AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168950 MtrunA17_Chr1g0185571 97.257 401 11 0 1 401 1 401 0.0 801
Msa0168950 MtrunA17_Chr7g0271591 35.733 375 209 10 42 392 5 371 7.10e-61 201
Msa0168950 MtrunA17_Chr1g0211441 66.154 65 5 1 277 341 1 48 2.26e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168950 AT3G63140.1 81.977 344 62 0 56 399 61 404 0.0 594
Msa0168950 AT1G09340.1 35.244 349 212 6 51 392 30 371 1.79e-59 198
Msa0168950 AT1G09340.2 35.530 349 210 7 52 392 31 372 1.33e-58 196

Find 107 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1_4:+51993474 None:intergenic
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1_4:-51993077 Msa0168950:CDS
AGCCTTTCCTTTCCGTAATA+TGG 0.258949 1_4:-51993445 Msa0168950:intron
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1_4:-51994510 Msa0168950:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1_4:-51993910 Msa0168950:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1_4:-51993555 Msa0168950:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1_4:+51994750 None:intergenic
ACTCCATCCCAATTTACTTT+TGG 0.315805 1_4:+51993069 None:intergenic
TGCCATTTGTAGGGATTGTT+CGG 0.321985 1_4:-51993713 Msa0168950:intron
TCATAATGCACAATGTTAAC+AGG 0.325320 1_4:+51993498 None:intergenic
CATTATGATCCAAAAGCTAT+TGG 0.327599 1_4:-51993483 Msa0168950:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1_4:-51994165 Msa0168950:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1_4:-51994568 Msa0168950:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1_4:+51992974 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.376564 1_4:-51993690 Msa0168950:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1_4:-51993010 Msa0168950:CDS
GCCATTTGTAGGGATTGTTC+GGG 0.401187 1_4:-51993712 Msa0168950:intron
GCTAGATGATAAGATATTAG+AGG 0.403011 1_4:-51992960 Msa0168950:CDS
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1_4:-51993684 Msa0168950:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1_4:-51993893 Msa0168950:CDS
ATGCTATGATTTGCAGCATC+CGG 0.409637 1_4:+51993594 None:intergenic
AGATTGATAGAGAGGAGGAT+TGG 0.413296 1_4:+51995003 None:intergenic
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1_4:+51994974 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1_4:+51994995 None:intergenic
AAGCATGGCCATTGTTGCTT+AGG 0.431107 1_4:+51995124 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1_4:+51994141 None:intergenic
TACTTTGCAAAAGAGCTACT+TGG 0.437164 1_4:-51994837 Msa0168950:CDS
TTCTTGTTCATCAGTAGTGC+TGG 0.442792 1_4:-51994118 Msa0168950:CDS
CCACAGTATATGATAGGGTC+TGG 0.453744 1_4:-51993887 Msa0168950:CDS
ATGTGAAAGTGGGAGAAGAT+TGG 0.454331 1_4:+51995061 None:intergenic
AGCGGTGGACATGCCGTGAT+TGG 0.454893 1_4:-51994864 Msa0168950:CDS
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1_4:-51994164 Msa0168950:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1_4:-51994567 Msa0168950:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1_4:+51992937 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1_4:-51993076 Msa0168950:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1_4:-51994536 Msa0168950:CDS
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1_4:+51994980 None:intergenic
TATCTGTAACTACCATATTA+CGG 0.470842 1_4:+51993433 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1_4:-51993009 Msa0168950:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1_4:+51994797 None:intergenic
TTAGCTTTATCTGCAACTGC+TGG 0.480698 1_4:-51995157 Msa0168950:five_prime_UTR
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1_4:-51994584 Msa0168950:intron
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1_4:-51994531 Msa0168950:CDS
TGGATATGAATGGATTAGAC+AGG 0.488013 1_4:+51992920 None:intergenic
CTTGTTACATGATTTAAATG+AGG 0.488668 1_4:-51992863 Msa0168950:three_prime_UTR
TGCTATGATTTGCAGCATCC+GGG 0.492238 1_4:+51993595 None:intergenic
TTTACATACCCCTTCAACAT+GGG 0.493986 1_4:+51994069 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1_4:+51993042 None:intergenic
AAACGTTTAGAAGCTAAAGA+AGG 0.497940 1_4:+51994960 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1_4:-51994079 Msa0168950:CDS
GCAAAAGAGCTACTTGGTGC+TGG 0.499775 1_4:-51994831 Msa0168950:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1_4:-51994151 Msa0168950:CDS
AAACTATGTGCTCAAGCTGC+AGG 0.509740 1_4:-51993525 Msa0168950:CDS
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1_4:-51994548 Msa0168950:CDS
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1_4:-51994532 Msa0168950:CDS
CATACTGTTGGAAATGAGAA+AGG 0.515395 1_4:-51995194 None:intergenic
AAGTGGGAGAAGATTGGAAG+AGG 0.519156 1_4:+51995067 None:intergenic
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1_4:-51993613 Msa0168950:CDS
TGAATGGATTAGACAGGCAC+TGG 0.522079 1_4:+51992926 None:intergenic
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1_4:-51994533 Msa0168950:CDS
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1_4:+51994998 None:intergenic
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1_4:-51993026 Msa0168950:CDS
AAAGTAGAAGAATGTGAAAG+TGG 0.543210 1_4:+51995050 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.543714 1_4:+51995097 None:intergenic
CACGGCATGTCCACCGCTGT+TGG 0.546475 1_4:+51994869 None:intergenic
ACAACACTCCCTACATCTGC+AGG 0.549124 1_4:+51994539 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1_4:-51994078 Msa0168950:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1_4:-51993968 Msa0168950:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1_4:+51995109 None:intergenic
GGAATGAAGAAGAGAAAGAA+AGG 0.551829 1_4:+51995024 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1_4:-51994547 Msa0168950:CDS
GTTGCAGAGAAGAGCAAGGT+AGG 0.560127 1_4:+51995089 None:intergenic
