AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651720 MtrunA17_Chr4g0044851 98.726 471 6 0 1 471 1 471 0.0 961
Msa0651720 MtrunA17_Chr4g0044841 84.289 471 70 2 3 469 1 471 0.0 805
Msa0651720 MtrunA17_Chr1g0153371 67.167 466 146 4 6 469 8 468 0.0 657
Msa0651720 MtrunA17_Chr8g0369791 54.968 473 204 5 1 471 1 466 0.0 540
Msa0651720 MtrunA17_Chr5g0408181 55.579 466 187 7 5 468 14 461 0.0 539
Msa0651720 MtrunA17_Chr1g0164371 54.860 463 199 4 5 466 19 472 7.55e-174 496
Msa0651720 MtrunA17_Chr2g0293421 32.623 469 300 8 11 466 19 484 4.74e-82 262
Msa0651720 MtrunA17_Chr2g0293411 32.809 445 282 7 37 466 41 483 3.53e-79 254
Msa0651720 MtrunA17_Chr6g0455461 31.712 473 301 11 2 467 4 461 2.01e-78 251
Msa0651720 MtrunA17_Chr3g0089361 33.184 446 280 10 36 470 39 477 2.02e-78 252
Msa0651720 MtrunA17_Chr8g0341951 32.889 450 288 7 3 442 1 446 3.11e-78 251
Msa0651720 MtrunA17_Chr3g0078411 31.078 473 304 11 2 467 4 461 5.19e-78 251
Msa0651720 MtrunA17_Chr8g0388921 30.189 477 309 9 6 468 9 475 7.01e-76 245
Msa0651720 MtrunA17_Chr7g0219961 29.978 457 304 8 13 466 16 459 1.88e-73 239
Msa0651720 MtrunA17_Chr3g0107501 30.995 442 292 4 37 466 33 473 3.88e-73 238
Msa0651720 MtrunA17_Chr3g0113321 32.629 426 262 9 33 442 25 441 6.33e-73 238
Msa0651720 MtrunA17_Chr8g0381541 33.570 423 266 7 37 445 43 464 9.75e-73 238
Msa0651720 MtrunA17_Chr3g0141801 30.526 475 312 9 10 471 16 485 1.85e-72 237
Msa0651720 MtrunA17_Chr8g0381571 33.652 419 263 7 37 441 43 460 2.78e-72 236
Msa0651720 MtrunA17_Chr3g0107511 30.672 476 313 6 1 464 1 471 5.06e-72 235
Msa0651720 MtrunA17_Chr5g0400421 31.687 486 303 13 10 470 9 490 7.65e-72 235
Msa0651720 MtrunA17_Chr7g0226771 31.429 455 298 8 6 453 7 454 1.61e-71 234
Msa0651720 MtrunA17_Chr5g0443401 30.271 479 315 8 1 466 1 473 2.18e-71 234
Msa0651720 MtrunA17_Chr5g0397971 30.112 445 298 7 9 442 1 443 4.79e-71 233
Msa0651720 MtrunA17_Chr5g0403931 32.143 476 292 11 13 466 10 476 6.60e-70 230
Msa0651720 MtrunA17_Chr5g0443731 30.979 439 290 6 36 463 28 464 1.11e-68 226
Msa0651720 MtrunA17_Chr8g0372711 29.936 471 315 6 2 464 16 479 3.17e-68 226
Msa0651720 MtrunA17_Chr3g0089351 31.095 402 267 8 72 470 1 395 1.17e-67 221
Msa0651720 MtrunA17_Chr5g0400411 31.884 483 305 11 10 470 9 489 1.10e-66 222
Msa0651720 MtrunA17_Chr8g0372411 30.822 438 287 8 38 464 40 472 2.23e-65 218
Msa0651720 MtrunA17_Chr8g0380471 29.895 475 307 11 6 467 12 473 3.47e-65 218
Msa0651720 MtrunA17_Chr8g0339861 31.963 438 276 12 37 459 45 475 2.25e-64 216
Msa0651720 MtrunA17_Chr8g0380931 29.979 467 283 11 28 467 53 502 9.42e-63 212
Msa0651720 MtrunA17_Chr8g0373441 30.856 444 261 12 2 429 10 423 1.99e-61 206
Msa0651720 MtrunA17_Chr6g0478161 29.605 456 290 11 5 443 23 464 4.17e-58 199
Msa0651720 MtrunA17_Chr8g0381551 29.897 291 190 6 37 314 43 332 3.82e-36 136
Msa0651720 MtrunA17_Chr1g0161671 28.767 292 195 5 37 316 29 319 6.26e-36 135
Msa0651720 MtrunA17_Chr4g0000161 30.061 326 200 10 10 312 6 326 5.65e-32 125
Msa0651720 MtrunA17_Chr5g0404861 43.357 143 76 2 327 466 15 155 5.83e-32 120
Msa0651720 MtrunA17_Chr4g0013471 27.213 305 195 8 37 328 43 333 2.82e-29 119
Msa0651720 MtrunA17_Chr6g0463551 30.726 179 116 2 195 366 12 189 5.27e-29 113
Msa0651720 MtrunA17_Chr4g0000171 28.425 292 187 8 37 313 43 327 3.03e-28 114
Msa0651720 MtrunA17_Chr5g0405001 24.375 480 307 13 3 444 20 481 1.07e-25 109
Msa0651720 MtrunA17_Chr8g0381561 47.115 104 54 1 339 441 8 111 2.20e-25 100
Msa0651720 MtrunA17_Chr1g0162811 25.053 471 311 16 5 444 9 468 1.01e-24 107
Msa0651720 MtrunA17_Chr5g0436981 38.272 162 86 5 36 187 27 184 2.18e-24 100
Msa0651720 MtrunA17_Chr5g0403321 25.410 488 304 17 3 444 1 474 3.09e-24 105
Msa0651720 MtrunA17_Chr3g0101751 24.174 484 314 14 1 444 6 476 6.14e-24 104
Msa0651720 MtrunA17_Chr8g0334891 24.229 454 289 16 33 457 34 461 6.87e-24 104
Msa0651720 MtrunA17_Chr4g0000151 38.281 128 77 2 333 459 5 131 7.90e-24 97.1
Msa0651720 MtrunA17_Chr3g0089291 26.957 230 160 7 72 298 1 225 7.95e-24 99.8
