AlfalfaGEDB | Msa0888520

M. sativa cultivar zhongmu-4 / Msa0888520

KEGG: K08916
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0888520	XP_013452411.1	99.308	289	2	0	1	289	1	289	0.0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0888520	sp\|Q9XF89\|CB5_ARATH	81.786	280	49	2	11	289	2	280	1.11e-150	426

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0888520	A0A072U9H4	99.308	289	2	0	1	289	1	289	0.0	582

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0888520	0.860306	2.264366e-63	-8.615850e-47
Msa0000800	Msa0888520	-0.843775	1.138865e-58	-8.615850e-47
Msa0001510	Msa0888520	0.883204	5.466907e-71	-8.615850e-47
Msa0001550	Msa0888520	0.872409	3.250730e-67	-8.615850e-47
Msa0002110	Msa0888520	0.902784	6.803383e-79	-8.615850e-47
Msa0002690	Msa0888520	0.936954	7.582395e-98	-8.615850e-47
Msa0002700	Msa0888520	0.936540	1.475591e-97	-8.615850e-47
Msa0003340	Msa0888520	0.879792	9.326764e-70	-8.615850e-47
Msa0004180	Msa0888520	0.946624	3.233925e-105	-8.615850e-47
Msa0005500	Msa0888520	0.867635	1.183575e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0888520	MtrunA17_Chr6g0476641	99.308	289	2	0	1	289	1	289	0.0	582
Msa0888520	MtrunA17_Chr4g0051941	48.352	273	114	9	9	274	2	254	9.35e-72	222
Msa0888520	MtrunA17_Chr6g0453151	55.024	209	85	5	71	274	116	320	1.54e-69	218
Msa0888520	MtrunA17_Chr6g0453141	55.024	209	85	5	71	274	49	253	5.17e-69	214
Msa0888520	MtrunA17_Chr6g0453181	47.826	276	116	8	4	274	1	253	7.73e-69	214
Msa0888520	MtrunA17_Chr5g0447531	55.502	209	84	5	71	274	49	253	6.95e-67	209
Msa0888520	MtrunA17_Chr6g0453161	46.520	273	120	8	7	274	269	520	4.69e-66	215
Msa0888520	MtrunA17_Chr6g0453161	54.545	209	86	5	71	274	51	255	2.11e-65	213
Msa0888520	MtrunA17_Chr2g0318521	49.590	244	107	7	42	274	14	252	8.06e-63	199
Msa0888520	MtrunA17_Chr1g0157481	43.590	234	116	4	57	276	93	324	2.26e-52	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0888520	AT4G10340.1	81.786	280	49	2	11	289	2	280	1.13e-151	426
Msa0888520	AT1G29930.1	48.375	277	115	9	4	274	1	255	2.96e-69	216
Msa0888520	AT1G29920.1	52.232	224	97	6	57	274	36	255	8.75e-69	214
Msa0888520	AT1G29910.1	52.232	224	97	6	57	274	36	255	8.75e-69	214
Msa0888520	AT2G34420.1	51.339	224	99	5	57	274	34	253	1.22e-67	211
Msa0888520	AT2G34430.1	51.121	223	99	5	58	274	36	254	3.57e-67	210
Msa0888520	AT2G05100.1	55.714	210	82	6	71	274	49	253	1.16e-64	204
Msa0888520	AT2G05070.1	55.714	210	82	6	71	274	49	253	1.28e-64	204
Msa0888520	AT3G27690.1	55.238	210	83	6	71	274	50	254	5.29e-64	202
Msa0888520	AT3G27690.2	55.238	210	83	6	71	274	82	286	5.89e-64	203

