AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389580 MtrunA17_Chr1g0171571 94.561 239 5 1 1 231 400 638 2.00e-161 463
Msa0389580 MtrunA17_Chr1g0150451 40.000 240 123 7 1 231 90 317 5.05e-42 147
Msa0389580 MtrunA17_Chr3g0136711 40.724 221 110 7 20 231 66 274 9.03e-41 142
Msa0389580 MtrunA17_Chr1g0212961 37.557 221 113 7 20 231 127 331 3.21e-35 129
Msa0389580 MtrunA17_Chr3g0138281 35.776 232 115 8 20 231 122 339 1.68e-34 128
Msa0389580 MtrunA17_Chr4g0065141 32.692 260 133 8 1 231 98 344 7.63e-34 126
Msa0389580 MtrunA17_Chr3g0126511 36.250 240 132 7 1 231 107 334 3.55e-33 124
Msa0389580 MtrunA17_Chr5g0430481 32.389 247 137 6 1 231 136 368 5.96e-31 118
Msa0389580 MtrunA17_Chr5g0407161 33.043 230 121 7 20 231 125 339 3.00e-30 116
Msa0389580 MtrunA17_Chr3g0144111 32.031 256 114 9 1 231 1 221 5.30e-29 110
Msa0389580 MtrunA17_Chr2g0317021 35.426 223 119 8 20 231 118 326 1.68e-28 111
Msa0389580 MtrunA17_Chr3g0105371 31.174 247 140 6 1 231 100 332 5.33e-28 110
Msa0389580 MtrunA17_Chr3g0112291 33.778 225 129 7 1 208 105 326 1.53e-27 109
Msa0389580 MtrunA17_Chr2g0293811 34.167 240 115 10 20 231 101 325 1.59e-27 109
Msa0389580 MtrunA17_Chr4g0050381 32.645 242 138 8 1 231 43 270 6.87e-27 105
Msa0389580 MtrunA17_Chr3g0105351 30.769 247 141 6 1 231 76 308 2.00e-26 105
Msa0389580 MtrunA17_Chr4g0051661 33.884 242 134 8 1 231 165 391 2.58e-26 106
Msa0389580 MtrunA17_Chr3g0115851 31.405 242 141 8 1 231 48 275 1.46e-25 102
Msa0389580 MtrunA17_Chr1g0194191 31.461 267 132 10 1 231 92 343 2.25e-25 103
Msa0389580 MtrunA17_Chr4g0001761 32.955 264 114 14 1 208 36 292 5.05e-25 102
Msa0389580 MtrunA17_Chr2g0279151 32.653 245 134 9 1 231 47 274 5.55e-25 100
Msa0389580 MtrunA17_Chr8g0360351 33.632 223 123 8 20 231 67 275 2.13e-24 99.0
Msa0389580 MtrunA17_Chr5g0435721 31.696 224 133 7 1 208 205 424 3.32e-24 101
Msa0389580 MtrunA17_Chr1g0150071 31.154 260 116 11 1 204 36 288 3.78e-24 99.8
Msa0389580 MtrunA17_Chr5g0426141 30.992 242 142 8 1 231 48 275 1.26e-23 97.1
Msa0389580 MtrunA17_Chr1g0150781 29.278 263 135 8 12 231 283 537 1.00e-22 97.4
Msa0389580 MtrunA17_Chr3g0136811 29.286 280 130 13 1 224 36 303 2.90e-22 94.7
Msa0389580 MtrunA17_Chr6g0483411 30.645 248 125 9 20 233 80 314 3.12e-22 94.0
Msa0389580 MtrunA17_Chr3g0135961 29.520 271 144 10 12 239 279 545 7.08e-22 94.7
Msa0389580 MtrunA17_Chr2g0299981 30.100 299 139 12 1 231 233 529 1.01e-21 94.4
Msa0389580 MtrunA17_Chr4g0070871 29.932 294 128 12 1 231 219 497 4.71e-20 89.4
Msa0389580 MtrunA17_Chr5g0396731 40.000 130 66 4 88 208 177 303 6.41e-18 82.4
Msa0389580 MtrunA17_Chr7g0272061 28.077 260 130 9 14 222 86 339 1.54e-17 81.6
Msa0389580 MtrunA17_Chr8g0389921 32.178 202 104 9 17 199 196 383 8.85e-17 79.7
Msa0389580 MtrunA17_Chr7g0243571 33.758 157 82 6 88 223 188 343 9.89e-16 76.6
Msa0389580 MtrunA17_Chr1g0181901 28.936 235 106 11 21 206 78 300 1.23e-15 76.3
Msa0389580 MtrunA17_Chr4g0004971 27.626 257 144 10 14 229 73 328 1.32e-15 75.9
Msa0389580 MtrunA17_Chr7g0263281 26.821 302 162 12 21 273 73 364 1.59e-15 75.5
Msa0389580 MtrunA17_Chr7g0221691 33.333 171 87 6 55 203 204 369 4.33e-15 74.7
Msa0389580 MtrunA17_Chr1g0192421 27.668 253 131 10 14 222 84 328 5.48e-15 73.9
Msa0389580 MtrunA17_Chr7g0256751 28.352 261 135 11 15 231 65 317 5.64e-15 74.3
Msa0389580 MtrunA17_Chr3g0133801 28.151 238 130 7 20 231 67 289 9.83e-15 73.6
Msa0389580 MtrunA17_Chr1g0213351 29.204 226 113 8 21 204 82 302 1.30e-14 73.2
Msa0389580 MtrunA17_Chr1g0158781 35.099 151 71 5 105 231 226 373 3.27e-14 72.0
Msa0389580 MtrunA17_Chr2g0295401 27.234 235 124 9 14 206 87 316 3.71e-14 71.6
Msa0389580 MtrunA17_Chr7g0271971 29.583 240 128 6 20 233 69 293 1.21e-13 70.5
Msa0389580 MtrunA17_Chr2g0324061 32.143 168 87 6 58 203 161 323 1.42e-13 70.1
Msa0389580 MtrunA17_Chr1g0207571 27.863 262 138 10 10 227 52 306 1.50e-13 70.1
Msa0389580 MtrunA17_Chr1g0192471 29.167 240 129 6 20 233 69 293 6.05e-13 68.2
Msa0389580 MtrunA17_Chr7g0249421 30.814 172 92 6 54 203 178 344 9.20e-13 67.8
Msa0389580 MtrunA17_Chr1g0209451 29.832 238 126 8 20 231 69 291 1.01e-12 67.8
Msa0389580 MtrunA17_Chr7g0256771 26.250 240 126 8 20 215 71 303 1.39e-12 66.6
Msa0389580 MtrunA17_Chr4g0068971 36.066 122 64 4 119 231 109 225 1.70e-12 65.9
Msa0389580 MtrunA17_Chr4g0067711 25.439 228 131 8 14 203 86 312 1.73e-12 66.6
Msa0389580 MtrunA17_Chr3g0089721 26.613 248 137 8 20 227 69 311 1.92e-12 66.6
Msa0389580 MtrunA17_Chr3g0089711 26.613 248 137 8 20 227 69 311 1.96e-12 66.6
Msa0389580 MtrunA17_Chr7g0250061 24.016 254 134 10 21 227 78 319 4.03e-12 65.9
Msa0389580 MtrunA17_Chr4g0022171 31.548 168 88 6 58 203 168 330 5.53e-12 65.5
Msa0389580 MtrunA17_Chr4g0066371 27.338 278 142 12 2 231 69 334 2.02e-11 63.5
Msa0389580 MtrunA17_Chr1g0151781 26.087 230 112 9 21 203 70 288 4.07e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389580 AT2G40860.4 66.109 239 72 2 1 231 307 544 5.56e-108 324
Msa0389580 AT2G40860.1 66.109 239 72 2 1 231 405 642 5.16e-107 324
Msa0389580 AT2G40860.2 65.517 232 71 2 1 224 405 635 9.88e-103 312
Msa0389580 AT2G40860.3 63.542 192 61 2 1 184 405 595 5.69e-80 253
Msa0389580 AT4G31750.2 40.724 221 110 7 20 231 65 273 2.84e-40 142
Msa0389580 AT4G31750.1 40.724 221 110 7 20 231 65 273 3.75e-40 141
Msa0389580 AT4G31750.3 40.724 221 110 7 20 231 65 273 3.75e-40 141
Msa0389580 AT5G24940.1 40.271 221 111 6 20 231 65 273 8.53e-40 144
Msa0389580 AT5G10740.1 39.167 240 125 6 1 231 46 273 6.02e-38 137
Msa0389580 AT5G10740.2 39.167 240 125 6 1 231 46 273 6.02e-38 137
Msa0389580 AT1G43900.1 39.394 231 112 8 13 231 148 362 5.16e-35 129
Msa0389580 AT1G67820.2 33.099 284 155 7 1 269 97 360 1.28e-34 129
Msa0389580 AT5G53140.1 34.155 284 160 8 1 274 114 380 1.82e-34 129
Msa0389580 AT5G53140.2 34.155 284 160 8 1 274 114 380 1.82e-34 129
Msa0389580 AT1G67820.1 33.099 284 155 7 1 269 133 396 2.14e-34 129
Msa0389580 AT2G25620.1 36.017 236 113 8 20 231 129 350 4.54e-34 127
Msa0389580 AT2G25620.2 36.017 236 113 8 20 231 129 350 4.54e-34 127
Msa0389580 AT2G33700.1 33.074 257 131 9 1 231 97 338 1.69e-30 117
Msa0389580 AT3G51470.2 33.043 230 121 7 20 231 63 277 4.39e-29 112
Msa0389580 AT3G51470.1 33.043 230 121 7 20 231 107 321 6.32e-29 113
Msa0389580 AT1G07160.1 32.129 249 138 5 1 231 135 370 6.40e-29 113
Msa0389580 AT3G62260.3 34.167 240 116 9 20 231 28 253 1.09e-27 108
Msa0389580 AT2G30020.1 32.661 248 137 7 1 231 152 386 3.04e-27 109
Msa0389580 AT3G62260.1 34.167 240 116 9 20 231 117 342 3.57e-27 108
Msa0389580 AT3G62260.2 34.167 240 116 9 20 231 118 343 3.84e-27 108
Msa0389580 AT1G48040.1 33.333 261 136 11 1 231 91 343 6.11e-27 108
Msa0389580 AT2G40180.1 32.922 243 127 6 20 241 162 389 9.12e-27 107
Msa0389580 AT1G78200.5 33.745 243 137 9 1 231 1 231 1.67e-26 103
Msa0389580 AT1G78200.4 33.745 243 137 9 1 231 1 231 1.67e-26 103
Msa0389580 AT3G17250.1 31.518 257 124 11 6 231 152 387 2.26e-26 107
Msa0389580 AT1G78200.1 33.745 243 137 9 1 231 46 276 6.66e-26 103
Msa0389580 AT1G78200.3 33.745 243 137 9 1 231 46 276 6.66e-26 103
Msa0389580 AT1G78200.2 33.745 243 137 9 1 231 46 276 6.66e-26 103
Msa0389580 AT3G15260.2 34.685 222 122 8 20 231 74 282 3.46e-25 101
Msa0389580 AT3G15260.1 34.685 222 122 8 20 231 74 282 3.46e-25 101
Msa0389580 AT1G34750.2 35.081 248 124 11 1 231 48 275 1.15e-24 100
Msa0389580 AT1G34750.1 35.081 248 124 11 1 231 48 275 1.15e-24 100
Msa0389580 AT1G34750.3 35.081 248 124 11 1 231 48 275 1.15e-24 100
Msa0389580 AT4G28400.3 32.735 223 125 8 20 231 46 254 1.24e-24 99.8
Msa0389580 AT1G22280.1 30.833 240 145 7 1 231 47 274 2.00e-24 99.8
Msa0389580 AT4G28400.1 32.735 223 125 8 20 231 68 276 2.39e-24 99.4
Msa0389580 AT2G34740.1 33.484 221 126 5 20 231 120 328 4.60e-24 99.8
Msa0389580 AT2G25070.1 30.682 264 120 12 1 208 36 292 5.45e-24 99.8
Msa0389580 AT2G25070.2 30.682 264 120 12 1 208 36 292 5.45e-24 99.8
Msa0389580 AT1G22280.3 32.258 248 137 10 1 231 47 280 6.80e-24 98.2
Msa0389580 AT1G07430.1 31.304 230 125 9 1 204 133 355 3.01e-23 98.6
Msa0389580 AT2G20630.1 31.416 226 132 8 16 231 60 272 9.73e-23 95.1
Msa0389580 AT5G57050.2 28.996 269 128 10 9 231 114 365 1.07e-22 96.7
Msa0389580 AT5G57050.1 28.996 269 128 10 9 231 154 405 1.40e-22 96.7
Msa0389580 AT2G20630.2 31.416 226 132 8 16 231 60 272 2.34e-22 94.4
Msa0389580 AT3G11410.1 30.380 237 136 8 1 211 117 350 4.41e-22 95.1
Msa0389580 AT1G18030.1 29.150 247 130 8 20 233 110 344 1.41e-21 93.2
Msa0389580 AT4G26080.1 29.845 258 121 8 20 231 173 416 2.61e-21 93.2
Msa0389580 AT2G29380.1 32.618 233 131 9 1 211 90 318 4.07e-21 92.0
Msa0389580 AT1G17550.1 28.772 285 143 11 8 239 230 507 1.74e-20 91.3
Msa0389580 AT1G17550.2 28.772 285 143 11 8 239 230 507 1.74e-20 91.3
Msa0389580 AT3G16800.2 30.204 245 129 10 14 222 88 326 5.85e-20 88.6
Msa0389580 AT3G16800.1 30.204 245 129 10 14 222 88 326 5.85e-20 88.6
Msa0389580 AT3G16800.3 30.204 245 129 10 14 222 88 326 5.85e-20 88.6
Msa0389580 AT5G59220.1 30.973 226 128 9 1 204 124 343 6.65e-20 89.0
Msa0389580 AT5G51760.2 32.114 246 122 11 1 209 91 328 6.98e-20 88.6
Msa0389580 AT5G51760.1 32.114 246 122 11 1 209 121 358 7.46e-20 89.0
Msa0389580 AT4G31860.3 28.409 264 124 13 1 207 36 291 4.64e-19 85.1
Msa0389580 AT3G16800.4 33.544 158 81 5 88 222 75 231 5.91e-19 84.3
Msa0389580 AT3G16800.6 33.544 158 81 5 88 222 75 231 5.91e-19 84.3
Msa0389580 AT4G31860.1 27.757 263 127 12 1 207 36 291 7.41e-19 85.5
