AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423560 MtrunA17_Chr3g0130201 89.091 165 12 1 1 165 9 167 3.13e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423560 AT1G74880.1 58.788 165 61 1 1 165 1 158 1.66e-62 190

Find 59 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACTACCGTCAATTATT+TGG 0.065833 tig0025562:+16002 Msa1423560:intron
GGTTTCTTAGGAAGAGTCTT+AGG 0.205905 tig0025562:-14995 None:intergenic
GTAGTCTAATCCTTTGTAAT+AGG 0.224129 tig0025562:-15299 None:intergenic
CTGGAATAAACAGGTTTCTT+AGG 0.242562 tig0025562:-15007 None:intergenic
TCATGGCCGAAAACATTATC+TGG 0.263318 tig0025562:-16043 None:intergenic
ATTGTGTCTCTCTTAATTAA+TGG 0.294241 tig0025562:+14766 Msa1423560:exon
ATGACTACCGTCAATTATTT+GGG 0.383785 tig0025562:+16003 Msa1423560:intron
CTTATCTCTAGTTGTATGTA+TGG 0.394151 tig0025562:+14742 Msa1423560:five_prime_UTR
CTTGACTCACTGGAATAAAC+AGG 0.396415 tig0025562:-15016 None:intergenic
GATATGCGTATATTTGAAAC+AGG 0.408664 tig0025562:+15439 Msa1423560:CDS
TCTTGAACTGCACGAATCAA+TGG 0.413571 tig0025562:-14881 None:intergenic
GTTTCTTAGGAAGAGTCTTA+GGG 0.440236 tig0025562:-14994 None:intergenic
TGCTTAATTCTCAGGTTGCA+TGG 0.442545 tig0025562:+15652 Msa1423560:intron
GCAGTTCAAGACGGTGAACC+AGG 0.447486 tig0025562:+14893 Msa1423560:CDS
TAGTCTAATCCTTTGTAATA+GGG 0.459657 tig0025562:-15298 None:intergenic
GCATCAGAGCTCTTAGTTTG+TGG 0.477417 tig0025562:-14929 None:intergenic
TCTTACAATACTAGACAAAC+AGG 0.486958 tig0025562:-15905 None:intergenic
TCACACAGCTCAACTAAAGA+TGG 0.495213 tig0025562:-15971 None:intergenic
TTTGAGAAATGGGAAAGAGA+AGG 0.496635 tig0025562:-14824 None:intergenic
CTTGAACTGCACGAATCAAT+GGG 0.503362 tig0025562:-14880 None:intergenic
GGAAGCCAAGCTGGAGCAGT+GGG 0.508111 tig0025562:-15684 None:intergenic
AGGAAGAGTCTTAGGGGCAG+TGG 0.518025 tig0025562:-14987 None:intergenic
ATGGGAAAGAGAAGGAAAGG+AGG 0.524817 tig0025562:-14816 None:intergenic
GAAATGGGAAAGAGAAGGAA+AGG 0.530112 tig0025562:-14819 None:intergenic
CACACAGCTCAACTAAAGAT+GGG 0.537591 tig0025562:-15970 None:intergenic
GCTTAATTCTCAGGTTGCAT+GGG 0.543172 tig0025562:+15653 Msa1423560:intron
TCCTACATACATGCTTATCA+AGG 0.544432 tig0025562:+15704 Msa1423560:CDS
AGGAAGCCAAGCTGGAGCAG+TGG 0.544685 tig0025562:-15685 None:intergenic
GAGTCCCCACTGCTCCAGCT+TGG 0.545534 tig0025562:+15679 Msa1423560:CDS
AACAAATACAATGATGGTCA+TGG 0.546848 tig0025562:-16060 None:intergenic
AATTTGTGGACAGTGAAGAA+AGG 0.549691 tig0025562:+15116 Msa1423560:intron
AATTCTCAGGTTGCATGGGT+AGG 0.550094 tig0025562:+15657 Msa1423560:intron
TCTAATCCTTTGTAATAGGG+TGG 0.556199 tig0025562:-15295 None:intergenic
TGAAGAAAGGTCAGATTGTG+AGG 0.558487 tig0025562:+15129 Msa1423560:CDS
TAATTGTCCCAAATAATTGA+CGG 0.560812 tig0025562:-16010 None:intergenic
ATGTATGTAGGAAGCCAAGC+TGG 0.563654 tig0025562:-15693 None:intergenic
GCTCAACTAAAGATGGGGTA+TGG 0.566248 tig0025562:-15964 None:intergenic
GGGCACCCACCCTATTACAA+AGG 0.572065 tig0025562:+15289 Msa1423560:CDS
TCAGATTGTGAGGGTGGACA+AGG 0.576125 tig0025562:+15139 Msa1423560:CDS
GAAAGGTCAGATTGTGAGGG+TGG 0.585375 tig0025562:+15133 Msa1423560:CDS
CATGGCCGAAAACATTATCT+GGG 0.595369 tig0025562:-16042 None:intergenic
CTAATCCTTTGTAATAGGGT+GGG 0.595783 tig0025562:-15294 None:intergenic
CAGTTCAAGACGGTGAACCA+GGG 0.597426 tig0025562:+14894 Msa1423560:CDS
AGCACTACTAGAGGAGGCTG+AGG 0.602396 tig0025562:-14954 None:intergenic
ATGGGGTATGGTGTCTCTGA+TGG 0.613977 tig0025562:-15952 None:intergenic
TTGATTCGTGCAGTTCAAGA+CGG 0.616062 tig0025562:+14884 Msa1423560:CDS
TTTGTTTGTTTACCTCACCA+CGG 0.617430 tig0025562:-15333 None:intergenic
AGTTCAAGACGGTGAACCAG+GGG 0.628235 tig0025562:+14895 Msa1423560:CDS