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Find 110 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAACCTGAAATGAA+TGG	0.510971	6_1:-53149735	Msa0888520:five_prime_UTR
AAAGCAGAAAGTGGCTACTC+CGG	0.571671	6_1:-53149252	Msa0888520:CDS
AAAGTGAAGGAAATTAAGAA+TGG	0.552214	6_1:-53146287	Msa0888520:CDS
AACAAATATGGAGCCAACTG+TGG	0.610263	6_1:-53147589	Msa0888520:CDS
AACAATAAGATTGATGGGGA+TGG	0.497972	6_1:+53147072	None:intergenic
AACAGCAACAATAAGATTGA+TGG	0.422149	6_1:+53147066	None:intergenic
AACCAATCAAATCCATACAT+TGG	0.532544	6_1:-53149619	Msa0888520:five_prime_UTR
AACTGCTTCAGGACCACAGT+TGG	0.560727	6_1:+53147576	None:intergenic
AACTTGCTCACTGTCATTTC+TGG	0.224295	6_1:-53146158	Msa0888520:CDS
AAGATGTGTAATCCAATGTA+TGG	0.437475	6_1:+53149607	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGAACCTGAAATGAA+TGG	-	chr6_1:53145918-53145937	Msa0888520:three_prime_UTR	30.0%
AACCAATCAAATCCATACAT+TGG	-	chr6_1:53146034-53146053	Msa0888520:intron	30.0%
ATCCAATGTATGGATTTGAT+TGG	+	chr6_1:53146039-53146058	None:intergenic	30.0%
AAGATGTGTAATCCAATGTA+TGG	+	chr6_1:53146049-53146068	None:intergenic	30.0%
GTAGTTTACTATATGATGCA+TGG	+	chr6_1:53146133-53146152	None:intergenic	30.0%
TTCACAATATGAAGATAGAG+AGG	+	chr6_1:53146155-53146174	None:intergenic	30.0%
ACATGAGAACAAAACATTGT+TGG	+	chr6_1:53146462-53146481	None:intergenic	30.0%
ATGCTTAGTATTGCATAGAA+TGG	-	chr6_1:53146671-53146690	Msa0888520:intron	30.0%
AGAGTATGTGATTTCTACTT+TGG	-	chr6_1:53147164-53147183	Msa0888520:intron	30.0%
ATTGAGAACATGAGTTAAAG+GGG	+	chr6_1:53147192-53147211	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	53145882	53149793	53145882	ID=Msa0888520;Name=Msa0888520
chr6_1	mRNA	53145882	53149793	53145882	ID=Msa0888520-mRNA-1;Parent=Msa0888520;Name=Msa0888520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=352\|1\|1\|1\|0.83\|0.71\|7\|226\|289
chr6_1	exon	53145882	53146049	53145882	ID=Msa0888520-mRNA-1:exon:10742;Parent=Msa0888520-mRNA-1
chr6_1	exon	53146072	53146390	53146072	ID=Msa0888520-mRNA-1:exon:10741;Parent=Msa0888520-mRNA-1
chr6_1	exon	53147009	53147143	53147009	ID=Msa0888520-mRNA-1:exon:10740;Parent=Msa0888520-mRNA-1
chr6_1	exon	53147567	53147687	53147567	ID=Msa0888520-mRNA-1:exon:10739;Parent=Msa0888520-mRNA-1
chr6_1	exon	53148342	53148392	53148342	ID=Msa0888520-mRNA-1:exon:10738;Parent=Msa0888520-mRNA-1
chr6_1	exon	53148509	53148593	53148509	ID=Msa0888520-mRNA-1:exon:10737;Parent=Msa0888520-mRNA-1
chr6_1	exon	53149225	53149793	53149225	ID=Msa0888520-mRNA-1:exon:10736;Parent=Msa0888520-mRNA-1
chr6_1	five_prime_UTR	53149442	53149793	53149442	ID=Msa0888520-mRNA-1:five_prime_utr;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53149225	53149441	53149225	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53148509	53148593	53148509	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53148342	53148392	53148342	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53147567	53147687	53147567	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53147009	53147143	53147009	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	CDS	53146130	53146390	53146130	ID=Msa0888520-mRNA-1:cds;Parent=Msa0888520-mRNA-1
chr6_1	three_prime_UTR	53146072	53146129	53146072	ID=Msa0888520-mRNA-1:three_prime_utr;Parent=Msa0888520-mRNA-1
chr6_1	three_prime_UTR	53145882	53146049	53145882	ID=Msa0888520-mRNA-1:three_prime_utr;Parent=Msa0888520-mRNA-1

Gene Sequence

>Msa0888520

ATGGCTTCCATTGCTGCTTCTACTGCAGCTGCTTCACTTGGAATGTCTGAAATGCTTGGAAATCCAGTTAAATTCAGTGGTGCAACTAGGTCTGTTCCTTCTTCTTCAACTCCATCTACCTTCAAAACTGTTGCTCTTTTCCAAAAGAAGAAAGCAGCACCTCCACCAAAGCAGAAAGTGGCTACTCCGGCCAGCGAGGAACTCGCCAAGTGGTATGGTCCGGACAGAAGGATCTTCTTGCCAGACGGTCTCTTGGACAGATCTGAGATCCCCGAGTACTTGACTGGAGAAGTCCCTGGAGACTATGGTTACGATCCTTTTGGTCTAAGCAAGAAGCCCGAAGACTTCGCCAAATATCAAGGATATGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCCAACTGTGGTCCTGAAGCAGTTTGGTTCAAGACAGGAGCTCTTCTTCTCGATGGGGGTACGTTGAACTACTTCGGAAAGCCCATCCCCATCAATCTTATTGTTGCTGTTGTTGCTGAGGTTGTTCTCTTAGGAGGTGCTGAGTACTACAGAATTACCAATGGATTGGAATTGGAAGACAAGTTTCACCCAGGTGGTCCATTTGATCCATTAGGGCTAGCAAATGATCCAGACCAAGCTGCAATTCTTAAAGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTTCATCCAAGCTTATGTCACAGGAGAAGGTCCAGTTGAGAACTTAGCAAAGCATCTCAGTGATCCTTTCGGAAACAACTTGCTCACTGTCATTTCTGGAAATGTTGAGAGGGTTCCAACTCTGTGA

Protein sequence

>Msa0888520

MASIAASTAAASLGMSEMLGNPVKFSGATRSVPSSSTPSTFKTVALFQKKKAAPPPKQKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEVVLLGGAEYYRITNGLELEDKFHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERVPTL*