AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86841


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86841.t1 MTR_1g078110 96.246 293 11 0 1 293 468 760 0.0 584
MS.gene86841.t1 MTR_8g024380 83.448 290 47 1 1 289 472 761 1.07e-177 509
MS.gene86841.t1 MTR_8g024390 76.125 289 68 1 1 288 471 759 7.22e-159 461
MS.gene86841.t1 MTR_8g024420 76.471 289 67 1 1 288 435 723 2.21e-157 456
MS.gene86841.t1 MTR_2g049200 75.170 294 70 3 1 293 471 762 9.27e-156 453
MS.gene86841.t1 MTR_8g024370 74.150 294 74 2 1 293 471 763 1.07e-146 430
MS.gene86841.t1 MTR_7g118080 70.890 292 81 4 1 289 468 758 3.07e-137 406
MS.gene86841.t1 MTR_7g079310 53.103 290 129 5 1 286 477 763 2.59e-94 295
MS.gene86841.t1 MTR_7g079300 52.759 290 130 5 1 286 479 765 1.79e-92 290
MS.gene86841.t1 MTR_1g079120 51.027 292 135 5 1 286 471 760 3.27e-85 271
MS.gene86841.t1 MTR_8g027660 65.990 197 42 2 97 292 80 252 2.19e-84 254
MS.gene86841.t1 MTR_4g073540 48.505 301 138 8 1 290 477 771 4.66e-79 255
MS.gene86841.t1 MTR_8g022870 46.259 294 146 5 3 287 486 776 1.06e-75 246
MS.gene86841.t1 MTR_4g102400 47.766 291 134 8 1 286 475 752 1.27e-74 243
MS.gene86841.t1 MTR_7g081750 44.828 290 148 6 1 286 516 797 8.68e-73 239
MS.gene86841.t1 MTR_1g102350 42.333 300 150 6 1 289 492 779 5.10e-72 236
MS.gene86841.t1 MTR_8g021130 43.729 295 149 6 1 284 484 772 7.91e-72 236
MS.gene86841.t1 MTR_7g081580 45.361 291 145 8 1 286 502 783 1.46e-71 235
MS.gene86841.t1 MTR_7g075900 44.027 293 153 5 1 287 485 772 2.34e-71 234
MS.gene86841.t1 MTR_4g125180 42.140 299 149 9 1 287 466 752 2.37e-70 231
MS.gene86841.t1 MTR_7g081380 45.017 291 147 8 1 286 524 806 1.36e-69 230
MS.gene86841.t1 MTR_7g081420 44.211 285 147 7 6 286 508 784 1.77e-69 229
MS.gene86841.t1 MTR_7g098630 42.953 298 151 6 1 286 470 760 1.17e-68 228
MS.gene86841.t1 MTR_7g481600 43.103 290 153 5 1 286 502 783 6.75e-68 226
MS.gene86841.t1 MTR_5g055920 45.139 288 150 6 1 286 385 666 8.29e-68 223
MS.gene86841.t1 MTR_7g081500 43.448 290 152 6 1 286 501 782 9.38e-68 225
MS.gene86841.t1 MTR_3g102810 44.898 294 148 7 1 284 463 752 1.91e-67 224
MS.gene86841.t1 MTR_2g042130 40.067 297 166 4 1 291 487 777 1.96e-67 224
MS.gene86841.t1 MTR_5g044060 74.265 136 34 1 1 135 1 136 5.00e-66 204
MS.gene86841.t1 MTR_4g103480 44.444 288 152 6 1 286 505 786 7.78e-66 220
MS.gene86841.t1 MTR_5g025010 42.759 290 144 6 1 286 446 717 1.05e-65 218
MS.gene86841.t1 MTR_5g025010 42.759 290 144 6 1 286 478 749 1.90e-65 218
MS.gene86841.t1 MTR_5g016120 45.645 287 148 6 3 285 477 759 2.87e-65 218
MS.gene86841.t1 MTR_5g085690 43.390 295 143 8 1 286 509 788 4.19e-65 218
MS.gene86841.t1 MTR_4g103450 44.097 288 153 6 1 286 462 743 5.61e-65 217
MS.gene86841.t1 MTR_4g134320 44.211 285 149 5 6 290 495 769 5.75e-65 217
MS.gene86841.t1 MTR_4g095360 42.215 289 159 5 3 287 471 755 9.39e-65 216
MS.gene86841.t1 MTR_7g098070 43.929 280 147 4 11 290 496 765 1.28e-64 216
MS.gene86841.t1 MTR_4g103430 44.406 286 149 6 4 286 490 768 5.41e-64 214
MS.gene86841.t1 MTR_8g072440 43.509 285 139 6 5 286 445 710 5.68e-64 214
MS.gene86841.t1 MTR_5g011310 44.291 289 142 6 3 286 479 753 5.80e-64 214
MS.gene86841.t1 MTR_3g082200 41.581 291 149 9 6 289 358 634 7.07e-64 212