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1_4:-51994581 Msa0168950:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1_4:-51994486 Msa0168950:CDS
CTCATACTCCTAAGCAACAA+TGG 0.573968 1_4:-51995132 Msa0168950:exon
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1_4:-51993959 Msa0168950:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1_4:-51994907 Msa0168950:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1_4:+51993672 None:intergenic
TCAGTCACCATTCTCACTGT+TGG 0.586480 1_4:-51994804 Msa0168950:CDS
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1_4:+51994753 None:intergenic
CTGTTGGAAATGAGAAAGGA+AGG 0.588780 1_4:-51995190 Msa0168950:five_prime_UTR
TGAGAAAGGAAGGAAATAAG+TGG 0.589653 1_4:-51995180 Msa0168950:five_prime_UTR
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1_4:-51993072 Msa0168950:CDS
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1_4:-51994516 Msa0168950:CDS
AACGTTTAGAAGCTAAAGAA+GGG 0.594765 1_4:+51994961 None:intergenic
TTACATACCCCTTCAACATG+GGG 0.600415 1_4:+51994070 None:intergenic
TGCAAAGTAGAAGCCAATCA+CGG 0.603066 1_4:+51994851 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1_4:+51994157 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1_4:-51993892 Msa0168950:CDS
TACCATATTACGGAAAGGAA+AGG 0.618636 1_4:+51993443 None:intergenic
GTAACTACCATATTACGGAA+AGG 0.619320 1_4:+51993438 None:intergenic
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1_4:+51993684 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1_4:+51994073 None:intergenic
ATAATAAATACCAACAGCGG+TGG 0.623645 1_4:-51994879 Msa0168950:CDS
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1_4:-51994077 Msa0168950:intron
TGGAAACAACAAAGATTGTG+AGG 0.640779 1_4:-51993867 Msa0168950:CDS
CATAATGCACAATGTTAACA+GGG 0.646540 1_4:+51993499 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1_4:+51993553 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1_4:-51993033 Msa0168950:CDS
AGAGGTTGCAGAGAAGAGCA+AGG 0.651792 1_4:+51995085 None:intergenic
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1_4:-51994478 Msa0168950:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1_4:-51994566 Msa0168950:CDS
AAGTAGAAGAATGTGAAAGT+GGG 0.654024 1_4:+51995051 None:intergenic
ACAACAAAGATTGTGAGGAG+TGG 0.655123 1_4:-51993862 Msa0168950:CDS
CTAATAATAAATACCAACAG+CGG 0.689956 1_4:-51994882 Msa0168950:CDS
CCAGACCCTATCATATACTG+TGG 0.716866 1_4:+51993887 None:intergenic
CAGTGAGAATGGTGACTGAG+TGG 0.736853 1_4:+51994808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACCTTGATGTAATAA+TGG + chr1_4:51993363-51993382 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1_4:51993388-51993407 Msa0168950:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_4:51993984-51994003 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_4:51994207-51994226 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_4:51995081-51995100 None:intergenic 20.0%
!! ATTAAACCTTGATGTAATAA+TGG + chr1_4:51993363-51993382 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1_4:51993388-51993407 Msa0168950:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_4:51993984-51994003 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_4:51994207-51994226 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_4:51995081-51995100 None:intergenic 20.0%
! CTAATAATAAATACCAACAG+CGG - chr1_4:51993106-51993125 Msa0168950:intron 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_4:51993241-51993260 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_4:51993292-51993311 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_4:51993809-51993828 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_4:51993808-51993827 Msa0168950:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_4:51993970-51993989 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_4:51993992-51994011 Msa0168950:intron 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_4:51994199-51994218 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_4:51994265-51994284 Msa0168950:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_4:51994266-51994285 Msa0168950:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_4:51994558-51994577 None:intergenic 25.0%
!! TGTGTGATCATTTTACATTT+TGG + chr1_4:51995091-51995110 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_4:51995125-51995144 Msa0168950:exon 25.0%
! CTAATAATAAATACCAACAG+CGG - chr1_4:51993106-51993125 Msa0168950:intron 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_4:51993241-51993260 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_4:51993292-51993311 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_4:51993809-51993828 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_4:51993808-51993827 Msa0168950:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_4:51993970-51993989 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_4:51993992-51994011 Msa0168950:intron 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_4:51994199-51994218 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_4:51994265-51994284 Msa0168950:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_4:51994266-51994285 Msa0168950:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_4:51994558-51994577 None:intergenic 25.0%
