTTGGCTCT+AGG + chr1_3:53993780-53993799 Msa0125530:intron 40.0%
!! GTTTTAAGTCACGCACACTT+GGG + chr1_3:53993859-53993878 Msa0125530:CDS 40.0%
TCAGTGATCCATACAAAAGC+TGG + chr1_3:53994016-53994035 Msa0125530:CDS 40.0%
ATGAATGAGGCTTGTGCTTA+GGG - chr1_3:53994042-53994061 None:intergenic 40.0%
AATGAATGAGGCTTGTGCTT+AGG - chr1_3:53994043-53994062 None:intergenic 40.0%
TAGTTGTTTGCCACTCCAAA+AGG - chr1_3:53994211-53994230 None:intergenic 40.0%
! AGAGTTGCAGTAGTTGGTGT+GGG + chr1_3:53985517-53985536 Msa0125530:five_prime_UTR 45.0%
! AGTAGTTGGTGTGGGATTAG+TGG + chr1_3:53985525-53985544 Msa0125530:five_prime_UTR 45.0%
! TTGGTGTGGGATTAGTGGTT+TGG + chr1_3:53985530-53985549 Msa0125530:five_prime_UTR 45.0%
!!! GCTTATGTTTTGGCCAAAGG+TGG + chr1_3:53985558-53985577 Msa0125530:five_prime_UTR 45.0%
!! AACCACATTGACTCCACCTT+TGG - chr1_3:53985574-53985593 None:intergenic 45.0%
!! GATGGTGTTGATTTGGACCT+TGG + chr1_3:53985645-53985664 Msa0125530:five_prime_UTR 45.0%
CCCTTTGTAATGTGTGGTAC+TGG + chr1_3:53986039-53986058 Msa0125530:intron 45.0%
ACAACTTCGAGTGTCTCTGA+TGG - chr1_3:53986254-53986273 None:intergenic 45.0%
! CTAACTAGCCTCAAGGACAT+TGG - chr1_3:53986583-53986602 None:intergenic 45.0%
! TGGGCTGGAATGAAAAGAAC+AGG + chr1_3:53987049-53987068 Msa0125530:intron 45.0%
! CCACATGCCAACTTTTGTTG+TGG - chr1_3:53987313-53987332 None:intergenic 45.0%
CCACAACAAAAGTTGGCATG+TGG + chr1_3:53987310-53987329 Msa0125530:intron 45.0%
AAAAGAGTGACGAGCCTACA+TGG - chr1_3:53987507-53987526 None:intergenic 45.0%
GGCTCATATTCCCTGATAAG+TGG + chr1_3:53988501-53988520 Msa0125530:intron 45.0%
CGAGTGTATGTCCACTTATC+AGG - chr1_3:53988515-53988534 None:intergenic 45.0%
CGCTCTACACTACATTGTCA+AGG - chr1_3:53988827-53988846 None:intergenic 45.0%
TCTTGGGGCAATTCCAATCA+AGG + chr1_3:53988964-53988983 Msa0125530:five_prime_UTR 45.0%
CTTGGGGCAATTCCAATCAA+GGG + chr1_3:53988965-53988984 Msa0125530:five_prime_UTR 45.0%
TTGGGGCAATTCCAATCAAG+GGG + chr1_3:53988966-53988985 Msa0125530:five_prime_UTR 45.0%
TTGTCTGAGAACCCCTTGAT+TGG - chr1_3:53988980-53988999 None:intergenic 45.0%
AATCAAGGGGTTCTCAGACA+AGG + chr1_3:53988979-53988998 Msa0125530:five_prime_UTR 45.0%
ATCAAGGGGTTCTCAGACAA+GGG + chr1_3:53988980-53988999 Msa0125530:five_prime_UTR 45.0%
ATTTGGTCGTGCTCTTCTGA+AGG + chr1_3:53989153-53989172 Msa0125530:five_prime_UTR 45.0%
TCGTAATCACCACCTACTTC+AGG + chr1_3:53989215-53989234 Msa0125530:five_prime_UTR 45.0%
CATCTGACAGTTAGCCATTG+CGG - chr1_3:53989351-53989370 None:intergenic 45.0%
ATCCGGTGTCTGACAAGTAT+CGG + chr1_3:53989466-53989485 Msa0125530:intron 45.0%
TCGTAGGTCCTAGATCACTT+TGG + chr1_3:53989603-53989622 Msa0125530:intron 45.0%
CGTAGGTCCTAGATCACTTT+GGG + chr1_3:53989604-53989623 Msa0125530:intron 45.0%
! GTCCTAGATCACTTTGGGAA+TGG + chr1_3:53989609-53989628 Msa0125530:intron 45.0%
!! TGTGTCGTTTACGGCAAAGA+TGG + chr1_3:53989904-53989923 Msa0125530:five_prime_UTR 45.0%
CTTTGTATGCGGCAACTGAT+GGG - chr1_3:53990437-53990456 None:intergenic 45.0%
AATGTGAGATCTCTCCGGTT+AGG - chr1_3:53990591-53990610 None:intergenic 45.0%