ACCTTGATAAGCATGTATGT+AGG 0.632174 tig0025562:-15705 None:intergenic
GAATCAATGGGAAAGAAGAA+CGG 0.633893 tig0025562:-14868 None:intergenic
TTTCTTAGGAAGAGTCTTAG+GGG 0.641863 tig0025562:-14993 None:intergenic
GAAGAAAGGTCAGATTGTGA+GGG 0.659835 tig0025562:+15130 Msa1423560:CDS
ACACAGCTCAACTAAAGATG+GGG 0.678819 tig0025562:-15969 None:intergenic
AGACTGAGCACTACTAGAGG+AGG 0.683341 tig0025562:-14960 None:intergenic
GACTACATTTACGAAGACCG+TGG 0.695548 tig0025562:+15316 Msa1423560:CDS
TGAAGACTGAGCACTACTAG+AGG 0.698555 tig0025562:-14963 None:intergenic
CATTTACGAAGACCGTGGTG+AGG 0.713150 tig0025562:+15321 Msa1423560:CDS
GTTCAAGACGGTGAACCAGG+GGG 0.724086 tig0025562:+14896 Msa1423560:CDS
GAAGCCAAGCTGGAGCAGTG+GGG 0.758823 tig0025562:-15683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATTTTTGTTAATTTG+TGG + tig0025562:15102-15121 Msa1423560:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG - tig0025562:15361-15380 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG - tig0025562:15539-15558 None:intergenic 15.0%
!! AAAAAAAACAAATACAATGA+TGG - tig0025562:16069-16088 None:intergenic 15.0%
!!! TATTCATTTTTGTTAATTTG+TGG + tig0025562:15102-15121 Msa1423560:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG - tig0025562:15361-15380 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG - tig0025562:15539-15558 None:intergenic 15.0%
!! AAAAAAAACAAATACAATGA+TGG - tig0025562:16069-16088 None:intergenic 15.0%
! ATTGTGTCTCTCTTAATTAA+TGG + tig0025562:14766-14785 Msa1423560:exon 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG - tig0025562:14837-14856 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG - tig0025562:14838-14857 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG + tig0025562:14837-14856 Msa1423560:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG - tig0025562:15262-15281 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG + tig0025562:15268-15287 Msa1423560:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG + tig0025562:15269-15288 Msa1423560:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG - tig0025562:15301-15320 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG + tig0025562:15411-15430 Msa1423560:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG + tig0025562:15571-15590 Msa1423560:intron 25.0%
! TAATTGTCCCAAATAATTGA+CGG - tig0025562:16013-16032 None:intergenic 25.0%
! ATTGTGTCTCTCTTAATTAA+TGG + tig0025562:14766-14785 Msa1423560:exon 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG - tig0025562:14837-14856 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG - tig0025562:14838-14857 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG + tig0025562:14837-14856 Msa1423560:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG - tig0025562:15262-15281 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG + tig0025562:15268-15287 Msa1423560:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG + tig0025562:15269-15288 Msa1423560:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG - tig0025562:15301-15320 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG + tig0025562:15411-15430 Msa1423560:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG + tig0025562:15571-15590 Msa1423560:intron 25.0%
! TAATTGTCCCAAATAATTGA+CGG - tig0025562:16013-16032 None:intergenic 25.0%