!! TGTGTGATCATTTTACATTT+TGG + chr1_4:51995091-51995110 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_4:51995125-51995144 Msa0168950:exon 25.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_4:51992940-51992959 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_4:51992941-51992960 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_4:51993030-51993049 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_4:51993031-51993050 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_4:51993354-51993373 Msa0168950:intron 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_4:51994066-51994085 Msa0168950:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_4:51994067-51994086 Msa0168950:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_4:51994492-51994511 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_4:51994493-51994512 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_4:51994505-51994524 Msa0168950:CDS 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_4:51994582-51994601 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_4:51994647-51994666 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_4:51994978-51994997 Msa0168950:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_4:51994979-51994998 Msa0168950:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_4:51995017-51995036 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_4:51995028-51995047 Msa0168950:CDS 30.0%
ACATGAACAACAAAATAACG+TGG - chr1_4:51995189-51995208 Msa0168950:five_prime_UTR 30.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_4:51992940-51992959 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_4:51992941-51992960 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_4:51993030-51993049 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_4:51993031-51993050 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_4:51993354-51993373 Msa0168950:intron 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_4:51994066-51994085 Msa0168950:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_4:51994067-51994086 Msa0168950:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_4:51994492-51994511 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_4:51994493-51994512 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_4:51994505-51994524 Msa0168950:CDS 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_4:51994582-51994601 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_4:51994647-51994666 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_4:51994978-51994997 Msa0168950:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_4:51994979-51994998 Msa0168950:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_4:51995017-51995036 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_4:51995028-51995047 Msa0168950:CDS 30.0%
TGAGAAAGGAAGGAAATAAG+TGG - chr1_4:51992808-51992827 Msa0168950:three_prime_UTR 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_4:51992967-51992986 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_4:51993017-51993036 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_4:51993109-51993128 Msa0168950:intron 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_4:51993151-51993170 Msa0168950:intron 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_4:51993238-51993257 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_4:51993590-51993609 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_4:51993668-51993687 Msa0168950:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_4:51993783-51993802 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_4:51993922-51993941 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_4:51993923-51993942 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_4:51993949-51993968 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_4:51994121-51994140 Msa0168950:CDS 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_4:51994517-51994536 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_4:51994548-51994567 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_4:51994553-51994572 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_4:51994652-51994671 Msa0168950:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_4:51994661-51994680 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_4:51994780-51994799 Msa0168950:CDS 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_4:51994781-51994800 Msa0168950:CDS 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_4:51994912-51994931 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_4:51994911-51994930 Msa0168950:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_4:51994912-51994931 Msa0168950:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_4:51994922-51994941 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_4:51994955-51994974 Msa0168950:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_4:51995071-51995090 None:intergenic 35.0%
TGAGAAAGGAAGGAAATAAG+TGG - chr1_4:51992808-51992827 Msa0168950:three_prime_UTR 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_4:51992967-51992986 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_4:51993017-51993036 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_4:51993109-51993128 Msa0168950:intron 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_4:51993151-51993170 Msa0168950:intron 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_4:51993238-51993257 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_4:51993590-51993609 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_4:51993668-51993687 Msa0168950:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_4:51993783-51993802 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_4:51993922-51993941 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_4:51993923-51993942 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_4:51993949-51993968 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_4:51994121-51994140 Msa0168950:CDS 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_4:51994517-51994536 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_4:51994548-51994567 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_4:51994553-51994572 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_4:51994652-51994671 Msa0168950:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_4:51994661-51994680 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_4:51994780-51994799 Msa0168950:CDS 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_4:51994781-51994800 Msa0168950:CDS 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_4:51994912-51994931 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_4:51994911-51994930 Msa0168950:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_4:51994912-51994931 Msa0168950:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_4:51994922-51994941 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_4:51994955-51994974 Msa0168950:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_4:51995071-51995090 None:intergenic 35.0%