!!! AGGTTGGTGGCATTTTGCAA+GGG - chr1_3:53990739-53990758 None:intergenic 45.0%
GTAAGACTGAACTTTCAGGC+TGG + chr1_3:53990785-53990804 Msa0125530:intron 45.0%
!! TGGAAAGTGTTGTACCCTTC+AGG + chr1_3:53990832-53990851 Msa0125530:five_prime_UTR 45.0%
! AGGTACCATGTGTTTAGGGT+TGG - chr1_3:53990858-53990877 None:intergenic 45.0%
TGCCCAAGTTCTTTCCAAGA+AGG - chr1_3:53990878-53990897 None:intergenic 45.0%
! GAGGTGTTACAGCTTATTGG+AGG + chr1_3:53991191-53991210 Msa0125530:intron 45.0%
TACAGCTTATTGGAGGAAGG+AGG + chr1_3:53991198-53991217 Msa0125530:intron 45.0%
! CTTTTTCCCAGTTCCCTCAA+AGG - chr1_3:53991235-53991254 None:intergenic 45.0%
TGTTTGTCAGGTCATGACAC+AGG + chr1_3:53991656-53991675 Msa0125530:intron 45.0%
GTCATGACACAGGCAGATTT+AGG + chr1_3:53991666-53991685 Msa0125530:five_prime_UTR 45.0%
!! CCTGCTCTTCAATTTTGGGT+TGG - chr1_3:53991884-53991903 None:intergenic 45.0%
CCAACCCAAAATTGAAGAGC+AGG + chr1_3:53991881-53991900 Msa0125530:five_prime_UTR 45.0%
! TCTCATGTGTCTTTAGGGGT+TGG + chr1_3:53991969-53991988 Msa0125530:intron 45.0%
ATACTCTCACACAGGCTAGA+AGG + chr1_3:53992062-53992081 Msa0125530:five_prime_UTR 45.0%
CTTGAGATTGGATGTGGATG+GGG + chr1_3:53992555-53992574 Msa0125530:five_prime_UTR 45.0%
!! AGTTAAAGATGCTGGCCTTC+AGG + chr1_3:53992669-53992688 Msa0125530:exon 45.0%
ACTCATCATAACGCTCATCC+GGG - chr1_3:53993327-53993346 None:intergenic 45.0%
TGATCCTACTTAGAGAGGGT+AGG - chr1_3:53993399-53993418 None:intergenic 45.0%
GTCGAGCACGTTGAAAACTT+CGG + chr1_3:53993605-53993624 Msa0125530:CDS 45.0%
!!! GGTTTTAAGTCACGCACACT+TGG + chr1_3:53993858-53993877 Msa0125530:CDS 45.0%
ACGCACACTTGGGAATTATC+AGG + chr1_3:53993869-53993888 Msa0125530:CDS 45.0%
TGTTTCATGTGGCATGTAGG+TGG + chr1_3:53993963-53993982 Msa0125530:intron 45.0%
TGAATGCAGTAACGTTCCCA+GGG - chr1_3:53993999-53994018 None:intergenic 45.0%
! GAGGAGCTGAATTGTCCTTT+TGG + chr1_3:53994193-53994212 Msa0125530:three_prime_UTR 45.0%
!! GCTGAATTGTCCTTTTGGAG+TGG + chr1_3:53994198-53994217 Msa0125530:three_prime_UTR 45.0%
!!! TTATAAATAATTTCTTATTT+TGG - chr1_3:53986152-53986171 None:intergenic 5.0%
!! TTAAAAAAAAAAAAATTAAC+TGG - chr1_3:53986738-53986757 None:intergenic 5.0%
!! ATAATAAAATAAAATTAGTT+GGG + chr1_3:53987790-53987809 Msa0125530:intron 5.0%
! GAGAGTTGCAGTAGTTGGTG+TGG + chr1_3:53985516-53985535 Msa0125530:five_prime_UTR 50.0%
CATGAAGGAACTGTCATGGC+AGG - chr1_3:53987353-53987372 None:intergenic 50.0%
TGTGAATGGGGCAGCAGAAA+CGG + chr1_3:53988200-53988219 Msa0125530:five_prime_UTR 50.0%
TCTCTTCTGTGCGAACAAGC+CGG - chr1_3:53988231-53988250 None:intergenic 50.0%
GGACATACACTCGAACGTAG+CGG + chr1_3:53988522-53988541 Msa0125530:intron 50.0%
TCAAGGGGTTCTCAGACAAG+GGG + chr1_3:53988981-53989000 Msa0125530:five_prime_UTR 50.0%
CACCACCTACTTCAGGTACT+AGG + chr1_3:53989222-53989241 Msa0125530:intron 50.0%
GTCCTAGTACCTGAAGTAGG+TGG - chr1_3:53989227-53989246 None:intergenic 50.0%
CGCAATGGCTAACTGTCAGA+TGG + chr1_3:53989349-53989368 Msa0125530:five_prime_UTR 50.0%
