Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796110 | G7JW17 | 92.754 | 138 | 10 | 0 | 17 | 154 | 17 | 154 | 1.80e-89 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002690 | Msa0796110 | 0.801855 | 7.392621e-49 | -8.615850e-47 |
| Msa0002700 | Msa0796110 | 0.802661 | 5.046899e-49 | -8.615850e-47 |
| Msa0004180 | Msa0796110 | 0.803526 | 3.342698e-49 | -8.615850e-47 |
| Msa0021570 | Msa0796110 | 0.802730 | 4.884300e-49 | -8.615850e-47 |
| Msa0028410 | Msa0796110 | 0.804246 | 2.368543e-49 | -8.615850e-47 |
| Msa0044700 | Msa0796110 | 0.816777 | 4.642997e-52 | -8.615850e-47 |
| Msa0046020 | Msa0796110 | 0.809047 | 2.294423e-50 | -8.615850e-47 |
| Msa0060720 | Msa0796110 | 0.803155 | 3.990009e-49 | -8.615850e-47 |
| Msa0069590 | Msa0796110 | 0.805776 | 1.133560e-49 | -8.615850e-47 |
| Msa0075080 | Msa0796110 | 0.812563 | 3.981957e-51 | -8.615850e-47 |
| Msa0075820 | Msa0796110 | 0.812499 | 4.112093e-51 | -8.615850e-47 |
| Msa0105500 | Msa0796110 | 0.802035 | 6.789250e-49 | -8.615850e-47 |
| Msa0116780 | Msa0796110 | 0.811379 | 7.209369e-51 | -8.615850e-47 |
| Msa0120100 | Msa0796110 | 0.801471 | 8.863782e-49 | -8.615850e-47 |
| Msa0606260 | Msa0796110 | 0.812243 | 4.675906e-51 | -8.615850e-47 |
| Msa0606340 | Msa0796110 | 0.804534 | 2.062407e-49 | -8.615850e-47 |
| Msa0607070 | Msa0796110 | 0.804729 | 1.878069e-49 | -8.615850e-47 |
| Msa0608280 | Msa0796110 | 0.804694 | 1.910254e-49 | -8.615850e-47 |
| Msa0608720 | Msa0796110 | 0.801451 | 8.948874e-49 | -8.615850e-47 |
| Msa0612950 | Msa0796110 | 0.808743 | 2.666155e-50 | -8.615850e-47 |
| Msa0615460 | Msa0796110 | 0.821395 | 4.131902e-53 | -8.615850e-47 |
| Msa0619450 | Msa0796110 | 0.802163 | 6.391079e-49 | -8.615850e-47 |
| Msa0619530 | Msa0796110 | 0.810453 | 1.144249e-50 | -8.615850e-47 |
| Msa0622450 | Msa0796110 | 0.805536 | 1.272957e-49 | -8.615850e-47 |
| Msa0633070 | Msa0796110 | -0.802013 | 6.862300e-49 | -8.615850e-47 |
| Msa0646310 | Msa0796110 | 0.800125 | 1.668973e-48 | -8.615850e-47 |
| Msa0653690 | Msa0796110 | 0.810699 | 1.012137e-50 | -8.615850e-47 |
| Msa0654850 | Msa0796110 | 0.808400 | 3.154791e-50 | -8.615850e-47 |
| Msa0655980 | Msa0796110 | 0.803315 | 3.696321e-49 | -8.615850e-47 |
| Msa0659580 | Msa0796110 | 0.804434 | 2.164694e-49 | -8.615850e-47 |
| Msa0687650 | Msa0796110 | 0.803111 | 4.073437e-49 | -8.615850e-47 |
| Msa0695250 | Msa0796110 | 0.802611 | 5.167646e-49 | -8.615850e-47 |
| Msa0698510 | Msa0796110 | 0.826014 | 3.423156e-54 | -8.615850e-47 |
| Msa0698680 | Msa0796110 | 0.827896 | 1.214347e-54 | -8.615850e-47 |
| Msa0711860 | Msa0796110 | 0.816582 | 5.135395e-52 | -8.615850e-47 |
| Msa0739820 | Msa0796110 | 0.802601 | 5.191472e-49 | -8.615850e-47 |
| Msa0750200 | Msa0796110 | 0.810865 | 9.319639e-51 | -8.615850e-47 |
| Msa0754340 | Msa0796110 | 0.968241 | 2.129465e-128 | -8.615850e-47 |
| Msa0770050 | Msa0796110 | 0.810262 | 1.257886e-50 | -8.615850e-47 |
| Msa0793130 | Msa0796110 | 0.808331 | 3.263393e-50 | -8.615850e-47 |
| Msa0794900 | Msa0796110 | 0.800344 | 1.505923e-48 | -8.615850e-47 |
| Msa0796110 | Msa0807840 | 0.800594 | 1.339183e-48 | -8.615850e-47 |
| Msa0796110 | Msa0825960 | 0.803467 | 3.438309e-49 | -8.615850e-47 |
| Msa0796110 | Msa0829250 | 0.802256 | 6.115067e-49 | -8.615850e-47 |
| Msa0796110 | Msa0831710 | 0.803798 | 2.935182e-49 | -8.615850e-47 |
| Msa0796110 | Msa0833790 | 0.922291 | 1.190502e-88 | -8.615850e-47 |
| Msa0796110 | Msa0866060 | 0.805423 | 1.344727e-49 | -8.615850e-47 |
| Msa0796110 | Msa0866150 | 0.812850 | 3.445171e-51 | -8.615850e-47 |
| Msa0796110 | Msa0868500 | 0.822228 | 2.650270e-53 | -8.615850e-47 |
| Msa0796110 | Msa0868510 | 0.815090 | 1.104908e-51 | -8.615850e-47 |
| Msa0796110 | Msa0868520 | 0.814908 | 1.212107e-51 | -8.615850e-47 |
| Msa0796110 | Msa0871860 | 0.812175 | 4.839040e-51 | -8.615850e-47 |
| Msa0796110 | Msa0888520 | 0.804811 | 1.805371e-49 | -8.615850e-47 |
| Msa0796110 | Msa0933320 | 0.802432 | 5.625078e-49 | -8.615850e-47 |
| Msa0796110 | Msa0934100 | 0.804603 | 1.995472e-49 | -8.615850e-47 |
| Msa0796110 | Msa0937180 | 0.810582 | 1.073193e-50 | -8.615850e-47 |
| Msa0796110 | Msa0937190 | 0.812889 | 3.377794e-51 | -8.615850e-47 |
| Msa0796110 | Msa0941410 | 0.810653 | 1.035687e-50 | -8.615850e-47 |