Msa0651720 MtrunA17_Chr7g0235261 25.527 427 261 17 66 455 85 491 1.04e-23 103
Msa0651720 MtrunA17_Chr5g0404881 30.131 229 152 4 3 225 1 227 1.15e-23 99.4
Msa0651720 MtrunA17_Chr1g0174481 23.480 477 317 15 7 446 7 472 1.19e-23 103
Msa0651720 MtrunA17_Chr3g0101691 25.052 479 300 17 9 444 11 473 2.10e-23 102
Msa0651720 MtrunA17_Chr3g0101661 24.380 484 304 17 7 446 9 474 2.77e-23 102
Msa0651720 MtrunA17_Chr1g0160851 25.109 458 273 17 36 446 33 467 3.46e-23 102
Msa0651720 MtrunA17_Chr3g0101671 23.750 480 311 16 6 444 8 473 7.70e-23 101
Msa0651720 MtrunA17_Chr4g0004601 24.877 406 256 14 83 455 123 512 7.91e-23 101
Msa0651720 MtrunA17_Chr1g0176831 23.622 508 325 14 2 470 33 516 1.19e-22 100
Msa0651720 MtrunA17_Chr5g0437001 41.667 108 59 1 334 437 1 108 1.63e-22 94.0
Msa0651720 MtrunA17_Chr2g0314731 22.817 504 337 12 1 470 1 486 1.75e-22 100
Msa0651720 MtrunA17_Chr5g0445421 22.727 462 309 14 7 444 84 521 4.52e-22 99.4
Msa0651720 MtrunA17_Chr3g0101711 23.109 476 316 15 7 444 9 472 4.80e-22 99.0
Msa0651720 MtrunA17_Chr6g0463801 24.401 459 310 12 22 453 23 471 7.47e-22 98.2
Msa0651720 MtrunA17_Chr1g0174441 23.409 487 308 17 6 446 32 499 1.32e-21 97.8
Msa0651720 MtrunA17_Chr3g0101801 23.260 503 327 17 1 461 5 490 1.46e-21 97.4
Msa0651720 MtrunA17_Chr1g0174451 22.567 483 326 13 3 446 5 478 1.53e-21 97.4
Msa0651720 MtrunA17_Chr4g0035921 23.965 459 282 15 38 444 38 481 1.68e-21 97.4
Msa0651720 MtrunA17_Chr5g0395321 23.567 471 321 13 2 444 6 465 2.81e-21 96.7
Msa0651720 MtrunA17_Chr7g0258221 23.958 480 314 13 7 446 8 476 4.36e-21 95.9
Msa0651720 MtrunA17_Chr5g0445451 23.441 465 323 15 7 444 10 468 5.61e-21 95.5
Msa0651720 MtrunA17_Chr5g0445381 23.789 475 317 16 2 444 38 499 5.90e-21 95.9
Msa0651720 MtrunA17_Chr7g0265611 22.857 455 301 13 31 444 40 485 7.22e-21 95.5
Msa0651720 MtrunA17_Chr6g0463541 38.235 102 63 0 364 465 4 105 8.61e-21 87.4
Msa0651720 MtrunA17_Chr2g0310381 22.453 481 312 14 5 444 1 461 1.03e-20 94.7
Msa0651720 MtrunA17_Chr8g0334941 27.843 255 158 7 216 457 65 306 1.41e-20 92.8
Msa0651720 MtrunA17_Chr5g0395331 24.843 479 299 17 11 444 10 472 1.60e-20 94.4
Msa0651720 MtrunA17_Chr7g0218611 22.026 454 314 9 25 444 21 468 1.89e-20 94.0
Msa0651720 MtrunA17_Chr3g0084921 23.918 485 319 16 9 451 10 486 2.09e-20 94.0
Msa0651720 MtrunA17_Chr3g0101701 24.109 477 311 16 9 446 11 475 2.66e-20 93.6
Msa0651720 MtrunA17_Chr4g0011901 24.190 463 289 14 26 444 20 464 3.24e-20 93.2
Msa0651720 MtrunA17_Chr8g0361471 24.211 475 314 17 6 444 5 469 3.41e-20 93.2
Msa0651720 MtrunA17_Chr8g0339331 25.431 464 296 18 24 444 28 484 3.83e-20 93.2
Msa0651720 MtrunA17_Chr2g0314721 23.632 457 306 10 37 459 44 491 4.51e-20 92.8
Msa0651720 MtrunA17_Chr8g0362731 26.234 385 229 16 97 444 15 381 5.18e-20 92.0
Msa0651720 MtrunA17_Chr8g0356001 24.790 476 305 16 9 444 12 474 6.84e-20 92.4
Msa0651720 MtrunA17_Chr1g0205371 25.474 475 316 14 3 446 1 468 7.23e-20 92.0
Msa0651720 MtrunA17_Chr8g0372251 22.494 449 295 11 38 444 36 473 7.38e-20 92.4
Msa0651720 MtrunA17_Chr2g0310391 21.174 477 315 13 5 440 1 457 9.26e-20 92.0
Msa0651720 MtrunA17_Chr8g0382901 22.511 462 314 12 5 444 4 443 9.39e-20 92.8
Msa0651720 MtrunA17_Chr6g0466331 25.000 476 309 19 6 444 5 469 9.41e-20 92.0
Msa0651720 MtrunA17_Chr6g0465511 24.948 481 303 20 6 444 5 469 1.01e-19 91.7
Msa0651720 MtrunA17_Chr1g0205361 25.773 485 286 18 11 446 8 467 1.04e-19 91.7
Msa0651720 MtrunA17_Chr4g0058231 24.341 493 301 20 10 449 1 474 1.30e-19 91.3
Msa0651720 MtrunA17_Chr8g0364651 23.658 503 296 20 10 454 6 478 1.36e-19 91.3
Msa0651720 MtrunA17_Chr3g0101631 23.077 481 314 13 3 444 1 464 1.37e-19 91.3
Msa0651720 MtrunA17_Chr3g0101611 23.991 446 293 13 36 445 37 472 1.42e-19 91.3
Msa0651720 MtrunA17_Chr3g0116741 23.614 487 297 14 13 452 33 491 1.50e-19 91.3
Msa0651720 MtrunA17_Chr4g0011981 24.123 456 298 12 26 444 20 464 1.57e-19 91.3
Msa0651720 MtrunA17_Chr3g0101821 22.244 499 338 19 6 466 3 489 2.18e-19 90.9
Msa0651720 MtrunA17_Chr1g0162801 24.426 479 307 18 6 444 8 471 2.30e-19 90.9
