AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0767040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767040 MtrunA17_Chr5g0418481 81.250 176 3 1 1 146 1 176 1.06e-97 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767040 AT2G03420.1 75.676 74 18 0 71 144 95 168 4.56e-36 122

Find 52 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAACTGTTTCTTCAAT+TGG 0.317245 5_2:+29560156 None:intergenic
CTTCAATTGCAATTCTTCTC+TGG 0.318920 5_2:-29561764 Msa0767040:CDS
CTGCTTACGAGGGGCGGAAT+GGG 0.329826 5_2:-29560381 Msa0767040:CDS
ATGAATTTGTCCCTTGCCTC+TGG 0.354711 5_2:+29560326 None:intergenic
ACGTGGATCATTTATATGTA+TGG 0.369586 5_2:-29560088 Msa0767040:three_prime_UTR
AGCAAAGGACGGGGAGATAA+GGG 0.376721 5_2:+29562028 None:intergenic
CCTCAAAAGAAGGTTCAGTT+TGG 0.387035 5_2:-29561873 Msa0767040:CDS
CATGATGATGATGATTGGTT+TGG 0.414757 5_2:+29561956 None:intergenic
CTGCCTATCAGCTGAACACT+TGG 0.443158 5_2:+29561997 None:intergenic
CTCCCAAGTGTTCAGCTGAT+AGG 0.450504 5_2:-29562000 Msa0767040:five_prime_UTR
GTAAGAATGATGAGAAGATA+AGG 0.480601 5_2:+29561818 None:intergenic
CAAACCAATCATCATCATCA+TGG 0.480934 5_2:-29561955 Msa0767040:exon
AAGCAAAGGACGGGGAGATA+AGG 0.481712 5_2:+29562027 None:intergenic
GGGAGTTGGAAGCAAAGGAC+GGG 0.489079 5_2:+29562018 None:intergenic
CGAGGGGCGGAATGGGGAGT+TGG 0.490686 5_2:-29560374 Msa0767040:CDS
GCTCAAGCAGTTTCTTCACC+AGG 0.491458 5_2:+29561067 None:intergenic
ACTGCTTACGAGGGGCGGAA+TGG 0.499290 5_2:-29560382 Msa0767040:CDS
GAACCCATGATGATGATGAT+TGG 0.506344 5_2:+29561951 None:intergenic
CATAGCAATGTTGAAGGAGA+AGG 0.511435 5_2:-29560306 Msa0767040:CDS
TCAGCTGAACACTTGGGAGT+TGG 0.522533 5_2:+29562004 None:intergenic
CAAATTCATAGCAATGTTGA+AGG 0.527626 5_2:-29560312 Msa0767040:CDS
ACTCAGCAATCCTCAAAAGA+AGG 0.529490 5_2:-29561883 Msa0767040:CDS
CACTTGGGAGTTGGAAGCAA+AGG 0.533144 5_2:+29562013 None:intergenic
ATTCTTCTCTGGTCAACTCC+AGG 0.534134 5_2:-29561753 Msa0767040:intron
CTCAAGCAGTTTCTTCACCA+GGG 0.535692 5_2:+29561068 None:intergenic
GTGGAAATCTGAATGAAAGA+TGG 0.538239 5_2:+29561918 None:intergenic
GATAGGCAGCAGTGTAGAGA+GGG 0.542653 5_2:-29561983 Msa0767040:five_prime_UTR
GGGAATGACTCCAGAGGCAA+GGG 0.550474 5_2:-29560336 Msa0767040:CDS
TCAAGCAGTTTCTTCACCAG+GGG 0.567433 5_2:+29561069 None:intergenic
TGCTTACGAGGGGCGGAATG+GGG 0.568619 5_2:-29560380 Msa0767040:CDS
GCAAAGGACGGGGAGATAAG+GGG 0.569816 5_2:+29562029 None:intergenic
TGGGAGTTGGAAGCAAAGGA+CGG 0.574782 5_2:+29562017 None:intergenic
AATGAAAGATGGTAATGAAG+AGG 0.576236 5_2:+29561929 None:intergenic
AGGGAATGACTCCAGAGGCA+AGG 0.577514 5_2:-29560337 Msa0767040:CDS
GAGAACAAGTACTGCTTACG+AGG 0.584541 5_2:-29560392 Msa0767040:CDS
AAACCAATCATCATCATCAT+GGG 0.587744 5_2:-29561954 Msa0767040:exon
TGCAGCTAGAGCATATAGAA+AGG 0.592119 5_2:-29560264 Msa0767040:three_prime_UTR
TAAGGGGCAGCAGAGATACA+AGG 0.593420 5_2:+29562045 None:intergenic
GTTGGTGATTGTTCAGCAGA+GGG 0.594398 5_2:-29560356 Msa0767040:CDS
AGTTGGTGATTGTTCAGCAG+AGG 0.606424 5_2:-29560357 Msa0767040:CDS
CAAGTACTGCTTACGAGGGG+CGG 0.612792 5_2:-29560387 Msa0767040:CDS