MS.gene86841.t1 MTR_5g011340 44.291 289 142 6 3 286 476 750 7.21e-64 214
MS.gene86841.t1 MTR_3g082200 41.581 291 149 9 6 289 373 649 8.65e-64 212
MS.gene86841.t1 MTR_8g072440 43.509 285 139 6 5 286 487 752 8.82e-64 214
MS.gene86841.t1 MTR_3g061110 43.750 288 152 6 1 286 473 752 8.91e-64 214
MS.gene86841.t1 MTR_1g018510 42.905 296 155 7 1 284 430 723 2.69e-63 212
MS.gene86841.t1 MTR_5g011190 44.674 291 138 7 3 286 479 753 4.18e-63 212
MS.gene86841.t1 MTR_3g082200 41.581 291 149 9 6 289 496 772 4.50e-63 212
MS.gene86841.t1 MTR_8g033150 43.617 282 141 7 12 288 458 726 1.34e-62 210
MS.gene86841.t1 MTR_8g033150 43.617 282 141 7 12 288 485 753 2.00e-62 210
MS.gene86841.t1 MTR_8g083220 41.611 298 153 7 1 293 500 781 3.36e-62 210
MS.gene86841.t1 MTR_5g011320 42.907 289 146 6 3 286 471 745 1.27e-61 208
MS.gene86841.t1 MTR_5g011370 43.986 291 140 7 3 286 499 773 1.61e-61 208
MS.gene86841.t1 MTR_0047s0120 41.812 287 157 4 3 284 473 754 2.28e-61 207
MS.gene86841.t1 MTR_8g079900 42.908 282 143 7 12 288 377 645 6.85e-61 204
MS.gene86841.t1 MTR_8g027260 41.096 292 154 5 3 289 376 654 7.04e-61 204
MS.gene86841.t1 MTR_4g103490 43.007 286 153 7 4 286 505 783 1.10e-60 206
MS.gene86841.t1 MTR_8g079900 42.908 282 143 7 12 288 475 743 2.21e-60 204
MS.gene86841.t1 MTR_8g042670 40.989 283 148 7 11 286 363 633 9.71e-60 201
MS.gene86841.t1 MTR_4g053630 42.069 290 153 6 6 291 379 657 1.15e-59 201
MS.gene86841.t1 MTR_8g042710 41.259 286 146 7 11 286 490 763 1.58e-59 202
MS.gene86841.t1 MTR_5g096750 45.965 285 130 10 12 292 503 767 2.78e-59 202
MS.gene86841.t1 MTR_4g053630 42.069 290 153 6 6 291 456 734 3.08e-59 201
MS.gene86841.t1 MTR_8g042670 40.989 283 148 7 11 286 487 757 5.20e-59 201
MS.gene86841.t1 MTR_5g011280 41.522 289 150 6 3 286 481 755 8.92e-59 200
MS.gene86841.t1 MTR_4g103495 42.907 289 155 6 1 286 342 623 1.70e-58 197
MS.gene86841.t1 MTR_4g103400 41.781 292 159 8 1 288 494 778 2.36e-58 199
MS.gene86841.t1 MTR_5g011270 42.215 289 148 6 3 286 477 751 4.85e-58 198
MS.gene86841.t1 MTR_5g011260 42.123 292 144 8 3 286 477 751 1.53e-57 197
MS.gene86841.t1 MTR_8g005710 40.767 287 154 5 7 289 427 701 2.92e-57 195
MS.gene86841.t1 MTR_6g055570 41.237 291 148 9 7 289 457 732 3.73e-57 196
MS.gene86841.t1 MTR_3g114420 40.956 293 155 9 6 289 484 767 9.16e-57 195
MS.gene86841.t1 MTR_2g018135 42.414 290 149 7 5 287 505 783 1.19e-55 192
MS.gene86841.t1 MTR_4g053635 41.379 290 152 7 6 291 402 677 3.73e-55 189
MS.gene86841.t1 MTR_7g075890 41.219 279 147 6 13 286 631 897 4.08e-55 191
MS.gene86841.t1 MTR_1g006990 40.550 291 152 7 7 291 464 739 2.06e-54 188
MS.gene86841.t1 MTR_7g034380 40.351 285 152 7 7 286 420 691 3.59e-54 187
MS.gene86841.t1 MTR_2g018125 41.724 290 151 7 5 287 506 784 9.71e-54 187
MS.gene86841.t1 MTR_1g007030 39.519 291 155 7 7 291 462 737 5.48e-53 184
MS.gene86841.t1 MTR_7g104200 39.286 280 153 5 12 286 474 741 5.55e-53 184
MS.gene86841.t1 MTR_3g010080 40.550 291 153 8 7 291 460 736 3.45e-52 182
MS.gene86841.t1 MTR_3g104930 40.678 295 150 10 6 287 480 762 7.13e-52 181
MS.gene86841.t1 MTR_6g075370 38.290 269 147 5 13 277 424 677 1.03e-51 180