Msa0651720 MtrunA17_Chr1g0167321 24.431 483 309 14 3 444 1 468 3.19e-19 90.1
Msa0651720 MtrunA17_Chr7g0215181 26.349 315 205 11 149 444 176 482 3.51e-19 90.1
Msa0651720 MtrunA17_Chr1g0160861 27.511 229 150 5 229 446 85 308 3.64e-19 88.6
Msa0651720 MtrunA17_Chr8g0390881 22.594 478 319 15 5 444 8 472 4.27e-19 89.7
Msa0651720 MtrunA17_Chr5g0403351 23.739 476 313 18 6 444 9 471 5.26e-19 89.7
Msa0651720 MtrunA17_Chr3g0089381 31.677 161 106 2 208 366 34 192 5.99e-19 85.5
Msa0651720 MtrunA17_Chr5g0430031 22.410 473 320 15 6 444 13 472 6.11e-19 89.4
Msa0651720 MtrunA17_Chr6g0463561 30.625 160 100 2 7 161 14 167 6.22e-19 84.7
Msa0651720 MtrunA17_Chr4g0057001 24.276 449 295 15 33 444 44 484 6.53e-19 89.4
Msa0651720 MtrunA17_Chr6g0484811 22.622 473 320 14 8 444 11 473 1.01e-18 88.6
Msa0651720 MtrunA17_Chr3g0128461 29.778 225 140 7 231 444 280 497 1.14e-18 88.6
Msa0651720 MtrunA17_Chr1g0161651 25.532 282 157 6 37 267 43 322 1.16e-18 87.0
Msa0651720 MtrunA17_Chr3g0101601 24.000 475 318 14 3 444 1 465 2.12e-18 87.8
Msa0651720 MtrunA17_Chr3g0101651 23.591 479 311 16 9 446 11 475 3.67e-18 87.0
Msa0651720 MtrunA17_Chr6g0458561 23.505 485 315 20 3 444 26 497 4.23e-18 87.0
Msa0651720 MtrunA17_Chr8g0377341 22.426 437 294 12 40 442 70 495 4.72e-18 86.7
Msa0651720 MtrunA17_Chr4g0020041 22.176 478 328 15 3 444 1 470 4.86e-18 86.7
Msa0651720 MtrunA17_Chr7g0262111 26.933 401 256 15 69 444 90 478 5.17e-18 86.7
Msa0651720 MtrunA17_Chr5g0401681 20.502 478 328 12 2 446 5 463 5.31e-18 86.7
Msa0651720 MtrunA17_Chr1g0174471 22.774 483 318 16 7 446 23 493 5.52e-18 86.7
Msa0651720 MtrunA17_Chr6g0484841 22.348 443 304 13 36 444 36 472 6.03e-18 86.3
Msa0651720 MtrunA17_Chr3g0101571 22.045 440 305 13 36 444 35 467 6.88e-18 86.3
Msa0651720 MtrunA17_Chr2g0296651 23.467 473 310 13 8 446 9 463 7.31e-18 86.3
Msa0651720 MtrunA17_Chr4g0011961 23.950 476 307 15 8 444 4 463 9.11e-18 85.9
Msa0651720 MtrunA17_Chr4g0046321 23.821 424 277 12 67 451 65 481 9.45e-18 85.9
Msa0651720 MtrunA17_Chr5g0446161 23.340 467 321 14 7 444 10 468 1.12e-17 85.5
Msa0651720 MtrunA17_Chr8g0387101 25.057 439 285 15 61 458 58 493 1.23e-17 85.5
Msa0651720 MtrunA17_Chr2g0286091 23.077 442 289 14 34 438 38 465 1.49e-17 85.1
Msa0651720 MtrunA17_Chr4g0063221 23.702 443 290 17 61 467 86 516 1.63e-17 85.1
Msa0651720 MtrunA17_Chr5g0445461 22.175 469 324 16 7 444 10 468 1.74e-17 85.1
Msa0651720 MtrunA17_Chr4g0024771 21.382 463 331 14 11 444 10 468 2.45e-17 84.3
Msa0651720 MtrunA17_Chr4g0039901 23.620 453 283 16 36 444 34 467 3.53e-17 84.0
Msa0651720 MtrunA17_Chr0c19g0493771 26.009 223 142 6 239 445 406 621 4.02e-17 84.3
Msa0651720 MtrunA17_Chr3g0101761 21.684 475 328 16 6 444 3 469 4.26e-17 83.6
Msa0651720 MtrunA17_Chr4g0053621 21.124 445 306 14 37 445 31 466 4.78e-17 83.6
Msa0651720 MtrunA17_Chr5g0406651 23.881 469 297 14 20 444 13 465 5.19e-17 83.6
Msa0651720 MtrunA17_Chr5g0446151 22.500 440 298 13 37 444 41 469 5.71e-17 83.2
Msa0651720 MtrunA17_Chr8g0357421 24.204 471 316 18 6 444 8 469 5.73e-17 83.2
Msa0651720 MtrunA17_Chr1g0179811 22.611 429 265 15 69 449 108 517 7.57e-17 83.2
Msa0651720 MtrunA17_Chr5g0431511 23.441 465 307 16 37 464 33 485 9.10e-17 82.8
Msa0651720 MtrunA17_Chr1g0154731 22.565 421 302 10 69 470 88 503 1.06e-16 82.4
Msa0651720 MtrunA17_Chr3g0101731 22.176 478 322 15 5 444 4 469 1.19e-16 82.4
Msa0651720 MtrunA17_Chr5g0431501 22.124 452 294 15 37 444 33 470 1.29e-16 82.4
Msa0651720 MtrunA17_Chr5g0431461 22.124 452 294 15 37 444 33 470 1.29e-16 82.4
Msa0651720 MtrunA17_Chr1g0200961 23.094 446 295 13 38 444 29 465 1.73e-16 81.6
Msa0651720 MtrunA17_Chr3g0101811 22.287 516 329 20 9 466 3 504 1.80e-16 82.0
Msa0651720 MtrunA17_Chr8g0357431 22.013 477 330 13 3 444 1 470 1.99e-16 81.6
Msa0651720 MtrunA17_Chr6g0457421 28.085 235 154 7 219 444 252 480 2.07e-16 81.6
Msa0651720 MtrunA17_Chr3g0135841 22.128 470 288 15 39 440 44 503 2.33e-16 81.6
Msa0651720 MtrunA17_Chr8g0370651 22.133 497 328 15 7 454 17 503 2.34e-16 81.6
Msa0651720 MtrunA17_Chr3g0101831 22.355 501 333 18 9 466 3 490 3.12e-16 81.3