! AAGAAGATGACTCTTTTGTT+GGG - tig0025562:14725-14744 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG - tig0025562:14726-14745 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG + tig0025562:14742-14761 Msa1423560:five_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG - tig0025562:15302-15321 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG + tig0025562:15439-15458 Msa1423560:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG - tig0025562:15587-15606 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG + tig0025562:15727-15746 Msa1423560:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG - tig0025562:15848-15867 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG - tig0025562:15908-15927 None:intergenic 30.0%
AATGACTACCGTCAATTATT+TGG + tig0025562:16002-16021 Msa1423560:intron 30.0%
ATGACTACCGTCAATTATTT+GGG + tig0025562:16003-16022 Msa1423560:intron 30.0%
AACAAATACAATGATGGTCA+TGG - tig0025562:16063-16082 None:intergenic 30.0%
! AAGAAGATGACTCTTTTGTT+GGG - tig0025562:14725-14744 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG - tig0025562:14726-14745 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG + tig0025562:14742-14761 Msa1423560:five_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG - tig0025562:15302-15321 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG + tig0025562:15439-15458 Msa1423560:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG - tig0025562:15587-15606 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG + tig0025562:15727-15746 Msa1423560:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG - tig0025562:15848-15867 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG - tig0025562:15908-15927 None:intergenic 30.0%
AATGACTACCGTCAATTATT+TGG + tig0025562:16002-16021 Msa1423560:intron 30.0%
ATGACTACCGTCAATTATTT+GGG + tig0025562:16003-16022 Msa1423560:intron 30.0%
AACAAATACAATGATGGTCA+TGG - tig0025562:16063-16082 None:intergenic 30.0%
TTTGAGAAATGGGAAAGAGA+AGG - tig0025562:14827-14846 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG - tig0025562:14871-14890 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG - tig0025562:14996-15015 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG - tig0025562:14997-15016 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG - tig0025562:15010-15029 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG + tig0025562:15116-15135 Msa1423560:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG - tig0025562:15297-15316 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG - tig0025562:15298-15317 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG - tig0025562:15336-15355 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG + tig0025562:15417-15436 Msa1423560:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG + tig0025562:15644-15663 Msa1423560:intron 35.0%
TCCTACATACATGCTTATCA+AGG + tig0025562:15704-15723 Msa1423560:CDS 35.0%
ACCTTGATAAGCATGTATGT+AGG - tig0025562:15708-15727 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG - tig0025562:15746-15765 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG + tig0025562:16037-16056 Msa1423560:three_prime_UTR 35.0%
TTTGAGAAATGGGAAAGAGA+AGG - tig0025562:14827-14846 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG - tig0025562:14871-14890 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG - tig0025562:14996-15015 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG - tig0025562:14997-15016 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG - tig0025562:15010-15029 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG + tig0025562:15116-15135 Msa1423560:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG - tig0025562:15297-15316 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG - tig0025562:15298-15317 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG - tig0025562:15336-15355 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG + tig0025562:15417-15436 Msa1423560:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG + tig0025562:15644-15663 Msa1423560:intron 35.0%