CACCGATACTTGTCAGACAC+CGG - chr1_3:53989471-53989490 None:intergenic 50.0%
GCTTTGTATGCGGCAACTGA+TGG - chr1_3:53990438-53990457 None:intergenic 50.0%
!!! TGGTTTTCTGGGGCATACCA+AGG + chr1_3:53990498-53990517 Msa0125530:five_prime_UTR 50.0%
!!! CAGGTTGGTGGCATTTTGCA+AGG - chr1_3:53990740-53990759 None:intergenic 50.0%
!! GTGTTTAGGGTTGGCCTGAA+GGG - chr1_3:53990849-53990868 None:intergenic 50.0%
!! TGTGTTTAGGGTTGGCCTGA+AGG - chr1_3:53990850-53990869 None:intergenic 50.0%
TCAGGCCAACCCTAAACACA+TGG + chr1_3:53990850-53990869 Msa0125530:five_prime_UTR 50.0%
! CATGTGTCTTTAGGGGTTGG+TGG + chr1_3:53991972-53991991 Msa0125530:intron 50.0%
GTTGCCTACCCTCTCTAAGT+AGG + chr1_3:53993392-53993411 Msa0125530:CDS 50.0%
CTGAATGCAGTAACGTTCCC+AGG - chr1_3:53994000-53994019 None:intergenic 50.0%
! GCTTAGGGCCAGCTTTTGTA+TGG - chr1_3:53994027-53994046 None:intergenic 50.0%
GGCCAAAGGTGGAGTCAATG+TGG + chr1_3:53985569-53985588 Msa0125530:five_prime_UTR 55.0%
AACTGTCATGGCAGGACCAC+TGG - chr1_3:53987345-53987364 None:intergenic 55.0%
GTCAGCCTAGACAAAGGTCG+CGG + chr1_3:53988176-53988195 Msa0125530:five_prime_UTR 55.0%
ACAAAGGTCGCGGCTGTGAA+TGG + chr1_3:53988186-53988205 Msa0125530:five_prime_UTR 55.0%
CAAAGGTCGCGGCTGTGAAT+GGG + chr1_3:53988187-53988206 Msa0125530:five_prime_UTR 55.0%
AAAGGTCGCGGCTGTGAATG+GGG + chr1_3:53988188-53988207 Msa0125530:five_prime_UTR 55.0%
GGCAGCAGAAACGGTTTGTC+CGG + chr1_3:53988209-53988228 Msa0125530:five_prime_UTR 55.0%
TGCTCCTCTCTGCAGCTCTT+TGG + chr1_3:53989321-53989340 Msa0125530:intron 55.0%
TCTGCCAAAGAGCTGCAGAG+AGG - chr1_3:53989328-53989347 None:intergenic 55.0%
AGCTCTTTGGCAGACCGCAA+TGG + chr1_3:53989334-53989353 Msa0125530:intron 55.0%
! CTCCATGCTGCTGGGTTTTG+CGG - chr1_3:53990165-53990184 None:intergenic 55.0%
TCCAAGCACTCCATGCTGCT+GGG - chr1_3:53990173-53990192 None:intergenic 55.0%
TTCCAAGCACTCCATGCTGC+TGG - chr1_3:53990174-53990193 None:intergenic 55.0%
TAAGTGGTCAACTGGCCACC+CGG + chr1_3:53990410-53990429 Msa0125530:five_prime_UTR 55.0%
TATGCGGCAACTGATGGGAC+CGG - chr1_3:53990432-53990451 None:intergenic 55.0%
GGTCACGAATGGAGCCTAAC+CGG + chr1_3:53990574-53990593 Msa0125530:intron 55.0%
GCTGGCATGATTGCAGCTCA+TGG + chr1_3:53990803-53990822 Msa0125530:five_prime_UTR 55.0%
TAGTCTGGATGCGGATGCCA+TGG - chr1_3:53993428-53993447 None:intergenic 55.0%
TGGCATCCGCATCCAGACTA+TGG + chr1_3:53993428-53993447 Msa0125530:CDS 55.0%
! TAGGTGGTTTTCTCACGCCC+TGG + chr1_3:53993979-53993998 Msa0125530:intron 55.0%
! AGGTGGTTTTCTCACGCCCT+GGG + chr1_3:53993980-53993999 Msa0125530:intron 55.0%
ATGGCAGGACCACTGGTGGA+GGG - chr1_3:53987338-53987357 None:intergenic 60.0%
TGTCATGGCAGGACCACTGG+TGG - chr1_3:53987342-53987361 None:intergenic 60.0%
CACAGCCGCGACCTTTGTCT+AGG - chr1_3:53988184-53988203 None:intergenic 60.0%
! ACACTCGAACGTAGCGGAGC+AGG + chr1_3:53988528-53988547 Msa0125530:intron 60.0%
! CACTCGAACGTAGCGGAGCA+GGG + chr1_3:53988529-53988548 Msa0125530:intron 60.0%
TGCCGCAAAACCCAGCAGCA+TGG + chr1_3:53990160-53990179 Msa0125530:five_prime_UTR 60.0%