Msa0651720 MtrunA17_Chr3g0116681 23.667 469 307 18 11 444 19 471 3.70e-16 80.9
Msa0651720 MtrunA17_Chr7g0218601 23.093 472 295 14 20 444 17 467 4.09e-16 80.5
Msa0651720 MtrunA17_Chr7g0255531 24.131 489 295 20 3 442 1 462 5.63e-16 80.1
Msa0651720 MtrunA17_Chr3g0101581 23.620 453 284 18 36 444 36 470 5.64e-16 80.1
Msa0651720 MtrunA17_Chr1g0161641 42.105 76 43 1 367 441 13 88 6.56e-16 72.8
Msa0651720 MtrunA17_Chr3g0101721 22.560 461 309 16 37 461 37 485 8.80e-16 79.7
Msa0651720 MtrunA17_Chr1g0207841 23.684 418 261 15 71 451 93 489 1.01e-15 79.7
Msa0651720 MtrunA17_Chr4g0047641 23.108 489 304 17 7 444 17 484 1.09e-15 79.3
Msa0651720 MtrunA17_Chr2g0280261 21.219 443 296 9 37 442 34 460 1.29e-15 79.0
Msa0651720 MtrunA17_Chr5g0419691 23.831 449 286 13 38 444 30 464 1.97e-15 78.6
Msa0651720 MtrunA17_Chr5g0409051 22.407 482 281 17 31 444 23 479 2.08e-15 78.6
Msa0651720 MtrunA17_Chr4g0017411 27.103 214 147 3 231 443 243 448 2.40e-15 78.2
Msa0651720 MtrunA17_Chr1g0151221 22.458 472 279 14 39 440 41 495 2.76e-15 78.2
Msa0651720 MtrunA17_Chr4g0030711 22.759 435 286 11 62 451 61 490 2.85e-15 78.2
Msa0651720 MtrunA17_Chr6g0472221 23.697 422 267 15 61 444 95 499 2.97e-15 78.2
Msa0651720 MtrunA17_Chr5g0396521 25.769 260 151 8 227 452 299 550 3.27e-15 78.2
Msa0651720 MtrunA17_Chr5g0430101 20.886 474 324 15 6 444 12 469 3.92e-15 77.8
Msa0651720 MtrunA17_Chr5g0413911 24.691 486 286 18 25 445 30 500 4.16e-15 77.8
Msa0651720 MtrunA17_Chr4g0052851 27.570 214 146 3 231 443 246 451 4.81e-15 77.4
Msa0651720 MtrunA17_Chr5g0430081 21.712 479 331 15 1 444 1 470 5.10e-15 77.4
Msa0651720 MtrunA17_Chr5g0431671 21.818 440 304 15 37 444 38 469 5.68e-15 77.0
Msa0651720 MtrunA17_Chr7g0258211 23.276 232 154 4 235 446 255 482 6.25e-15 77.0
Msa0651720 MtrunA17_Chr4g0056951 20.698 430 298 13 52 444 56 479 9.39e-15 76.6
Msa0651720 MtrunA17_Chr5g0395381 29.500 200 129 6 251 444 247 440 1.23e-14 75.9
Msa0651720 MtrunA17_Chr2g0280081 26.097 433 257 18 61 444 56 474 1.26e-14 76.6
Msa0651720 MtrunA17_Chr2g0280081 24.826 431 265 16 61 444 557 975 8.73e-14 73.9
Msa0651720 MtrunA17_Chr4g0011871 23.333 450 288 12 38 444 30 465 1.35e-14 75.9
Msa0651720 MtrunA17_Chr4g0011921 24.641 487 291 16 8 444 4 464 1.46e-14 75.9
Msa0651720 MtrunA17_Chr6g0451681 21.909 461 285 16 2 440 31 438 1.46e-14 75.9
Msa0651720 MtrunA17_Chr8g0370641 21.830 481 320 14 23 454 26 499 1.79e-14 75.5
Msa0651720 MtrunA17_Chr5g0400391 39.535 86 51 1 385 469 2 87 2.66e-14 68.9
Msa0651720 MtrunA17_Chr5g0401691 23.500 200 146 3 252 448 287 482 3.74e-14 74.7
Msa0651720 MtrunA17_Chr8g0362481 21.867 407 270 13 81 446 9 408 4.08e-14 74.3
Msa0651720 MtrunA17_Chr5g0403331 22.199 482 321 18 3 444 5 472 5.72e-14 73.9
Msa0651720 MtrunA17_Chr4g0076161 22.505 471 326 15 6 444 8 471 6.09e-14 73.9
Msa0651720 MtrunA17_Chr2g0296661 25.389 193 139 2 252 443 277 465 6.48e-14 73.9
Msa0651720 MtrunA17_Chr5g0430131 21.206 481 332 15 1 444 1 471 7.14e-14 73.6
Msa0651720 MtrunA17_Chr4g0052881 22.222 207 156 2 238 443 259 461 7.34e-14 73.6
Msa0651720 MtrunA17_Chr5g0419451 23.778 450 297 17 26 442 50 486 9.77e-14 73.2
Msa0651720 MtrunA17_Chr4g0052861 22.066 213 161 2 235 446 255 463 1.06e-13 73.2
Msa0651720 MtrunA17_Chr8g0364631 24.499 449 292 17 37 443 32 475 1.25e-13 72.8
Msa0651720 MtrunA17_Chr1g0213671 23.620 453 288 16 36 442 33 473 2.05e-13 72.4
Msa0651720 MtrunA17_Chr2g0280011 30.508 177 108 4 280 444 9 182 4.89e-13 68.2
Msa0651720 MtrunA17_Chr5g0445531 21.461 438 306 13 37 444 38 467 5.56e-13 70.9
Msa0651720 MtrunA17_Chr2g0288661 22.299 435 275 12 45 444 85 491 1.17e-12 70.1
Msa0651720 MtrunA17_Chr6g0479681 22.385 478 317 17 35 464 52 523 1.43e-12 69.7
Msa0651720 MtrunA17_Chr7g0246181 26.141 241 162 7 217 445 235 471 2.65e-12 68.9
Msa0651720 MtrunA17_Chr7g0246221 24.280 243 166 6 217 445 234 472 2.65e-12 68.9
Msa0651720 MtrunA17_Chr4g0058211 26.374 182 124 3 279 454 19 196 2.68e-12 66.2
Msa0651720 MtrunA17_Chr3g0101741 22.365 389 263 14 83 442 11 389 3.99e-12 68.2