| Msa0796110 | Msa0941420 | 0.810346 | 1.206873e-50 | -8.615850e-47 |
| Msa0796110 | Msa0945160 | 0.811746 | 6.001800e-51 | -8.615850e-47 |
| Msa0796110 | Msa0971100 | 0.800850 | 1.187817e-48 | -8.615850e-47 |
| Msa0796110 | Msa0978540 | 0.819003 | 1.459126e-52 | -8.615850e-47 |
| Msa0796110 | Msa0978550 | 0.814536 | 1.465876e-51 | -8.615850e-47 |
| Msa0796110 | Msa0978560 | 0.813315 | 2.723248e-51 | -8.615850e-47 |
| Msa0796110 | Msa1002550 | 0.815118 | 1.089160e-51 | -8.615850e-47 |
| Msa0796110 | Msa1031190 | 0.812864 | 3.421303e-51 | -8.615850e-47 |
| Msa0796110 | Msa1047390 | 0.801748 | 7.776586e-49 | -8.615850e-47 |
| Msa0796110 | Msa1058550 | 0.810685 | 1.019359e-50 | -8.615850e-47 |
| Msa0796110 | Msa1068010 | 0.806220 | 9.141608e-50 | -8.615850e-47 |
| Msa0796110 | Msa1070370 | 0.815211 | 1.038478e-51 | -8.615850e-47 |
| Msa0796110 | Msa1119420 | 0.812287 | 4.574479e-51 | -8.615850e-47 |
| Msa0796110 | Msa1130150 | 0.808056 | 3.735986e-50 | -8.615850e-47 |
| Msa0796110 | Msa1132740 | 0.970171 | 3.256104e-131 | -8.615850e-47 |
| Msa0796110 | Msa1134800 | 0.801195 | 1.009550e-48 | -8.615850e-47 |
| Msa0796110 | Msa1156100 | 0.800439 | 1.440520e-48 | -8.615850e-47 |
| Msa0796110 | Msa1158180 | 0.811813 | 5.801762e-51 | -8.615850e-47 |
| Msa0796110 | Msa1175340 | 0.817294 | 3.553609e-52 | -8.615850e-47 |
| Msa0796110 | Msa1197740 | 0.824108 | 9.649821e-54 | -8.615850e-47 |
| Msa0796110 | Msa1199700 | 0.800917 | 1.150627e-48 | -8.615850e-47 |
| Msa0796110 | Msa1211930 | 0.815591 | 8.546669e-52 | -8.615850e-47 |
| Msa0796110 | Msa1212210 | 0.800629 | 1.317670e-48 | -8.615850e-47 |
| Msa0796110 | Msa1225280 | 0.815009 | 1.151164e-51 | -8.615850e-47 |
| Msa0796110 | Msa1244940 | 0.805537 | 1.272534e-49 | -8.615850e-47 |
| Msa0796110 | Msa1251440 | 0.818204 | 2.214770e-52 | -8.615850e-47 |
| Msa0796110 | Msa1263600 | 0.802297 | 5.997820e-49 | -8.615850e-47 |
| Msa0796110 | Msa1266750 | 0.805683 | 1.185949e-49 | -8.615850e-47 |
| Msa0796110 | Msa1269730 | 0.801349 | 9.390788e-49 | -8.615850e-47 |
| Msa0796110 | Msa1279250 | 0.803778 | 2.963982e-49 | -8.615850e-47 |
| Msa0796110 | Msa1290090 | 0.802124 | 6.511979e-49 | -8.615850e-47 |
| Msa0796110 | Msa1292060 | 0.801707 | 7.928489e-49 | -8.615850e-47 |
| Msa0796110 | Msa1297550 | 0.812071 | 5.097961e-51 | -8.615850e-47 |
| Msa0796110 | Msa1303040 | 0.810858 | 9.353146e-51 | -8.615850e-47 |
| Msa0796110 | Msa1303690 | 0.815973 | 7.024864e-52 | -8.615850e-47 |
| Msa0796110 | Msa1325260 | 0.806015 | 1.009707e-49 | -8.615850e-47 |
| Msa0796110 | Msa1334690 | 0.820639 | 6.167762e-53 | -8.615850e-47 |
| Msa0796110 | Msa1338810 | 0.807987 | 3.864331e-50 | -8.615850e-47 |
| Msa0796110 | Msa1341710 | 0.800434 | 1.443725e-48 | -8.615850e-47 |
| Msa0796110 | Msa1350130 | 0.812763 | 3.599743e-51 | -8.615850e-47 |
| Msa0796110 | Msa1363170 | 0.818226 | 2.189429e-52 | -8.615850e-47 |
| Msa0796110 | Msa1372460 | 0.803665 | 3.127446e-49 | -8.615850e-47 |
| Msa0796110 | Msa1373420 | 0.808172 | 3.529163e-50 | -8.615850e-47 |
| Msa0796110 | Msa1375120 | 0.800452 | 1.431776e-48 | -8.615850e-47 |
| Msa0796110 | Msa1375650 | 0.805480 | 1.307952e-49 | -8.615850e-47 |
| Msa0796110 | Msa1376510 | 0.812706 | 3.704986e-51 | -8.615850e-47 |
| Msa0796110 | Msa1386820 | 0.826890 | 2.115785e-54 | -8.615850e-47 |
| Msa0796110 | Msa1388010 | 0.801987 | 6.946898e-49 | -8.615850e-47 |
| Msa0796110 | Msa1407160 | 0.806256 | 8.983424e-50 | -8.615850e-47 |
| Msa0796110 | Msa1408230 | 0.801017 | 1.097993e-48 | -8.615850e-47 |
| Msa0796110 | Msa1415510 | 0.807344 | 5.292976e-50 | -8.615850e-47 |
| Msa0796110 | Msa1423560 | 0.803023 | 4.248630e-49 | -8.615850e-47 |
| Msa0796110 | Msa1425530 | 0.800143 | 1.655150e-48 | -8.615850e-47 |
| Msa0796110 | Msa1439000 | 0.812800 | 3.533501e-51 | -8.615850e-47 |
| Msa0796110 | Msa1460340 | 0.820559 | 6.433046e-53 | -8.615850e-47 |
| Msa0796110 | Msa1462700 | 0.820402 | 6.992308e-53 | -8.615850e-47 |
| Msa0122930 | Msa0796110 | 0.808111 | 3.635682e-50 | -8.615850e-47 |
| Msa0124460 | Msa0796110 | 0.812893 | 3.370580e-51 | -8.615850e-47 |
| Msa0127110 | Msa0796110 | 0.807026 | 6.181083e-50 | -8.615850e-47 |
| Msa0133140 | Msa0796110 | 0.800500 | 1.399863e-48 | -8.615850e-47 |
| Msa0145990 | Msa0796110 | 0.810187 | 1.305850e-50 | -8.615850e-47 |