! ACCCAGCAGCATGGAGTGCT+TGG + chr1_3:53990169-53990188 Msa0125530:five_prime_UTR 60.0%
ATGCGGCAACTGATGGGACC+GGG - chr1_3:53990431-53990450 None:intergenic 60.0%
AGAGAGGGTAGGCAACCTCC+TGG - chr1_3:53993388-53993407 None:intergenic 60.0%
CATGTGGACCCCTCCACCAG+TGG + chr1_3:53987326-53987345 Msa0125530:intron 65.0%
TGGCAGGACCACTGGTGGAG+GGG - chr1_3:53987337-53987356 None:intergenic 65.0%
CATGGCAGGACCACTGGTGG+AGG - chr1_3:53987339-53987358 None:intergenic 65.0%
! CGAACGTAGCGGAGCAGGGT+TGG + chr1_3:53988533-53988552 Msa0125530:intron 65.0%
CGGCAACTGATGGGACCGGG+TGG - chr1_3:53990428-53990447 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53985300 53994290 53985300 ID=Msa0125530;Name=Msa0125530
chr1_3 mRNA 53985300 53994290 53985300 ID=Msa0125530-mRNA-1;Parent=Msa0125530;Name=Msa0125530-mRNA-1;_AED=0.20;_eAED=0.20;_QI=2238|0.95|1|1|0.63|0.73|23|246|164
chr1_3 exon 53985300 53985686 53985300 ID=Msa0125530-mRNA-1:exon:16628;Parent=Msa0125530-mRNA-1
chr1_3 exon 53988101 53988318 53988101 ID=Msa0125530-mRNA-1:exon:16629;Parent=Msa0125530-mRNA-1
chr1_3 exon 53988918 53989033 53988918 ID=Msa0125530-mRNA-1:exon:16630;Parent=Msa0125530-mRNA-1
chr1_3 exon 53989135 53989236 53989135 ID=Msa0125530-mRNA-1:exon:16631;Parent=Msa0125530-mRNA-1
chr1_3 exon 53989336 53989395 53989336 ID=Msa0125530-mRNA-1:exon:16632;Parent=Msa0125530-mRNA-1
chr1_3 exon 53989724 53989802 53989724 ID=Msa0125530-mRNA-1:exon:16633;Parent=Msa0125530-mRNA-1
chr1_3 exon 53989902 53990048 53989902 ID=Msa0125530-mRNA-1:exon:16634;Parent=Msa0125530-mRNA-1
chr1_3 exon 53990128 53990251 53990128 ID=Msa0125530-mRNA-1:exon:16635;Parent=Msa0125530-mRNA-1
chr1_3 exon 53990339 53990519 53990339 ID=Msa0125530-mRNA-1:exon:16636;Parent=Msa0125530-mRNA-1
chr1_3 exon 53990636 53990664 53990636 ID=Msa0125530-mRNA-1:exon:16637;Parent=Msa0125530-mRNA-1
chr1_3 exon 53990803 53990950 53990803 ID=Msa0125530-mRNA-1:exon:16638;Parent=Msa0125530-mRNA-1
chr1_3 exon 53991203 53991305 53991203 ID=Msa0125530-mRNA-1:exon:16639;Parent=Msa0125530-mRNA-1
chr1_3 exon 53991666 53991761 53991666 ID=Msa0125530-mRNA-1:exon:16640;Parent=Msa0125530-mRNA-1
chr1_3 exon 53991850 53991902 53991850 ID=Msa0125530-mRNA-1:exon:16641;Parent=Msa0125530-mRNA-1
chr1_3 exon 53991985 53992108 53991985 ID=Msa0125530-mRNA-1:exon:16642;Parent=Msa0125530-mRNA-1
chr1_3 exon 53992208 53992269 53992208 ID=Msa0125530-mRNA-1:exon:16643;Parent=Msa0125530-mRNA-1
chr1_3 exon 53992387 53992446 53992387 ID=Msa0125530-mRNA-1:exon:16644;Parent=Msa0125530-mRNA-1
chr1_3 exon 53992528 53992690 53992528 ID=Msa0125530-mRNA-1:exon:16645;Parent=Msa0125530-mRNA-1
chr1_3 exon 53993043 53993136 53993043 ID=Msa0125530-mRNA-1:exon:16646;Parent=Msa0125530-mRNA-1
chr1_3 exon 53993313 53993449 53993313 ID=Msa0125530-mRNA-1:exon:16647;Parent=Msa0125530-mRNA-1
chr1_3 exon 53993604 53993684 53993604 ID=Msa0125530-mRNA-1:exon:16648;Parent=Msa0125530-mRNA-1
chr1_3 exon 53993785 53993890 53993785 ID=Msa0125530-mRNA-1:exon:16649;Parent=Msa0125530-mRNA-1