TGATAGGCAGCAGTGTAGAG+AGG 0.614861 5_2:-29561984 Msa0767040:five_prime_UTR
TGCCTATCAGCTGAACACTT+GGG 0.618533 5_2:+29561998 None:intergenic
TTGAACTAATTAATTAGACG+TGG 0.620014 5_2:-29560105 Msa0767040:three_prime_UTR
GGAGTTGGAAGCAAAGGACG+GGG 0.625031 5_2:+29562019 None:intergenic
GCAATGTTGAAGGAGAAGGT+TGG 0.630694 5_2:-29560302 Msa0767040:CDS
ATTGCAATTGAAGCAGCCAA+AGG 0.635712 5_2:+29561774 None:intergenic
AGAACAAGTACTGCTTACGA+GGG 0.671236 5_2:-29560391 Msa0767040:CDS
ATAGGCAGCAGTGTAGAGAG+GGG 0.674164 5_2:-29561982 Msa0767040:five_prime_UTR
AAGATTTAAAGAGACACCCC+TGG 0.680049 5_2:-29561085 Msa0767040:CDS
AGCAGAGGGAATGACTCCAG+AGG 0.703314 5_2:-29560342 Msa0767040:CDS
GAACAAGTACTGCTTACGAG+GGG 0.743478 5_2:-29560390 Msa0767040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTGTTTTTGAAAA+AGG - chr5_2:29561843-29561862 Msa0767040:CDS 10.0%
!!! AAATATATTGTTTTTGAAAA+AGG - chr5_2:29561843-29561862 Msa0767040:CDS 10.0%
!! TAATGTCCAATTAAAAAAAT+TGG - chr5_2:29561216-29561235 Msa0767040:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG - chr5_2:29561475-29561494 Msa0767040:intron 15.0%
!! TAATGTCCAATTAAAAAAAT+TGG - chr5_2:29561216-29561235 Msa0767040:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG - chr5_2:29561475-29561494 Msa0767040:intron 15.0%
!! CTTTAATTCTTAAGAATCAT+AGG + chr5_2:29560626-29560645 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG + chr5_2:29560882-29560901 None:intergenic 20.0%
!! TTATGATTATTATTTCACAG+AGG - chr5_2:29560915-29560934 Msa0767040:intron 20.0%
!! TAGCCTAAAAAAATTATAAG+AGG + chr5_2:29561306-29561325 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG - chr5_2:29561389-29561408 Msa0767040:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG - chr5_2:29561803-29561822 Msa0767040:CDS 20.0%
!! CTTTAATTCTTAAGAATCAT+AGG + chr5_2:29560626-29560645 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG + chr5_2:29560882-29560901 None:intergenic 20.0%
!! TTATGATTATTATTTCACAG+AGG - chr5_2:29560915-29560934 Msa0767040:intron 20.0%
!! TAGCCTAAAAAAATTATAAG+AGG + chr5_2:29561306-29561325 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG - chr5_2:29561389-29561408 Msa0767040:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG - chr5_2:29561803-29561822 Msa0767040:CDS 20.0%
!! TAAGATAGTTTGAGTTAGTT+AGG - chr5_2:29560501-29560520 Msa0767040:intron 25.0%
! AAATCATGTATGAGAAATGT+CGG + chr5_2:29561175-29561194 None:intergenic 25.0%
! TCCAATTAAAAAAATTGGCT+CGG - chr5_2:29561221-29561240 Msa0767040:intron 25.0%
!!! GAGCCTCTTATAATTTTTTT+AGG - chr5_2:29561300-29561319 Msa0767040:intron 25.0%
! AATACATCATATCAGTAACT+AGG - chr5_2:29561336-29561355 Msa0767040:intron 25.0%
! CTCACAAAAAAGAATATTAC+AGG + chr5_2:29561428-29561447 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG - chr5_2:29561461-29561480 Msa0767040:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG + chr5_2:29561465-29561484 None:intergenic 25.0%
! TTAATACCAAGACGAATAAT+AGG + chr5_2:29561555-29561574 None:intergenic 25.0%
!! ATTTTTGTGTTTTGCTCTTT+AGG - chr5_2:29561624-29561643 Msa0767040:intron 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG + chr5_2:29561924-29561943 None:intergenic 25.0%
! TTGAACTAATTAATTAGACG+TGG - chr5_2:29561949-29561968 Msa0767040:exon 25.0%
!! TAAGATAGTTTGAGTTAGTT+AGG - chr5_2:29560501-29560520 Msa0767040:intron 25.0%
! AAATCATGTATGAGAAATGT+CGG + chr5_2:29561175-29561194 None:intergenic 25.0%
! TCCAATTAAAAAAATTGGCT+CGG - chr5_2:29561221-29561240 Msa0767040:intron 25.0%
!!! GAGCCTCTTATAATTTTTTT+AGG - chr5_2:29561300-29561319 Msa0767040:intron 25.0%
! AATACATCATATCAGTAACT+AGG - chr5_2:29561336-29561355 Msa0767040:intron 25.0%
! CTCACAAAAAAGAATATTAC+AGG + chr5_2:29561428-29561447 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG - chr5_2:29561461-29561480 Msa0767040:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG + chr5_2:29561465-29561484 None:intergenic 25.0%
! TTAATACCAAGACGAATAAT+AGG + chr5_2:29561555-29561574 None:intergenic 25.0%
!! ATTTTTGTGTTTTGCTCTTT+AGG - chr5_2:29561624-29561643 Msa0767040:intron 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG + chr5_2:29561924-29561943 None:intergenic 25.0%
! TTGAACTAATTAATTAGACG+TGG - chr5_2:29561949-29561968 Msa0767040:exon 25.0%
AAACCAATCATCATCATCAT+GGG - chr5_2:29560100-29560119 Msa0767040:three_prime_UTR 30.0%
! AATGAAAGATGGTAATGAAG+AGG + chr5_2:29560128-29560147 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG + chr5_2:29560239-29560258 None:intergenic 30.0%
TCTTCAAAAATCAGTTCCTT+TGG - chr5_2:29560264-29560283 Msa0767040:three_prime_UTR 30.0%
ATATGAGATAGAGATAGCAT+AGG + chr5_2:29560579-29560598 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG + chr5_2:29560822-29560841 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG + chr5_2:29560945-29560964 None:intergenic 30.0%
!! TTTTATTTAGACAAAGTCGC+AGG - chr5_2:29561067-29561086 Msa0767040:CDS 30.0%
GACATTTCTCATACATGATT+TGG - chr5_2:29561174-29561193 Msa0767040:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG + chr5_2:29561225-29561244 None:intergenic 30.0%
TTAGATCCTATTATTCGTCT+TGG - chr5_2:29561546-29561565 Msa0767040:intron 30.0%
CAAATTCATAGCAATGTTGA+AGG - chr5_2:29561742-29561761 Msa0767040:intron 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG + chr5_2:29561829-29561848 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG - chr5_2:29561869-29561888 Msa0767040:CDS 30.0%
! CCTAAAACTGTTTCTTCAAT+TGG + chr5_2:29561901-29561920 None:intergenic 30.0%
! CCAATTGAAGAAACAGTTTT+AGG - chr5_2:29561898-29561917 Msa0767040:CDS 30.0%
ACGTGGATCATTTATATGTA+TGG - chr5_2:29561966-29561985 Msa0767040:five_prime_UTR 30.0%
AAACCAATCATCATCATCAT+GGG - chr5_2:29560100-29560119 Msa0767040:three_prime_UTR 30.0%
! AATGAAAGATGGTAATGAAG+AGG + chr5_2:29560128-29560147 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG + chr5_2:29560239-29560258 None:intergenic 30.0%
TCTTCAAAAATCAGTTCCTT+TGG - chr5_2:29560264-29560283 Msa0767040:three_prime_UTR 30.0%
ATATGAGATAGAGATAGCAT+AGG + chr5_2:29560579-29560598 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG + chr5_2:29560822-29560841 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG + chr5_2:29560945-29560964 None:intergenic 30.0%