Msa0389580 AT4G08260.1 29.237 236 128 8 1 231 1 202 1.61e-18 82.0
Msa0389580 AT2G34740.2 32.240 183 104 4 20 193 134 305 3.09e-18 83.2
Msa0389580 AT1G72770.4 35.676 185 83 7 88 239 326 507 3.12e-18 84.7
Msa0389580 AT1G72770.1 35.676 185 83 7 88 239 326 507 3.12e-18 84.7
Msa0389580 AT1G72770.3 35.676 185 83 7 88 239 326 507 3.12e-18 84.7
Msa0389580 AT2G34740.3 32.240 183 104 4 20 193 116 287 4.00e-18 82.8
Msa0389580 AT5G27930.1 27.843 255 129 9 14 222 87 332 1.04e-17 82.4
Msa0389580 AT5G27930.2 27.843 255 129 9 14 222 87 332 1.04e-17 82.4
Msa0389580 AT5G02760.1 25.926 243 135 7 9 210 60 298 3.10e-17 80.9
Msa0389580 AT3G05640.2 29.762 252 122 12 14 222 88 327 4.00e-17 80.5
Msa0389580 AT3G05640.1 29.762 252 122 12 14 222 88 327 4.00e-17 80.5
Msa0389580 AT3G05640.3 29.762 252 122 12 14 222 88 327 4.00e-17 80.5
Msa0389580 AT3G12620.2 29.482 251 125 10 21 227 85 327 5.94e-17 80.1
Msa0389580 AT3G12620.1 29.482 251 125 10 21 227 85 327 5.94e-17 80.1
Msa0389580 AT1G34750.4 33.333 207 108 9 1 193 48 238 1.46e-16 77.4
Msa0389580 AT4G28400.2 32.432 185 101 7 20 193 68 239 1.55e-16 77.4
Msa0389580 AT1G03590.1 30.612 245 112 9 12 203 83 322 2.21e-16 79.0
Msa0389580 AT4G32950.1 29.032 217 122 8 21 211 74 284 4.37e-16 77.4
Msa0389580 AT1G09160.2 27.797 295 150 9 20 269 69 345 8.98e-16 77.0
Msa0389580 AT1G09160.1 27.797 295 150 9 20 269 69 345 8.98e-16 77.0
Msa0389580 AT4G27800.1 26.641 259 134 8 22 231 91 342 8.98e-16 77.0
Msa0389580 AT4G31860.2 28.629 248 112 13 1 191 36 275 1.12e-15 75.5
Msa0389580 AT5G26010.1 27.660 235 124 8 5 203 59 283 1.47e-15 75.9
Msa0389580 AT1G18030.2 28.079 203 105 6 20 193 110 300 1.77e-15 75.5
Msa0389580 AT1G47380.1 27.731 238 131 7 20 231 65 287 3.95e-15 75.1
Msa0389580 AT4G03415.1 36.310 168 80 7 58 203 170 332 5.06e-15 75.1
Msa0389580 AT4G03415.3 36.310 168 80 7 58 203 170 332 5.06e-15 75.1
Msa0389580 AT4G03415.2 36.310 168 80 7 58 203 170 332 5.06e-15 75.1
Msa0389580 AT3G51370.1 26.275 255 129 9 20 227 80 322 5.21e-15 74.7
Msa0389580 AT3G51370.3 26.275 255 129 9 20 227 80 322 5.21e-15 74.7
Msa0389580 AT3G27140.1 26.523 279 144 7 1 272 1 225 7.36e-15 72.8
Msa0389580 AT4G38520.2 27.451 255 124 10 21 227 83 324 1.37e-14 73.6
Msa0389580 AT4G38520.1 27.451 255 124 10 21 227 83 324 1.37e-14 73.6
Msa0389580 AT3G51370.2 29.444 180 83 7 88 227 62 237 3.77e-14 71.2
Msa0389580 AT4G33920.1 25.856 263 143 8 10 227 52 307 1.41e-13 70.5
Msa0389580 AT3G55050.1 26.908 249 133 9 21 227 86 327 1.81e-13 70.1
Msa0389580 AT3G55050.2 26.908 249 133 9 21 227 86 327 1.81e-13 70.1
Msa0389580 AT4G27800.3 25.847 236 122 7 22 211 91 319 7.94e-13 67.8
Msa0389580 AT4G27800.2 25.911 247 128 8 22 222 91 328 8.36e-13 67.8
Msa0389580 AT5G66080.1 25.403 248 138 8 21 227 84 325 1.00e-11 65.1
Msa0389580 AT5G27930.3 26.141 241 123 9 14 208 87 318 1.07e-11 64.7
Msa0389580 AT5G66080.2 28.889 180 84 7 88 227 46 221 3.09e-11 62.8
Msa0389580 AT3G02750.2 32.353 170 88 7 56 203 189 353 7.32e-11 62.8
Msa0389580 AT3G02750.1 32.353 170 88 7 56 203 189 353 7.32e-11 62.8

Find 158 sgRNAs with CRISPR-Local

Find 607 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCTAGCTCAACTGATTT+TGG 0.133557 3_1:+94524162 Msa0389580:five_prime_UTR
ACTTGCAGAGGATGAATTTC+TGG 0.159572 3_1:+94526475 Msa0389580:CDS
AATTCCTTTCTTAATATTTC+AGG 0.171598 3_1:-94522020 None:intergenic
CTTGAGAATTGGAAGTCTTC+TGG 0.198081 3_1:+94521939 Msa0389580:five_prime_UTR
TGTCCACACCTCACAGATTT+TGG 0.200504 3_1:+94521879 Msa0389580:five_prime_UTR
GGTTGGAACACTTGTTTATA+TGG 0.217313 3_1:+94521995 Msa0389580:five_prime_UTR
TGAATACAAGAGTGATATTA+AGG 0.242941 3_1:+94521908 Msa0389580:five_prime_UTR
AGTTGGTCTTCCTGCGCTTC+AGG 0.268183 3_1:+94525737 Msa0389580:CDS
GAAAAGGATGTCTATGCTTT+TGG 0.278151 3_1:+94524318 Msa0389580:CDS
AAGTCAGATGTATACAGTTT+TGG 0.291480 3_1:+94522053 Msa0389580:five_prime_UTR
TTGAACCTAACACTTGCATT+AGG 0.295598 3_1:+94518396 Msa0389580:five_prime_UTR
TGAAGGCAGTATCTGTTCTA+AGG 0.320075 3_1:-94525353 None:intergenic
TGAACCTAACACTTGCATTA+GGG 0.320660 3_1:+94518397 Msa0389580:five_prime_UTR
GCAATTAGTGTTGCTATTCC+CGG 0.332324 3_1:-94520651 None:intergenic
ATCAATAATAAGTACCTCTA+TGG 0.338330 3_1:-94524353 None:intergenic
AAGAGGAAGGAGGGAGATGA+AGG 0.350063 3_1:-94518445 None:intergenic
CTGCAGTTACAGCAGGCTTC+AGG 0.353696 3_1:-94526427 None:intergenic
TAACTCGTGAAATTGAAATT+CGG 0.358360 3_1:+94527290 Msa0389580:CDS
AACTCGTGAAATTGAAATTC+GGG 0.362323 3_1:+94527291 Msa0389580:CDS
GTGTTGAGAAAGAGACAAAA+TGG 0.364169 3_1:-94518649 None:intergenic
AGGGAGTTTCTCTTGAGAAT+TGG 0.371907 3_1:+94521928 Msa0389580:five_prime_UTR
TGTTGCAGTGAACTCCTTAC+TGG 0.372606 3_1:+94523092 Msa0389580:intron
AACCAGGATGCCAATCCTTC+TGG 0.374377 3_1:-94525416 None:intergenic
ACAAACAATTACAATTGCTT+TGG 0.376808 3_1:+94518685 Msa0389580:five_prime_UTR
ATCATCGATACTAATCTTGA+TGG 0.382486 3_1:-94523932 None:intergenic
AAAGCAATTGTAATTGTTTG+TGG 0.383470 3_1:-94518683 None:intergenic
GAAGAGAGTAAGAGGAAGGA+GGG 0.383735 3_1:-94518454 None:intergenic
ATACCGTCCAGTACTGTCTT+GGG 0.396369 3_1:+94524224 Msa0389580:five_prime_UTR
GGATGTGATAAATATAATAA+AGG 0.396730 3_1:+94526920 Msa0389580:CDS
TTGAAGTGACCTCTGGCAAT+AGG 0.402819 3_1:-94518482 None:intergenic
GGTCTGCCAAGGAGAGCTTT+TGG 0.402842 3_1:+94524131 Msa0389580:five_prime_UTR
ACAGTTACAAGAATATTTGC+AGG 0.406157 3_1:-94521736 None:intergenic
AGGGAGATGAAGGGGAATAG+AGG 0.407126 3_1:-94518435 None:intergenic
AAGCTATTTGTTGCTAATAG+TGG 0.407321 3_1:+94525471 Msa0389580:CDS
TAAGCGCGTCATTGACGGTT+GGG 0.409607 3_1:-94520764 None:intergenic
GGTCCTTGCCAGCGAGGAGT+TGG 0.420731 3_1:+94523904 Msa0389580:five_prime_UTR
TATCATAAGCGCGTCATTGA+CGG 0.422397 3_1:-94520769 None:intergenic
GGGGATCTTATGCTACTTGT+GGG 0.427784 3_1:+94524244 Msa0389580:five_prime_UTR
TTGTGGGAGACGGGAGGCTA+TGG 0.428290 3_1:+94524260 Msa0389580:exon
TTCATGCTGGCCCACAAAAC+GGG 0.428670 3_1:+94527211 Msa0389580:CDS
ATGTAACTTGTGGCCGAGAT+TGG 0.436029 3_1:-94520727 None:intergenic
AGTTGAGCTAGAGGTATTCC+TGG 0.436683 3_1:-94524154 None:intergenic
TCTGCACGAAGATCAGTATA+TGG 0.437687 3_1:-94523122 None:intergenic
TTGTCCACAAGTTGGTCAAC+AGG 0.440455 3_1:-94524085 None:intergenic
AAATTCATCCTCTGCAAGTA+AGG 0.440829 3_1:-94526471 None:intergenic
ATCCTTCTGGATACATCTGT+TGG 0.448814 3_1:-94525403 None:intergenic
ATTCATGCTGGCCCACAAAA+CGG 0.449702 3_1:+94527210 Msa0389580:CDS
AGAGGAAGGAGGGAGATGAA+GGG 0.449826 3_1:-94518444 None:intergenic
TGCTAATAGTGGTGATTGTC+GGG 0.451390 3_1:+94525482 Msa0389580:CDS
TTGCTAATAGTGGTGATTGT+CGG 0.452351 3_1:+94525481 Msa0389580:CDS
GTCCTTGCCAGCGAGGAGTT+GGG 0.455942 3_1:+94523905 Msa0389580:five_prime_UTR
GAGGAAGGAGGGAGATGAAG+GGG 0.458455 3_1:-94518443 None:intergenic
CATACCGTCCAGTACTGTCT+TGG 0.460025 3_1:+94524223 Msa0389580:five_prime_UTR
ATCCAGAAGGATTGGCATCC+TGG 0.466059 3_1:+94525414 Msa0389580:CDS
TGGGGATCTTATGCTACTTG+TGG 0.471594 3_1:+94524243 Msa0389580:five_prime_UTR
TATCAACTTGCCAATGAACT+TGG 0.473486 3_1:-94525707 None:intergenic
CAAGTTACATGTAGAAGAAT+GGG 0.473748 3_1:+94520740 Msa0389580:five_prime_UTR
AACTCCTCGCTGGCAAGGAC+CGG 0.474157 3_1:-94523902 None:intergenic
AGAAGAGAGTAAGAGGAAGG+AGG 0.476210 3_1:-94518455 None:intergenic
ACAAGTTACATGTAGAAGAA+TGG 0.477849 3_1:+94520739 Msa0389580:five_prime_UTR
CAACCCCTAATGCAAGTGTT+AGG 0.478214 3_1:-94518401 None:intergenic
TGTTGAGAAAGAGACAAAAT+GGG 0.479313 3_1:-94518648 None:intergenic
GGGCCAGCATGAATTGTGAT+TGG 0.484996 3_1:-94527201 None:intergenic
AAAAGAAGAGAGTAAGAGGA+AGG 0.486088 3_1:-94518458 None:intergenic
TATCGATGATACGAAAGTGC+TGG 0.486850 3_1:+94523945 Msa0389580:five_prime_UTR
CGCAGGAAGACCAACTCTCC+AGG 0.488637 3_1:-94525730 None:intergenic
GGCACCTGAAATATTAAGAA+AGG 0.491206 3_1:+94522016 Msa0389580:five_prime_UTR
GTGGGATGTGATGAGCAGTT+TGG 0.491797 3_1:+94526899 Msa0389580:CDS
AAGGTGCTCTCAGTTATCTC+AGG 0.494827 3_1:-94526452 None:intergenic
ACAGCAGCTGTTGTTTCCGA+TGG 0.497842 3_1:+94523872 Msa0389580:five_prime_UTR
GCAATTGCTGCTATTGTAAG+TGG 0.498260 3_1:+94525444 Msa0389580:CDS
TCAGGTTCTGCAGTTACAGC+AGG 0.499345 3_1:-94526434 None:intergenic
TGCAATATCTGCATAACCTC+GGG 0.499566 3_1:+94521692 Msa0389580:five_prime_UTR
TCATGGCTAGCGATGGTCTG+TGG 0.500915 3_1:+94526880 Msa0389580:CDS
TTATATGAGTCTTCCAATCT+CGG 0.501150 3_1:+94520714 Msa0389580:five_prime_UTR
AATAAAGGACACAGTTAAAG+AGG 0.503043 3_1:+94526935 Msa0389580:CDS
TTATGCTACTTGTGGGAGAC+GGG 0.506131 3_1:+94524251 Msa0389580:five_prime_UTR
CAATTAGTGTTGCTATTCCC+GGG 0.506160 3_1:-94520650 None:intergenic
CTTATGATAACAATGCAGTT+AGG 0.506972 3_1:+94520783 Msa0389580:five_prime_UTR
GGTATCTTTGATGGCCATAG+AGG 0.508221 3_1:+94524339 Msa0389580:CDS
GTTTATGAAGGCACTTTGAA+TGG 0.514583 3_1:+94518603 Msa0389580:five_prime_UTR
TAAGATCCCCAAGACAGTAC+TGG 0.516537 3_1:-94524231 None:intergenic
CAGTCCTGCTAATGCACTAG+TGG 0.524818 3_1:+94525323 Msa0389580:intron
AGTACTGGACGGTATGCAAA+AGG 0.525487 3_1:-94524216 None:intergenic
TTCATTGGCAAGTTGATACC+TGG 0.525708 3_1:+94525712 Msa0389580:CDS
ACAGATGTATCCAGAAGGAT+TGG 0.526268 3_1:+94525406 Msa0389580:CDS
ACCAAAATCAGTTGAGCTAG+AGG 0.526725 3_1:-94524163 None:intergenic
TCCTGGCCAAAAGCTCTCCT+TGG 0.528361 3_1:-94524137 None:intergenic
GCTGAAAGTGTTGTTTATGA+AGG 0.529538 3_1:+94518591 Msa0389580:five_prime_UTR
AAGTCTTCTGGAAAACCTAC+TGG 0.530254 3_1:+94521951 Msa0389580:five_prime_UTR
TGATCTTCGTGCAGAAGCAC+AGG 0.533337 3_1:+94523130 Msa0389580:five_prime_UTR