MS.gene86841.t1 MTR_8g006680 41.946 298 140 12 3 291 454 727 1.22e-51 180
MS.gene86841.t1 MTR_8g005300 41.946 298 140 12 3 291 454 727 1.22e-51 180
MS.gene86841.t1 MTR_8g005640 41.946 298 140 12 3 291 454 727 1.22e-51 180
MS.gene86841.t1 MTR_1g048110 40.000 295 144 10 7 289 460 733 3.45e-51 179
MS.gene86841.t1 MTR_3g464790 40.206 291 145 9 6 287 462 732 3.98e-51 179
MS.gene86841.t1 MTR_6g055410 41.516 277 137 10 22 289 454 714 4.18e-51 179
MS.gene86841.t1 MTR_4g103495 45.622 217 110 4 1 215 491 701 7.11e-47 167
MS.gene86841.t1 MTR_2g042650 37.288 295 156 9 7 291 372 647 7.64e-45 161
MS.gene86841.t1 MTR_2g044630 38.783 263 128 10 36 286 464 705 2.71e-41 151
MS.gene86841.t1 MTR_7g079295 50.296 169 72 4 120 286 351 509 5.32e-41 149
MS.gene86841.t1 MTR_4g127480 36.177 293 152 11 11 285 537 812 8.35e-39 145
MS.gene86841.t1 MTR_2g070260 40.097 207 105 7 73 274 1 193 5.39e-35 126
MS.gene86841.t1 MTR_2g042640 35.743 249 123 6 7 248 393 611 2.60e-34 131
MS.gene86841.t1 MTR_3g452290 35.409 257 126 8 35 289 353 571 3.22e-34 130
MS.gene86841.t1 MTR_3g451220 35.409 257 126 8 35 289 353 571 3.22e-34 130
MS.gene86841.t1 MTR_4g126230 36.667 210 109 6 13 214 55 248 8.73e-34 124
MS.gene86841.t1 MTR_4g132620 32.975 279 166 7 13 281 542 809 4.60e-33 128
MS.gene86841.t1 MTR_3g114140 37.751 249 136 9 6 245 184 422 7.91e-33 125
MS.gene86841.t1 MTR_8g089230 34.021 291 160 12 13 286 570 845 8.59e-32 125
MS.gene86841.t1 MTR_2g037850 38.235 238 124 7 11 234 537 765 1.79e-31 124
MS.gene86841.t1 MTR_4g053665 34.866 261 123 7 32 291 1 215 6.05e-31 115
MS.gene86841.t1 MTR_7g081660 37.778 180 103 3 109 286 380 552 6.45e-30 119
MS.gene86841.t1 MTR_2g046740 34.122 296 154 13 13 286 562 838 3.30e-28 114
MS.gene86841.t1 MTR_4g071560 51.429 105 47 3 5 105 416 520 8.65e-23 98.2
MS.gene86841.t1 MTR_8g042710 51.000 100 38 2 11 104 490 584 4.59e-22 96.3
MS.gene86841.t1 MTR_5g081130 34.637 179 98 6 116 286 5 172 1.26e-21 90.5
MS.gene86841.t1 MTR_3g114410 53.535 99 45 1 6 104 483 580 6.77e-21 92.8
MS.gene86841.t1 MTR_5g011300 51.648 91 43 1 73 163 1 90 3.71e-18 78.2
MS.gene86841.t1 MTR_8g027670 56.250 80 35 0 160 239 33 112 3.51e-15 70.9
MS.gene86841.t1 MTR_3g005755 43.038 79 44 1 55 132 228 306 2.82e-14 72.0
MS.gene86841.t1 MTR_3g114400 32.402 179 90 9 117 287 8 163 2.15e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86841.t1 AT5G67090 48.639 294 127 6 1 289 458 732 7.69e-80 256
MS.gene86841.t1 AT3G14240 46.599 294 145 5 3 287 480 770 5.41e-77 249
MS.gene86841.t1 AT4G34980 46.284 296 151 5 1 289 467 761 6.91e-76 246
MS.gene86841.t1 AT5G67360 44.863 292 149 4 1 287 471 755 7.25e-71 233
MS.gene86841.t1 AT5G51750 41.980 293 162 4 1 289 489 777 3.46e-70 231
MS.gene86841.t1 AT2G05920 38.462 286 167 3 3 284 467 747 1.59e-67 224
MS.gene86841.t1 AT1G04110 41.356 295 157 6 3 287 483 771 2.75e-66 221
MS.gene86841.t1 AT2G04160 44.828 290 139 9 5 286 494 770 1.01e-65 219
MS.gene86841.t1 AT3G14067 39.799 299 162 7 1 286 474 767 1.16e-65 219
MS.gene86841.t1 AT1G20160 45.263 285 140 7 12 288 448 724 6.03e-64 214
MS.gene86841.t1 AT1G01900 46.075 293 146 6 3 287 484 772 6.67e-64 214
MS.gene86841.t1 AT1G20160 45.263 285 140 7 12 288 487 763 1.23e-63 214