!! TTTTATTTAGACAAAGTCGC+AGG - chr5_2:29561067-29561086 Msa0767040:CDS 30.0%
GACATTTCTCATACATGATT+TGG - chr5_2:29561174-29561193 Msa0767040:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG + chr5_2:29561225-29561244 None:intergenic 30.0%
TTAGATCCTATTATTCGTCT+TGG - chr5_2:29561546-29561565 Msa0767040:intron 30.0%
CAAATTCATAGCAATGTTGA+AGG - chr5_2:29561742-29561761 Msa0767040:intron 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG + chr5_2:29561829-29561848 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG - chr5_2:29561869-29561888 Msa0767040:CDS 30.0%
! CCTAAAACTGTTTCTTCAAT+TGG + chr5_2:29561901-29561920 None:intergenic 30.0%
! CCAATTGAAGAAACAGTTTT+AGG - chr5_2:29561898-29561917 Msa0767040:CDS 30.0%
ACGTGGATCATTTATATGTA+TGG - chr5_2:29561966-29561985 Msa0767040:five_prime_UTR 30.0%
! CATGATGATGATGATTGGTT+TGG + chr5_2:29560101-29560120 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG - chr5_2:29560099-29560118 Msa0767040:three_prime_UTR 35.0%
GTGGAAATCTGAATGAAAGA+TGG + chr5_2:29560139-29560158 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG + chr5_2:29560161-29560180 None:intergenic 35.0%
CTTCAATTGCAATTCTTCTC+TGG - chr5_2:29560290-29560309 Msa0767040:exon 35.0%
! TGGTAAAAGGTTACTTTACC+TGG + chr5_2:29560322-29560341 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG + chr5_2:29560335-29560354 None:intergenic 35.0%
TGACGATTATGATTGATCGA+CGG - chr5_2:29560665-29560684 Msa0767040:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG - chr5_2:29560814-29560833 Msa0767040:intron 35.0%
! AAAGTGCTATGTCGATATGT+CGG - chr5_2:29561135-29561154 Msa0767040:intron 35.0%
! TCATACATGATTTGGACATG+AGG - chr5_2:29561182-29561201 Msa0767040:intron 35.0%
TTATAAGAGGCTCACTCAAT+AGG + chr5_2:29561293-29561312 None:intergenic 35.0%
ATAGGATCTAATGCATACAC+CGG + chr5_2:29561537-29561556 None:intergenic 35.0%
!! CACAGTTTTGACATATTGGT+TGG - chr5_2:29561873-29561892 Msa0767040:CDS 35.0%
! CATGATGATGATGATTGGTT+TGG + chr5_2:29560101-29560120 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG - chr5_2:29560099-29560118 Msa0767040:three_prime_UTR 35.0%
GTGGAAATCTGAATGAAAGA+TGG + chr5_2:29560139-29560158 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG + chr5_2:29560161-29560180 None:intergenic 35.0%
CTTCAATTGCAATTCTTCTC+TGG - chr5_2:29560290-29560309 Msa0767040:exon 35.0%
! TGGTAAAAGGTTACTTTACC+TGG + chr5_2:29560322-29560341 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG + chr5_2:29560335-29560354 None:intergenic 35.0%
TGACGATTATGATTGATCGA+CGG - chr5_2:29560665-29560684 Msa0767040:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG - chr5_2:29560814-29560833 Msa0767040:intron 35.0%
! AAAGTGCTATGTCGATATGT+CGG - chr5_2:29561135-29561154 Msa0767040:intron 35.0%
! TCATACATGATTTGGACATG+AGG - chr5_2:29561182-29561201 Msa0767040:intron 35.0%
TTATAAGAGGCTCACTCAAT+AGG + chr5_2:29561293-29561312 None:intergenic 35.0%
ATAGGATCTAATGCATACAC+CGG + chr5_2:29561537-29561556 None:intergenic 35.0%