!! TTAGCTTTATCTGCAACTGC+TGG - chr1_4:51992831-51992850 Msa0168950:three_prime_UTR 40.0%
CTCATACTCCTAAGCAACAA+TGG - chr1_4:51992856-51992875 Msa0168950:three_prime_UTR 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_4:51992930-51992949 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_4:51992988-51993007 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_4:51993140-51993159 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_4:51993194-51993213 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_4:51993404-51993423 Msa0168950:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_4:51993478-51993497 Msa0168950:CDS 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_4:51993488-51993507 Msa0168950:CDS 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_4:51993585-51993604 Msa0168950:CDS 40.0%
CTGTTCTAATATATGCAGCC+AGG - chr1_4:51993762-51993781 Msa0168950:intron 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_4:51993812-51993831 Msa0168950:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_4:51993870-51993889 Msa0168950:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_4:51993921-51993940 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_4:51993998-51994017 Msa0168950:intron 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_4:51994095-51994114 Msa0168950:CDS 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_4:51994096-51994115 Msa0168950:CDS 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_4:51994126-51994145 Msa0168950:CDS 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_4:51994144-51994163 Msa0168950:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_4:51994145-51994164 Msa0168950:CDS 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1_4:51994275-51994294 Msa0168950:intron 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_4:51994397-51994416 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_4:51994438-51994457 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_4:51994543-51994562 Msa0168950:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_4:51994916-51994935 Msa0168950:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_4:51994956-51994975 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_4:51994960-51994979 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_4:51994962-51994981 Msa0168950:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_4:51994968-51994987 None:intergenic 40.0%
!! TTAGCTTTATCTGCAACTGC+TGG - chr1_4:51992831-51992850 Msa0168950:three_prime_UTR 40.0%
CTCATACTCCTAAGCAACAA+TGG - chr1_4:51992856-51992875 Msa0168950:three_prime_UTR 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_4:51992930-51992949 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_4:51992988-51993007 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_4:51993140-51993159 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_4:51993194-51993213 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_4:51993404-51993423 Msa0168950:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_4:51993478-51993497 Msa0168950:CDS 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_4:51993488-51993507 Msa0168950:CDS 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_4:51993585-51993604 Msa0168950:CDS 40.0%
CTGTTCTAATATATGCAGCC+AGG - chr1_4:51993762-51993781 Msa0168950:intron 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_4:51993812-51993831 Msa0168950:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_4:51993870-51993889 Msa0168950:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_4:51993921-51993940 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_4:51993998-51994017 Msa0168950:intron 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_4:51994095-51994114 Msa0168950:CDS 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_4:51994096-51994115 Msa0168950:CDS 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_4:51994126-51994145 Msa0168950:CDS 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_4:51994144-51994163 Msa0168950:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_4:51994145-51994164 Msa0168950:CDS 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1_4:51994275-51994294 Msa0168950:intron 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_4:51994397-51994416 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_4:51994438-51994457 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_4:51994543-51994562 Msa0168950:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_4:51994916-51994935 Msa0168950:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_4:51994956-51994975 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_4:51994960-51994979 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_4:51994962-51994981 Msa0168950:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_4:51994968-51994987 None:intergenic 40.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_4:51992867-51992886 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_4:51992924-51992943 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_4:51992993-51993012 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_4:51992996-51993015 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_4:51993011-51993030 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_4:51993081-51993100 Msa0168950:CDS 45.0%