CAAGTTGATACCTGGAGAGT+TGG 0.533752 3_1:+94525720 Msa0389580:CDS
AAGCGCGTCATTGACGGTTG+GGG 0.536439 3_1:-94520763 None:intergenic
GAACATGCGTAGTATGCGGC+AGG 0.538352 3_1:+94518194 Msa0389580:five_prime_UTR
GGCTCTGTGGATAACACAGT+CGG 0.539024 3_1:+94527265 Msa0389580:CDS
CTTATGCTACTTGTGGGAGA+CGG 0.539763 3_1:+94524250 Msa0389580:five_prime_UTR
TTCCTTGACAATCTCATCAA+AGG 0.540316 3_1:-94523993 None:intergenic
GAGTATTAGCTGGTCTGCCA+AGG 0.541519 3_1:+94524120 Msa0389580:five_prime_UTR
TTCCTCATGGCAGGCTCACA+CGG 0.546790 3_1:+94523817 Msa0389580:intron
GATAAGTCTTGTCCACAAGT+TGG 0.547638 3_1:-94524093 None:intergenic
ATCGATGATACGAAAGTGCT+GGG 0.551096 3_1:+94523946 Msa0389580:five_prime_UTR
GCTTCCACTAGTGCATTAGC+AGG 0.551113 3_1:-94525327 None:intergenic
AAGGACACAGTTAAAGAGGC+AGG 0.551195 3_1:+94526939 Msa0389580:CDS
TGGTATACCCAACTCCTCGC+TGG 0.553364 3_1:-94523912 None:intergenic
TTTGAACAAACCTGAAGCGC+AGG 0.554010 3_1:-94525747 None:intergenic
ACATCTGTTGGATTTGCGAT+AGG 0.554376 3_1:-94525391 None:intergenic
GAATACAAGAGTGATATTAA+GGG 0.555573 3_1:+94521909 Msa0389580:five_prime_UTR
ACACAGGTTACTCGTTCTAT+CGG 0.555758 3_1:+94526395 Msa0389580:intron
CAGCATGAATTGTGATTGGT+TGG 0.557999 3_1:-94527197 None:intergenic
AGGCAGGCATGTGCTCTAAG+AGG 0.561824 3_1:+94526955 Msa0389580:CDS
GGAACACAGGAAGGTAAAGA+AGG 0.562426 3_1:+94524030 Msa0389580:five_prime_UTR
AGAGAGCGTGTTATTCGTCA+AGG 0.562917 3_1:+94525681 Msa0389580:CDS
AGGCATGTGCTCTAAGAGGT+TGG 0.563444 3_1:+94526959 Msa0389580:CDS
CTTATCAAGAGAGTATTAGC+TGG 0.563484 3_1:+94524110 Msa0389580:five_prime_UTR
ATGTAGCAAGCTAGATCACC+CGG 0.564193 3_1:+94520632 Msa0389580:intron
TACCCAACTCCTCGCTGGCA+AGG 0.564473 3_1:-94523907 None:intergenic
TGGTCAACAGGCAAGTTACA+AGG 0.565006 3_1:-94524073 None:intergenic
TGGGAGACGGGAGGCTATGG+AGG 0.565803 3_1:+94524263 Msa0389580:exon
CCAAGAGTTTGCAAAACTGC+TGG 0.567605 3_1:-94525198 None:intergenic
TATATGGCACAACACCAGTA+AGG 0.567712 3_1:-94523106 None:intergenic
GAACCTAACACTTGCATTAG+GGG 0.572654 3_1:+94518398 Msa0389580:five_prime_UTR
TTCCTTTGATGAGATTGTCA+AGG 0.575654 3_1:+94523991 Msa0389580:five_prime_UTR
CTTGCCTGTTGACCAACTTG+TGG 0.576498 3_1:+94524081 Msa0389580:five_prime_UTR
GCTCTGTGGATAACACAGTC+GGG 0.577633 3_1:+94527266 Msa0389580:CDS
GAGGTTGGCTACGGAAGCTG+TGG 0.580999 3_1:+94526974 Msa0389580:CDS
ATTCTTCTACATGTAACTTG+TGG 0.584968 3_1:-94520737 None:intergenic
TTGCAATATCTGCATAACCT+CGG 0.586648 3_1:+94521691 Msa0389580:five_prime_UTR
TTGACAATCTCATCAAAGGA+AGG 0.588142 3_1:-94523989 None:intergenic
CAACCAATCACAATTCATGC+TGG 0.588327 3_1:+94527198 Msa0389580:CDS
CATGGCTAGCGATGGTCTGT+GGG 0.589824 3_1:+94526881 Msa0389580:CDS
GTGCTCTAAGAGGTTGGCTA+CGG 0.591130 3_1:+94526965 Msa0389580:CDS
ATTTAGGTCATGGCTAGCGA+TGG 0.593264 3_1:+94526873 Msa0389580:intron
GCAGCAATTGCTGTACAACC+AGG 0.594906 3_1:-94525432 None:intergenic
ATAAGCGCGTCATTGACGGT+TGG 0.598959 3_1:-94520765 None:intergenic
AAAAGGCTCGTTGTAAGACT+CGG 0.600954 3_1:-94524199 None:intergenic
TACCGTCCAGTACTGTCTTG+GGG 0.605811 3_1:+94524225 Msa0389580:five_prime_UTR
TGTTTCCGATGGATTACGAC+CGG 0.606733 3_1:+94523883 Msa0389580:five_prime_UTR
AAACCAAAATCTGTGAGGTG+TGG 0.620524 3_1:-94521882 None:intergenic
GAGGTTATGCAGATATTGCA+AGG 0.627695 3_1:-94521689 None:intergenic
TATGTAATTATGTATCATCA+CGG 0.631926 3_1:-94518256 None:intergenic
TGCTACTTGTGGGAGACGGG+AGG 0.635300 3_1:+94524254 Msa0389580:five_prime_UTR
GAGAGCGTGTTATTCGTCAA+GGG 0.636176 3_1:+94525682 Msa0389580:CDS
CAATTGCTGCTATTGTAAGT+GGG 0.636393 3_1:+94525445 Msa0389580:CDS
AAGGACCGGTCGTAATCCAT+CGG 0.638911 3_1:-94523888 None:intergenic
ATCCAACAGATGTATCCAGA+AGG 0.641068 3_1:+94525401 Msa0389580:CDS
AGAGCGTGTTATTCGTCAAG+GGG 0.646900 3_1:+94525683 Msa0389580:CDS
TGAGAGCACCTTACTTGCAG+AGG 0.648662 3_1:+94526463 Msa0389580:CDS
ACACAGGAAGGTAAAGAAGG+TGG 0.651553 3_1:+94524033 Msa0389580:five_prime_UTR
TCTTCTGGAAAACCTACTGG+TGG 0.659523 3_1:+94521954 Msa0389580:five_prime_UTR
GATGGAACATGCGTAGTATG+CGG 0.660318 3_1:+94518190 None:intergenic
GCTACGGAAGCTGTGGAACG+TGG 0.661041 3_1:+94526981 Msa0389580:CDS
CATCTCTATGCAGAATCCCG+AGG 0.675265 3_1:-94521708 None:intergenic
TCGGGCAATCTTATGTCGTG+CGG 0.689265 3_1:+94525500 Msa0389580:CDS
ATCCCCAAGACAGTACTGGA+CGG 0.695919 3_1:-94524227 None:intergenic
ACGACCGGTCCTTGCCAGCG+AGG 0.704362 3_1:+94523898 Msa0389580:five_prime_UTR
GAGCGTGTTATTCGTCAAGG+GGG 0.708390 3_1:+94525684 Msa0389580:CDS
CAGCCAAACCAAAATCTGTG+AGG 0.724742 3_1:-94521887 None:intergenic
TGTAGCAAGCTAGATCACCC+GGG 0.728594 3_1:+94520633 Msa0389580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTATATTTATAAAAA+CGG - chr3_1:94522951-94522970 None:intergenic 0.0%
!! ATAGTTATTATGAATATATA+TGG - chr3_1:94518738-94518757 None:intergenic 10.0%
!! ATATATTCATAATAACTATA+AGG + chr3_1:94518739-94518758 Msa0389580:intron 10.0%
!! AAAGAAAAAATAACTTATTT+AGG - chr3_1:94519288-94519307 None:intergenic 10.0%
!! AATGTTAAAAGTTTATAATT+GGG - chr3_1:94523284-94523303 None:intergenic 10.0%
!! AAATGTTAAAAGTTTATAAT+TGG - chr3_1:94523285-94523304 None:intergenic 10.0%
!! TTAAGAAAAATAATATAATC+AGG + chr3_1:94526308-94526327 Msa0389580:intron 10.0%
!! TAAGAAAAATAATATAATCA+GGG + chr3_1:94526309-94526328 Msa0389580:intron 10.0%
!! ATTGAAATGAAAAAAGATAA+AGG + chr3_1:94518995-94519014 Msa0389580:intron 15.0%
!!! CTTAATTTTAGATAACAATT+TGG - chr3_1:94519022-94519041 None:intergenic 15.0%
!!! TGTTATCTAAAATTAAGTTA+AGG + chr3_1:94519025-94519044 Msa0389580:intron 15.0%
!!! GTTATCTAAAATTAAGTTAA+GGG + chr3_1:94519026-94519045 Msa0389580:intron 15.0%
!!! TAAGTTATTTTTTCTTTACT+TGG + chr3_1:94519291-94519310 Msa0389580:intron 15.0%
!! ATTAATATATAGATAGTGAT+CGG + chr3_1:94519633-94519652 Msa0389580:intron 15.0%
!! TTGAAGAAAAACATATAATT+GGG - chr3_1:94520693-94520712 None:intergenic 15.0%
!! TATAGTTTAACATAATATGA+AGG - chr3_1:94520891-94520910 None:intergenic 15.0%
!! AAAATAAAGTACAAGAAAAA+TGG - chr3_1:94521658-94521677 None:intergenic 15.0%
!! ACTATTAGTAATTTATTACT+TGG + chr3_1:94523688-94523707 Msa0389580:intron 15.0%
!! AAATAAGGAATAAATTAAAG+AGG - chr3_1:94525602-94525621 None:intergenic 15.0%
!! ATTTGATTAGTAATCAAATA+AGG - chr3_1:94525617-94525636 None:intergenic 15.0%
!! CAAATATTAGCATTATTATT+AGG + chr3_1:94525632-94525651 Msa0389580:intron 15.0%
!!! TTTGTATTCTTCTATATTTT+TGG + chr3_1:94526140-94526159 Msa0389580:intron 15.0%
!! TATGTAATTATGTATCATCA+CGG - chr3_1:94518259-94518278 None:intergenic 20.0%
!! GTTATTATGAATATATATGG+AGG - chr3_1:94518735-94518754 None:intergenic 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG - chr3_1:94518783-94518802 None:intergenic 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG - chr3_1:94518784-94518803 None:intergenic 20.0%
!! TTGAAATGAAAAGGATATAA+AGG - chr3_1:94518814-94518833 None:intergenic 20.0%
!! TCATATGAAAATGTATCAAA+AGG + chr3_1:94518967-94518986 Msa0389580:intron 20.0%
!! TAACAACAATAGTTATAGTT+AGG - chr3_1:94519070-94519089 None:intergenic 20.0%
!!! TTAAATTTTTCGATAGTAGA+TGG + chr3_1:94519491-94519510 Msa0389580:intron 20.0%
!! ACATAATTCAGTGTAATAAT+AGG - chr3_1:94519757-94519776 None:intergenic 20.0%
!! TGTATTGTAAAGAATAAATG+TGG + chr3_1:94519851-94519870 Msa0389580:intron 20.0%
!!! TTTTGTTCTTGTTTGATTTT+TGG + chr3_1:94520449-94520468 Msa0389580:intron 20.0%
!! CTTGAAGAAAAACATATAAT+TGG - chr3_1:94520694-94520713 None:intergenic 20.0%
!! AATGTTCATTTACATATTGA+AGG + chr3_1:94521257-94521276 Msa0389580:intron 20.0%
!! CAATTTGCAAATTCTTTATT+TGG - chr3_1:94521487-94521506 None:intergenic 20.0%
!! AACTAGAGAATCAAAAATAT+GGG - chr3_1:94521764-94521783 None:intergenic 20.0%
!! TAACTAGAGAATCAAAAATA+TGG - chr3_1:94521765-94521784 None:intergenic 20.0%
!! AATTCCTTTCTTAATATTTC+AGG - chr3_1:94522023-94522042 None:intergenic 20.0%
!! GTTTAAGAAAAATTGAATGA+TGG + chr3_1:94522131-94522150 Msa0389580:intron 20.0%
!!! CTATTTCTTAAATGCATTAT+AGG + chr3_1:94522234-94522253 Msa0389580:intron 20.0%
!!! ATATTTACTCTGTTTTTCTT+TGG + chr3_1:94522274-94522293 Msa0389580:intron 20.0%
!! TTAATTTCCTAAGAATCAAA+GGG + chr3_1:94523464-94523483 Msa0389580:intron 20.0%
!! ATCAAAATAAAACAAGTTTC+TGG + chr3_1:94523655-94523674 Msa0389580:intron 20.0%
!! TTAGTAATTTATTACTTGGT+TGG + chr3_1:94523692-94523711 Msa0389580:intron 20.0%
!! TAATTATCTTGTTCATTGTA+AGG + chr3_1:94524446-94524465 Msa0389580:intron 20.0%
!! TATTCGATCACAAATAATTA+TGG - chr3_1:94524537-94524556 None:intergenic 20.0%
!! TAATGTAATAAATGAAAAGC+AGG - chr3_1:94524588-94524607 None:intergenic 20.0%
!! GAAAATAAAATTAGAGAAAC+TGG + chr3_1:94524883-94524902 Msa0389580:intron 20.0%
!! TTGTAATTTAATTGAAAGCT+AGG + chr3_1:94525033-94525052 Msa0389580:intron 20.0%
!! TGAAAATTACTATAAACTGT+TGG + chr3_1:94525554-94525573 Msa0389580:intron 20.0%
!! TATAGTTTATATCATGTGTT+TGG + chr3_1:94525778-94525797 Msa0389580:intron 20.0%
!! GTACTTGTAATATATAATGT+TGG - chr3_1:94526088-94526107 None:intergenic 20.0%
!! AAGTACATGTATTATAAACA+AGG + chr3_1:94526102-94526121 Msa0389580:intron 20.0%
!! ATTAATAAGAAAGGAAAAGA+TGG - chr3_1:94526248-94526267 None:intergenic 20.0%
!! AAAGGAAGAATTAATAAGAA+AGG - chr3_1:94526257-94526276 None:intergenic 20.0%
!! GATTGTGAAATTAAAACAAA+AGG - chr3_1:94526275-94526294 None:intergenic 20.0%
!!! TATTGCAAAAAATAAGTTGA+CGG + chr3_1:94526579-94526598 Msa0389580:intron 20.0%
!!! TGCTGATTATATTTATCAAA+AGG + chr3_1:94526638-94526657 Msa0389580:intron 20.0%
!! TTAGTCAACTTAAACTTATT+AGG + chr3_1:94526707-94526726 Msa0389580:intron 20.0%