chr1_3 exon 53993982 53994290 53993982 ID=Msa0125530-mRNA-1:exon:16650;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53985300 53985686 53985300 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53988101 53988318 53988101 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53988918 53989033 53988918 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53989135 53989236 53989135 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53989336 53989395 53989336 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53989724 53989802 53989724 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53989902 53990048 53989902 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53990128 53990251 53990128 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53990339 53990519 53990339 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53990636 53990664 53990636 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53990803 53990950 53990803 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53991203 53991305 53991203 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53991666 53991761 53991666 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53991850 53991902 53991850 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53991985 53992108 53991985 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53992208 53992269 53992208 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53992387 53992446 53992387 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 five_prime_UTR 53992528 53992676 53992528 ID=Msa0125530-mRNA-1:five_prime_utr;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53992677 53992690 53992677 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53993043 53993136 53993043 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53993313 53993449 53993313 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53993604 53993684 53993604 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53993785 53993890 53993785 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 CDS 53993982 53994044 53993982 ID=Msa0125530-mRNA-1:cds;Parent=Msa0125530-mRNA-1
chr1_3 three_prime_UTR 53994045 53994290 53994045 ID=Msa0125530-mRNA-1:three_prime_utr;Parent=Msa0125530-mRNA-1
Gene Sequence

>Msa0125530

ATGCTGGCCTTCAGTGAAATGATAGAAGCTGTTGGACATGAATACATGGAAGAATTCTTTGGTTGTTGTGAATCAGTAATGGCAAATGATGGACTTCTTGTTCTTCAGTTCATATCAATCCCGGATGAGCGTTATGATGAGTATAGGCGCAGTTCTGATTTTATAAAGGAATATATTTTTCCAGGAGGTTGCCTACCCTCTCTAAGTAGGATCACATCATCCATGGCATCCGCATCCAGACTATGCGTCGAGCACGTTGAAAACTTCGGAATTCATTACTATCAAACACTAAGATTGTGGAGAAAAAATTTCATGGAAAGGCAGAGTGAAATTTTGGCTCTAGGATTTAATGAAAAATTCATCAGAACATGGGAATACTATTTTGATTATTGTGGTGCTGGTTTTAAGTCACGCACACTTGGGAATTATCAGGTGGTTTTCTCACGCCCTGGGAACGTTACTGCATTCAGTGATCCATACAAAAGCTGGCCCTAA
Protein sequence

>Msa0125530

MLAFSEMIEAVGHEYMEEFFGCCESVMANDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRITSSMASASRLCVEHVENFGIHYYQTLRLWRKNFMERQSEILALGFNEKFIRTWEYYFDYCGAGFKSRTLGNYQVVFSRPGNVTAFSDPYKSWP*