TCCTACATACATGCTTATCA+AGG + tig0025562:15704-15723 Msa1423560:CDS 35.0%
ACCTTGATAAGCATGTATGT+AGG - tig0025562:15708-15727 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG - tig0025562:15746-15765 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG + tig0025562:16037-16056 Msa1423560:three_prime_UTR 35.0%
GAAATGGGAAAGAGAAGGAA+AGG - tig0025562:14822-14841 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG - tig0025562:14883-14902 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG - tig0025562:14884-14903 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG + tig0025562:14884-14903 Msa1423560:CDS 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG - tig0025562:14998-15017 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG - tig0025562:15019-15038 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG - tig0025562:15029-15048 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG + tig0025562:15129-15148 Msa1423560:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG + tig0025562:15130-15149 Msa1423560:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG + tig0025562:15218-15237 Msa1423560:intron 40.0%
GGACTCAAATAACATGTCCA+AGG + tig0025562:15242-15261 Msa1423560:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG - tig0025562:15651-15670 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG + tig0025562:15652-15671 Msa1423560:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG + tig0025562:15653-15672 Msa1423560:intron 40.0%
ACACAGCTCAACTAAAGATG+GGG - tig0025562:15972-15991 None:intergenic 40.0%
CACACAGCTCAACTAAAGAT+GGG - tig0025562:15973-15992 None:intergenic 40.0%
TCACACAGCTCAACTAAAGA+TGG - tig0025562:15974-15993 None:intergenic 40.0%
CATGGCCGAAAACATTATCT+GGG - tig0025562:16045-16064 None:intergenic 40.0%
TCATGGCCGAAAACATTATC+TGG - tig0025562:16046-16065 None:intergenic 40.0%
GAAATGGGAAAGAGAAGGAA+AGG - tig0025562:14822-14841 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG - tig0025562:14883-14902 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG - tig0025562:14884-14903 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG + tig0025562:14884-14903 Msa1423560:CDS 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG - tig0025562:14998-15017 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG - tig0025562:15019-15038 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG - tig0025562:15029-15048 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG + tig0025562:15129-15148 Msa1423560:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG + tig0025562:15130-15149 Msa1423560:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG + tig0025562:15218-15237 Msa1423560:intron 40.0%
GGACTCAAATAACATGTCCA+AGG + tig0025562:15242-15261 Msa1423560:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG - tig0025562:15651-15670 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG + tig0025562:15652-15671 Msa1423560:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG + tig0025562:15653-15672 Msa1423560:intron 40.0%
ACACAGCTCAACTAAAGATG+GGG - tig0025562:15972-15991 None:intergenic 40.0%
CACACAGCTCAACTAAAGAT+GGG - tig0025562:15973-15992 None:intergenic 40.0%
TCACACAGCTCAACTAAAGA+TGG - tig0025562:15974-15993 None:intergenic 40.0%
CATGGCCGAAAACATTATCT+GGG - tig0025562:16045-16064 None:intergenic 40.0%