| Msa0167570 | Msa0796110 | 0.800273 | 1.557311e-48 | -8.615850e-47 |
| Msa0168470 | Msa0796110 | 0.806194 | 9.261194e-50 | -8.615850e-47 |
| Msa0168950 | Msa0796110 | 0.806890 | 6.604526e-50 | -8.615850e-47 |
| Msa0185540 | Msa0796110 | 0.818923 | 1.521398e-52 | -8.615850e-47 |
| Msa0231180 | Msa0796110 | 0.809790 | 1.589518e-50 | -8.615850e-47 |
| Msa0377990 | Msa0796110 | 0.803057 | 4.179522e-49 | -8.615850e-47 |
| Msa0380470 | Msa0796110 | 0.801924 | 7.155350e-49 | -8.615850e-47 |
| Msa0386230 | Msa0796110 | 0.814888 | 1.224812e-51 | -8.615850e-47 |
| Msa0404710 | Msa0796110 | 0.810869 | 9.301871e-51 | -8.615850e-47 |
| Msa0427600 | Msa0796110 | 0.800515 | 1.389936e-48 | -8.615850e-47 |
| Msa0428280 | Msa0796110 | 0.818630 | 1.773132e-52 | -8.615850e-47 |
| Msa0429990 | Msa0796110 | 0.801095 | 1.058463e-48 | -8.615850e-47 |
| Msa0436660 | Msa0796110 | 0.805792 | 1.124854e-49 | -8.615850e-47 |
| Msa0437820 | Msa0796110 | 0.804445 | 2.152793e-49 | -8.615850e-47 |
| Msa0439090 | Msa0796110 | 0.800921 | 1.148489e-48 | -8.615850e-47 |
| Msa0444770 | Msa0796110 | 0.803498 | 3.387415e-49 | -8.615850e-47 |
| Msa0462530 | Msa0796110 | 0.808314 | 3.292147e-50 | -8.615850e-47 |
| Msa0474290 | Msa0796110 | 0.809404 | 1.924070e-50 | -8.615850e-47 |
| Msa0476140 | Msa0796110 | 0.822006 | 2.984244e-53 | -8.615850e-47 |
| Msa0247340 | Msa0796110 | 0.801842 | 7.440847e-49 | -8.615850e-47 |
| Msa0253320 | Msa0796110 | 0.815249 | 1.018332e-51 | -8.615850e-47 |
| Msa0261020 | Msa0796110 | 0.807396 | 5.158970e-50 | -8.615850e-47 |
| Msa0266330 | Msa0796110 | 0.800116 | 1.676053e-48 | -8.615850e-47 |
| Msa0269610 | Msa0796110 | 0.809914 | 1.494959e-50 | -8.615850e-47 |
| Msa0290590 | Msa0796110 | 0.802829 | 4.658533e-49 | -8.615850e-47 |
| Msa0293060 | Msa0796110 | 0.810773 | 9.756275e-51 | -8.615850e-47 |
| Msa0296100 | Msa0796110 | 0.805866 | 1.085634e-49 | -8.615850e-47 |
| Msa0298820 | Msa0796110 | 0.813624 | 2.329070e-51 | -8.615850e-47 |
| Msa0317820 | Msa0796110 | 0.813456 | 2.536513e-51 | -8.615850e-47 |
| Msa0329050 | Msa0796110 | 0.822051 | 2.913583e-53 | -8.615850e-47 |
| Msa0341950 | Msa0796110 | 0.802489 | 5.477163e-49 | -8.615850e-47 |
| Msa0500580 | Msa0796110 | 0.803037 | 4.220321e-49 | -8.615850e-47 |
| Msa0506700 | Msa0796110 | 0.810007 | 1.427482e-50 | -8.615850e-47 |
| Msa0518150 | Msa0796110 | 0.805431 | 1.339084e-49 | -8.615850e-47 |
| Msa0518720 | Msa0796110 | 0.812147 | 4.907047e-51 | -8.615850e-47 |
| Msa0519090 | Msa0796110 | 0.806631 | 7.489825e-50 | -8.615850e-47 |
| Msa0550820 | Msa0796110 | 0.803209 | 3.887546e-49 | -8.615850e-47 |
| Msa0550980 | Msa0796110 | 0.802113 | 6.543544e-49 | -8.615850e-47 |
| Msa0552920 | Msa0796110 | 0.804537 | 2.059564e-49 | -8.615850e-47 |
| Msa0557440 | Msa0796110 | 0.801406 | 9.139933e-49 | -8.615850e-47 |
| Msa0561450 | Msa0796110 | 0.816413 | 5.601430e-52 | -8.615850e-47 |
| Msa0562040 | Msa0796110 | 0.808319 | 3.284170e-50 | -8.615850e-47 |
| Msa0580890 | Msa0796110 | 0.803406 | 3.539409e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAAACAAGCTCACTTAA+AGG | 0.194628 | 5_3:-8170947 | Msa0796110:three_prime_UTR |
| GGTGATAATGGTATAATATA+TGG | 0.241626 | 5_3:+8170778 | None:intergenic |
| GCATGTACCTTTATATTTGA+TGG | 0.261955 | 5_3:+8170832 | None:intergenic |
| TCAAAGTTTGTATTGTATCT+AGG | 0.321676 | 5_3:-8170865 | Msa0796110:three_prime_UTR |
| AACAAAATACCATTTCAATA+AGG | 0.346795 | 5_3:-8174534 | Msa0796110:intron |
| TTAATCCAACCTTATTGAAA+TGG | 0.377715 | 5_3:+8174525 | None:intergenic |
| TTGTATGAATGTCTAGGTTC+AGG | 0.383294 | 5_3:+8174681 | None:intergenic |
| TTGAGTAGTAATGGTGATAA+TGG | 0.383843 | 5_3:+8170766 | None:intergenic |
| TCTTCAACATTGTGCTGAGC+TGG | 0.397887 | 5_3:+8171117 | None:intergenic |
| GAAGGGATGGCGTACCCGTT+TGG | 0.408175 | 5_3:+8173617 | None:intergenic |
| AAGTAAACCATCAAATATAA+AGG | 0.416876 | 5_3:-8170839 | Msa0796110:three_prime_UTR |
| CATGGTTGTGCAGGCTGAAA+GGG | 0.439466 | 5_3:-8171163 | Msa0796110:intron |
| GTGATAATGGTATAATATAT+GGG | 0.448383 | 5_3:+8170779 | None:intergenic |
| GGGACATGCAAGGTCAATGC+TGG | 0.458452 | 5_3:-8171142 | Msa0796110:CDS |
| TGCAGGGTCAACTTTCCAAA+CGG | 0.463339 | 5_3:-8173632 | Msa0796110:intron |
| TATGTCCTCTGCATTCTCAT+TGG | 0.469408 | 5_3:+8171077 | None:intergenic |