!!! ATATTTTCCATTATGATGAT+TGG + chr3_1:94526831-94526850 Msa0389580:intron 20.0%
!!! TATTTTCCATTATGATGATT+GGG + chr3_1:94526832-94526851 Msa0389580:intron 20.0%
!!! ATGAATAAGATGATTGATTT+AGG + chr3_1:94526857-94526876 Msa0389580:intron 20.0%
!! GGATGTGATAAATATAATAA+AGG + chr3_1:94526920-94526939 Msa0389580:CDS 20.0%
!! AAAATGAAAGTCAACAAAAA+TGG + chr3_1:94527244-94527263 Msa0389580:CDS 20.0%
!! TGTTTTTCATTTACATTCAC+AGG + chr3_1:94518567-94518586 Msa0389580:intron 25.0%
! AAAGCAATTGTAATTGTTTG+TGG - chr3_1:94518686-94518705 None:intergenic 25.0%
! ACAAACAATTACAATTGCTT+TGG + chr3_1:94518685-94518704 Msa0389580:five_prime_UTR 25.0%
! TATATATGGAGGATTAAAGT+GGG - chr3_1:94518724-94518743 None:intergenic 25.0%
! ATATATATGGAGGATTAAAG+TGG - chr3_1:94518725-94518744 None:intergenic 25.0%
!!! TAGTCCCTTAACTTTATTTT+AGG + chr3_1:94518776-94518795 Msa0389580:intron 25.0%
!!! CTTTATTTTAGGTAACAGTT+TGG + chr3_1:94518787-94518806 Msa0389580:intron 25.0%
! AGGACAAAATTGAAATGAAA+AGG - chr3_1:94518987-94519006 None:intergenic 25.0%
!! TCATTTCAATTTTGTCCTTT+TGG + chr3_1:94518825-94518844 Msa0389580:intron 25.0%
! TCATATTCAAATTGACCAAA+AGG - chr3_1:94518843-94518862 None:intergenic 25.0%
!!! ATTTTCAAGCTTCTAATTCA+TGG + chr3_1:94518863-94518882 Msa0389580:intron 25.0%
!!! ATTCATGGTTTTATTTTCGT+TGG + chr3_1:94518878-94518897 Msa0389580:intron 25.0%
! TATAAGTGTTATATAGGTGT+CGG - chr3_1:94519336-94519355 None:intergenic 25.0%
! ACCTATATAACACTTATATG+AGG + chr3_1:94519338-94519357 Msa0389580:intron 25.0%
! TGAAAAATGTTGATCAAAGA+GGG + chr3_1:94519437-94519456 Msa0389580:intron 25.0%
! GATAGTAGATGGATAAATAA+AGG + chr3_1:94519502-94519521 Msa0389580:intron 25.0%
! TAACAAGATACAATAGTACT+TGG - chr3_1:94519528-94519547 None:intergenic 25.0%
!! GTACTATTGTATCTTGTTAT+AGG + chr3_1:94519529-94519548 Msa0389580:intron 25.0%
! TCCTATGTTAATTACATTAG+CGG + chr3_1:94519658-94519677 Msa0389580:intron 25.0%
! TTTATTTGCACATCAACTAA+TGG + chr3_1:94519797-94519816 Msa0389580:intron 25.0%
!!! AGTATCTTTAGTCTTATTCT+AGG + chr3_1:94520052-94520071 Msa0389580:intron 25.0%
! CCGAAAGATAAAATCATTAT+GGG - chr3_1:94520152-94520171 None:intergenic 25.0%
!! CCCATAATGATTTTATCTTT+CGG + chr3_1:94520149-94520168 Msa0389580:intron 25.0%
!! CCATAATGATTTTATCTTTC+GGG + chr3_1:94520150-94520169 Msa0389580:intron 25.0%
!! CATAATGATTTTATCTTTCG+GGG + chr3_1:94520151-94520170 Msa0389580:intron 25.0%
!!! ACTTCACATTTTTTTGTGAA+TGG - chr3_1:94520570-94520589 None:intergenic 25.0%
! AAGAAAAACATATAATTGGG+TGG - chr3_1:94520690-94520709 None:intergenic 25.0%
!! TGTTAAACTATAGTGTTGTT+TGG + chr3_1:94520899-94520918 Msa0389580:intron 25.0%
! AAATCAAGGTGTATATGATT+TGG + chr3_1:94520924-94520943 Msa0389580:intron 25.0%
! GTCACAAATACCATATTTAT+CGG + chr3_1:94520950-94520969 Msa0389580:intron 25.0%
! TCATTTACATATTGAAGGAT+TGG + chr3_1:94521262-94521281 Msa0389580:intron 25.0%
! CATTTACATATTGAAGGATT+GGG + chr3_1:94521263-94521282 Msa0389580:intron 25.0%
! GGACATTTAACTAATAATTC+TGG - chr3_1:94521466-94521485 None:intergenic 25.0%
! TTGAGGTTGTTAAAATACAA+TGG - chr3_1:94521557-94521576 None:intergenic 25.0%
!!! TTGTATTTTAACAACCTCAA+AGG + chr3_1:94521557-94521576 Msa0389580:intron 25.0%
!!! GTACTTTATTTTTACAGCAA+AGG + chr3_1:94521666-94521685 Msa0389580:intron 25.0%
! AAAGATACATTAGATTGGTA+AGG - chr3_1:94521837-94521856 None:intergenic 25.0%
! TGAATACAAGAGTGATATTA+AGG + chr3_1:94521908-94521927 Msa0389580:five_prime_UTR 25.0%
! GAATACAAGAGTGATATTAA+GGG + chr3_1:94521909-94521928 Msa0389580:five_prime_UTR 25.0%
!! TGGTTTTCACAAAAAGAATA+TGG + chr3_1:94521974-94521993 Msa0389580:five_prime_UTR 25.0%
! TTTCACAAAAAGAATATGGT+TGG + chr3_1:94521978-94521997 Msa0389580:five_prime_UTR 25.0%
!! CTTCAATTCGTATTTCTTTT+TGG + chr3_1:94522109-94522128 Msa0389580:intron 25.0%
! CATACTTAATCATGGTAAAA+CGG - chr3_1:94522214-94522233 None:intergenic 25.0%
! AGAAATAGCATACTTAATCA+TGG - chr3_1:94522222-94522241 None:intergenic 25.0%
! GAAAAACAGAGTAAATATCT+TGG - chr3_1:94522272-94522291 None:intergenic 25.0%
! AAATGAAAAAACGAAAGATG+TGG - chr3_1:94522342-94522361 None:intergenic 25.0%
! ATATTCATCATTGTTGTCAA+TGG + chr3_1:94522373-94522392 Msa0389580:intron 25.0%
! TTGTATAAGTTTCTGTTTGT+AGG - chr3_1:94522523-94522542 None:intergenic 25.0%
!!! CTTATACAAGAAACTTTTTC+TGG + chr3_1:94522534-94522553 Msa0389580:intron 25.0%
! TGTATTCTTAGAAAGTAGTT+TGG + chr3_1:94522859-94522878 Msa0389580:intron 25.0%
!! TGTGAATTTAAAACCTTCAT+TGG + chr3_1:94523066-94523085 Msa0389580:intron 25.0%
! TGTCTATTGAACATTATAAC+TGG + chr3_1:94523197-94523216 Msa0389580:intron 25.0%
! TTCAATTGGCAAGAATTAAT+GGG + chr3_1:94523346-94523365 Msa0389580:intron 25.0%
! TTAGTAACTGAACAATCATA+TGG - chr3_1:94523425-94523444 None:intergenic 25.0%
! GTTAATTTCCTAAGAATCAA+AGG + chr3_1:94523463-94523482 Msa0389580:intron 25.0%
!!! AAATAAAACAAGTTTCTGGT+TGG + chr3_1:94523659-94523678 Msa0389580:intron 25.0%
!! TTTTCTTGACTTTTGCATAT+TGG + chr3_1:94523718-94523737 Msa0389580:intron 25.0%
!!! AGCTTTAGGAAAATATTGTT+TGG + chr3_1:94523742-94523761 Msa0389580:intron 25.0%
!! TATTGATCAATTTTTCCTCA+TGG + chr3_1:94523804-94523823 Msa0389580:intron 25.0%
!! CAAGGAACTTGATTTTATTA+TGG + chr3_1:94524009-94524028 Msa0389580:five_prime_UTR 25.0%
!! TTGATTTTATTATGGAACAC+AGG + chr3_1:94524017-94524036 Msa0389580:five_prime_UTR 25.0%
!! ATCCTTTTCATTGAAAACAT+GGG - chr3_1:94524307-94524326 None:intergenic 25.0%
! ATCAATAATAAGTACCTCTA+TGG - chr3_1:94524356-94524375 None:intergenic 25.0%
! CAAGATAATTATTTCCACAT+TGG - chr3_1:94524437-94524456 None:intergenic 25.0%
!!! TATTTTCAGAAGTACGATAT+AGG - chr3_1:94524508-94524527 None:intergenic 25.0%
!!! TGTTACCAAAAAGTTGTTTT+CGG + chr3_1:94524659-94524678 Msa0389580:intron 25.0%
! TTGTTACTCTGTTTGTATAA+GGG + chr3_1:94524730-94524749 Msa0389580:intron 25.0%
!!! AGAATTATCGTCTTATTTTC+TGG + chr3_1:94524795-94524814 Msa0389580:intron 25.0%
!!! GAATTATCGTCTTATTTTCT+GGG + chr3_1:94524796-94524815 Msa0389580:intron 25.0%
!!! AATTATCGTCTTATTTTCTG+GGG + chr3_1:94524797-94524816 Msa0389580:intron 25.0%
! TTAGTCCTGATATAAATATC+AGG - chr3_1:94524952-94524971 None:intergenic 25.0%
!! TACCAACTTTTTAGATAAGA+GGG - chr3_1:94525283-94525302 None:intergenic 25.0%
!! TTACCAACTTTTTAGATAAG+AGG - chr3_1:94525284-94525303 None:intergenic 25.0%
!!! TTCTGTTTTCTAGTATTTGT+TGG - chr3_1:94525983-94526002 None:intergenic 25.0%
!!! CTTCTATATTTTTGGTTTGT+TGG + chr3_1:94526148-94526167 Msa0389580:intron 25.0%
! AACAAACTTCATGCAAATAA+CGG - chr3_1:94526522-94526541 None:intergenic 25.0%
!! TGTTTTCTAATGTATTGAAG+TGG + chr3_1:94526744-94526763 Msa0389580:intron 25.0%
! CTAAGTTCAAATATTTGTCA+TGG + chr3_1:94527095-94527114 Msa0389580:intron 25.0%
! TAACTCGTGAAATTGAAATT+CGG + chr3_1:94527290-94527309 Msa0389580:CDS 25.0%
AAAAAAATTGAAGTGACCTC+TGG - chr3_1:94518492-94518511 None:intergenic 30.0%
TGTTGAGAAAGAGACAAAAT+GGG - chr3_1:94518651-94518670 None:intergenic 30.0%
CCATAGATTTGAAGATTGAA+AGG - chr3_1:94518904-94518923 None:intergenic 30.0%
CCTTTCAATCTTCAAATCTA+TGG + chr3_1:94518901-94518920 Msa0389580:intron 30.0%
GCCTCATATAAGTGTTATAT+AGG - chr3_1:94519342-94519361 None:intergenic 30.0%
GTGAAAAATGTTGATCAAAG+AGG + chr3_1:94519436-94519455 Msa0389580:intron 30.0%
GAAAAATGTTGATCAAAGAG+GGG + chr3_1:94519438-94519457 Msa0389580:intron 30.0%
ACCGCTAATGTAATTAACAT+AGG - chr3_1:94519662-94519681 None:intergenic 30.0%
!! GCTATTTTACTGCATTTGTT+TGG + chr3_1:94519825-94519844 Msa0389580:intron 30.0%
!! AATAAATGTGGAGTATTGTG+TGG + chr3_1:94519863-94519882 Msa0389580:intron 30.0%
!! TTTAGTCTTATTCTAGGTCT+TGG + chr3_1:94520058-94520077 Msa0389580:intron 30.0%
ATTCTATTGTGTGGTCTAAT+TGG + chr3_1:94520122-94520141 Msa0389580:intron 30.0%
CCCGAAAGATAAAATCATTA+TGG - chr3_1:94520153-94520172 None:intergenic 30.0%
!!! TAGTTTTTAGGTAGACATTC+TGG + chr3_1:94520228-94520247 Msa0389580:intron 30.0%
AACATGTGAGTTGTCTTTAT+TGG + chr3_1:94520310-94520329 Msa0389580:intron 30.0%
ACATGTGAGTTGTCTTTATT+GGG + chr3_1:94520311-94520330 Msa0389580:intron 30.0%
AAAGCAAAAACAATCAAAGC+CGG - chr3_1:94520432-94520451 None:intergenic 30.0%
!! TGTTCTTGTTTGATTTTTGG+TGG + chr3_1:94520452-94520471 Msa0389580:intron 30.0%
AAAACGAAATACAATAGCTG+AGG - chr3_1:94520509-94520528 None:intergenic 30.0%
TTATATGAGTCTTCCAATCT+CGG + chr3_1:94520714-94520733 Msa0389580:five_prime_UTR 30.0%
ATTCTTCTACATGTAACTTG+TGG - chr3_1:94520740-94520759 None:intergenic 30.0%
ACAAGTTACATGTAGAAGAA+TGG + chr3_1:94520739-94520758 Msa0389580:five_prime_UTR 30.0%
CAAGTTACATGTAGAAGAAT+GGG + chr3_1:94520740-94520759 Msa0389580:five_prime_UTR 30.0%
CTTATGATAACAATGCAGTT+AGG + chr3_1:94520783-94520802 Msa0389580:five_prime_UTR 30.0%
TACTGTACTACTAACTACTA+AGG - chr3_1:94521086-94521105 None:intergenic 30.0%
GTAGTACAGTAGTACTTATA+AGG + chr3_1:94521095-94521114 Msa0389580:intron 30.0%
ACAGTAGTACTTATAAGGTT+TGG + chr3_1:94521100-94521119 Msa0389580:intron 30.0%
CAGTAGTACTTATAAGGTTT+GGG + chr3_1:94521101-94521120 Msa0389580:intron 30.0%
!! CAAAATTGGTTTGTAAGGTA+AGG - chr3_1:94521131-94521150 None:intergenic 30.0%
!! CAGTACAAAATTGGTTTGTA+AGG - chr3_1:94521136-94521155 None:intergenic 30.0%
CTAACTCATCAGTACAAAAT+TGG - chr3_1:94521145-94521164 None:intergenic 30.0%
! TTTGTACTGATGAGTTAGTT+AGG + chr3_1:94521147-94521166 Msa0389580:intron 30.0%
ATACCAAAGTCTTGGTATAT+TGG - chr3_1:94521219-94521238 None:intergenic 30.0%
!! GTTATTTCGAGCAATTTTGA+AGG + chr3_1:94521405-94521424 Msa0389580:intron 30.0%