TCATGGCCGAAAACATTATC+TGG - tig0025562:16046-16065 None:intergenic 40.0%
ATGGGAAAGAGAAGGAAAGG+AGG - tig0025562:14819-14838 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG - tig0025562:14932-14951 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG - tig0025562:14966-14985 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG + tig0025562:15221-15240 Msa1423560:intron 45.0%
GACTACATTTACGAAGACCG+TGG + tig0025562:15316-15335 Msa1423560:CDS 45.0%
! AATTCTCAGGTTGCATGGGT+AGG + tig0025562:15657-15676 Msa1423560:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG - tig0025562:15696-15715 None:intergenic 45.0%
GCTCAACTAAAGATGGGGTA+TGG - tig0025562:15967-15986 None:intergenic 45.0%
ATGGGAAAGAGAAGGAAAGG+AGG - tig0025562:14819-14838 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG - tig0025562:14932-14951 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG - tig0025562:14966-14985 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG + tig0025562:15221-15240 Msa1423560:intron 45.0%
GACTACATTTACGAAGACCG+TGG + tig0025562:15316-15335 Msa1423560:CDS 45.0%
! AATTCTCAGGTTGCATGGGT+AGG + tig0025562:15657-15676 Msa1423560:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG - tig0025562:15696-15715 None:intergenic 45.0%
GCTCAACTAAAGATGGGGTA+TGG - tig0025562:15967-15986 None:intergenic 45.0%
!! AATTCAAATAAATATTTATT+TGG - tig0025562:15045-15064 None:intergenic 5.0%
!! AATTCAAATAAATATTTATT+TGG - tig0025562:15045-15064 None:intergenic 5.0%
CAGTTCAAGACGGTGAACCA+GGG + tig0025562:14894-14913 Msa1423560:CDS 50.0%
AGTTCAAGACGGTGAACCAG+GGG + tig0025562:14895-14914 Msa1423560:CDS 50.0%
AGACTGAGCACTACTAGAGG+AGG - tig0025562:14963-14982 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG + tig0025562:15133-15152 Msa1423560:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG + tig0025562:15139-15158 Msa1423560:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG + tig0025562:15321-15340 Msa1423560:CDS 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG + tig0025562:15486-15505 Msa1423560:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG + tig0025562:15499-15518 Msa1423560:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG - tig0025562:15955-15974 None:intergenic 50.0%
CAGTTCAAGACGGTGAACCA+GGG + tig0025562:14894-14913 Msa1423560:CDS 50.0%
AGTTCAAGACGGTGAACCAG+GGG + tig0025562:14895-14914 Msa1423560:CDS 50.0%
AGACTGAGCACTACTAGAGG+AGG - tig0025562:14963-14982 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG + tig0025562:15133-15152 Msa1423560:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG + tig0025562:15139-15158 Msa1423560:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG + tig0025562:15321-15340 Msa1423560:CDS 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG + tig0025562:15486-15505 Msa1423560:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG + tig0025562:15499-15518 Msa1423560:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG - tig0025562:15955-15974 None:intergenic 50.0%
GCAGTTCAAGACGGTGAACC+AGG + tig0025562:14893-14912 Msa1423560:CDS 55.0%
GTTCAAGACGGTGAACCAGG+GGG + tig0025562:14896-14915 Msa1423560:CDS 55.0%
AGCACTACTAGAGGAGGCTG+AGG - tig0025562:14957-14976 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG - tig0025562:14990-15009 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG + tig0025562:15289-15308 Msa1423560:CDS 55.0%
GCAGTTCAAGACGGTGAACC+AGG + tig0025562:14893-14912 Msa1423560:CDS 55.0%
GTTCAAGACGGTGAACCAGG+GGG + tig0025562:14896-14915 Msa1423560:CDS 55.0%