!! CACAGTTTTGACATATTGGT+TGG - chr5_2:29561873-29561892 Msa0767040:CDS 35.0%
! GAACCCATGATGATGATGAT+TGG + chr5_2:29560106-29560125 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG - chr5_2:29560171-29560190 Msa0767040:three_prime_UTR 40.0%
! CCAAACTGAACCTTCTTTTG+AGG + chr5_2:29560184-29560203 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG - chr5_2:29560181-29560200 Msa0767040:three_prime_UTR 40.0%
ATTGCAATTGAAGCAGCCAA+AGG + chr5_2:29560283-29560302 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG + chr5_2:29560342-29560361 None:intergenic 40.0%
AGTCACTAAGACACATGCTA+AGG - chr5_2:29560366-29560385 Msa0767040:CDS 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG - chr5_2:29560733-29560752 Msa0767040:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG - chr5_2:29560969-29560988 Msa0767040:intron 40.0%
! TCGATATGTCGGATACGTTT+TGG - chr5_2:29561146-29561165 Msa0767040:intron 40.0%
ATCTAATGCATACACCGGAT+AGG + chr5_2:29561532-29561551 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG - chr5_2:29561663-29561682 Msa0767040:intron 40.0%
CATAGCAATGTTGAAGGAGA+AGG - chr5_2:29561748-29561767 Msa0767040:intron 40.0%
TGCAGCTAGAGCATATAGAA+AGG - chr5_2:29561790-29561809 Msa0767040:CDS 40.0%
! GAACCCATGATGATGATGAT+TGG + chr5_2:29560106-29560125 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG - chr5_2:29560171-29560190 Msa0767040:three_prime_UTR 40.0%
! CCAAACTGAACCTTCTTTTG+AGG + chr5_2:29560184-29560203 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG - chr5_2:29560181-29560200 Msa0767040:three_prime_UTR 40.0%
ATTGCAATTGAAGCAGCCAA+AGG + chr5_2:29560283-29560302 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG + chr5_2:29560342-29560361 None:intergenic 40.0%
AGTCACTAAGACACATGCTA+AGG - chr5_2:29560366-29560385 Msa0767040:CDS 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG - chr5_2:29560733-29560752 Msa0767040:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG - chr5_2:29560969-29560988 Msa0767040:intron 40.0%
! TCGATATGTCGGATACGTTT+TGG - chr5_2:29561146-29561165 Msa0767040:intron 40.0%
ATCTAATGCATACACCGGAT+AGG + chr5_2:29561532-29561551 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG - chr5_2:29561663-29561682 Msa0767040:intron 40.0%
CATAGCAATGTTGAAGGAGA+AGG - chr5_2:29561748-29561767 Msa0767040:intron 40.0%
TGCAGCTAGAGCATATAGAA+AGG - chr5_2:29561790-29561809 Msa0767040:CDS 40.0%
TGCCTATCAGCTGAACACTT+GGG + chr5_2:29560059-29560078 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG + chr5_2:29560158-29560177 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG - chr5_2:29560301-29560320 Msa0767040:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG - chr5_2:29560754-29560773 Msa0767040:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG + chr5_2:29560808-29560827 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG + chr5_2:29560988-29561007 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG + chr5_2:29560989-29561008 None:intergenic 45.0%