TCAGTCACCATTCTCACTGT+TGG - chr1_4:51993184-51993203 Msa0168950:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_4:51993456-51993475 Msa0168950:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_4:51993493-51993512 Msa0168950:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_4:51993502-51993521 Msa0168950:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_4:51993824-51993843 Msa0168950:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_4:51993910-51993929 Msa0168950:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_4:51994029-51994048 Msa0168950:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_4:51994078-51994097 Msa0168950:CDS 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_4:51994104-51994123 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_4:51994101-51994120 Msa0168950:CDS 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1_4:51994276-51994295 Msa0168950:intron 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1_4:51994280-51994299 None:intergenic 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_4:51994396-51994415 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_4:51994463-51994482 Msa0168950:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_4:51994695-51994714 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_4:51994796-51994815 Msa0168950:CDS 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_4:51994949-51994968 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_4:51995065-51995084 None:intergenic 45.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_4:51992867-51992886 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_4:51992924-51992943 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_4:51992993-51993012 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_4:51992996-51993015 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_4:51993011-51993030 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_4:51993081-51993100 Msa0168950:CDS 45.0%
TCAGTCACCATTCTCACTGT+TGG - chr1_4:51993184-51993203 Msa0168950:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_4:51993456-51993475 Msa0168950:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_4:51993493-51993512 Msa0168950:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_4:51993502-51993521 Msa0168950:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_4:51993824-51993843 Msa0168950:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_4:51993910-51993929 Msa0168950:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_4:51994029-51994048 Msa0168950:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_4:51994078-51994097 Msa0168950:CDS 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_4:51994104-51994123 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_4:51994101-51994120 Msa0168950:CDS 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1_4:51994276-51994295 Msa0168950:intron 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1_4:51994280-51994299 None:intergenic 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_4:51994396-51994415 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_4:51994463-51994482 Msa0168950:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_4:51994695-51994714 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_4:51994796-51994815 Msa0168950:CDS 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_4:51994949-51994968 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_4:51995065-51995084 None:intergenic 45.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_4:51992882-51992901 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_4:51992894-51992913 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_4:51992902-51992921 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_4:51992906-51992925 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_4:51993157-51993176 Msa0168950:intron 50.0%
CAGTGAGAATGGTGACTGAG+TGG + chr1_4:51993183-51993202 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_4:51993407-51993426 Msa0168950:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_4:51993421-51993440 Msa0168950:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_4:51993440-51993459 Msa0168950:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_4:51993441-51993460 Msa0168950:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_4:51993452-51993471 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_4:51993452-51993471 Msa0168950:CDS 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_4:51993455-51993474 Msa0168950:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_4:51993457-51993476 Msa0168950:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_4:51993472-51993491 Msa0168950:CDS 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_4:51993823-51993842 Msa0168950:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_4:51993834-51993853 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_4:51993837-51993856 Msa0168950:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_4:51993850-51993869 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_4:51993909-51993928 Msa0168950:CDS 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_4:51993911-51993930 Msa0168950:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_4:51994020-51994039 Msa0168950:intron 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_4:51994298-51994317 Msa0168950:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_4:51994307-51994326 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_4:51994304-51994323 Msa0168950:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_4:51994319-51994338 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_4:51994375-51994394 Msa0168950:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_4:51994433-51994452 Msa0168950:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_4:51995054-51995073 None:intergenic 50.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_4:51992882-51992901 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_4:51992894-51992913 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_4:51992902-51992921 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_4:51992906-51992925 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_4:51993157-51993176 Msa0168950:intron 50.0%