Msa0651720 MtrunA17_Chr4g0026941 28.235 255 154 9 231 468 295 537 8.91e-12 67.4
Msa0651720 MtrunA17_Chr4g0058191 25.946 185 127 3 276 454 288 468 9.61e-12 67.0
Msa0651720 MtrunA17_Chr2g0280061 30.556 180 104 5 280 444 9 182 1.18e-11 64.3
Msa0651720 MtrunA17_Chr1g0156081 20.978 491 326 13 5 444 24 503 1.62e-11 66.2
Msa0651720 MtrunA17_Chr8g0354531 24.000 400 253 14 81 444 234 618 1.89e-11 66.2
Msa0651720 MtrunA17_Chr2g0280041 22.864 433 271 15 61 444 88 506 2.15e-11 65.9
Msa0651720 MtrunA17_Chr7g0248991 26.816 179 114 5 239 407 188 359 3.14e-11 64.7
Msa0651720 MtrunA17_Chr2g0313791 23.457 405 248 15 80 444 102 484 3.84e-11 65.1
Msa0651720 MtrunA17_Chr8g0373431 48.333 60 30 1 407 466 4 62 3.85e-11 58.9
Msa0651720 MtrunA17_Chr7g0246151 25.108 231 154 7 229 445 246 471 4.65e-11 64.7
Msa0651720 MtrunA17_Chr2g0307291 23.218 435 271 15 45 444 85 491 5.42e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651720 AT3G19270.2 69.181 464 134 2 6 469 11 465 0.0 684
Msa0651720 AT3G19270.1 68.879 437 127 2 6 442 11 438 0.0 642
Msa0651720 AT4G19230.1 57.356 469 190 5 3 469 1 461 0.0 577
Msa0651720 AT5G45340.1 56.833 461 185 6 9 469 15 461 0.0 559
Msa0651720 AT4G19230.2 56.277 462 185 7 3 457 1 452 0.0 545
Msa0651720 AT5G45340.2 58.213 414 166 4 28 441 27 433 0.0 525
Msa0651720 AT2G29090.2 56.713 432 185 2 36 466 48 478 1.12e-179 512
Msa0651720 AT2G29090.1 56.713 432 185 2 36 466 48 478 1.12e-179 512
Msa0651720 AT2G29090.3 54.948 384 171 2 84 466 1 383 2.42e-149 431
Msa0651720 AT2G29090.4 52.920 274 127 2 36 308 48 320 5.13e-95 291
Msa0651720 AT1G05160.2 34.831 445 272 9 37 466 45 486 1.52e-86 274
Msa0651720 AT1G05160.1 34.831 445 272 9 37 466 45 486 1.52e-86 274
Msa0651720 AT2G32440.2 35.146 478 292 10 6 469 13 486 1.57e-85 271
Msa0651720 AT2G32440.1 35.146 478 292 10 6 469 13 486 1.57e-85 271
Msa0651720 AT5G05690.1 34.842 442 264 9 37 464 31 462 5.00e-76 246
Msa0651720 AT5G36110.1 33.186 452 271 11 35 466 32 472 3.00e-74 241
Msa0651720 AT1G19630.1 31.933 476 306 11 7 469 4 474 2.31e-73 239
Msa0651720 AT3G30180.1 31.655 417 278 6 33 446 30 442 4.21e-73 238
Msa0651720 AT5G38970.1 30.112 445 301 8 5 446 5 442 1.69e-72 236
Msa0651720 AT1G19630.3 31.696 448 289 10 7 442 4 446 1.65e-68 226
Msa0651720 AT3G13730.1 32.414 435 274 8 24 442 35 465 2.09e-68 226
Msa0651720 AT3G50660.1 30.849 483 276 10 37 470 39 512 2.64e-68 227
Msa0651720 AT1G12740.1 30.357 448 295 5 10 445 4 446 1.21e-67 224
Msa0651720 AT3G13730.2 32.258 434 274 8 24 441 35 464 4.40e-67 222
Msa0651720 AT1G12740.2 30.176 454 294 6 10 445 4 452 8.73e-66 219
Msa0651720 AT1G12740.4 29.956 454 295 6 10 445 4 452 3.51e-65 218
Msa0651720 AT4G36380.1 31.265 419 274 6 37 442 69 486 7.66e-65 218
Msa0651720 AT5G05690.2 34.933 375 225 7 37 401 31 396 1.59e-63 211
Msa0651720 AT2G42850.1 30.737 475 305 10 9 466 12 479 1.02e-62 211
Msa0651720 AT5G38970.3 29.676 401 274 7 5 404 5 398 6.24e-62 207
Msa0651720 AT5G48000.2 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT5G48000.4 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT5G48000.7 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT5G48000.6 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT5G48000.5 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT5G48000.3 30.543 442 293 9 36 466 34 472 3.63e-57 196
Msa0651720 AT1G55940.1 30.769 429 264 13 36 440 44 463 4.47e-57 196
Msa0651720 AT5G48000.1 30.543 442 293 9 36 466 75 513 1.09e-56 196
Msa0651720 AT1G73340.1 29.535 430 268 9 33 442 39 453 1.26e-56 195
Msa0651720 AT1G55940.2 30.184 434 270 13 36 445 44 468 1.61e-56 196
Msa0651720 AT1G19630.2 30.958 407 264 10 7 401 4 405 1.40e-55 191
Msa0651720 AT5G14400.2 29.241 448 265 13 42 467 1 418 1.44e-55 191
Msa0651720 AT5G14400.3 29.665 418 248 11 42 442 1 389 1.54e-53 184
Msa0651720 AT3G50660.2 29.602 402 237 9 37 401 39 431 3.03e-52 182
Msa0651720 AT5G38970.2 28.763 372 256 6 89 457 4 369 6.78e-52 180
Msa0651720 AT5G38970.4 28.763 372 256 6 89 457 4 369 6.78e-52 180