!! TCACTCAATAGGTGTTGGCT+CGG + chr5_2:29561282-29561301 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG - chr5_2:29561515-29561534 Msa0767040:intron 45.0%
! GAGAACAAGTACTGCTTACG+AGG - chr5_2:29561662-29561681 Msa0767040:intron 45.0%
! GAACAAGTACTGCTTACGAG+GGG - chr5_2:29561664-29561683 Msa0767040:intron 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG - chr5_2:29561697-29561716 Msa0767040:intron 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG - chr5_2:29561698-29561717 Msa0767040:intron 45.0%
ATGAATTTGTCCCTTGCCTC+TGG + chr5_2:29561731-29561750 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG - chr5_2:29561752-29561771 Msa0767040:intron 45.0%
GCAGAGATACAAGGCTGATA+AGG + chr5_2:29560003-29560022 None:intergenic 45.0%
TGCCTATCAGCTGAACACTT+GGG + chr5_2:29560059-29560078 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG + chr5_2:29560158-29560177 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG - chr5_2:29560301-29560320 Msa0767040:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG - chr5_2:29560754-29560773 Msa0767040:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG + chr5_2:29560808-29560827 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG + chr5_2:29560988-29561007 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG + chr5_2:29560989-29561008 None:intergenic 45.0%
!! TCACTCAATAGGTGTTGGCT+CGG + chr5_2:29561282-29561301 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG - chr5_2:29561515-29561534 Msa0767040:intron 45.0%
! GAGAACAAGTACTGCTTACG+AGG - chr5_2:29561662-29561681 Msa0767040:intron 45.0%
! GAACAAGTACTGCTTACGAG+GGG - chr5_2:29561664-29561683 Msa0767040:intron 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG - chr5_2:29561697-29561716 Msa0767040:intron 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG - chr5_2:29561698-29561717 Msa0767040:intron 45.0%
ATGAATTTGTCCCTTGCCTC+TGG + chr5_2:29561731-29561750 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG - chr5_2:29561752-29561771 Msa0767040:intron 45.0%
TAAGGGGCAGCAGAGATACA+AGG + chr5_2:29560012-29560031 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG + chr5_2:29560029-29560048 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG + chr5_2:29560030-29560049 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG + chr5_2:29560040-29560059 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG + chr5_2:29560044-29560063 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG + chr5_2:29560053-29560072 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG - chr5_2:29560054-29560073 Msa0767040:three_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG + chr5_2:29560060-29560079 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG - chr5_2:29560070-29560089 Msa0767040:three_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG - chr5_2:29560071-29560090 Msa0767040:three_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG - chr5_2:29560072-29560091 Msa0767040:three_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG - chr5_2:29560745-29560764 Msa0767040:intron 50.0%