| TAAAATGCAATACAAGAGTA+AGG | 0.477807 | 5_3:+8174650 | None:intergenic |
| ATTAGACAATGTTAAATTGT+CGG | 0.482811 | 5_3:-8174177 | Msa0796110:CDS |
| GCAGGGTCAACTTTCCAAAC+GGG | 0.494200 | 5_3:-8173631 | Msa0796110:intron |
| CAAGGTTTGTATGAATGTCT+AGG | 0.501665 | 5_3:+8174675 | None:intergenic |
| ATATTACCTTTGCTGCAAGA+AGG | 0.508485 | 5_3:+8173599 | None:intergenic |
| AAACATAATTTGAGTAGTAA+TGG | 0.510535 | 5_3:+8170757 | None:intergenic |
| GCAAAGAACCACAGAGGATG+AGG | 0.512478 | 5_3:+8174594 | None:intergenic |
| TATTACCTTTGCTGCAAGAA+GGG | 0.517311 | 5_3:+8173600 | None:intergenic |
| GTTAACTACATTAAGTGTAA+AGG | 0.521339 | 5_3:-8174150 | Msa0796110:CDS |
| GCCATCCCTTCTTGCAGCAA+AGG | 0.535432 | 5_3:-8173605 | Msa0796110:intron |
| ACCTTTGCTGCAAGAAGGGA+TGG | 0.535458 | 5_3:+8173604 | None:intergenic |
| ATTCTCATACAACATCCAAA+AGG | 0.541165 | 5_3:+8170907 | None:intergenic |
| AGGATGAGGAGCAGAAGAAG+AGG | 0.541757 | 5_3:+8174608 | None:intergenic |
| AGGATTATGCACAACCTCAT+CGG | 0.565341 | 5_3:-8171050 | Msa0796110:CDS |
| TGTAAAGGATAATAAGCTAG+AGG | 0.587951 | 5_3:-8174135 | Msa0796110:CDS |
| GATAATGGTATAATATATGG+GGG | 0.590897 | 5_3:+8170781 | None:intergenic |
| ACATGGTTGTGCAGGCTGAA+AGG | 0.598698 | 5_3:-8171164 | Msa0796110:intron |
| CTTCTGCTCCTCATCCTCTG+TGG | 0.599025 | 5_3:-8174602 | Msa0796110:CDS |
| TGATAATGGTATAATATATG+GGG | 0.602274 | 5_3:+8170780 | None:intergenic |
| AGGTACATGCAATACTGCAT+TGG | 0.604721 | 5_3:-8170819 | Msa0796110:three_prime_UTR |
| GCACAATGTTGAAGAAACAA+TGG | 0.606943 | 5_3:-8171109 | Msa0796110:CDS |
| CAATACAAGAGTAAGGCTCA+AGG | 0.610585 | 5_3:+8174657 | None:intergenic |
| ATGGTTGTGCAGGCTGAAAG+GGG | 0.610618 | 5_3:-8171162 | Msa0796110:intron |
| GGACATGCAAGGTCAATGCT+GGG | 0.614579 | 5_3:-8171141 | Msa0796110:CDS |
| TGAATAGGTGCTTTCCGATG+AGG | 0.626859 | 5_3:+8171036 | None:intergenic |
| GAATGCAGAGGACATAGTCG+AGG | 0.680802 | 5_3:-8171070 | Msa0796110:CDS |
| ACTTTGAAGAAAGTGATCGT+AGG | 0.682204 | 5_3:-8174041 | Msa0796110:intron |
| ATAATGGTATAATATATGGG+GGG | 0.694060 | 5_3:+8170782 | None:intergenic |
| AAACACCAATGAGAATGCAG+AGG | 0.695538 | 5_3:-8171082 | Msa0796110:CDS |
| AGGCTGAAAGGGGACATGCA+AGG | 0.696024 | 5_3:-8171152 | Msa0796110:CDS |
| ATGCATGCAAAGAACCACAG+AGG | 0.789583 | 5_3:+8174588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAAAAAAAAAATTTG+AGG | - | chr5_3:8171072-8171091 | Msa0796110:CDS | 10.0% |
| !!! | ATTTATATACATTGTTTTTA+GGG | + | chr5_3:8172397-8172416 | None:intergenic | 10.0% |
| !!! | AATTTATATACATTGTTTTT+AGG | + | chr5_3:8172398-8172417 | None:intergenic | 10.0% |
| !! | AAAAAAATATTAAAAATGCT+AGG | + | chr5_3:8173718-8173737 | None:intergenic | 10.0% |
| !!! | TAGTATATCTTTTTTTTTTT+AGG | - | chr5_3:8173815-8173834 | Msa0796110:intron | 10.0% |
| !!! | AGTATATCTTTTTTTTTTTA+GGG | - | chr5_3:8173816-8173835 | Msa0796110:intron | 10.0% |
| !! | CATGTTAATATTAATATTAA+AGG | - | chr5_3:8174047-8174066 | Msa0796110:CDS | 10.0% |
| !! | TAGATAGTTATAAACTTATA+AGG | + | chr5_3:8170986-8171005 | None:intergenic | 15.0% |
| !! | TAAAATTTGTGATTATATTC+AGG | - | chr5_3:8171273-8171292 | Msa0796110:intron | 15.0% |
| !! | TTATTACTAAATTATTGCTA+AGG | - | chr5_3:8171678-8171697 | Msa0796110:intron | 15.0% |
| !! | TTACAATAAGCATAAATTAT+TGG | + | chr5_3:8171757-8171776 | None:intergenic | 15.0% |
| !! | AAAAAAATAGAATATTCAAG+AGG | - | chr5_3:8172135-8172154 | Msa0796110:intron | 15.0% |
| !! | TAAAAAAAATGAAATCCAAA+AGG | + | chr5_3:8172239-8172258 | None:intergenic | 15.0% |
| !! | TCAAAAAAGATTGAAATTAA+AGG | - | chr5_3:8172262-8172281 | Msa0796110:intron | 15.0% |
| !! | AATAATAGTAGTAAATGATT+GGG | + | chr5_3:8172738-8172757 | None:intergenic | 15.0% |
| !! | AAATAATAGTAGTAAATGAT+TGG | + | chr5_3:8172739-8172758 | None:intergenic | 15.0% |
| !!! | TTAATCAATTTTTCTTGTTA+AGG | - | chr5_3:8172810-8172829 | Msa0796110:intron | 15.0% |
| !! | TAATATTAACATGATTCAAT+GGG | + | chr5_3:8174040-8174059 | None:intergenic | 15.0% |
| !! | TTAATATTAACATGATTCAA+TGG | + | chr5_3:8174041-8174060 | None:intergenic | 15.0% |
| !! | AACAAAATACCATTTCAATA+AGG | - | chr5_3:8170940-8170959 | Msa0796110:three_prime_UTR | 20.0% |
| !!! | ATCCTTCTATCTATTTTTTT+CGG | - | chr5_3:8171021-8171040 | Msa0796110:CDS | 20.0% |
| !! | ATTAGACAATGTTAAATTGT+CGG | - | chr5_3:8171297-8171316 | Msa0796110:intron | 20.0% |