Msa0651720 AT1G78490.1 29.630 432 290 9 36 456 34 462 1.27e-51 182
Msa0651720 AT3G44970.1 28.369 423 284 7 36 444 34 451 6.19e-51 180
Msa0651720 AT5G05690.3 32.670 352 217 8 123 464 2 343 8.06e-50 174
Msa0651720 AT1G65670.1 29.384 422 271 9 36 444 34 441 2.34e-47 170
Msa0651720 AT4G15300.2 27.962 422 281 9 36 444 34 445 4.21e-47 169
Msa0651720 AT4G15300.3 27.962 422 281 9 36 444 24 435 4.74e-47 169
Msa0651720 AT4G15396.1 28.095 420 284 10 36 444 34 446 1.69e-46 168
Msa0651720 AT4G15393.2 28.199 422 279 12 36 444 34 444 4.19e-46 167
Msa0651720 AT4G15396.3 27.990 418 283 10 36 442 34 444 4.42e-45 164
Msa0651720 AT5G36110.2 30.362 359 221 9 35 375 32 379 8.11e-44 159
Msa0651720 AT5G14400.1 28.753 393 232 12 93 467 2 364 5.48e-43 156
Msa0651720 AT1G12740.3 27.246 345 237 4 33 368 27 366 7.93e-43 155
Msa0651720 AT4G15300.1 26.577 444 281 11 36 444 24 457 5.65e-41 153
Msa0651720 AT1G78490.2 28.075 374 259 7 36 401 34 405 2.41e-40 150
Msa0651720 AT4G15396.2 26.540 422 267 11 36 444 34 425 8.56e-39 146
Msa0651720 AT4G15310.1 28.571 427 280 11 33 444 32 448 1.33e-38 146
Msa0651720 AT4G36380.2 28.024 339 234 5 37 366 69 406 3.68e-38 144
Msa0651720 AT2G42850.2 29.688 384 246 10 9 375 12 388 3.17e-36 138
Msa0651720 AT4G15396.4 26.542 373 261 8 36 401 34 400 2.21e-35 136
Msa0651720 AT4G15393.1 26.933 375 255 10 36 401 34 398 2.34e-35 136
Msa0651720 AT5G14400.4 27.859 341 219 9 42 366 1 330 4.27e-35 134
Msa0651720 AT5G36130.1 44.444 135 73 2 334 466 1 135 7.31e-32 119
Msa0651720 AT5G36140.1 28.966 290 185 8 35 309 31 314 3.25e-31 122
Msa0651720 AT3G30290.1 24.603 378 272 8 73 444 5 375 7.75e-29 118
Msa0651720 AT4G13770.1 25.210 476 303 15 6 444 8 467 8.30e-26 110
Msa0651720 AT4G15393.3 24.599 374 232 10 36 401 34 365 5.73e-24 103
Msa0651720 AT5G04330.1 22.467 454 310 12 28 444 24 472 8.25e-22 98.6
Msa0651720 AT3G44970.2 23.565 331 237 6 36 355 34 359 8.69e-22 97.1
Msa0651720 AT1G11680.1 24.107 448 296 14 34 457 36 463 1.64e-21 97.4
Msa0651720 AT5G57220.1 23.918 439 291 12 37 445 30 455 2.20e-21 97.1
Msa0651720 AT2G45560.1 23.810 483 319 16 3 444 1 475 2.76e-21 97.1
Msa0651720 AT5G25120.1 25.210 476 298 17 7 444 6 461 1.26e-20 95.1
Msa0651720 AT4G37370.1 24.545 220 161 2 230 448 247 462 1.94e-20 94.4
Msa0651720 AT3G28740.1 25.346 217 157 2 230 445 256 468 2.58e-20 94.0
Msa0651720 AT3G20940.1 23.385 449 305 14 33 446 38 482 2.77e-20 94.0
Msa0651720 AT4G37320.1 21.784 482 322 16 3 448 1 463 3.56e-20 93.6
Msa0651720 AT2G26710.1 22.573 443 296 13 61 470 87 515 5.17e-20 93.2
Msa0651720 AT4G37400.1 26.531 245 163 5 215 449 228 465 1.08e-19 92.0
Msa0651720 AT4G37430.1 22.453 481 310 19 7 445 5 464 1.24e-19 92.0
Msa0651720 AT1G74110.1 23.729 413 253 15 83 446 112 511 1.79e-19 91.7
Msa0651720 AT3G10560.1 23.293 498 313 17 4 454 17 492 2.36e-19 91.3
Msa0651720 AT4G31500.1 24.686 478 312 17 3 444 1 466 7.84e-19 89.4
Msa0651720 AT2G23190.1 23.853 218 161 2 230 446 292 505 8.71e-19 89.4
Msa0651720 AT5G52400.1 25.688 436 275 15 62 464 94 513 8.71e-19 89.4
Msa0651720 AT5G24910.1 21.868 439 303 13 66 469 98 531 1.35e-18 89.0
Msa0651720 AT3G61040.1 24.439 446 298 12 36 451 32 468 2.81e-18 87.8
Msa0651720 AT2G42250.1 23.878 490 324 14 3 448 1 485 3.16e-18 87.8
Msa0651720 AT4G36220.1 22.172 442 298 9 44 444 47 483 3.79e-18 87.4
Msa0651720 AT1G11600.1 22.541 488 315 14 4 442 5 478 6.53e-18 86.7
Msa0651720 AT1G66540.2 25.229 218 155 3 232 448 81 291 6.59e-18 85.1
Msa0651720 AT2G46660.1 23.649 444 281 18 39 442 72 497 9.32e-18 86.3
Msa0651720 AT1G66540.1 25.229 218 155 3 232 448 140 350 1.00e-17 85.1
Msa0651720 AT4G37360.1 26.768 198 140 2 252 448 270 463 1.21e-17 85.9
Msa0651720 AT2G40890.1 24.116 481 295 19 8 442 5 461 1.79e-17 85.5
Msa0651720 AT4G37340.1 24.434 221 161 3 230 448 247 463 1.81e-17 85.1
Msa0651720 AT4G15110.1 26.154 260 150 7 227 452 307 558 1.99e-17 85.5
Msa0651720 AT5G09970.1 22.661 481 321 18 2 442 35 504 2.72e-17 84.7
Msa0651720 AT4G37410.1 25.523 239 163 5 215 445 230 461 9.21e-17 83.2
Msa0651720 AT2G26170.1 22.444 450 285 12 39 436 47 484 1.06e-16 83.2