AGCACTACTAGAGGAGGCTG+AGG - tig0025562:14957-14976 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG - tig0025562:14990-15009 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG + tig0025562:15289-15308 Msa1423560:CDS 55.0%
GGCATGCTGTCAGCTGCCTT+TGG - tig0025562:15518-15537 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG - tig0025562:15686-15705 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG - tig0025562:15687-15706 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG - tig0025562:15688-15707 None:intergenic 60.0%
GGCATGCTGTCAGCTGCCTT+TGG - tig0025562:15518-15537 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG - tig0025562:15686-15705 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG - tig0025562:15687-15706 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG - tig0025562:15688-15707 None:intergenic 60.0%
TGTGGCTGTGTACTGCCCCC+TGG - tig0025562:14914-14933 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG + tig0025562:15679-15698 Msa1423560:CDS 65.0%
TGTGGCTGTGTACTGCCCCC+TGG - tig0025562:14914-14933 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG + tig0025562:15679-15698 Msa1423560:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0025562 gene 14704 16098 14704 ID=Msa1423560;Name=Msa1423560
tig0025562 mRNA 14704 16098 14704 ID=Msa1423560-mRNA-1;Parent=Msa1423560;Name=Msa1423560-mRNA-1;_AED=0.23;_eAED=0.23;_QI=81|1|1|1|0.83|0.71|7|168|165
tig0025562 exon 14704 15028 14704 ID=Msa1423560-mRNA-1:exon:3288;Parent=Msa1423560-mRNA-1
tig0025562 exon 15129 15184 15129 ID=Msa1423560-mRNA-1:exon:3289;Parent=Msa1423560-mRNA-1
tig0025562 exon 15277 15342 15277 ID=Msa1423560-mRNA-1:exon:3290;Parent=Msa1423560-mRNA-1
tig0025562 exon 15433 15474 15433 ID=Msa1423560-mRNA-1:exon:3291;Parent=Msa1423560-mRNA-1
tig0025562 exon 15666 15725 15666 ID=Msa1423560-mRNA-1:exon:3292;Parent=Msa1423560-mRNA-1
tig0025562 exon 15871 15980 15871 ID=Msa1423560-mRNA-1:exon:3293;Parent=Msa1423560-mRNA-1
tig0025562 exon 16011 16098 16011 ID=Msa1423560-mRNA-1:exon:3294;Parent=Msa1423560-mRNA-1
tig0025562 five_prime_UTR 14704 14784 14704 ID=Msa1423560-mRNA-1:five_prime_utr;Parent=Msa1423560-mRNA-1
tig0025562 CDS 14785 15028 14785 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 CDS 15129 15184 15129 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 CDS 15277 15342 15277 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 CDS 15433 15474 15433 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 CDS 15666 15725 15666 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 CDS 15871 15900 15871 ID=Msa1423560-mRNA-1:cds;Parent=Msa1423560-mRNA-1
tig0025562 three_prime_UTR 15901 15980 15901 ID=Msa1423560-mRNA-1:three_prime_utr;Parent=Msa1423560-mRNA-1
tig0025562 three_prime_UTR 16011 16098 16011 ID=Msa1423560-mRNA-1:three_prime_utr;Parent=Msa1423560-mRNA-1
Gene Sequence

>Msa1423560

ATGGCTTTCTGTGTAACTCTCTGCTACTACACCTCCTTTCCTTCTCTTTCCCATTTCTCAAAAACTTTGACAAGGAAACATGTCCGTTCTTCTTTCCCATTGATTCGTGCAGTTCAAGACGGTGAACCAGGGGGCAGTACACAGCCACAAACTAAGAGCTCTGATGCTTCCTCAGCCTCCTCTAGTAGTGCTCAGTCTTCAACCACTGCCCCTAAGACTCTTCCTAAGAAACCTGTTTATTCCATGAAGAAAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCATCAATTATCTTTCTGTTGGGCACCCACCCTATTACAAAGGATTAGACTACATTTACGAAGACCGTGGTGAGGTCTTGGATATGCGTATATTTGAAACAGGAGAGCATGCACTTGTTGCATGGGTAGGAGTCCCCACTGCTCCAGCTTGGCTTCCTACATACATGCTTATCAAGTCAGAGAAGCTCAATTATGAGAGACTATAA

Protein sequence

>Msa1423560

MAFCVTLCYYTSFPSLSHFSKTLTRKHVRSSFPLIRAVQDGEPGGSTQPQTKSSDASSASSSSAQSSTTAPKTLPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDMRIFETGEHALVAWVGVPTAPAWLPTYMLIKSEKLNYERL*