| !! | TTTATTTGCATAGAAAACAA+AGG | + | chr5_3:8171596-8171615 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGAAATTTTGCAT+TGG | - | chr5_3:8171721-8171740 | Msa0796110:intron | 20.0% |
| !! | TATATCTCCACATTATATAT+AGG | - | chr5_3:8172044-8172063 | Msa0796110:intron | 20.0% |
| !! | ATATCTCCACATTATATATA+GGG | - | chr5_3:8172045-8172064 | Msa0796110:intron | 20.0% |
| !! | TTGAATGAAACAAAAAAAAG+AGG | - | chr5_3:8172078-8172097 | Msa0796110:intron | 20.0% |
| !! | AATGCTAGTTATTTAGAAAA+TGG | + | chr5_3:8172326-8172345 | None:intergenic | 20.0% |
| !! | TTGATCAATAATGATATCAT+CGG | + | chr5_3:8172869-8172888 | None:intergenic | 20.0% |
| !! | AAAAAAAATGAAGGAGTAAA+TGG | + | chr5_3:8173272-8173291 | None:intergenic | 20.0% |
| !! | CTATGTATAACGAATTATAA+CGG | - | chr5_3:8173559-8173578 | Msa0796110:intron | 20.0% |
| !!! | TGTTAATTTTGATTGGTTTA+TGG | - | chr5_3:8173935-8173954 | Msa0796110:intron | 20.0% |
| !!! | GTTAATTTTGATTGGTTTAT+GGG | - | chr5_3:8173936-8173955 | Msa0796110:intron | 20.0% |
| !!! | TTTTTAGTAAGTTATTGCAA+AGG | + | chr5_3:8174005-8174024 | None:intergenic | 20.0% |
| !! | AATATTAACATGATTCAATG+GGG | + | chr5_3:8174039-8174058 | None:intergenic | 20.0% |
| !! | AAACTCCAAAAAAATTAACA+TGG | - | chr5_3:8174154-8174173 | Msa0796110:CDS | 20.0% |
| !! | AAGTAAACCATCAAATATAA+AGG | - | chr5_3:8174635-8174654 | Msa0796110:exon | 20.0% |
| !!! | TGATAATGGTATAATATATG+GGG | + | chr5_3:8174697-8174716 | None:intergenic | 20.0% |
| !!! | GTGATAATGGTATAATATAT+GGG | + | chr5_3:8174698-8174717 | None:intergenic | 20.0% |
| ! | TAAAATGCAATACAAGAGTA+AGG | + | chr5_3:8170827-8170846 | None:intergenic | 25.0% |
| !! | TATTGCATTTTATCTCAACA+TGG | - | chr5_3:8170835-8170854 | Msa0796110:three_prime_UTR | 25.0% |
| ! | AAATACCATTTCAATAAGGT+TGG | - | chr5_3:8170944-8170963 | Msa0796110:three_prime_UTR | 25.0% |
| ! | TTAATCCAACCTTATTGAAA+TGG | + | chr5_3:8170952-8170971 | None:intergenic | 25.0% |
| ! | AAATTTGAGGAAAAAATTGC+AGG | - | chr5_3:8171085-8171104 | Msa0796110:CDS | 25.0% |
| !!! | TTCATATACTCATTTTTCAG+TGG | + | chr5_3:8171129-8171148 | None:intergenic | 25.0% |
| ! | GTTAACTACATTAAGTGTAA+AGG | - | chr5_3:8171324-8171343 | Msa0796110:intron | 25.0% |
| ! | AAATAGAATATTCAAGAGGT+TGG | - | chr5_3:8172139-8172158 | Msa0796110:intron | 25.0% |
| ! | GCATTATAAACATAAACACA+AGG | - | chr5_3:8172209-8172228 | Msa0796110:intron | 25.0% |
| ! | TTATTTAGAAAATGGATACG+TGG | + | chr5_3:8172318-8172337 | None:intergenic | 25.0% |
| !! | ACAAAATAGAGGATTTTCAA+TGG | + | chr5_3:8172607-8172626 | None:intergenic | 25.0% |
| ! | TGTTACACAAAATAACCAAA+AGG | + | chr5_3:8172644-8172663 | None:intergenic | 25.0% |
| !!! | TTTGGTTATTTTGTGTAACA+AGG | - | chr5_3:8172644-8172663 | Msa0796110:intron | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | + | chr5_3:8173171-8173190 | None:intergenic | 25.0% |
| ! | AGGGAACTAAAAAATTGTAT+TGG | + | chr5_3:8173174-8173193 | None:intergenic | 25.0% |
| ! | AAAAAGAGCAATTCATCTTA+TGG | - | chr5_3:8173441-8173460 | Msa0796110:intron | 25.0% |
| ! | GCACATGTATAATAAATCAT+TGG | - | chr5_3:8173499-8173518 | Msa0796110:intron | 25.0% |
| ! | TCAAAATGTTAACCTTGATT+TGG | - | chr5_3:8173525-8173544 | Msa0796110:intron | 25.0% |
| !! | CAAATGTGATGTTTTACTAT+AGG | - | chr5_3:8173759-8173778 | Msa0796110:intron | 25.0% |
| ! | CTATCCATTATTCTTCAAAA+GGG | + | chr5_3:8173798-8173817 | None:intergenic | 25.0% |
| ! | ACTATCCATTATTCTTCAAA+AGG | + | chr5_3:8173799-8173818 | None:intergenic | 25.0% |
| ! | TATTAATATTAAAGGCCACA+TGG | - | chr5_3:8174055-8174074 | Msa0796110:CDS | 25.0% |
| !!! | TCACACCATGTTAATTTTTT+TGG | + | chr5_3:8174162-8174181 | None:intergenic | 25.0% |
| !!! | CTTTATTAGTTTTAGCCTTT+TGG | - | chr5_3:8174552-8174571 | Msa0796110:CDS | 25.0% |
| ! | TCAAAGTTTGTATTGTATCT+AGG | - | chr5_3:8174609-8174628 | Msa0796110:CDS | 25.0% |
| ! | ATAATGGTATAATATATGGG+GGG | + | chr5_3:8174695-8174714 | None:intergenic | 25.0% |
| !! | GATAATGGTATAATATATGG+GGG | + | chr5_3:8174696-8174715 | None:intergenic | 25.0% |
| !!! | GGTGATAATGGTATAATATA+TGG | + | chr5_3:8174699-8174718 | None:intergenic | 25.0% |
| GACCGAAAAAAATAGATAGA+AGG | + | chr5_3:8171026-8171045 | None:intergenic | 30.0% | |
| ! | CTACGTGCAATTTTGTAATT+TGG | + | chr5_3:8171052-8171071 | None:intergenic | 30.0% |
| TGTAAAGGATAATAAGCTAG+AGG | - | chr5_3:8171339-8171358 | Msa0796110:intron | 30.0% | |
| CAACTAACAACAATCAACAA+GGG | + | chr5_3:8171476-8171495 | None:intergenic | 30.0% | |
| ACAACTAACAACAATCAACA+AGG | + | chr5_3:8171477-8171496 | None:intergenic | 30.0% | |
| ! | ATCTGACTTTTGTTAATGTG+AGG | - | chr5_3:8171616-8171635 | Msa0796110:intron | 30.0% |
| TGAGGTTCATACATAATCTA+TGG | - | chr5_3:8171634-8171653 | Msa0796110:intron | 30.0% | |
| TACATAATCTATGGTGTACT+TGG | - | chr5_3:8171643-8171662 | Msa0796110:intron | 30.0% | |
| !! | TTTAGAAATTTTGCATTGGC+TGG | - | chr5_3:8171725-8171744 | Msa0796110:intron | 30.0% |
| ATCTCACCCTATATATAATG+TGG | + | chr5_3:8172054-8172073 | None:intergenic | 30.0% | |
| ! | TAAACACAAGGAATACCTTT+TGG | - | chr5_3:8172221-8172240 | Msa0796110:intron | 30.0% |
| ATCAATAATGATATCATCGG+TGG | + | chr5_3:8172866-8172885 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGTTCCCTCAAATG+AGG | - | chr5_3:8173180-8173199 | Msa0796110:intron | 30.0% |
| AAGGCTTGGAAAAAAAATGA+AGG | + | chr5_3:8173281-8173300 | None:intergenic | 30.0% | |
| AAATCCTTTGAATCATGTAG+AGG | - | chr5_3:8173337-8173356 | Msa0796110:intron | 30.0% | |
| TATACCTCTACATGATTCAA+AGG | + | chr5_3:8173344-8173363 | None:intergenic | 30.0% | |
| ! | TTTGAATCATGTAGAGGTAT+AGG | - | chr5_3:8173343-8173362 | Msa0796110:intron | 30.0% |
| ! | GATTTGATTTCTCCAAATCA+AGG | + | chr5_3:8173540-8173559 | None:intergenic | 30.0% |
| AACCTCTCAAAAAGATTCTA+CGG | - | chr5_3:8173687-8173706 | Msa0796110:intron | 30.0% | |
| !! | GATTCCCTTTTGAAGAATAA+TGG | - | chr5_3:8173791-8173810 | Msa0796110:intron | 30.0% |
| !! | ACTCGTGTGTTAATTTTGAT+TGG | - | chr5_3:8173928-8173947 | Msa0796110:intron | 30.0% |
| ! | CAATTTGAAATGAAACCATG+TGG | + | chr5_3:8174073-8174092 | None:intergenic | 30.0% |
| ATATATACACACGTGTTTGT+TGG | - | chr5_3:8174251-8174270 | Msa0796110:intron | 30.0% | |
| TTACAAACAAGCTCACTTAA+AGG | - | chr5_3:8174527-8174546 | Msa0796110:intron | 30.0% | |
| ATTCTCATACAACATCCAAA+AGG | + | chr5_3:8174570-8174589 | None:intergenic | 30.0% | |
| GCATGTACCTTTATATTTGA+TGG | + | chr5_3:8174645-8174664 | None:intergenic | 30.0% | |
| TTGAGTAGTAATGGTGATAA+TGG | + | chr5_3:8174711-8174730 | None:intergenic | 30.0% | |
| TTGTATGAATGTCTAGGTTC+AGG | + | chr5_3:8170796-8170815 | None:intergenic | 35.0% | |
| CAAGGTTTGTATGAATGTCT+AGG | + | chr5_3:8170802-8170821 | None:intergenic | 35.0% | |
| !!! | GTTGTGTCTTTTTCAGTAAG+AGG | + | chr5_3:8170923-8170942 | None:intergenic | 35.0% |
| ! | ACTTTGAAGAAAGTGATCGT+AGG | - | chr5_3:8171433-8171452 | Msa0796110:intron | 35.0% |
| GCAAGGGACAAAAAATTATG+GGG | + | chr5_3:8171574-8171593 | None:intergenic | 35.0% | |
| GGCAAGGGACAAAAAATTAT+GGG | + | chr5_3:8171575-8171594 | None:intergenic | 35.0% | |
| AGGCAAGGGACAAAAAATTA+TGG | + | chr5_3:8171576-8171595 | None:intergenic | 35.0% | |
| TGCATAGAAAACAAAGGCAA+GGG | + | chr5_3:8171590-8171609 | None:intergenic | 35.0% | |
| TTGCATAGAAAACAAAGGCA+AGG | + | chr5_3:8171591-8171610 | None:intergenic | 35.0% | |
| TGAGTCGATATTCAATTGCA+GGG | - | chr5_3:8171826-8171845 | Msa0796110:intron | 35.0% | |
| TATTACCTTTGCTGCAAGAA+GGG | + | chr5_3:8171877-8171896 | None:intergenic | 35.0% | |
| ATATTACCTTTGCTGCAAGA+AGG | + | chr5_3:8171878-8171897 | None:intergenic | 35.0% | |
| !! | GAATATTCAAGAGGTTGGTA+AGG | - | chr5_3:8172144-8172163 | Msa0796110:intron | 35.0% |
| !!! | AGTGAGCTGACTTGAAATTT+TGG | - | chr5_3:8172187-8172206 | Msa0796110:intron | 35.0% |
| ! | ATTGTGAAACAGTTTTACCC+CGG | - | chr5_3:8172575-8172594 | Msa0796110:intron | 35.0% |
| CAAAATAACCAAAAGGAGTG+AGG | + | chr5_3:8172637-8172656 | None:intergenic | 35.0% | |
| ATCATCGGTGGATCAAATTT+GGG | + | chr5_3:8172854-8172873 | None:intergenic | 35.0% | |
| TATCATCGGTGGATCAAATT+TGG | + | chr5_3:8172855-8172874 | None:intergenic | 35.0% | |
| AAGGGCAAAAGTTTCATTCT+AGG | + | chr5_3:8172935-8172954 | None:intergenic | 35.0% | |
| ! | GAATGAAACTTTTGCCCTTA+AGG | - | chr5_3:8172936-8172955 | Msa0796110:intron | 35.0% |
| ACTCTCAAACAAAGCCTTAA+GGG | + | chr5_3:8172953-8172972 | None:intergenic | 35.0% | |
| AACTCTCAAACAAAGCCTTA+AGG | + | chr5_3:8172954-8172973 | None:intergenic | 35.0% | |
| !! | GCTTTGTTTGAGAGTTTGAA+GGG | - | chr5_3:8172958-8172977 | Msa0796110:intron | 35.0% |