MS.gene86841.t1 AT4G26330 42.414 290 152 5 5 286 439 721 4.53e-60 203
MS.gene86841.t1 AT4G26330 42.414 290 152 5 5 286 453 735 5.89e-60 203
MS.gene86841.t1 AT5G59810 43.011 279 148 5 10 286 505 774 1.64e-59 202
MS.gene86841.t1 AT5G45650 43.003 293 143 8 5 287 511 789 1.74e-59 202
MS.gene86841.t1 AT5G45650 43.003 293 143 8 5 287 511 789 1.74e-59 202
MS.gene86841.t1 AT4G00230 41.581 291 153 6 3 288 467 745 3.40e-59 201
MS.gene86841.t1 AT4G10550 42.808 292 147 9 5 292 441 716 3.01e-56 193
MS.gene86841.t1 AT4G10550 42.808 292 147 9 5 292 441 716 3.01e-56 193
MS.gene86841.t1 AT4G10550 42.808 292 147 9 5 292 497 772 5.02e-56 193
MS.gene86841.t1 AT4G10550 42.808 292 147 9 5 292 513 788 6.53e-56 193
MS.gene86841.t1 AT5G11940 42.361 288 143 9 13 293 488 759 3.24e-55 191
MS.gene86841.t1 AT4G10540 41.497 294 149 8 5 292 493 769 3.29e-54 188
MS.gene86841.t1 AT5G03620 38.333 300 150 6 7 286 474 758 1.89e-53 186
MS.gene86841.t1 AT3G46850 42.708 288 143 9 5 286 463 734 6.89e-53 184
MS.gene86841.t1 AT5G59100 40.702 285 148 7 13 289 469 740 7.52e-53 184
MS.gene86841.t1 AT5G58840 42.199 282 144 9 11 286 438 706 1.01e-52 183
MS.gene86841.t1 AT5G58830 42.143 280 143 9 13 286 439 705 1.64e-52 182
MS.gene86841.t1 AT3G46840 41.319 288 147 9 5 286 463 734 2.22e-52 182
MS.gene86841.t1 AT4G10510 40.816 294 153 9 5 293 424 701 6.81e-52 181
MS.gene86841.t1 AT4G10510 40.816 294 153 9 5 293 439 716 7.13e-52 181
MS.gene86841.t1 AT4G10510 40.816 294 153 9 5 293 495 772 1.07e-51 181
MS.gene86841.t1 AT4G10510 40.816 294 153 9 5 293 483 760 1.20e-51 181
MS.gene86841.t1 AT1G32970 43.007 286 144 7 5 286 452 722 1.77e-51 180
MS.gene86841.t1 AT5G59190 41.812 287 144 10 11 290 422 692 2.57e-51 179
MS.gene86841.t1 AT1G20150 42.123 292 142 8 13 288 492 772 8.09e-51 179
MS.gene86841.t1 AT5G58820 42.414 290 149 10 2 286 424 700 1.80e-50 177
MS.gene86841.t1 AT4G10520 39.726 292 157 6 5 292 474 750 4.37e-50 176
MS.gene86841.t1 AT1G32960 40.068 292 156 7 5 292 495 771 6.91e-50 176
MS.gene86841.t1 AT5G59090 40.278 288 152 9 5 286 455 728 1.06e-49 175
MS.gene86841.t1 AT5G59090 40.278 288 152 9 5 286 453 726 1.09e-49 175
MS.gene86841.t1 AT5G59090 39.931 288 148 9 5 286 455 723 2.54e-49 174
MS.gene86841.t1 AT2G39850 39.057 297 145 13 14 290 489 769 1.81e-47 169
MS.gene86841.t1 AT4G21323 39.661 295 153 7 5 293 522 797 3.90e-47 169
MS.gene86841.t1 AT1G32940 40.273 293 154 7 5 292 441 717 7.43e-47 167
MS.gene86841.t1 AT1G32940 40.273 293 154 7 5 292 441 717 7.43e-47 167
MS.gene86841.t1 AT1G32940 40.273 293 154 7 5 292 492 768 1.33e-46 167
MS.gene86841.t1 AT1G32950 39.590 293 156 8 5 292 440 716 1.71e-46 166
MS.gene86841.t1 AT5G59130 40.000 280 150 8 11 286 456 721 1.74e-46 166
MS.gene86841.t1 AT5G59130 40.000 280 150 8 11 286 460 725 1.79e-46 166
MS.gene86841.t1 AT5G59130 40.000 280 150 8 11 286 421 686 1.89e-46 166
MS.gene86841.t1 AT5G59120 38.163 283 154 9 11 286 459 727 2.06e-46 166
MS.gene86841.t1 AT5G59130 40.000 280 150 8 11 286 450 715 2.12e-46 166
MS.gene86841.t1 AT1G32950 39.590 293 156 8 5 292 491 767 2.64e-46 166
MS.gene86841.t1 AT4G21630 40.614 293 150 10 1 286 478 753 3.10e-46 166
MS.gene86841.t1 AT4G21326 40.690 290 153 6 1 286 413 687 8.04e-46 164