CAGTGAGAATGGTGACTGAG+TGG + chr1_4:51993183-51993202 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_4:51993407-51993426 Msa0168950:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_4:51993421-51993440 Msa0168950:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_4:51993440-51993459 Msa0168950:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_4:51993441-51993460 Msa0168950:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_4:51993452-51993471 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_4:51993452-51993471 Msa0168950:CDS 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_4:51993455-51993474 Msa0168950:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_4:51993457-51993476 Msa0168950:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_4:51993472-51993491 Msa0168950:CDS 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_4:51993823-51993842 Msa0168950:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_4:51993834-51993853 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_4:51993837-51993856 Msa0168950:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_4:51993850-51993869 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_4:51993909-51993928 Msa0168950:CDS 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_4:51993911-51993930 Msa0168950:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_4:51994020-51994039 Msa0168950:intron 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_4:51994298-51994317 Msa0168950:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_4:51994307-51994326 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_4:51994304-51994323 Msa0168950:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_4:51994319-51994338 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_4:51994375-51994394 Msa0168950:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_4:51994433-51994452 Msa0168950:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_4:51995054-51995073 None:intergenic 50.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_4:51993420-51993439 Msa0168950:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_4:51993422-51993441 Msa0168950:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_4:51993510-51993529 Msa0168950:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_4:51993918-51993937 None:intergenic 55.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_4:51993420-51993439 Msa0168950:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_4:51993422-51993441 Msa0168950:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_4:51993510-51993529 Msa0168950:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_4:51993918-51993937 None:intergenic 55.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_4:51993124-51993143 Msa0168950:intron 60.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_4:51993124-51993143 Msa0168950:intron 60.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_4:51993122-51993141 None:intergenic 65.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_4:51993122-51993141 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51992800 51995210 51992800 ID=Msa0168950;Name=Msa0168950
chr1_4 mRNA 51992800 51995210 51992800 ID=Msa0168950-mRNA-1;Parent=Msa0168950;Name=Msa0168950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=75|1|1|1|1|1|6|134|401
chr1_4 exon 51992800 51993116 51992800 ID=Msa0168950-mRNA-1:exon:15344;Parent=Msa0168950-mRNA-1
chr1_4 exon 51993446 51993723 51993446 ID=Msa0168950-mRNA-1:exon:15343;Parent=Msa0168950-mRNA-1
chr1_4 exon 51993852 51993990 51993852 ID=Msa0168950-mRNA-1:exon:15342;Parent=Msa0168950-mRNA-1
chr1_4 exon 51994078 51994180 51994078 ID=Msa0168950-mRNA-1:exon:15341;Parent=Msa0168950-mRNA-1
chr1_4 exon 51994479 51994600 51994479 ID=Msa0168950-mRNA-1:exon:15340;Parent=Msa0168950-mRNA-1
chr1_4 exon 51994755 51995210 51994755 ID=Msa0168950-mRNA-1:exon:15339;Parent=Msa0168950-mRNA-1
chr1_4 five_prime_UTR 51995136 51995210 51995136 ID=Msa0168950-mRNA-1:five_prime_utr;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51994755 51995135 51994755 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51994479 51994600 51994479 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51994078 51994180 51994078 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51993852 51993990 51993852 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51993446 51993723 51993446 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 CDS 51992934 51993116 51992934 ID=Msa0168950-mRNA-1:cds;Parent=Msa0168950-mRNA-1
chr1_4 three_prime_UTR 51992800 51992933 51992800 ID=Msa0168950-mRNA-1:three_prime_utr;Parent=Msa0168950-mRNA-1
Gene Sequence

>Msa0168950

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAGCTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATAATAAATACCAACAGCGGTGGACATGCCGTGATTGGCTTCTACTTTGCAAAAGAGCTACTTGGTGCTGGCCACTCAGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGTGAGGAGTGGTTCTTTGACAGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTTCCTTTCCGTAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>Msa0168950

MAMLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLASKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*