| ! | ATTGGAGGAGAGTTTTTGAA+GGG | + | chr5_3:8173156-8173175 | None:intergenic | 35.0% |
| ! | TATTGGAGGAGAGTTTTTGA+AGG | + | chr5_3:8173157-8173176 | None:intergenic | 35.0% |
| ATAAAACCCTCCTCATTTGA+GGG | + | chr5_3:8173193-8173212 | None:intergenic | 35.0% | |
| TATAAAACCCTCCTCATTTG+AGG | + | chr5_3:8173194-8173213 | None:intergenic | 35.0% | |
| AGAAATAGAGGACATTTGGA+AGG | + | chr5_3:8173248-8173267 | None:intergenic | 35.0% | |
| TGGAAGAAATAGAGGACATT+TGG | + | chr5_3:8173252-8173271 | None:intergenic | 35.0% | |
| GGAGTAAATGGAAGAAATAG+AGG | + | chr5_3:8173260-8173279 | None:intergenic | 35.0% | |
| !! | TTAAGCTTTGTTTGCGAGTT+TGG | + | chr5_3:8173314-8173333 | None:intergenic | 35.0% |
| ! | AATCATGTAGAGGTATAGGT+AGG | - | chr5_3:8173347-8173366 | Msa0796110:intron | 35.0% |
| TAAACAAACCCATGAAGCAT+AGG | + | chr5_3:8173662-8173681 | None:intergenic | 35.0% | |
| ACCTCTCAAAAAGATTCTAC+GGG | - | chr5_3:8173688-8173707 | Msa0796110:intron | 35.0% | |
| !!! | TTTTTGGAGTTTCCTTACGT+CGG | + | chr5_3:8174146-8174165 | None:intergenic | 35.0% |
| TGATAGAAAACGATGAGACA+TGG | - | chr5_3:8174293-8174312 | Msa0796110:intron | 35.0% | |
| GCACAATGTTGAAGAAACAA+TGG | - | chr5_3:8174365-8174384 | Msa0796110:intron | 35.0% | |
| ! | CATGGCTTTTCATTGTGAAT+AGG | + | chr5_3:8174456-8174475 | None:intergenic | 35.0% |
| ! | ATTTTCAGTACAGTGAGTCA+TGG | + | chr5_3:8174474-8174493 | None:intergenic | 35.0% |
| CAATACAAGAGTAAGGCTCA+AGG | + | chr5_3:8170820-8170839 | None:intergenic | 40.0% | |
| !! | TTTTTCAGTAAGAGGACGAG+GGG | + | chr5_3:8170915-8170934 | None:intergenic | 40.0% |
| !!! | CTTTTTCAGTAAGAGGACGA+GGG | + | chr5_3:8170916-8170935 | None:intergenic | 40.0% |
| !!! | TCTTTTTCAGTAAGAGGACG+AGG | + | chr5_3:8170917-8170936 | None:intergenic | 40.0% |
| GTGAGTCGATATTCAATTGC+AGG | - | chr5_3:8171825-8171844 | Msa0796110:intron | 40.0% | |
| ! | TTGTGAAACAGTTTTACCCC+GGG | - | chr5_3:8172576-8172595 | Msa0796110:intron | 40.0% |
| ! | ATTTTCAATGGATGTTCCCG+GGG | + | chr5_3:8172595-8172614 | None:intergenic | 40.0% |
| ! | GATTTTCAATGGATGTTCCC+GGG | + | chr5_3:8172596-8172615 | None:intergenic | 40.0% |
| ! | GGATTTTCAATGGATGTTCC+CGG | + | chr5_3:8172597-8172616 | None:intergenic | 40.0% |
| GAGGTAGTGTGACAAAATAG+AGG | + | chr5_3:8172618-8172637 | None:intergenic | 40.0% | |
| !! | GGCTTTGTTTGAGAGTTTGA+AGG | - | chr5_3:8172957-8172976 | Msa0796110:intron | 40.0% |
| TGTTTGAGAGTTTGAAGGGA+AGG | - | chr5_3:8172962-8172981 | Msa0796110:intron | 40.0% | |
| GTTTGAGAGTTTGAAGGGAA+GGG | - | chr5_3:8172963-8172982 | Msa0796110:intron | 40.0% | |
| TTTGAGAGTTTGAAGGGAAG+GGG | - | chr5_3:8172964-8172983 | Msa0796110:intron | 40.0% | |
| ! | ACTTTGGGGGAGAGAAATAT+AGG | - | chr5_3:8172995-8173014 | Msa0796110:intron | 40.0% |
| ! | TTTAGTTCCCTCAAATGAGG+AGG | - | chr5_3:8173183-8173202 | Msa0796110:intron | 40.0% |
| TTAGTTCCCTCAAATGAGGA+GGG | - | chr5_3:8173184-8173203 | Msa0796110:intron | 40.0% | |
| ! | ATGTAGAGGTATAGGTAGGT+AGG | - | chr5_3:8173351-8173370 | Msa0796110:intron | 40.0% |
| !! | ACCCGTAGAATCTTTTTGAG+AGG | + | chr5_3:8173692-8173711 | None:intergenic | 40.0% |
| AAACACCAATGAGAATGCAG+AGG | - | chr5_3:8174392-8174411 | Msa0796110:intron | 40.0% | |
| TATGTCCTCTGCATTCTCAT+TGG | + | chr5_3:8174400-8174419 | None:intergenic | 40.0% | |
| AGGATTATGCACAACCTCAT+CGG | - | chr5_3:8174424-8174443 | Msa0796110:intron | 40.0% | |
| AGGTACATGCAATACTGCAT+TGG | - | chr5_3:8174655-8174674 | Msa0796110:five_prime_UTR | 40.0% | |
| ATGCATGCAAAGAACCACAG+AGG | + | chr5_3:8170889-8170908 | None:intergenic | 45.0% | |
| ! | GTGATTTTCTGTTGCAGAGC+TGG | + | chr5_3:8171370-8171389 | None:intergenic | 45.0% |
| TGCAGGGTCAACTTTCCAAA+CGG | - | chr5_3:8171842-8171861 | Msa0796110:intron | 45.0% | |
| ! | TCACACTACCTCACTCCTTT+TGG | - | chr5_3:8172626-8172645 | Msa0796110:intron | 45.0% |
| GAAGGGGAAGGAAAGACTTT+GGG | - | chr5_3:8172980-8172999 | Msa0796110:intron | 45.0% | |
| AAGGGGAAGGAAAGACTTTG+GGG | - | chr5_3:8172981-8173000 | Msa0796110:intron | 45.0% | |
| CATTTGGAAGGAGTGGCTTT+GGG | + | chr5_3:8173236-8173255 | None:intergenic | 45.0% | |
| ACATTTGGAAGGAGTGGCTT+TGG | + | chr5_3:8173237-8173256 | None:intergenic | 45.0% | |
| TAGAGGACATTTGGAAGGAG+TGG | + | chr5_3:8173243-8173262 | None:intergenic | 45.0% | |