MS.gene86841.t1 AT4G21640 39.726 292 154 8 1 286 452 727 1.54e-45 164
MS.gene86841.t1 AT1G66210 37.458 299 160 8 1 293 480 757 5.75e-45 162
MS.gene86841.t1 AT4G21650 39.510 286 153 10 6 286 490 760 2.75e-44 160
MS.gene86841.t1 AT1G66220 36.149 296 162 7 1 293 477 748 2.04e-43 158
MS.gene86841.t1 AT5G45640 35.764 288 157 6 6 287 487 752 7.82e-43 156
MS.gene86841.t1 AT1G32980 47.120 191 90 5 69 255 3 186 3.71e-42 144
MS.gene86841.t1 AT4G10530 35.616 292 156 6 5 292 478 741 2.89e-41 152
MS.gene86841.t1 AT4G15040 37.413 286 147 6 13 286 420 685 6.16e-41 150
MS.gene86841.t1 AT4G15040 37.413 286 147 6 13 286 420 685 6.16e-41 150
MS.gene86841.t1 AT2G19170 36.426 291 155 11 11 285 533 809 1.42e-37 141
MS.gene86841.t1 AT2G19170 36.426 291 155 11 11 285 533 809 1.42e-37 141
MS.gene86841.t1 AT4G30020 35.254 295 163 10 11 290 534 815 8.93e-37 139
MS.gene86841.t1 AT4G30020 35.254 295 163 10 11 290 534 815 8.93e-37 139
MS.gene86841.t1 AT4G30020 35.254 295 163 10 11 290 534 815 8.93e-37 139
MS.gene86841.t1 AT4G30020 35.254 295 163 10 11 290 534 815 8.93e-37 139
MS.gene86841.t1 AT1G62340 35.314 303 156 14 6 289 551 832 1.61e-35 135
MS.gene86841.t1 AT4G20430 34.589 292 159 11 13 287 549 825 1.79e-35 135
MS.gene86841.t1 AT4G20430 34.589 292 159 11 13 287 573 849 2.41e-35 135
MS.gene86841.t1 AT4G20430 34.589 292 159 11 13 287 573 849 2.41e-35 135
MS.gene86841.t1 AT5G44530 35.052 291 157 11 13 286 558 833 2.67e-35 135
MS.gene86841.t1 AT1G30600 34.304 309 165 13 2 286 532 826 5.10e-34 131
MS.gene86841.t1 AT5G44530 32.911 316 155 12 13 286 558 858 6.61e-32 125
MS.gene86841.t1 AT4G00230 47.934 121 59 1 3 123 467 583 3.91e-26 108
MS.gene86841.t1 AT5G58840 53.684 95 42 2 11 104 438 531 6.76e-24 101
MS.gene86841.t1 AT5G03620 52.128 94 45 0 13 106 484 577 2.03e-22 97.4
MS.gene86841.t1 AT5G59110 35.583 163 95 5 130 286 8 166 1.24e-18 81.6
MS.gene86841.t1 AT1G32940 47.414 116 53 2 5 119 492 600 3.06e-16 79.3

Find 60 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGCATTGCACCAATTAA+AGG 0.236062 1.1:-58565917 MS.gene86841:CDS
TCATTAAACACCAACTTGTT+TGG 0.255326 1.1:+58565875 None:intergenic
GTGACACGAAACCCTTTAAT+TGG 0.274687 1.1:+58565905 None:intergenic
AAATTAAAGAAAGTGGCTTT+TGG 0.323736 1.1:-58565800 MS.gene86841:CDS
CATTAAACACCAACTTGTTT+GGG 0.335235 1.1:+58565876 None:intergenic
CCAGGGTCAAGTGCTCTATT+AGG 0.357114 1.1:+58566178 None:intergenic
TGAAAGGAGTGCATAGTGAT+TGG 0.379645 1.1:-58566330 MS.gene86841:CDS
CCTGGTCTTGTTTATGATGT+TGG 0.393335 1.1:-58566160 MS.gene86841:CDS
TGTGATAAGTGGAACATCTA+TGG 0.398520 1.1:-58566386 MS.gene86841:CDS
TTGAGGCTGGTGACCACAAT+AGG 0.402287 1.1:+58565737 None:intergenic
ATGGCGTGTCCTCATGTTGC+AGG 0.412710 1.1:-58566367 MS.gene86841:CDS
AGCGAATTCAATGTGATAAG+TGG 0.413723 1.1:-58566397 MS.gene86841:CDS
CTAGCATTGCACCAATTAAA+GGG 0.414915 1.1:-58565916 MS.gene86841:CDS
TGATTGCTCTAAACCTTCCT+TGG 0.422318 1.1:-58566056 MS.gene86841:CDS
ATGATGGAAATTCTTCTTCA+AGG 0.429465 1.1:-58566000 MS.gene86841:CDS
GAATCTAGAATTTCAATTTG+AGG 0.433320 1.1:+58565720 None:intergenic
GGAAGGTTTAGAGCAATCAT+TGG 0.449304 1.1:+58566060 None:intergenic
ATTGGAGCCCAGCAGCTATT+CGG 0.456616 1.1:-58566312 MS.gene86841:CDS