Msa0651720 AT2G34500.1 22.543 346 232 10 111 432 113 446 1.36e-16 82.4
Msa0651720 AT2G28860.1 22.409 357 246 8 111 445 114 461 1.38e-16 82.4
Msa0651720 AT5G25130.1 23.701 481 299 18 7 444 6 461 2.34e-16 82.0
Msa0651720 AT2G27010.1 21.531 418 287 13 68 458 66 469 2.60e-16 81.6
Msa0651720 AT2G45580.1 22.321 448 290 13 47 451 48 480 3.42e-16 81.3
Msa0651720 AT5G67310.1 22.981 483 305 17 3 443 12 469 3.89e-16 81.3
Msa0651720 AT4G37330.1 24.771 218 159 2 230 446 245 458 5.37e-16 80.9
Msa0651720 AT2G28850.1 22.409 357 246 7 111 445 114 461 5.58e-16 80.5
Msa0651720 AT3G53130.1 23.294 425 267 14 69 449 108 517 9.23e-16 80.1
Msa0651720 AT1G33720.1 25.259 483 312 20 3 444 1 475 1.09e-15 79.7
Msa0651720 AT5G24900.2 26.961 204 133 5 272 466 210 406 1.28e-15 79.0
Msa0651720 AT2G34490.1 21.649 485 338 16 5 462 15 484 1.45e-15 79.3
Msa0651720 AT5G24900.1 21.315 441 304 10 62 466 90 523 1.46e-15 79.3
Msa0651720 AT2G23220.1 21.818 220 167 2 230 448 263 478 1.61e-15 79.3
Msa0651720 AT4G27710.1 23.239 426 291 14 68 464 93 511 1.78e-15 79.3
Msa0651720 AT5G24950.1 22.967 492 321 19 3 454 1 474 2.17e-15 79.0
Msa0651720 AT4G31940.1 27.604 192 120 6 248 425 283 469 5.10e-15 77.8
Msa0651720 AT1G64930.1 29.353 201 122 7 261 448 291 484 5.65e-15 77.8
Msa0651720 AT5G47990.1 22.642 424 280 18 62 446 67 481 7.72e-15 77.0
Msa0651720 AT2G45570.1 23.148 432 284 12 53 444 53 476 7.88e-15 77.0
Msa0651720 AT1G50520.1 21.578 431 290 14 62 452 68 490 8.95e-15 77.0
Msa0651720 AT3G26310.1 22.594 478 320 18 3 444 1 464 1.04e-14 76.6
Msa0651720 AT3G52970.1 23.400 453 303 11 33 444 32 481 1.17e-14 76.6
Msa0651720 AT4G31950.1 26.484 219 136 7 227 425 244 457 1.22e-14 76.6
Msa0651720 AT2G30750.1 24.115 452 307 16 31 452 27 472 1.39e-14 76.3
Msa0651720 AT2G24180.1 23.318 446 296 16 37 445 36 472 2.05e-14 75.9
Msa0651720 AT4G37310.1 24.314 255 176 6 223 464 238 488 2.12e-14 75.9
Msa0651720 AT5G36220.1 19.315 321 239 5 128 446 165 467 2.76e-14 75.5
Msa0651720 AT5G36220.2 20.377 265 198 3 183 446 69 321 8.45e-14 73.2
Msa0651720 AT4G12330.1 22.877 424 286 11 57 444 63 481 8.55e-14 73.9
Msa0651720 AT2G46950.1 22.055 399 284 10 66 441 146 540 8.73e-14 73.9
Msa0651720 AT3G26200.1 25.113 442 281 16 33 430 24 459 1.15e-13 73.6
Msa0651720 AT3G52970.2 22.484 467 304 12 33 444 32 495 1.17e-13 73.6
Msa0651720 AT1G50560.1 24.096 249 169 6 214 446 241 485 1.68e-13 73.2
Msa0651720 AT2G26170.2 26.695 236 152 5 215 436 173 401 1.82e-13 72.8
Msa0651720 AT3G26190.1 24.832 447 276 17 33 430 24 459 3.29e-13 72.0
Msa0651720 AT2G45580.2 23.770 244 164 5 223 451 90 326 3.54e-13 71.2
Msa0651720 AT3G14690.2 23.058 412 267 14 67 444 125 520 6.61e-13 71.2
Msa0651720 AT3G14690.1 23.058 412 267 14 67 444 90 485 8.82e-13 70.9
Msa0651720 AT2G22330.1 19.309 492 342 14 10 452 27 512 1.26e-12 70.5
Msa0651720 AT2G22330.2 19.309 492 342 14 10 452 50 535 1.30e-12 70.5
Msa0651720 AT1G75130.1 24.084 382 252 13 69 425 89 457 1.50e-12 70.1
Msa0651720 AT2G45550.1 24.020 204 145 3 247 444 276 475 1.59e-12 70.1
Msa0651720 AT5G05260.2 20.000 510 341 16 3 454 2 502 2.20e-12 69.7
Msa0651720 AT1G28430.1 21.519 237 168 4 230 452 253 485 2.71e-12 69.3
Msa0651720 AT1G34540.1 22.304 408 265 14 83 448 77 474 3.46e-12 68.9
Msa0651720 AT4G15360.1 20.755 477 336 13 2 444 8 476 4.00e-12 68.6
Msa0651720 AT3G44250.1 24.444 450 273 19 33 430 24 458 4.07e-12 68.6
Msa0651720 AT4G13290.1 23.620 453 292 17 28 444 24 458 5.48e-12 68.2
Msa0651720 AT3G14630.1 23.821 424 282 15 69 462 88 500 7.75e-12 67.8
Msa0651720 AT3G14630.2 23.821 424 282 15 69 462 143 555 1.60e-11 67.0
Msa0651720 AT3G53300.1 21.174 477 308 18 34 462 25 481 1.95e-11 66.6
Msa0651720 AT3G26170.1 23.902 205 143 4 250 444 268 469 5.06e-11 65.1
Msa0651720 AT4G15350.1 21.429 420 291 14 62 446 60 475 7.54e-11 64.7
Msa0651720 AT3G20120.4 20.000 415 290 12 68 446 72 480 8.24e-11 64.7
Msa0651720 AT3G20960.2 20.241 415 289 12 68 446 72 480 8.26e-11 64.7
Msa0651720 AT3G20100.1 21.639 476 331 16 8 446 11 481 9.30e-11 64.3