| TTGGAGGGAAAAGAAAGGCT+TGG | + | chr5_3:8173295-8173314 | None:intergenic | 45.0% | |
| CGAGTTTGGAGGGAAAAGAA+AGG | + | chr5_3:8173300-8173319 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr5_3:8173310-8173329 | None:intergenic | 45.0% |
| !! | AGCTTTGTTTGCGAGTTTGG+AGG | + | chr5_3:8173311-8173330 | None:intergenic | 45.0% |
| TGCCTAAAGCCTATGCTTCA+TGG | - | chr5_3:8173650-8173669 | Msa0796110:intron | 45.0% | |
| GCCTAAAGCCTATGCTTCAT+GGG | - | chr5_3:8173651-8173670 | Msa0796110:intron | 45.0% | |
| ACCCATGAAGCATAGGCTTT+AGG | + | chr5_3:8173655-8173674 | None:intergenic | 45.0% | |
| CGTGGCTCTTGGTTTACAAT+TGG | + | chr5_3:8174108-8174127 | None:intergenic | 45.0% | |
| GTAAAACTGAACGTGGCTCT+TGG | + | chr5_3:8174119-8174138 | None:intergenic | 45.0% | |
| !! | AGTTTTACTGTGCCGACGTA+AGG | - | chr5_3:8174131-8174150 | Msa0796110:CDS | 45.0% |
| TCTTCAACATTGTGCTGAGC+TGG | + | chr5_3:8174360-8174379 | None:intergenic | 45.0% | |
| TGAATAGGTGCTTTCCGATG+AGG | + | chr5_3:8174441-8174460 | None:intergenic | 45.0% | |
| !!! | TACTATTTTTATTATTTTTT+TGG | - | chr5_3:8171503-8171522 | Msa0796110:intron | 5.0% |
| !!! | ATTATTATTTCTTTTTTTTT+TGG | + | chr5_3:8171803-8171822 | None:intergenic | 5.0% |
| AGGATGAGGAGCAGAAGAAG+AGG | + | chr5_3:8170869-8170888 | None:intergenic | 50.0% | |
| GCAAAGAACCACAGAGGATG+AGG | + | chr5_3:8170883-8170902 | None:intergenic | 50.0% | |
| GCAGGGTCAACTTTCCAAAC+GGG | - | chr5_3:8171843-8171862 | Msa0796110:intron | 50.0% | |
| ACCTTTGCTGCAAGAAGGGA+TGG | + | chr5_3:8171873-8171892 | None:intergenic | 50.0% | |
| AGAGTTTGAAGGGAAGGGGA+AGG | - | chr5_3:8172968-8172987 | Msa0796110:intron | 50.0% | |
| GGAAGGGGAAGGAAAGACTT+TGG | - | chr5_3:8172979-8172998 | Msa0796110:intron | 50.0% | |
| AGGGGAAGGAAAGACTTTGG+GGG | - | chr5_3:8172982-8173001 | Msa0796110:intron | 50.0% | |
| CGGCACAGTAAAACTGAACG+TGG | + | chr5_3:8174126-8174145 | None:intergenic | 50.0% | |
| ACGATGAGACATGGTTGTGC+AGG | - | chr5_3:8174302-8174321 | Msa0796110:intron | 50.0% | |
| ACATGGTTGTGCAGGCTGAA+AGG | - | chr5_3:8174310-8174329 | Msa0796110:intron | 50.0% | |
| CATGGTTGTGCAGGCTGAAA+GGG | - | chr5_3:8174311-8174330 | Msa0796110:intron | 50.0% | |
| ATGGTTGTGCAGGCTGAAAG+GGG | - | chr5_3:8174312-8174331 | Msa0796110:intron | 50.0% | |
| GGACATGCAAGGTCAATGCT+GGG | - | chr5_3:8174333-8174352 | Msa0796110:intron | 50.0% | |
| GAATGCAGAGGACATAGTCG+AGG | - | chr5_3:8174404-8174423 | Msa0796110:intron | 50.0% | |
| CTTCTGCTCCTCATCCTCTG+TGG | - | chr5_3:8170872-8170891 | Msa0796110:three_prime_UTR | 55.0% | |
| GCCATCCCTTCTTGCAGCAA+AGG | - | chr5_3:8171869-8171888 | Msa0796110:intron | 55.0% | |
| AGGCTGAAAGGGGACATGCA+AGG | - | chr5_3:8174322-8174341 | Msa0796110:intron | 55.0% | |
| GGGACATGCAAGGTCAATGC+TGG | - | chr5_3:8174332-8174351 | Msa0796110:intron | 55.0% | |
| GAAGGGATGGCGTACCCGTT+TGG | + | chr5_3:8171860-8171879 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8170766 | 8174730 | 8170766 | ID=Msa0796110;Name=Msa0796110 |
| chr5_3 | mRNA | 8170766 | 8174730 | 8170766 | ID=Msa0796110-mRNA-1;Parent=Msa0796110;Name=Msa0796110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=88|1|1|1|1|1|4|254|154 |
| chr5_3 | exon | 8170766 | 8171172 | 8170766 | ID=Msa0796110-mRNA-1:exon:3358;Parent=Msa0796110-mRNA-1 |
| chr5_3 | exon | 8173606 | 8173649 | 8173606 | ID=Msa0796110-mRNA-1:exon:3357;Parent=Msa0796110-mRNA-1 |
| chr5_3 | exon | 8174042 | 8174201 | 8174042 | ID=Msa0796110-mRNA-1:exon:3356;Parent=Msa0796110-mRNA-1 |
| chr5_3 | exon | 8174535 | 8174730 | 8174535 | ID=Msa0796110-mRNA-1:exon:3355;Parent=Msa0796110-mRNA-1 |
| chr5_3 | five_prime_UTR | 8174643 | 8174730 | 8174643 | ID=Msa0796110-mRNA-1:five_prime_utr;Parent=Msa0796110-mRNA-1 |
| chr5_3 | CDS | 8174535 | 8174642 | 8174535 | ID=Msa0796110-mRNA-1:cds;Parent=Msa0796110-mRNA-1 |
| chr5_3 | CDS | 8174042 | 8174201 | 8174042 | ID=Msa0796110-mRNA-1:cds;Parent=Msa0796110-mRNA-1 |
| chr5_3 | CDS | 8173606 | 8173649 | 8173606 | ID=Msa0796110-mRNA-1:cds;Parent=Msa0796110-mRNA-1 |
| chr5_3 | CDS | 8171020 | 8171172 | 8171020 | ID=Msa0796110-mRNA-1:cds;Parent=Msa0796110-mRNA-1 |
| chr5_3 | three_prime_UTR | 8170766 | 8171019 | 8170766 | ID=Msa0796110-mRNA-1:three_prime_utr;Parent=Msa0796110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