ACAGGACTAGAGTCTGTTCC+TGG - chr5_2:29560772-29560791 Msa0767040:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG + chr5_2:29560799-29560818 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG + chr5_2:29560990-29561009 None:intergenic 50.0%
GTGTCCAAGACGTGTCTAAC+AGG + chr5_2:29561248-29561267 None:intergenic 50.0%
GAGGCTCACTCAATAGGTGT+TGG + chr5_2:29561287-29561306 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG + chr5_2:29561508-29561527 None:intergenic 50.0%
TAAGGGGCAGCAGAGATACA+AGG + chr5_2:29560012-29560031 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG + chr5_2:29560029-29560048 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG + chr5_2:29560030-29560049 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG + chr5_2:29560040-29560059 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG + chr5_2:29560044-29560063 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG + chr5_2:29560053-29560072 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG - chr5_2:29560054-29560073 Msa0767040:three_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG + chr5_2:29560060-29560079 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG - chr5_2:29560070-29560089 Msa0767040:three_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG - chr5_2:29560071-29560090 Msa0767040:three_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG - chr5_2:29560072-29560091 Msa0767040:three_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG - chr5_2:29560745-29560764 Msa0767040:intron 50.0%
ACAGGACTAGAGTCTGTTCC+TGG - chr5_2:29560772-29560791 Msa0767040:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG + chr5_2:29560799-29560818 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG + chr5_2:29560990-29561009 None:intergenic 50.0%
GTGTCCAAGACGTGTCTAAC+AGG + chr5_2:29561248-29561267 None:intergenic 50.0%
GAGGCTCACTCAATAGGTGT+TGG + chr5_2:29561287-29561306 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG + chr5_2:29561508-29561527 None:intergenic 50.0%
GCAAAGGACGGGGAGATAAG+GGG + chr5_2:29560028-29560047 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG + chr5_2:29560038-29560057 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG + chr5_2:29560039-29560058 None:intergenic 55.0%
CGGACCTGTTAGACACGTCT+TGG - chr5_2:29561241-29561260 Msa0767040:intron 55.0%
TTCGGACACAAGCCGTGTTG+CGG - chr5_2:29561493-29561512 Msa0767040:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG - chr5_2:29561667-29561686 Msa0767040:intron 55.0%
AGCAGAGGGAATGACTCCAG+AGG - chr5_2:29561712-29561731 Msa0767040:intron 55.0%
AGGGAATGACTCCAGAGGCA+AGG - chr5_2:29561717-29561736 Msa0767040:intron 55.0%
GGGAATGACTCCAGAGGCAA+GGG - chr5_2:29561718-29561737 Msa0767040:intron 55.0%
GCAAAGGACGGGGAGATAAG+GGG + chr5_2:29560028-29560047 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG + chr5_2:29560038-29560057 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG + chr5_2:29560039-29560058 None:intergenic 55.0%
CGGACCTGTTAGACACGTCT+TGG - chr5_2:29561241-29561260 Msa0767040:intron 55.0%