TCCAACACAGGAACATTTGT+AGG 0.457074 1.1:+58566442 None:intergenic
CATAGAACAGTTACCAATGT+TGG 0.459195 1.1:-58565962 MS.gene86841:CDS
CTAGAATTTCAATTTGAGGC+TGG 0.467619 1.1:+58565724 None:intergenic
TATGACAAAATTAAAGAAAG+TGG 0.475264 1.1:-58565807 MS.gene86841:CDS
TTGACAAAAGCAATAAAAGA+AGG 0.485601 1.1:+58566022 None:intergenic
AGAAGCTAAGCTACAAATTG+AGG 0.490516 1.1:-58565844 MS.gene86841:CDS
GTTCTATGAAATTCTTGTAT+CGG 0.496052 1.1:+58565977 None:intergenic
ATTGCCGACCGAATAGCTGC+TGG 0.510132 1.1:+58566304 None:intergenic
TGCCGCTAAGATCGAAGTAC+CGG 0.513591 1.1:+58566468 None:intergenic
TGACCAGCTCCCAATGCAAA+AGG 0.515149 1.1:+58566208 None:intergenic
TGCTTGTCCGTCACCAACAT+TGG 0.519518 1.1:+58565949 None:intergenic
TTTAGAGCAATCATTGGAAG+AGG 0.527393 1.1:+58566066 None:intergenic
GTACCGGGTGCAGTAATGTC+AGG 0.544360 1.1:+58566484 None:intergenic
TACGAATCAACACTAGGTGC+TGG 0.546608 1.1:+58566550 None:intergenic
CACTGTTATCCCAAACAAGT+TGG 0.557580 1.1:-58565885 MS.gene86841:CDS
CCAACATCATAAACAAGACC+AGG 0.558341 1.1:+58566160 None:intergenic
GCCTACAAATGTTCCTGTGT+TGG 0.558529 1.1:-58566443 MS.gene86841:CDS
ACGAATGGACAACTATATGA+TGG 0.560428 1.1:+58566514 None:intergenic
AGAAGGGTAGTTAAGATCCA+AGG 0.564628 1.1:+58566039 None:intergenic
AAGGAACACATCAAAGACAT+TGG 0.567669 1.1:-58566250 MS.gene86841:CDS
GTTGATTCGTATAGTTCAAG+AGG 0.572994 1.1:-58566538 MS.gene86841:CDS
TCCTCATGTTGCAGGTGTCG+CGG 0.581039 1.1:-58566359 MS.gene86841:CDS
TGAGACTCAAATTCCAACAC+AGG 0.582851 1.1:+58566430 None:intergenic
ATGTCAGGTTTCAACACGAA+TGG 0.584244 1.1:+58566499 None:intergenic
AGACATATTTGATAATGCTA+AGG 0.587983 1.1:-58566269 MS.gene86841:CDS
TGACAAAAGCAATAAAAGAA+GGG 0.590695 1.1:+58566023 None:intergenic
AAACCTGACATTACTGCACC+CGG 0.592592 1.1:-58566487 MS.gene86841:CDS
TTGCCGACCGAATAGCTGCT+GGG 0.596434 1.1:+58566305 None:intergenic
ACCCGGTACTTCGATCTTAG+CGG 0.602662 1.1:-58566470 MS.gene86841:CDS
GTACTTCGATCTTAGCGGCA+TGG 0.611328 1.1:-58566465 MS.gene86841:CDS
GGGTAGTTAAGATCCAAGGA+AGG 0.612984 1.1:+58566043 None:intergenic
TGTTGTTAGAAGTCCTATTG+TGG 0.614388 1.1:-58565750 MS.gene86841:CDS
GCCGCGACACCTGCAACATG+AGG 0.621524 1.1:+58566358 None:intergenic
CCTAATAGAGCACTTGACCC+TGG 0.625486 1.1:-58566178 MS.gene86841:CDS
ATTGGAAGAGGATCTTGTGA+TGG 0.630373 1.1:+58566078 None:intergenic
GAACTATACGAATCAACACT+AGG 0.641343 1.1:+58566544 None:intergenic
GCCGCTAAGATCGAAGTACC+GGG 0.646643 1.1:+58566469 None:intergenic
GAGCCCAGCAGCTATTCGGT+CGG 0.647472 1.1:-58566308 MS.gene86841:CDS
TTGATTCGTATAGTTCAAGA+GGG 0.648596 1.1:-58566537 MS.gene86841:CDS
ACAGTTACCAATGTTGGTGA+CGG 0.649485 1.1:-58565956 MS.gene86841:CDS
AGACATTGGAACAGACAAAG+CGG 0.712327 1.1:-58566236 MS.gene86841:CDS
CAACATCATAAACAAGACCA+GGG 0.726316 1.1:+58566161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGACAAAATTAAAGAAAG+TGG - chr1.1:58566500-58566519 MS.gene86841:CDS 20.0%
! GTTCTATGAAATTCTTGTAT+CGG + chr1.1:58566333-58566352 None:intergenic 25.0%
! TGACAAAAGCAATAAAAGAA+GGG + chr1.1:58566287-58566306 None:intergenic 25.0%
! TTGACAAAAGCAATAAAAGA+AGG + chr1.1:58566288-58566307 None:intergenic 25.0%
!! AAATTAAAGAAAGTGGCTTT+TGG - chr1.1:58566507-58566526 MS.gene86841:CDS 25.0%