!!! GATCATTTGTTTTAGCATTG+AGG + chr3_1:94521427-94521446 Msa0389580:intron 30.0%
! CTAATAATTCTGGCTAGAAA+AGG - chr3_1:94521456-94521475 None:intergenic 30.0%
!! GTAGAAGTATTATATCGACT+AGG + chr3_1:94521506-94521525 Msa0389580:intron 30.0%
CTTAACTTTCAATTCCTTTG+AGG - chr3_1:94521574-94521593 None:intergenic 30.0%
ACAGTTACAAGAATATTTGC+AGG - chr3_1:94521739-94521758 None:intergenic 30.0%
GCATCAAAGATACATTAGAT+TGG - chr3_1:94521842-94521861 None:intergenic 30.0%
! AAGTCAGATGTATACAGTTT+TGG + chr3_1:94522053-94522072 Msa0389580:five_prime_UTR 30.0%
! AGTCAGATGTATACAGTTTT+GGG + chr3_1:94522054-94522073 Msa0389580:five_prime_UTR 30.0%
GTATATGAAACAGATACAAG+AGG + chr3_1:94522696-94522715 Msa0389580:intron 30.0%
TCATTAGTTACAGAACTCTA+TGG + chr3_1:94522814-94522833 Msa0389580:intron 30.0%
TGTGGAAAAGATAATATCAG+AGG - chr3_1:94522904-94522923 None:intergenic 30.0%
!!! AGTCTATCTTTTTTGTGTGT+AGG + chr3_1:94523155-94523174 Msa0389580:intron 30.0%
!!! GTCTATCTTTTTTGTGTGTA+GGG + chr3_1:94523156-94523175 Msa0389580:intron 30.0%
!! TGTTTTTCAGTCTTTACATG+CGG - chr3_1:94523255-94523274 None:intergenic 30.0%
GTTCAATTGGCAAGAATTAA+TGG + chr3_1:94523345-94523364 Msa0389580:intron 30.0%
TCAATTGGCAAGAATTAATG+GGG + chr3_1:94523347-94523366 Msa0389580:intron 30.0%
! TTTTGTTCCTGAGAGAAAAA+GGG + chr3_1:94523375-94523394 Msa0389580:intron 30.0%
AGGAAATTAACTCATTCCAA+TGG - chr3_1:94523454-94523473 None:intergenic 30.0%
TATCCAACTAATTGAGCTTT+AGG + chr3_1:94523576-94523595 Msa0389580:intron 30.0%
TTGATGCAGATATAACTCAT+TGG - chr3_1:94523640-94523659 None:intergenic 30.0%
! TTTTGCATATTGGAAGCTTT+AGG + chr3_1:94523728-94523747 Msa0389580:intron 30.0%
ATCATCGATACTAATCTTGA+TGG - chr3_1:94523935-94523954 None:intergenic 30.0%
! TTTTATTATGGAACACAGGA+AGG + chr3_1:94524021-94524040 Msa0389580:five_prime_UTR 30.0%
!!! CTGATTTTGGTTTAAGAACA+TGG + chr3_1:94524175-94524194 Msa0389580:five_prime_UTR 30.0%
! TCCTTTTCATTGAAAACATG+GGG - chr3_1:94524306-94524325 None:intergenic 30.0%
! CATCCTTTTCATTGAAAACA+TGG - chr3_1:94524308-94524327 None:intergenic 30.0%
! TATGCTTTTGGTATCTTTGA+TGG + chr3_1:94524330-94524349 Msa0389580:CDS 30.0%
GAAGAAATAGTAATCCAATG+TGG + chr3_1:94524420-94524439 Msa0389580:intron 30.0%
!! AACAACTTTTTGGTAACAAG+AGG - chr3_1:94524657-94524676 None:intergenic 30.0%
TTAGATGAATGTATATCACG+TGG + chr3_1:94524688-94524707 Msa0389580:intron 30.0%
GTTGTTACTCTGTTTGTATA+AGG + chr3_1:94524729-94524748 Msa0389580:intron 30.0%
GCACATAATCATGATATTTG+AGG - chr3_1:94524851-94524870 None:intergenic 30.0%
GATTATGTGCTAGAAAGTAA+TGG + chr3_1:94524861-94524880 Msa0389580:intron 30.0%
TCGATCCTGATATTTATATC+AGG + chr3_1:94524944-94524963 Msa0389580:intron 30.0%
GACAAGCTAGTTAAAATAAC+AGG + chr3_1:94524999-94525018 Msa0389580:intron 30.0%
AACACCAGATCATTTCTATT+AGG + chr3_1:94525099-94525118 Msa0389580:intron 30.0%
ATGTCCTAATAGAAATGATC+TGG - chr3_1:94525106-94525125 None:intergenic 30.0%
AGCATAATTGTTACATATGC+AGG + chr3_1:94525141-94525160 Msa0389580:intron 30.0%
!!! TTTGCAAACTCTTGGTTTTA+CGG + chr3_1:94525206-94525225 Msa0389580:CDS 30.0%
TAAGAGGGAAAGAAATAGTA+AGG - chr3_1:94525268-94525287 None:intergenic 30.0%
TTCCCTCTTATCTAAAAAGT+TGG + chr3_1:94525278-94525297 Msa0389580:intron 30.0%
! AAGCTATTTGTTGCTAATAG+TGG + chr3_1:94525471-94525490 Msa0389580:CDS 30.0%
TGTGATTATGATTCACTTAG+TGG + chr3_1:94525914-94525933 Msa0389580:intron 30.0%
!! AATTGACTGTTACTTTACAC+AGG + chr3_1:94526379-94526398 Msa0389580:intron 30.0%
CGGATAAAATAAGTTGTCAT+TGG + chr3_1:94526599-94526618 Msa0389580:intron 30.0%
ATTGTATCCTCATATCACTA+TGG + chr3_1:94526792-94526811 Msa0389580:intron 30.0%
TCATAACCCAATCATCATAA+TGG - chr3_1:94526841-94526860 None:intergenic 30.0%
! AAGATGATTGATTTAGGTCA+TGG + chr3_1:94526863-94526882 Msa0389580:intron 30.0%
AATAAAGGACACAGTTAAAG+AGG + chr3_1:94526935-94526954 Msa0389580:CDS 30.0%
CAAATTCTGGACAAAAAGTT+TGG - chr3_1:94527176-94527195 None:intergenic 30.0%
AACTCGTGAAATTGAAATTC+GGG + chr3_1:94527291-94527310 Msa0389580:CDS 30.0%
GAGAAGAAGAAGAAGAAGAA+TGG + chr3_1:94518358-94518377 Msa0389580:five_prime_UTR 35.0%
AGAAGAAGAAGAAGAATGGT+AGG + chr3_1:94518362-94518381 Msa0389580:five_prime_UTR 35.0%
TTGAACCTAACACTTGCATT+AGG + chr3_1:94518396-94518415 Msa0389580:five_prime_UTR 35.0%
TGAACCTAACACTTGCATTA+GGG + chr3_1:94518397-94518416 Msa0389580:five_prime_UTR 35.0%
AAAAGAAGAGAGTAAGAGGA+AGG - chr3_1:94518461-94518480 None:intergenic 35.0%
AGGAAAAAGAAGAGAGTAAG+AGG - chr3_1:94518465-94518484 None:intergenic 35.0%
!! GCTGAAAGTGTTGTTTATGA+AGG + chr3_1:94518591-94518610 Msa0389580:five_prime_UTR 35.0%
!! GTTTATGAAGGCACTTTGAA+TGG + chr3_1:94518603-94518622 Msa0389580:five_prime_UTR 35.0%
GTGTTGAGAAAGAGACAAAA+TGG - chr3_1:94518652-94518671 None:intergenic 35.0%
AGACAACTCAGATAAATGTC+TGG + chr3_1:94519367-94519386 Msa0389580:intron 35.0%
! TTTTTCTCTTCTTCCACACA+CGG + chr3_1:94519392-94519411 Msa0389580:intron 35.0%
AAAATACAAGAGGTAACCCA+GGG - chr3_1:94519912-94519931 None:intergenic 35.0%
! GTTACCTCTTGTATTTTCTG+TGG + chr3_1:94519915-94519934 Msa0389580:intron 35.0%
ACACGTAACAAAAAGATGAC+AGG - chr3_1:94519958-94519977 None:intergenic 35.0%
CTCGTCTTACATTCAGATTT+GGG + chr3_1:94520028-94520047 Msa0389580:intron 35.0%
CAATAGAATGTCAGACGAAA+AGG - chr3_1:94520111-94520130 None:intergenic 35.0%
! ATGATTTTATCTTTCGGGGA+AGG + chr3_1:94520155-94520174 Msa0389580:intron 35.0%
! AAATGGAACCTGATTTGTGT+TGG + chr3_1:94520277-94520296 Msa0389580:intron 35.0%
AGTACAAGATGTACTCAAGA+TGG - chr3_1:94520486-94520505 None:intergenic 35.0%
!! TGTGAAGTATTGTGAGTTTG+AGG + chr3_1:94520582-94520601 Msa0389580:intron 35.0%
!! ATAATTGGGTGGTTTTGCAT+GGG - chr3_1:94520679-94520698 None:intergenic 35.0%
!! TATAATTGGGTGGTTTTGCA+TGG - chr3_1:94520680-94520699 None:intergenic 35.0%
CATGTGATAATTACTTTGCC+TGG + chr3_1:94520854-94520873 Msa0389580:intron 35.0%
!! AGTGTTGTTTGGTCAAATCA+AGG + chr3_1:94520910-94520929 Msa0389580:intron 35.0%
TCACCAATATACCAAGACTT+TGG + chr3_1:94521213-94521232 Msa0389580:intron 35.0%
CCAAAGAAATACCAAAGTCT+TGG - chr3_1:94521227-94521246 None:intergenic 35.0%
CCAAGACTTTGGTATTTCTT+TGG + chr3_1:94521224-94521243 Msa0389580:intron 35.0%
TCGTGGGTAGTAGATTAATA+TGG - chr3_1:94521335-94521354 None:intergenic 35.0%
ATTAATCTACTACCCACGAT+AGG + chr3_1:94521336-94521355 Msa0389580:intron 35.0%
ACAATGGTTGAAAGAGTTGA+AGG - chr3_1:94521541-94521560 None:intergenic 35.0%
TTGCAATATCTGCATAACCT+CGG + chr3_1:94521691-94521710 Msa0389580:five_prime_UTR 35.0%
! TTTTTGTGAAAACCACCAGT+AGG - chr3_1:94521969-94521988 None:intergenic 35.0%
GGTTGGAACACTTGTTTATA+TGG + chr3_1:94521995-94522014 Msa0389580:five_prime_UTR 35.0%
GGCACCTGAAATATTAAGAA+AGG + chr3_1:94522016-94522035 Msa0389580:five_prime_UTR 35.0%
TGTTAGTTATCTGCCATAAG+AGG + chr3_1:94522176-94522195 Msa0389580:intron 35.0%
TTCATCATTGTTGTCAATGG+TGG + chr3_1:94522376-94522395 Msa0389580:intron 35.0%
ACAAATTGCTTATGGTGTCT+GGG + chr3_1:94522443-94522462 Msa0389580:intron 35.0%
TTGTAGTTAAACAGAAGCCA+TGG - chr3_1:94522493-94522512 None:intergenic 35.0%
ACACTTCACCCATACATATA+CGG + chr3_1:94522624-94522643 Msa0389580:intron 35.0%
AGGGTTATCCGTATATGTAT+GGG - chr3_1:94522635-94522654 None:intergenic 35.0%
AAGGGTTATCCGTATATGTA+TGG - chr3_1:94522636-94522655 None:intergenic 35.0%
ATACATATACGGATAACCCT+TGG + chr3_1:94522635-94522654 Msa0389580:intron 35.0%
ACATTTCTCACGTTCCTTAA+AGG + chr3_1:94523299-94523318 Msa0389580:intron 35.0%
CATTTCTCACGTTCCTTAAA+GGG + chr3_1:94523300-94523319 Msa0389580:intron 35.0%
ATTTCTCACGTTCCTTAAAG+GGG + chr3_1:94523301-94523320 Msa0389580:intron 35.0%
TGCCAATCTGAATGTTCAAT+TGG + chr3_1:94523332-94523351 Msa0389580:intron 35.0%
TGCCAATTGAACATTCAGAT+TGG - chr3_1:94523337-94523356 None:intergenic 35.0%
! CTTTTGTTCCTGAGAGAAAA+AGG + chr3_1:94523374-94523393 Msa0389580:intron 35.0%
AGAAAAAGGGAGATGTTTCA+TGG + chr3_1:94523388-94523407 Msa0389580:intron 35.0%
GAAAAAGGGAGATGTTTCAT+GGG + chr3_1:94523389-94523408 Msa0389580:intron 35.0%
CAGTTACTAATTGAAGCCAT+TGG + chr3_1:94523435-94523454 Msa0389580:intron 35.0%
CTATACTTCTCAAGTTCAAG+TGG - chr3_1:94523505-94523524 None:intergenic 35.0%
! CACTTGAACTTGAGAAGTAT+AGG + chr3_1:94523503-94523522 Msa0389580:intron 35.0%
! TGAACTTGAGAAGTATAGGT+TGG + chr3_1:94523507-94523526 Msa0389580:intron 35.0%
TGACCTAAAGCTCAATTAGT+TGG - chr3_1:94523582-94523601 None:intergenic 35.0%
!! TCAAAGGAAGGTCTACTTTT+AGG - chr3_1:94523980-94523999 None:intergenic 35.0%
TTGACAATCTCATCAAAGGA+AGG - chr3_1:94523992-94524011 None:intergenic 35.0%
TTCCTTTGATGAGATTGTCA+AGG + chr3_1:94523991-94524010 Msa0389580:five_prime_UTR 35.0%
TTCCTTGACAATCTCATCAA+AGG - chr3_1:94523996-94524015 None:intergenic 35.0%
!! CTTATCAAGAGAGTATTAGC+TGG + chr3_1:94524110-94524129 Msa0389580:five_prime_UTR 35.0%
! GAAAAGGATGTCTATGCTTT+TGG + chr3_1:94524318-94524337 Msa0389580:CDS 35.0%
TCGAATAAGCAACGTAAGTA+TGG + chr3_1:94524550-94524569 Msa0389580:intron 35.0%
ACAAAGAGAGGAGACATAAA+GGG - chr3_1:94524618-94524637 None:intergenic 35.0%
AACAAAGAGAGGAGACATAA+AGG - chr3_1:94524619-94524638 None:intergenic 35.0%
! TCTGACCGAAAACAACTTTT+TGG - chr3_1:94524667-94524686 None:intergenic 35.0%
! TCTGGTGTTAGAATATGTCT+TGG - chr3_1:94525088-94525107 None:intergenic 35.0%
!!! TTGCAAACTCTTGGTTTTAC+GGG + chr3_1:94525207-94525226 Msa0389580:CDS 35.0%
CAATTGCTGCTATTGTAAGT+GGG + chr3_1:94525445-94525464 Msa0389580:CDS 35.0%