TTCGGACACAAGCCGTGTTG+CGG - chr5_2:29561493-29561512 Msa0767040:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG - chr5_2:29561667-29561686 Msa0767040:intron 55.0%
AGCAGAGGGAATGACTCCAG+AGG - chr5_2:29561712-29561731 Msa0767040:intron 55.0%
AGGGAATGACTCCAGAGGCA+AGG - chr5_2:29561717-29561736 Msa0767040:intron 55.0%
GGGAATGACTCCAGAGGCAA+GGG - chr5_2:29561718-29561737 Msa0767040:intron 55.0%
! ATCTGAGGCAGCTCAGGACC+AGG + chr5_2:29560793-29560812 None:intergenic 60.0%
TCGCAGGCAGCTGCAAGTGA+TGG - chr5_2:29561083-29561102 Msa0767040:CDS 60.0%
ACTGCTTACGAGGGGCGGAA+TGG - chr5_2:29561672-29561691 Msa0767040:intron 60.0%
CTGCTTACGAGGGGCGGAAT+GGG - chr5_2:29561673-29561692 Msa0767040:intron 60.0%
TGCTTACGAGGGGCGGAATG+GGG - chr5_2:29561674-29561693 Msa0767040:intron 60.0%
! ATCTGAGGCAGCTCAGGACC+AGG + chr5_2:29560793-29560812 None:intergenic 60.0%
TCGCAGGCAGCTGCAAGTGA+TGG - chr5_2:29561083-29561102 Msa0767040:CDS 60.0%
ACTGCTTACGAGGGGCGGAA+TGG - chr5_2:29561672-29561691 Msa0767040:intron 60.0%
CTGCTTACGAGGGGCGGAAT+GGG - chr5_2:29561673-29561692 Msa0767040:intron 60.0%
TGCTTACGAGGGGCGGAATG+GGG - chr5_2:29561674-29561693 Msa0767040:intron 60.0%
CGAGGGGCGGAATGGGGAGT+TGG - chr5_2:29561680-29561699 Msa0767040:intron 70.0%
CGAGGGGCGGAATGGGGAGT+TGG - chr5_2:29561680-29561699 Msa0767040:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29560003 29562073 29560003 ID=Msa0767040;Name=Msa0767040
chr5_2 mRNA 29560003 29562073 29560003 ID=Msa0767040-mRNA-1;Parent=Msa0767040;Name=Msa0767040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=115|0.5|1|1|1|1|3|289|146
chr5_2 exon 29560003 29560430 29560003 ID=Msa0767040-mRNA-1:exon:11281;Parent=Msa0767040-mRNA-1
chr5_2 exon 29561045 29561141 29561045 ID=Msa0767040-mRNA-1:exon:11280;Parent=Msa0767040-mRNA-1
chr5_2 exon 29561754 29562073 29561754 ID=Msa0767040-mRNA-1:exon:11279;Parent=Msa0767040-mRNA-1
chr5_2 five_prime_UTR 29561959 29562073 29561959 ID=Msa0767040-mRNA-1:five_prime_utr;Parent=Msa0767040-mRNA-1
chr5_2 CDS 29561754 29561958 29561754 ID=Msa0767040-mRNA-1:cds;Parent=Msa0767040-mRNA-1
chr5_2 CDS 29561045 29561141 29561045 ID=Msa0767040-mRNA-1:cds;Parent=Msa0767040-mRNA-1
chr5_2 CDS 29560292 29560430 29560292 ID=Msa0767040-mRNA-1:cds;Parent=Msa0767040-mRNA-1
chr5_2 three_prime_UTR 29560003 29560291 29560003 ID=Msa0767040-mRNA-1:three_prime_utr;Parent=Msa0767040-mRNA-1
Gene Sequence

>Msa0767040

ATGGGTTCCTCTTCATTACCATCTTTCATTCAGATTTCCACCTTCTGTGAAAAACTCAGCAATCCTCAAAAGAAGGTTCAGTTTGGAATGACAAAAAATGACACAAAGTTTTCTTGCTCCTTATCTTCTCATCATTCTTACAATATTCTTCAAAAATCAGTTCCTTTGGCTGCTTCAATTGCAATTCTTCTCTGGTCAACTCCAGAGGAAAACCAGAAGAAATATGCTGAAAATGATGCAAGATTTAAAGAGACACCCCTGGTGAAGAAACTGCTTGAGCAATCTAAGTTGAATAAAGAGAAGAATAGTAAAGAAATTGAGAACAAGTACTGCTTACGAGGGGCGGAATGGGGAGTTGGTGATTGTTCAGCAGAGGGAATGACTCCAGAGGCAAGGGACAAATTCATAGCAATGTTGAAGGAGAAGGTTGGAGAAAAGTAA

Protein sequence

>Msa0767040

MGSSSLPSFIQISTFCEKLSNPQKKVQFGMTKNDTKFSCSLSSHHSYNILQKSVPLAASIAILLWSTPEENQKKYAENDARFKETPLVKKLLEQSKLNKEKNSKEIENKYCLRGAEWGVGDCSAEGMTPEARDKFIAMLKEKVGEK*