!! TCTTTCATGAAAACAGTTTT+TGG - chr1.1:58565727-58565746 MS.gene86841:CDS 25.0%
!!! AGACATATTTGATAATGCTA+AGG - chr1.1:58566038-58566057 MS.gene86841:CDS 25.0%
!!! TTTATTGCTTTTGTCAATGA+TGG - chr1.1:58566291-58566310 MS.gene86841:CDS 25.0%
! ATGATGGAAATTCTTCTTCA+AGG - chr1.1:58566307-58566326 MS.gene86841:CDS 30.0%
! CATTAAACACCAACTTGTTT+GGG + chr1.1:58566434-58566453 None:intergenic 30.0%
! TCATTAAACACCAACTTGTT+TGG + chr1.1:58566435-58566454 None:intergenic 30.0%
! TTGATTCGTATAGTTCAAGA+GGG - chr1.1:58565770-58565789 MS.gene86841:CDS 30.0%
! TTTTGGATATCTAACATGGA+TGG - chr1.1:58566524-58566543 MS.gene86841:CDS 30.0%
AAGGAACACATCAAAGACAT+TGG - chr1.1:58566057-58566076 MS.gene86841:CDS 35.0%
ACGAATGGACAACTATATGA+TGG + chr1.1:58565796-58565815 None:intergenic 35.0%
AGAAGCTAAGCTACAAATTG+AGG - chr1.1:58566463-58566482 MS.gene86841:CDS 35.0%
AGCGAATTCAATGTGATAAG+TGG - chr1.1:58565910-58565929 MS.gene86841:CDS 35.0%
CAACATCATAAACAAGACCA+GGG + chr1.1:58566149-58566168 None:intergenic 35.0%
CATAGAACAGTTACCAATGT+TGG - chr1.1:58566345-58566364 MS.gene86841:CDS 35.0%
CTAGCATTGCACCAATTAAA+GGG - chr1.1:58566391-58566410 MS.gene86841:CDS 35.0%
GAACTATACGAATCAACACT+AGG + chr1.1:58565766-58565785 None:intergenic 35.0%
TGTGATAAGTGGAACATCTA+TGG - chr1.1:58565921-58565940 MS.gene86841:CDS 35.0%
TGTTGTTAGAAGTCCTATTG+TGG - chr1.1:58566557-58566576 MS.gene86841:CDS 35.0%
! CTAGAATTTCAATTTGAGGC+TGG + chr1.1:58566586-58566605 None:intergenic 35.0%
! TGGCTTTTGGATATCTAACA+TGG - chr1.1:58566520-58566539 MS.gene86841:CDS 35.0%
! TTTAGAGCAATCATTGGAAG+AGG + chr1.1:58566244-58566263 None:intergenic 35.0%
!! GTTGATTCGTATAGTTCAAG+AGG - chr1.1:58565769-58565788 MS.gene86841:CDS 35.0%
AGAAGGGTAGTTAAGATCCA+AGG + chr1.1:58566271-58566290 None:intergenic 40.0%
AGACATTGGAACAGACAAAG+CGG - chr1.1:58566071-58566090 MS.gene86841:CDS 40.0%
ATGTCAGGTTTCAACACGAA+TGG + chr1.1:58565811-58565830 None:intergenic 40.0%
ATTGGAAGAGGATCTTGTGA+TGG + chr1.1:58566232-58566251 None:intergenic 40.0%
CACTGTTATCCCAAACAAGT+TGG - chr1.1:58566422-58566441 MS.gene86841:CDS 40.0%
CCAACATCATAAACAAGACC+AGG + chr1.1:58566150-58566169 None:intergenic 40.0%
GCTAGCATTGCACCAATTAA+AGG - chr1.1:58566390-58566409 MS.gene86841:CDS 40.0%
GTGACACGAAACCCTTTAAT+TGG + chr1.1:58566405-58566424 None:intergenic 40.0%
TCCAACACAGGAACATTTGT+AGG + chr1.1:58565868-58565887 None:intergenic 40.0%
TGAGACTCAAATTCCAACAC+AGG + chr1.1:58565880-58565899 None:intergenic 40.0%
! ACAGTTACCAATGTTGGTGA+CGG - chr1.1:58566351-58566370 MS.gene86841:CDS 40.0%
! GGAAGGTTTAGAGCAATCAT+TGG + chr1.1:58566250-58566269 None:intergenic 40.0%
! TGAAAGGAGTGCATAGTGAT+TGG - chr1.1:58565977-58565996 MS.gene86841:CDS 40.0%
! TGATTGCTCTAAACCTTCCT+TGG - chr1.1:58566251-58566270 MS.gene86841:CDS 40.0%
!! CCTGGTCTTGTTTATGATGT+TGG - chr1.1:58566147-58566166 MS.gene86841:CDS 40.0%
AAACCTGACATTACTGCACC+CGG - chr1.1:58565820-58565839 MS.gene86841:CDS 45.0%
GCCTACAAATGTTCCTGTGT+TGG - chr1.1:58565864-58565883 MS.gene86841:CDS 45.0%
GGGTAGTTAAGATCCAAGGA+AGG + chr1.1:58566267-58566286 None:intergenic 45.0%
TACGAATCAACACTAGGTGC+TGG + chr1.1:58565760-58565779 None:intergenic 45.0%
ACCCGGTACTTCGATCTTAG+CGG - chr1.1:58565837-58565856 MS.gene86841:CDS 50.0%
ATTGGAGCCCAGCAGCTATT+CGG - chr1.1:58565995-58566014 MS.gene86841:CDS 50.0%
CCAGGGTCAAGTGCTCTATT+AGG + chr1.1:58566132-58566151 None:intergenic 50.0%
GTACTTCGATCTTAGCGGCA+TGG - chr1.1:58565842-58565861 MS.gene86841:CDS 50.0%
TGACCAGCTCCCAATGCAAA+AGG + chr1.1:58566102-58566121 None:intergenic 50.0%
TGCCGCTAAGATCGAAGTAC+CGG + chr1.1:58565842-58565861 None:intergenic 50.0%
TGCTTGTCCGTCACCAACAT+TGG + chr1.1:58566361-58566380 None:intergenic 50.0%
TTGAGGCTGGTGACCACAAT+AGG + chr1.1:58566573-58566592 None:intergenic 50.0%
! ACACCTTTTGCATTGGGAGC+TGG - chr1.1:58566096-58566115 MS.gene86841:CDS 50.0%
! AGCGGCAACACCTTTTGCAT+TGG - chr1.1:58566089-58566108 MS.gene86841:CDS 50.0%
! CCTAATAGAGCACTTGACCC+TGG - chr1.1:58566129-58566148 MS.gene86841:CDS 50.0%
! GCGGCAACACCTTTTGCATT+GGG - chr1.1:58566090-58566109 MS.gene86841:CDS 50.0%
ATGGCGTGTCCTCATGTTGC+AGG - chr1.1:58565940-58565959 MS.gene86841:CDS 55.0%
ATTGCCGACCGAATAGCTGC+TGG + chr1.1:58566006-58566025 None:intergenic 55.0%
GTACCGGGTGCAGTAATGTC+AGG + chr1.1:58565826-58565845 None:intergenic 55.0%
TTGCCGACCGAATAGCTGCT+GGG + chr1.1:58566005-58566024 None:intergenic 55.0%
! GCCGCTAAGATCGAAGTACC+GGG + chr1.1:58565841-58565860 None:intergenic 55.0%
! TCCTCATGTTGCAGGTGTCG+CGG - chr1.1:58565948-58565967 MS.gene86841:CDS 55.0%
GAGCCCAGCAGCTATTCGGT+CGG - chr1.1:58565999-58566018 MS.gene86841:CDS 60.0%
!! GGTGTCGCGGCGCTTTTGAA+AGG - chr1.1:58565961-58565980 MS.gene86841:CDS 60.0%
GCCGCGACACCTGCAACATG+AGG + chr1.1:58565952-58565971 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 58565724 58566605 58565724 ID=MS.gene86841
chr1.1 mRNA 58565724 58566605 58565724 ID=MS.gene86841.t1;Parent=MS.gene86841
chr1.1 exon 58565724 58566605 58565724 ID=MS.gene86841.t1.exon1;Parent=MS.gene86841.t1
chr1.1 CDS 58565724 58566605 58565724 ID=cds.MS.gene86841.t1;Parent=MS.gene86841.t1
Gene Sequence

>MS.gene86841

ATGTCTTTCATGAAAACAGTTTTTGGAACTAAACCAGCACCTAGTGTTGATTCGTATAGTTCAAGAGGGCCATCATATAGTTGTCCATTCGTGTTGAAACCTGACATTACTGCACCCGGTACTTCGATCTTAGCGGCATGGCCTACAAATGTTCCTGTGTTGGAATTTGAGTCTCAAAAACATTTCAGCGAATTCAATGTGATAAGTGGAACATCTATGGCGTGTCCTCATGTTGCAGGTGTCGCGGCGCTTTTGAAAGGAGTGCATAGTGATTGGAGCCCAGCAGCTATTCGGTCGGCAATAATGACAACATCAGACATATTTGATAATGCTAAGGAACACATCAAAGACATTGGAACAGACAAAGCGGCAACACCTTTTGCATTGGGAGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCTGGTCTTGTTTATGATGTTGGTGTACAAGATTATGTGAATCTTCTTTGTGCACTTAAATACTCACAAAAAAACATCACTACCATCACAAGATCCTCTTCCAATGATTGCTCTAAACCTTCCTTGGATCTTAACTACCCTTCTTTTATTGCTTTTGTCAATGATGGAAATTCTTCTTCAAGGCCGATACAAGAATTTCATAGAACAGTTACCAATGTTGGTGACGGACAAGCAATTTATGTTGCTAGCATTGCACCAATTAAAGGGTTTCGTGTCACTGTTATCCCAAACAAGTTGGTGTTTAATGAGAAGAATGAGAAGCTAAGCTACAAATTGAGGATTGAAGTTGCAAGTATGACAAAATTAAAGAAAGTGGCTTTTGGATATCTAACATGGATGGATGTGAAGCATGTTGTTAGAAGTCCTATTGTGGTCACCAGCCTCAAATTGAAATTCTAG

Protein sequence

>MS.gene86841.t1

MSFMKTVFGTKPAPSVDSYSSRGPSYSCPFVLKPDITAPGTSILAAWPTNVPVLEFESQKHFSEFNVISGTSMACPHVAGVAALLKGVHSDWSPAAIRSAIMTTSDIFDNAKEHIKDIGTDKAATPFALGAGHVNPNRALDPGLVYDVGVQDYVNLLCALKYSQKNITTITRSSSNDCSKPSLDLNYPSFIAFVNDGNSSSRPIQEFHRTVTNVGDGQAIYVASIAPIKGFRVTVIPNKLVFNEKNEKLSYKLRIEVASMTKLKKVAFGYLTWMDVKHVVRSPIVVTSLKLKF