TTGCTAATAGTGGTGATTGT+CGG + chr3_1:94525481-94525500 Msa0389580:CDS 35.0%
TATCAACTTGCCAATGAACT+TGG - chr3_1:94525710-94525729 None:intergenic 35.0%
TATCATGTGTTTGGAAACTC+TGG + chr3_1:94525787-94525806 Msa0389580:intron 35.0%
GAACAGTTACAGAACATTCT+AGG + chr3_1:94526000-94526019 Msa0389580:intron 35.0%
!!! TTTTGGTTTGTTGGATGTGA+AGG + chr3_1:94526157-94526176 Msa0389580:intron 35.0%
!! TTTGGTTTGTTGGATGTGAA+GGG + chr3_1:94526158-94526177 Msa0389580:intron 35.0%
AAATTCATCCTCTGCAAGTA+AGG - chr3_1:94526474-94526493 None:intergenic 35.0%
!! GTGGCTTTGATGAAAGATTA+AGG + chr3_1:94526763-94526782 Msa0389580:intron 35.0%
GAACCTAACACTTGCATTAG+GGG + chr3_1:94518398-94518417 Msa0389580:five_prime_UTR 40.0%
! CTTCTTTTTCCTATTGCCAG+AGG + chr3_1:94518473-94518492 Msa0389580:five_prime_UTR 40.0%
!! TAGAGGTGTTTGTGCTTCAT+AGG - chr3_1:94519183-94519202 None:intergenic 40.0%
TATGAAGCACAAACACCTCT+AGG + chr3_1:94519182-94519201 Msa0389580:intron 40.0%
ATTAGGCATGTCACAGTGTT+CGG + chr3_1:94519205-94519224 Msa0389580:intron 40.0%
TTCTTTACTTGGACGCTTCT+TGG + chr3_1:94519302-94519321 Msa0389580:intron 40.0%
GAAAATACAAGAGGTAACCC+AGG - chr3_1:94519913-94519932 None:intergenic 40.0%
! TTGTATTTTCTGTGGTGCGT+CGG + chr3_1:94519923-94519942 Msa0389580:intron 40.0%
! ATAGAGTACTCAGGTGGATA+GGG + chr3_1:94519999-94520018 Msa0389580:intron 40.0%
CCAAATCTGAATGTAAGACG+AGG - chr3_1:94520030-94520049 None:intergenic 40.0%
CCTCGTCTTACATTCAGATT+TGG + chr3_1:94520027-94520046 Msa0389580:intron 40.0%
!! AGTCTTATTCTAGGTCTTGG+AGG + chr3_1:94520061-94520080 Msa0389580:intron 40.0%
TTATTCTAGGTCTTGGAGGT+GGG + chr3_1:94520065-94520084 Msa0389580:intron 40.0%
TCGTCTGACATTCTATTGTG+TGG + chr3_1:94520113-94520132 Msa0389580:intron 40.0%
! ATTTTATCTTTCGGGGAAGG+TGG + chr3_1:94520158-94520177 Msa0389580:intron 40.0%
ACAAAATCAAGTTCACCTCG+TGG + chr3_1:94520202-94520221 Msa0389580:intron 40.0%
! ACCTCGTGGAAGTAGTTTTT+AGG + chr3_1:94520216-94520235 Msa0389580:intron 40.0%
ACCTAAAAACTACTTCCACG+AGG - chr3_1:94520220-94520239 None:intergenic 40.0%
TAGCAGTACCAACACAAATC+AGG - chr3_1:94520288-94520307 None:intergenic 40.0%
TTATTGGGACCTTGTGACTT+TGG + chr3_1:94520326-94520345 Msa0389580:intron 40.0%
TATTGGGACCTTGTGACTTT+GGG + chr3_1:94520327-94520346 Msa0389580:intron 40.0%
!!! CAGGTGCTTTTATTTTGGTC+CGG + chr3_1:94520410-94520429 Msa0389580:intron 40.0%
! CAATTAGTGTTGCTATTCCC+GGG - chr3_1:94520653-94520672 None:intergenic 40.0%
! GCAATTAGTGTTGCTATTCC+CGG - chr3_1:94520654-94520673 None:intergenic 40.0%
TATCATAAGCGCGTCATTGA+CGG - chr3_1:94520772-94520791 None:intergenic 40.0%
ATGAAGGCGAAAGTTTAACC+AGG - chr3_1:94520875-94520894 None:intergenic 40.0%
AAGCGGATCTCCGATAAATA+TGG - chr3_1:94520963-94520982 None:intergenic 40.0%
AGGAAGCAATGAAGATGCTA+GGG - chr3_1:94521000-94521019 None:intergenic 40.0%
AAGGAAGCAATGAAGATGCT+AGG - chr3_1:94521001-94521020 None:intergenic 40.0%
TTTGACACCTTGACTGTGTT+GGG + chr3_1:94521019-94521038 Msa0389580:intron 40.0%
GAGGTTATGCAGATATTGCA+AGG - chr3_1:94521692-94521711 None:intergenic 40.0%
TGCAATATCTGCATAACCTC+GGG + chr3_1:94521692-94521711 Msa0389580:five_prime_UTR 40.0%
AAACCAAAATCTGTGAGGTG+TGG - chr3_1:94521885-94521904 None:intergenic 40.0%
!!! ACACCTCACAGATTTTGGTT+TGG + chr3_1:94521884-94521903 Msa0389580:five_prime_UTR 40.0%
AGGGAGTTTCTCTTGAGAAT+TGG + chr3_1:94521928-94521947 Msa0389580:five_prime_UTR 40.0%
CTTGAGAATTGGAAGTCTTC+TGG + chr3_1:94521939-94521958 Msa0389580:five_prime_UTR 40.0%
! AAGTCTTCTGGAAAACCTAC+TGG + chr3_1:94521951-94521970 Msa0389580:five_prime_UTR 40.0%
GTTGCAACTAGTTCCTCTTA+TGG - chr3_1:94522192-94522211 None:intergenic 40.0%
! TTGTTGTCAATGGTGGAAGA+AGG + chr3_1:94522383-94522402 Msa0389580:intron 40.0%
TGGAAGAAGGTTTATGCCTA+CGG + chr3_1:94522396-94522415 Msa0389580:intron 40.0%
CACAAATTGCTTATGGTGTC+TGG + chr3_1:94522442-94522461 Msa0389580:intron 40.0%
TAGTTAAACAGAAGCCATGG+CGG - chr3_1:94522490-94522509 None:intergenic 40.0%
GTCAACCTAGTTATGCCAAA+AGG + chr3_1:94522572-94522591 Msa0389580:intron 40.0%
GCTTGCTTCGTGTATTTGTT+TGG + chr3_1:94522597-94522616 Msa0389580:intron 40.0%
! GCTTAAAGTTGGTTGGAGTT+GGG + chr3_1:94522659-94522678 Msa0389580:intron 40.0%
!! CTTAGAAAGTAGTTTGGTGC+TGG + chr3_1:94522865-94522884 Msa0389580:intron 40.0%
GAGATATACTCGAACTCATG+TGG - chr3_1:94522922-94522941 None:intergenic 40.0%
CACTGCAACATATCCAATGA+AGG - chr3_1:94523082-94523101 None:intergenic 40.0%
TATATGGCACAACACCAGTA+AGG - chr3_1:94523109-94523128 None:intergenic 40.0%
TCTGCACGAAGATCAGTATA+TGG - chr3_1:94523125-94523144 None:intergenic 40.0%
! AACATCTCCCTTTTTCTCTC+AGG - chr3_1:94523385-94523404 None:intergenic 40.0%
TGAGCTTCCCTTTGATTCTT+AGG - chr3_1:94523474-94523493 None:intergenic 40.0%
! GATCAATTTTTCCTCATGGC+AGG + chr3_1:94523808-94523827 Msa0389580:intron 40.0%
! TATCGATGATACGAAAGTGC+TGG + chr3_1:94523945-94523964 Msa0389580:five_prime_UTR 40.0%
!! ATCGATGATACGAAAGTGCT+GGG + chr3_1:94523946-94523965 Msa0389580:five_prime_UTR 40.0%
! GATAAGTCTTGTCCACAAGT+TGG - chr3_1:94524096-94524115 None:intergenic 40.0%
!! ACCTCTAGCTCAACTGATTT+TGG + chr3_1:94524162-94524181 Msa0389580:five_prime_UTR 40.0%
ACCAAAATCAGTTGAGCTAG+AGG - chr3_1:94524166-94524185 None:intergenic 40.0%
AAAAGGCTCGTTGTAAGACT+CGG - chr3_1:94524202-94524221 None:intergenic 40.0%
! GCCCCATGTTTTCAATGAAA+AGG + chr3_1:94524302-94524321 Msa0389580:CDS 40.0%
CTGGATTTGGAAACAAAGAG+AGG - chr3_1:94524630-94524649 None:intergenic 40.0%
! AACAAGAGGCATACTGGATT+TGG - chr3_1:94524643-94524662 None:intergenic 40.0%
! TTTGGTAACAAGAGGCATAC+TGG - chr3_1:94524649-94524668 None:intergenic 40.0%
GTATATCACGTGGTGAACTT+TGG + chr3_1:94524698-94524717 Msa0389580:intron 40.0%
CTATCGACATGTCTCTAAAC+AGG + chr3_1:94524759-94524778 Msa0389580:intron 40.0%
TCTAAACAGGATGCATCACT+AGG + chr3_1:94524772-94524791 Msa0389580:intron 40.0%
TCAGGACTAACTAACTCTCA+TGG + chr3_1:94524962-94524981 Msa0389580:intron 40.0%
GAATATGTCTTGGCAGTGTT+TGG - chr3_1:94525078-94525097 None:intergenic 40.0%
! AGCTGCAGAGTTTTCTTCTA+GGG + chr3_1:94525170-94525189 Msa0389580:CDS 40.0%
AAATAGTAAGGCTCAGGAAG+GGG - chr3_1:94525256-94525275 None:intergenic 40.0%
GAAATAGTAAGGCTCAGGAA+GGG - chr3_1:94525257-94525276 None:intergenic 40.0%
AGAAATAGTAAGGCTCAGGA+AGG - chr3_1:94525258-94525277 None:intergenic 40.0%
GGAAAGAAATAGTAAGGCTC+AGG - chr3_1:94525262-94525281 None:intergenic 40.0%
TGAAGGCAGTATCTGTTCTA+AGG - chr3_1:94525356-94525375 None:intergenic 40.0%
ACATCTGTTGGATTTGCGAT+AGG - chr3_1:94525394-94525413 None:intergenic 40.0%
ATCCAACAGATGTATCCAGA+AGG + chr3_1:94525401-94525420 Msa0389580:CDS 40.0%
ATCCTTCTGGATACATCTGT+TGG - chr3_1:94525406-94525425 None:intergenic 40.0%
ACAGATGTATCCAGAAGGAT+TGG + chr3_1:94525406-94525425 Msa0389580:CDS 40.0%
GCAATTGCTGCTATTGTAAG+TGG + chr3_1:94525444-94525463 Msa0389580:CDS 40.0%
TGCTAATAGTGGTGATTGTC+GGG + chr3_1:94525482-94525501 Msa0389580:CDS 40.0%
! TAATCCCATTGCTCTGAGTA+AGG + chr3_1:94525523-94525542 Msa0389580:intron 40.0%
!! TTCATTGGCAAGTTGATACC+TGG + chr3_1:94525712-94525731 Msa0389580:CDS 40.0%
! CGCTTCAGGTTTGTTCAAAT+TGG + chr3_1:94525751-94525770 Msa0389580:intron 40.0%
CTGCACGTATCTTGTGAAAT+TGG + chr3_1:94525822-94525841 Msa0389580:intron 40.0%
ATCTTGTGAAATTGGAACCC+AGG + chr3_1:94525830-94525849 Msa0389580:intron 40.0%
TCTTGTGAAATTGGAACCCA+GGG + chr3_1:94525831-94525850 Msa0389580:intron 40.0%
! ATGTGAAGGGTGATTTGCAT+AGG + chr3_1:94526171-94526190 Msa0389580:intron 40.0%
! TGTGAAGGGTGATTTGCATA+GGG + chr3_1:94526172-94526191 Msa0389580:intron 40.0%
ACACAGGTTACTCGTTCTAT+CGG + chr3_1:94526395-94526414 Msa0389580:intron 40.0%
ACTTGCAGAGGATGAATTTC+TGG + chr3_1:94526475-94526494 Msa0389580:CDS 40.0%
ACAAGCACCATAGTGATATG+AGG - chr3_1:94526802-94526821 None:intergenic 40.0%
! GTGATTGGTTGGACAAATTC+TGG - chr3_1:94527189-94527208 None:intergenic 40.0%
CAGCATGAATTGTGATTGGT+TGG - chr3_1:94527200-94527219 None:intergenic 40.0%
CAACCAATCACAATTCATGC+TGG + chr3_1:94527198-94527217 Msa0389580:CDS 40.0%
! TGTTACACTACCCGTTTTGT+GGG - chr3_1:94527224-94527243 None:intergenic 40.0%
! TTGTTACACTACCCGTTTTG+TGG - chr3_1:94527225-94527244 None:intergenic 40.0%
! AGTCAACAAAAATGGCTCTG+TGG + chr3_1:94527252-94527271 Msa0389580:CDS 40.0%
CAACCCCTAATGCAAGTGTT+AGG - chr3_1:94518404-94518423 None:intergenic 45.0%
GAAGAGAGTAAGAGGAAGGA+GGG - chr3_1:94518457-94518476 None:intergenic 45.0%
AGAAGAGAGTAAGAGGAAGG+AGG - chr3_1:94518458-94518477 None:intergenic 45.0%
TTGAAGTGACCTCTGGCAAT+AGG - chr3_1:94518485-94518504 None:intergenic 45.0%
ATGAGTGTCCGTGCTTCATA+GGG - chr3_1:94519115-94519134 None:intergenic 45.0%
TATGAAGCACGGACACTCAT+CGG + chr3_1:94519115-94519134 Msa0389580:intron 45.0%
!! GCACAAACACCTCTAGGATT+AGG + chr3_1:94519188-94519207 Msa0389580:intron 45.0%
TGTGACATGCCTAATCCTAG+AGG - chr3_1:94519200-94519219 None:intergenic 45.0%
ATGTGTCGTACGAGTGTCAT+AGG - chr3_1:94519252-94519271 None:intergenic 45.0%
ACTCTTGAATCTACCGTGTG+TGG - chr3_1:94519408-94519427 None:intergenic 45.0%
!! GGAGTATTGTGTGGTCTATC+TGG + chr3_1:94519872-94519891 Msa0389580:intron 45.0%
CGCACCACAGAAAATACAAG+AGG - chr3_1:94519922-94519941 None:intergenic 45.0%
ATCCACACAGGACTAACTAG+CGG - chr3_1:94519981-94520000 None:intergenic 45.0%
! GATAGAGTACTCAGGTGGAT+AGG + chr3_1:94519998-94520017 Msa0389580:intron 45.0%
CTTATTCTAGGTCTTGGAGG+TGG + chr3_1:94520064-94520083 Msa0389580:intron 45.0%
TTCCATTTCCCACTCGTAGT+AGG - chr3_1:94520265-94520284 None:intergenic 45.0%
!! GTGGCCAGGTGCTTTTATTT+TGG + chr3_1:94520405-94520424 Msa0389580:intron 45.0%
!! CGGACCAAAATAAAAGCACC+TGG - chr3_1:94520412-94520431 None:intergenic 45.0%
ATGTAGCAAGCTAGATCACC+CGG + chr3_1:94520632-94520651 Msa0389580:intron 45.0%
! ATGTAACTTGTGGCCGAGAT+TGG - chr3_1:94520730-94520749 None:intergenic 45.0%
GGAAGCAATGAAGATGCTAG+GGG - chr3_1:94520999-94521018 None:intergenic 45.0%
! CAACACAGTCAAGGTGTCAA+AGG - chr3_1:94521020-94521039 None:intergenic 45.0%
CTTTGACACCTTGACTGTGT+TGG + chr3_1:94521018-94521037 Msa0389580:intron 45.0%
TCATATCTCTGCGTGATGTG+GGG - chr3_1:94521063-94521082 None:intergenic 45.0%
GTCATATCTCTGCGTGATGT+GGG - chr3_1:94521064-94521083 None:intergenic 45.0%
! TGTCCACACCTCACAGATTT+TGG + chr3_1:94521879-94521898 Msa0389580:five_prime_UTR 45.0%
CAGCCAAACCAAAATCTGTG+AGG - chr3_1:94521890-94521909 None:intergenic 45.0%
! TCTTCTGGAAAACCTACTGG+TGG + chr3_1:94521954-94521973 Msa0389580:five_prime_UTR 45.0%
GAGATAGTGTAGCAGAACAG+TGG + chr3_1:94522304-94522323 Msa0389580:intron 45.0%
TAGTGTAGCAGAACAGTGGA+TGG + chr3_1:94522308-94522327 Msa0389580:intron 45.0%
! AGCTGCCTTTTGGCATAACT+AGG - chr3_1:94522580-94522599 None:intergenic 45.0%
TAACCCTTGGCGCTTAAAGT+TGG + chr3_1:94522648-94522667 Msa0389580:intron 45.0%
CAACCAACTTTAAGCGCCAA+GGG - chr3_1:94522654-94522673 None:intergenic 45.0%
! CGCTTAAAGTTGGTTGGAGT+TGG + chr3_1:94522658-94522677 Msa0389580:intron 45.0%
TGTTGCAGTGAACTCCTTAC+TGG + chr3_1:94523092-94523111 Msa0389580:intron 45.0%
TGATTGTGAAGTGTGGAAGC+TGG + chr3_1:94523531-94523550 Msa0389580:intron 45.0%
!! TGTTTCCGATGGATTACGAC+CGG + chr3_1:94523883-94523902 Msa0389580:five_prime_UTR 45.0%
GGAACACAGGAAGGTAAAGA+AGG + chr3_1:94524030-94524049 Msa0389580:five_prime_UTR 45.0%
ACACAGGAAGGTAAAGAAGG+TGG + chr3_1:94524033-94524052 Msa0389580:five_prime_UTR 45.0%
TGGTCAACAGGCAAGTTACA+AGG - chr3_1:94524076-94524095 None:intergenic 45.0%
!! TTGTCCACAAGTTGGTCAAC+AGG - chr3_1:94524088-94524107 None:intergenic 45.0%
!! AGTTGAGCTAGAGGTATTCC+TGG - chr3_1:94524157-94524176 None:intergenic 45.0%
! AGTACTGGACGGTATGCAAA+AGG - chr3_1:94524219-94524238 None:intergenic 45.0%
ATACCGTCCAGTACTGTCTT+GGG + chr3_1:94524224-94524243 Msa0389580:five_prime_UTR 45.0%
TAAGATCCCCAAGACAGTAC+TGG - chr3_1:94524234-94524253 None:intergenic 45.0%
! TGGGGATCTTATGCTACTTG+TGG + chr3_1:94524243-94524262 Msa0389580:five_prime_UTR 45.0%
! GGGGATCTTATGCTACTTGT+GGG + chr3_1:94524244-94524263 Msa0389580:five_prime_UTR 45.0%
! CTTATGCTACTTGTGGGAGA+CGG + chr3_1:94524250-94524269 Msa0389580:five_prime_UTR 45.0%
! TTATGCTACTTGTGGGAGAC+GGG + chr3_1:94524251-94524270 Msa0389580:five_prime_UTR 45.0%
! GGTATCTTTGATGGCCATAG+AGG + chr3_1:94524339-94524358 Msa0389580:CDS 45.0%
! CAGCTGCAGAGTTTTCTTCT+AGG + chr3_1:94525169-94525188 Msa0389580:CDS 45.0%
CCAAGAGTTTGCAAAACTGC+TGG - chr3_1:94525201-94525220 None:intergenic 45.0%
! CCAGCAGTTTTGCAAACTCT+TGG + chr3_1:94525198-94525217 Msa0389580:CDS 45.0%
!!! AAACTCTTGGTTTTACGGGC+AGG + chr3_1:94525211-94525230 Msa0389580:CDS 45.0%
AATAGTAAGGCTCAGGAAGG+GGG - chr3_1:94525255-94525274 None:intergenic 45.0%
! GGAAGCAAGCTCTTTTCTGA+AGG - chr3_1:94525373-94525392 None:intergenic 45.0%
CTCACCTTACTCAGAGCAAT+GGG - chr3_1:94525530-94525549 None:intergenic 45.0%
! AGAGAGCGTGTTATTCGTCA+AGG + chr3_1:94525681-94525700 Msa0389580:CDS 45.0%
! GAGAGCGTGTTATTCGTCAA+GGG + chr3_1:94525682-94525701 Msa0389580:CDS 45.0%
! AGAGCGTGTTATTCGTCAAG+GGG + chr3_1:94525683-94525702 Msa0389580:CDS 45.0%
!! CAAGTTGATACCTGGAGAGT+TGG + chr3_1:94525720-94525739 Msa0389580:CDS 45.0%
TTTGAACAAACCTGAAGCGC+AGG - chr3_1:94525750-94525769 None:intergenic 45.0%
GTTGGTTGCAACTGAAGTAG+TGG - chr3_1:94525965-94525984 None:intergenic 45.0%
! GTGAAGGGTGATTTGCATAG+GGG + chr3_1:94526173-94526192 Msa0389580:intron 45.0%
! AAGGTGCTCTCAGTTATCTC+AGG - chr3_1:94526455-94526474 None:intergenic 45.0%
!! CAGAGGATGAATTTCTGGTG+AGG + chr3_1:94526480-94526499 Msa0389580:intron 45.0%
ATTTAGGTCATGGCTAGCGA+TGG + chr3_1:94526873-94526892 Msa0389580:intron 45.0%
AAGGACACAGTTAAAGAGGC+AGG + chr3_1:94526939-94526958 Msa0389580:CDS 45.0%
ATTCTCTCTGCTGTCGATAC+AGG - chr3_1:94527047-94527066 None:intergenic 45.0%
ATTCATGCTGGCCCACAAAA+CGG + chr3_1:94527210-94527229 Msa0389580:CDS 45.0%
AGGGAGATGAAGGGGAATAG+AGG - chr3_1:94518438-94518457 None:intergenic 50.0%
AGAGGAAGGAGGGAGATGAA+GGG - chr3_1:94518447-94518466 None:intergenic 50.0%
AAGAGGAAGGAGGGAGATGA+AGG - chr3_1:94518448-94518467 None:intergenic 50.0%
TCGTCAGTCCCTATGAAGCA+CGG + chr3_1:94519104-94519123 Msa0389580:intron 50.0%
GATGAGTGTCCGTGCTTCAT+AGG - chr3_1:94519116-94519135 None:intergenic 50.0%
GATTAGGTGTGTCCCAGTGT+CGG + chr3_1:94519137-94519156 Msa0389580:intron 50.0%
TACTTGGACGCTTCTTGGAC+CGG + chr3_1:94519307-94519326 Msa0389580:intron 50.0%
!! GTTATATAGGTGTCGGCCAC+CGG - chr3_1:94519329-94519348 None:intergenic 50.0%
ATCCATGTCAGTGTCGTGTC+AGG + chr3_1:94519690-94519709 Msa0389580:intron 50.0%
CGCTGTCGAACTATGAAGCA+CGG - chr3_1:94519731-94519750 None:intergenic 50.0%
CCTGAGTACTCTATCCACAC+AGG - chr3_1:94519993-94520012 None:intergenic 50.0%
! CCTGTGTGGATAGAGTACTC+AGG + chr3_1:94519990-94520009 Msa0389580:intron 50.0%
! GTGTGGATAGAGTACTCAGG+TGG + chr3_1:94519993-94520012 Msa0389580:intron 50.0%
AGTACTCAGGTGGATAGGGT+GGG + chr3_1:94520003-94520022 Msa0389580:intron 50.0%
AGGTGGCTTCTGAGCATCAA+CGG + chr3_1:94520175-94520194 Msa0389580:intron 50.0%
ATTCCTGCTCCTACTACGAG+TGG + chr3_1:94520253-94520272 Msa0389580:intron 50.0%
TTCCTGCTCCTACTACGAGT+GGG + chr3_1:94520254-94520273 Msa0389580:intron 50.0%
CTCCTACTACGAGTGGGAAA+TGG + chr3_1:94520260-94520279 Msa0389580:intron 50.0%
CAGAACCACCCAAAGTCACA+AGG - chr3_1:94520338-94520357 None:intergenic 50.0%
ACAACCACACGCTTACCAAG+GGG - chr3_1:94520365-94520384 None:intergenic 50.0%
GACAACCACACGCTTACCAA+GGG - chr3_1:94520366-94520385 None:intergenic 50.0%
AGACAACCACACGCTTACCA+AGG - chr3_1:94520367-94520386 None:intergenic 50.0%
TGTAGCAAGCTAGATCACCC+GGG + chr3_1:94520633-94520652 Msa0389580:intron 50.0%
!! ATTGGGTGGTTTTGCATGGG+CGG - chr3_1:94520676-94520695 None:intergenic 50.0%
TAAGCGCGTCATTGACGGTT+GGG - chr3_1:94520767-94520786 None:intergenic 50.0%
ATAAGCGCGTCATTGACGGT+TGG - chr3_1:94520768-94520787 None:intergenic 50.0%
GGGGAGGACAGCAATTAAAG+CGG - chr3_1:94520980-94520999 None:intergenic 50.0%
AGCAATGAAGATGCTAGGGG+AGG - chr3_1:94520996-94521015 None:intergenic 50.0%
ACCTTGACTGTGTTGGGTGT+AGG + chr3_1:94521025-94521044 Msa0389580:intron 50.0%
TCCTACACCCAACACAGTCA+AGG - chr3_1:94521029-94521048 None:intergenic 50.0%
TTGACTGTGTTGGGTGTAGG+AGG + chr3_1:94521028-94521047 Msa0389580:intron 50.0%
GGTCATATCTCTGCGTGATG+TGG - chr3_1:94521065-94521084 None:intergenic 50.0%
TACTACCCACGATAGGACAG+CGG + chr3_1:94521343-94521362 Msa0389580:intron 50.0%
CATCTCTATGCAGAATCCCG+AGG - chr3_1:94521711-94521730 None:intergenic 50.0%
GGCGCTGCACAAATTGCTTA+TGG + chr3_1:94522435-94522454 Msa0389580:intron 50.0%
! ACACGAAGCAAGCTGCCTTT+TGG - chr3_1:94522590-94522609 None:intergenic 50.0%
CCAACCAACTTTAAGCGCCA+AGG - chr3_1:94522655-94522674 None:intergenic 50.0%
! CCTTGGCGCTTAAAGTTGGT+TGG + chr3_1:94522652-94522671 Msa0389580:intron 50.0%
! TGATCTTCGTGCAGAAGCAC+AGG + chr3_1:94523130-94523149 Msa0389580:five_prime_UTR 50.0%
! GGTTGGCTGATTGTGAAGTG+TGG + chr3_1:94523524-94523543 Msa0389580:intron 50.0%
!! ACAGCAGCTGTTGTTTCCGA+TGG + chr3_1:94523872-94523891 Msa0389580:five_prime_UTR 50.0%
AAGGACCGGTCGTAATCCAT+CGG - chr3_1:94523891-94523910 None:intergenic 50.0%
CTTGCCTGTTGACCAACTTG+TGG + chr3_1:94524081-94524100 Msa0389580:five_prime_UTR 50.0%
! GAGTATTAGCTGGTCTGCCA+AGG + chr3_1:94524120-94524139 Msa0389580:five_prime_UTR 50.0%
CATACCGTCCAGTACTGTCT+TGG + chr3_1:94524223-94524242 Msa0389580:five_prime_UTR 50.0%
TACCGTCCAGTACTGTCTTG+GGG + chr3_1:94524225-94524244 Msa0389580:five_prime_UTR 50.0%
! ATCCCCAAGACAGTACTGGA+CGG - chr3_1:94524230-94524249 None:intergenic 50.0%
CAGTCCTGCTAATGCACTAG+TGG + chr3_1:94525323-94525342 Msa0389580:intron 50.0%
GCTTCCACTAGTGCATTAGC+AGG - chr3_1:94525330-94525349 None:intergenic 50.0%
! ATCCAGAAGGATTGGCATCC+TGG + chr3_1:94525414-94525433 Msa0389580:CDS 50.0%
AACCAGGATGCCAATCCTTC+TGG - chr3_1:94525419-94525438 None:intergenic 50.0%
GCAGCAATTGCTGTACAACC+AGG - chr3_1:94525435-94525454 None:intergenic 50.0%
TCGGGCAATCTTATGTCGTG+CGG + chr3_1:94525500-94525519 Msa0389580:CDS 50.0%
GCTCACCTTACTCAGAGCAA+TGG - chr3_1:94525531-94525550 None:intergenic 50.0%
! GAGCGTGTTATTCGTCAAGG+GGG + chr3_1:94525684-94525703 Msa0389580:CDS 50.0%
GAGAGAAAGTCAAGCACCCT+GGG - chr3_1:94525850-94525869 None:intergenic 50.0%
! AAGGGTGATTTGCATAGGGG+AGG + chr3_1:94526176-94526195 Msa0389580:intron 50.0%
! AGGGTGATTTGCATAGGGGA+GGG + chr3_1:94526177-94526196 Msa0389580:intron 50.0%
TCAGGTTCTGCAGTTACAGC+AGG - chr3_1:94526437-94526456 None:intergenic 50.0%
!! TGAGAGCACCTTACTTGCAG+AGG + chr3_1:94526463-94526482 Msa0389580:CDS 50.0%
GTGGGATGTGATGAGCAGTT+TGG + chr3_1:94526899-94526918 Msa0389580:CDS 50.0%
!! AGGCATGTGCTCTAAGAGGT+TGG + chr3_1:94526959-94526978 Msa0389580:CDS 50.0%
!! GTGCTCTAAGAGGTTGGCTA+CGG + chr3_1:94526965-94526984 Msa0389580:CDS 50.0%
GGGCCAGCATGAATTGTGAT+TGG - chr3_1:94527204-94527223 None:intergenic 50.0%
TTCATGCTGGCCCACAAAAC+GGG + chr3_1:94527211-94527230 Msa0389580:CDS 50.0%
GGCTCTGTGGATAACACAGT+CGG + chr3_1:94527265-94527284 Msa0389580:CDS 50.0%
GCTCTGTGGATAACACAGTC+GGG + chr3_1:94527266-94527285 Msa0389580:CDS 50.0%
GAACATGCGTAGTATGCGGC+AGG + chr3_1:94518194-94518213 Msa0389580:five_prime_UTR 55.0%
GAGGAAGGAGGGAGATGAAG+GGG - chr3_1:94518446-94518465 None:intergenic 55.0%
GCACGGACACTCATCGGATT+AGG + chr3_1:94519121-94519140 Msa0389580:intron 55.0%
CACCTGACACGACACTGACA+TGG - chr3_1:94519695-94519714 None:intergenic 55.0%
GTCGTGTCAGGTGTCTGTGT+TGG + chr3_1:94519702-94519721 Msa0389580:intron 55.0%
TGGAGCGTGATTGCTAACCC+TGG + chr3_1:94519892-94519911 Msa0389580:intron 55.0%
GGAGCGTGATTGCTAACCCT+GGG + chr3_1:94519893-94519912 Msa0389580:intron 55.0%
GTCCGCTAGTTAGTCCTGTG+TGG + chr3_1:94519976-94519995 Msa0389580:intron 55.0%
GAGTACTCAGGTGGATAGGG+TGG + chr3_1:94520002-94520021 Msa0389580:intron 55.0%
AGGTCTTGGAGGTGGGAAGA+AGG + chr3_1:94520072-94520091 Msa0389580:intron 55.0%
GGTGGCTTCTGAGCATCAAC+GGG + chr3_1:94520176-94520195 Msa0389580:intron 55.0%
TTCCCACTCGTAGTAGGAGC+AGG - chr3_1:94520259-94520278 None:intergenic 55.0%
TGGGACCTTGTGACTTTGGG+TGG + chr3_1:94520330-94520349 Msa0389580:intron 55.0%
AGCGTGTGGTTGTCTCTGCT+AGG + chr3_1:94520372-94520391 Msa0389580:intron 55.0%
GTGTGGTTGTCTCTGCTAGG+AGG + chr3_1:94520375-94520394 Msa0389580:intron 55.0%
TGGTTGTCTCTGCTAGGAGG+TGG + chr3_1:94520378-94520397 Msa0389580:intron 55.0%
GGTTGTCTCTGCTAGGAGGT+GGG + chr3_1:94520379-94520398 Msa0389580:intron 55.0%
AAGCGCGTCATTGACGGTTG+GGG - chr3_1:94520766-94520785 None:intergenic 55.0%
ACTACCCACGATAGGACAGC+GGG + chr3_1:94521344-94521363 Msa0389580:intron 55.0%
! ACAGAAGCCATGGCGGAGAA+TGG - chr3_1:94522483-94522502 None:intergenic 55.0%
CACGTTCCTTAAAGGGGCTC+TGG + chr3_1:94523307-94523326 Msa0389580:intron 55.0%
TTCCTCATGGCAGGCTCACA+CGG + chr3_1:94523817-94523836 Msa0389580:intron 55.0%
TGGTATACCCAACTCCTCGC+TGG - chr3_1:94523915-94523934 None:intergenic 55.0%
! GGTCTGCCAAGGAGAGCTTT+TGG + chr3_1:94524131-94524150 Msa0389580:five_prime_UTR 55.0%
TCCTGGCCAAAAGCTCTCCT+TGG - chr3_1:94524140-94524159 None:intergenic 55.0%
GTCAAGGGGGCCAAGTTCAT+TGG + chr3_1:94525697-94525716 Msa0389580:CDS 55.0%
!! AGTTGGTCTTCCTGCGCTTC+AGG + chr3_1:94525737-94525756 Msa0389580:CDS 55.0%
CGAGAGAAAGTCAAGCACCC+TGG - chr3_1:94525851-94525870 None:intergenic 55.0%
CTGCAGTTACAGCAGGCTTC+AGG - chr3_1:94526430-94526449 None:intergenic 55.0%
TCATGGCTAGCGATGGTCTG+TGG + chr3_1:94526880-94526899 Msa0389580:CDS 55.0%
CATGGCTAGCGATGGTCTGT+GGG + chr3_1:94526881-94526900 Msa0389580:CDS 55.0%
! AGGCAGGCATGTGCTCTAAG+AGG + chr3_1:94526955-94526974 Msa0389580:CDS 55.0%
ATCGACGCGTGTCCGACACT+GGG - chr3_1:94519152-94519171 None:intergenic 60.0%
TTGGACGCTTCTTGGACCGG+TGG + chr3_1:94519310-94519329 Msa0389580:intron 60.0%
!! CTGTGGTGCGTCGGTTGAGT+CGG + chr3_1:94519932-94519951 Msa0389580:intron 60.0%
GGCTTCTGAGCATCAACGGG+TGG + chr3_1:94520179-94520198 Msa0389580:intron 60.0%
CCACACGCTTACCAAGGGGA+AGG - chr3_1:94520361-94520380 None:intergenic 60.0%
CCTTCCCCTTGGTAAGCGTG+TGG + chr3_1:94520358-94520377 Msa0389580:intron 60.0%
TGTCTCTGCTAGGAGGTGGG+AGG + chr3_1:94520382-94520401 Msa0389580:intron 60.0%
GTCTCTGCTAGGAGGTGGGA+GGG + chr3_1:94520383-94520402 Msa0389580:intron 60.0%
CTACCCACGATAGGACAGCG+GGG + chr3_1:94521345-94521364 Msa0389580:intron 60.0%
TACCCACGATAGGACAGCGG+GGG + chr3_1:94521346-94521365 Msa0389580:intron 60.0%
TTATGCCTACGGCGCCGCTA+TGG + chr3_1:94522407-94522426 Msa0389580:intron 60.0%
TGCAGCGCCAACCACCATAG+CGG - chr3_1:94522424-94522443 None:intergenic 60.0%
CTGCATGCCATTCTCCGCCA+TGG + chr3_1:94522473-94522492 Msa0389580:intron 60.0%
GGCACACCAGAGCCCCTTTA+AGG - chr3_1:94523316-94523335 None:intergenic 60.0%
TACCGTGTGAGCCTGCCATG+AGG - chr3_1:94523822-94523841 None:intergenic 60.0%
AACTCCTCGCTGGCAAGGAC+CGG - chr3_1:94523905-94523924 None:intergenic 60.0%
GTCCTTGCCAGCGAGGAGTT+GGG + chr3_1:94523905-94523924 Msa0389580:five_prime_UTR 60.0%
TACCCAACTCCTCGCTGGCA+AGG - chr3_1:94523910-94523929 None:intergenic 60.0%
! GCCAAGGAGAGCTTTTGGCC+AGG + chr3_1:94524136-94524155 Msa0389580:five_prime_UTR 60.0%
! TGCTACTTGTGGGAGACGGG+AGG + chr3_1:94524254-94524273 Msa0389580:five_prime_UTR 60.0%
TTGTGGGAGACGGGAGGCTA+TGG + chr3_1:94524260-94524279 Msa0389580:exon 60.0%
CGCAGGAAGACCAACTCTCC+AGG - chr3_1:94525733-94525752 None:intergenic 60.0%
! GAGGTTGGCTACGGAAGCTG+TGG + chr3_1:94526974-94526993 Msa0389580:CDS 60.0%
GCTACGGAAGCTGTGGAACG+TGG + chr3_1:94526981-94527000 Msa0389580:CDS 60.0%
CATCGACGCGTGTCCGACAC+TGG - chr3_1:94519153-94519172 None:intergenic 65.0%
! GGGTGGTTCTGCCTTCCCCT+TGG + chr3_1:94520347-94520366 Msa0389580:intron 65.0%
TCTGCTAGGAGGTGGGAGGG+TGG + chr3_1:94520386-94520405 Msa0389580:intron 65.0%
CTCCCCCGCTGTCCTATCGT+GGG - chr3_1:94521351-94521370 None:intergenic 65.0%
TCTCCCCCGCTGTCCTATCG+TGG - chr3_1:94521352-94521371 None:intergenic 65.0%
AACCACCATAGCGGCGCCGT+AGG - chr3_1:94522415-94522434 None:intergenic 65.0%
TACGGCGCCGCTATGGTGGT+TGG + chr3_1:94522414-94522433 Msa0389580:intron 65.0%
GGTCCTTGCCAGCGAGGAGT+TGG + chr3_1:94523904-94523923 Msa0389580:five_prime_UTR 65.0%
TGGGAGACGGGAGGCTATGG+AGG + chr3_1:94524263-94524282 Msa0389580:exon 65.0%
TAGGAGGTGGGAGGGTGGCC+AGG + chr3_1:94520391-94520410 Msa0389580:intron 70.0%
TGCCTACGGCGCCGCTATGG+TGG + chr3_1:94522410-94522429 Msa0389580:intron 70.0%
ACGACCGGTCCTTGCCAGCG+AGG + chr3_1:94523898-94523917 Msa0389580:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94518193 94527321 94518193 ID=Msa0389580;Name=Msa0389580
chr3_1 mRNA 94518193 94527321 94518193 ID=Msa0389580-mRNA-1;Parent=Msa0389580;Name=Msa0389580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1380|0.83|0.76|1|0.91|0.92|13|0|274
chr3_1 exon 94518193 94518494 94518193 ID=Msa0389580-mRNA-1:exon:26872;Parent=Msa0389580-mRNA-1
chr3_1 exon 94518589 94518706 94518589 ID=Msa0389580-mRNA-1:exon:26873;Parent=Msa0389580-mRNA-1
chr3_1 exon 94520638 94520804 94520638 ID=Msa0389580-mRNA-1:exon:26874;Parent=Msa0389580-mRNA-1
chr3_1 exon 94521683 94521750 94521683 ID=Msa0389580-mRNA-1:exon:26875;Parent=Msa0389580-mRNA-1
chr3_1 exon 94521864 94522087 94521864 ID=Msa0389580-mRNA-1:exon:26876;Parent=Msa0389580-mRNA-1
chr3_1 exon 94523100 94523151 94523100 ID=Msa0389580-mRNA-1:exon:26877;Parent=Msa0389580-mRNA-1
chr3_1 exon 94523830 94524360 94523830 ID=Msa0389580-mRNA-1:exon:26878;Parent=Msa0389580-mRNA-1
chr3_1 exon 94525163 94525232 94525163 ID=Msa0389580-mRNA-1:exon:26879;Parent=Msa0389580-mRNA-1
chr3_1 exon 94525326 94525521 94525326 ID=Msa0389580-mRNA-1:exon:26880;Parent=Msa0389580-mRNA-1
chr3_1 exon 94525654 94525758 94525654 ID=Msa0389580-mRNA-1:exon:26881;Parent=Msa0389580-mRNA-1
chr3_1 exon 94526401 94526496 94526401 ID=Msa0389580-mRNA-1:exon:26882;Parent=Msa0389580-mRNA-1
chr3_1 exon 94526879 94527022 94526879 ID=Msa0389580-mRNA-1:exon:26883;Parent=Msa0389580-mRNA-1
chr3_1 exon 94527190 94527321 94527190 ID=Msa0389580-mRNA-1:exon:26884;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94518193 94518494 94518193 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94518589 94518706 94518589 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94520638 94520804 94520638 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94521683 94521750 94521683 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94521864 94522087 94521864 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94523100 94523151 94523100 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 five_prime_UTR 94523830 94524278 94523830 ID=Msa0389580-mRNA-1:five_prime_utr;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94524279 94524360 94524279 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94525163 94525232 94525163 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94525326 94525521 94525326 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94525654 94525758 94525654 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94526401 94526496 94526401 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94526879 94527022 94526879 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
chr3_1 CDS 94527190 94527321 94527190 ID=Msa0389580-mRNA-1:cds;Parent=Msa0389580-mRNA-1
Gene Sequence

>Msa0389580

ATGGAGGACACACATTTCATTCTGCCCCATGTTTTCAATGAAAAGGATGTCTATGCTTTTGGTATCTTTGATGGCCATAGAGGCGCAGCAGCTGCAGAGTTTTCTTCTAGGGCTGTACCAGCAGTTTTGCAAACTCTTGGTTTTACGGGCAGTCCTGCTAATGCACTAGTGGAAGCATTCCTTAGAACAGATACTGCCTTCAGAAAAGAGCTTGCTTCCTATCGCAAATCCAACAGATGTATCCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTATTGTAAGTGGGAACAAGCTATTTGTTGCTAATAGTGGTGATTGTCGGGCAATCTTATGTCGTGCGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATTCGTCAAGGGGGCCAAGTTCATTGGCAAGTTGATACCTGGAGAGTTGGTCTTCCTGCGCTTCAGGTTACTCGTTCTATCGGTGACGATGACCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAGAGCACCTTACTTGCAGAGGATGAATTTCTGGTCATGGCTAGCGATGGTCTGTGGGATGTGATGAGCAGTTTGGATGTGATAAATATAATAAAGGACACAGTTAAAGAGGCAGGCATGTGCTCTAAGAGGTTGGCTACGGAAGCTGTGGAACGTGGCAGCAAAGATAACATTACAAATTTGTCCAACCAATCACAATTCATGCTGGCCCACAAAACGGGTAGTGTAACAAAAATGAAAGTCAACAAAAATGGCTCTGTGGATAACACAGTCGGGATAACTCGTGAAATTGAAATTCGGGATAACTAG
Protein sequence

>Msa0389580

MEDTHFILPHVFNEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTLGFTGSPANALVEAFLRTDTAFRKELASYRKSNRCIQKDWHPGCTAIAAIVSGNKLFVANSGDCRAILCRADHVASCLQERERVIRQGGQVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITESTLLAEDEFLVMASDGLWDVMSSLDVINIIKDTVKEAGMCSKRLATEAVERGSKDNITNLSNQSQFMLAHKTGSVTKMKVNKNGSVDNTVGITREIEIRDN*