Find 142 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAAATTTACCTAAATT+TGG 0.175919 4_3:-59192695 None:intergenic
CGCTTTCCATGAAATGAAAA+AGG 0.175957 4_3:+59190875 Msa0651720:CDS
ATCAATTTCTTGATTGATTC+AGG 0.185642 4_3:-59190786 None:intergenic
AATAAGCTTCTCTTTGCTTT+TGG 0.189516 4_3:-59190688 None:intergenic
GATGTTCCGGGTATCTTATT+TGG 0.196265 4_3:-59191360 None:intergenic
CTTAAGCTGTTCTCTATAAT+TGG 0.196410 4_3:-59191298 None:intergenic
AAAAGCAAAGAGAAGCTTAT+TGG 0.203855 4_3:+59190690 Msa0651720:CDS
TAAAATCAACATGTTCAATT+TGG 0.206623 4_3:-59192656 None:intergenic
CTAAACTACAAGGATGAAAA+AGG 0.227377 4_3:+59191636 Msa0651720:CDS
TTATGGCGTCAAGAAGTTTC+TGG 0.232222 4_3:-59191770 None:intergenic
GGATTGGGAATGGGCTATAT+TGG 0.245695 4_3:-59192847 None:intergenic
GCATCATATCATTCACGTTT+AGG 0.258699 4_3:+59192173 Msa0651720:CDS
ATCATACTCCAAAGCTCTTT+TGG 0.265661 4_3:+59191380 Msa0651720:CDS
TGAAAAGTTTCTCCTATATA+AGG 0.281789 4_3:-59190392 None:intergenic
TGAGGAGCAGGGTAGAATTC+TGG 0.289769 4_3:-59192399 None:intergenic
CATCATATCATTCACGTTTA+GGG 0.289792 4_3:+59192174 Msa0651720:CDS
TTAGAAGCAAAGAAGATGTT+AGG 0.291777 4_3:-59190431 None:intergenic
ATTTAATTTGAAGACTAATC+TGG 0.295395 4_3:+59193264 Msa0651720:three_prime_UTR
TTGCTACACTTGCATGTATA+TGG 0.301879 4_3:+59190247 Msa0651720:exon
GTTTGGCAGGTGGGAGGTAG+TGG 0.304492 4_3:+59192808 Msa0651720:intron
TTGTATTGTGTAGGTGATAT+TGG 0.305128 4_3:+59192132 Msa0651720:intron
TGTGTCATCAACTGGTATTT+TGG 0.312166 4_3:+59193170 Msa0651720:three_prime_UTR
AGCTTTGGAGTATGATGTTC+CGG 0.315647 4_3:-59191373 None:intergenic
AATGAACCTGGAGGAAGTTT+AGG 0.317092 4_3:-59190362 None:intergenic
CCAAATGGCATAAAAGTATT+GGG 0.318496 4_3:-59192598 None:intergenic
ATATTTAAGACACACATATT+AGG 0.320706 4_3:+59190582 Msa0651720:CDS
ATCATCTAGTAACCAAATTT+AGG 0.324641 4_3:+59192683 Msa0651720:CDS
CTACAGCTAGTGTTCTTACT+TGG 0.327558 4_3:+59191724 Msa0651720:CDS
CCTCTCTGTCTTTGGTAACT+TGG 0.334282 4_3:+59191272 Msa0651720:CDS
ATGTTCCGGGTATCTTATTT+GGG 0.340127 4_3:-59191359 None:intergenic
CATGCAAGTGTAGCAACTTT+GGG 0.340727 4_3:-59190240 None:intergenic
AGCAACTTTGGGGTAGTTGC+AGG 0.343546 4_3:-59190229 None:intergenic
TAAACTTCCTCCAGGTTCAT+TGG 0.346471 4_3:+59190364 Msa0651720:CDS
AAGGTCTACCCACAAGATTT+TGG 0.363059 4_3:+59192876 Msa0651720:CDS
AATTTGGCTAGCTCATTTCC+TGG 0.372245 4_3:-59192640 None:intergenic
GTCGGGATCCTCTCTGTCTT+TGG 0.372445 4_3:+59191264 Msa0651720:CDS
TCATTGGGTTGGCCTTATAT+AGG 0.376295 4_3:+59190380 Msa0651720:CDS
GGCAGTTCTCTTTCAATGTC+GGG 0.378579 4_3:+59191247 Msa0651720:intron
TTCCTCCAGGTTCATTGGGT+TGG 0.381628 4_3:+59190369 Msa0651720:CDS
GGCATAAAAGTATTGGGCTT+TGG 0.388055 4_3:-59192592 None:intergenic
GGCATTACTTTCCAACCCTT+TGG 0.388434 4_3:-59192351 None:intergenic
TTGAATGAGAAGGATCTATT+AGG 0.391625 4_3:+59191606 Msa0651720:CDS
TAAATTTGGTTACTAGATGA+TGG 0.399270 4_3:-59192681 None:intergenic
ACATGCAAGTGTAGCAACTT+TGG 0.401108 4_3:-59190241 None:intergenic
GCCAAATGGCATAAAAGTAT+TGG 0.401232 4_3:-59192599 None:intergenic
GGTAGACCTTGCTGAGGGAT+TGG 0.409632 4_3:-59192863 None:intergenic
TAGTATACCTCAAATCTTGA+TGG 0.414171 4_3:-59192432 None:intergenic
AAACTTCCTCCAGGTTCATT+GGG 0.414333 4_3:+59190365 Msa0651720:CDS
ATGAGAGAAAGATGAGGAAG+AGG 0.416062 4_3:-59190283 None:intergenic
CATCCTTGTAGTTTAGCAAA+TGG 0.417428 4_3:-59191629 None:intergenic
TTATTGTATTTCTTGATGAA+TGG 0.420921 4_3:-59190320 None:intergenic
TCATTTCCTCACTAGAATCC+TGG 0.422005 4_3:+59190829 Msa0651720:CDS
GCAGCTTACCAAAAGAGCTT+TGG 0.423797 4_3:-59191388 None:intergenic
ACCTGGAGGAAGTTTAGGTT+TGG 0.430894 4_3:-59190357 None:intergenic
AAACTAAATGTGTCATCAAC+TGG 0.435425 4_3:+59193162 Msa0651720:three_prime_UTR
TTTGGCAGGTGGGAGGTAGT+GGG 0.445491 4_3:+59192809 Msa0651720:intron
CATACCTATTCTATTGTAAA+GGG 0.446010 4_3:+59193084 Msa0651720:three_prime_UTR
AATCAAATGAGATCAATGTT+GGG 0.446309 4_3:-59192975 None:intergenic
AAATATGCCACTTACTCATA+AGG 0.449078 4_3:+59191971 Msa0651720:CDS
TTTATCTGACCCCATGTCAA+TGG 0.449977 4_3:-59191948 None:intergenic
TGGAATCTTCCCTCCATCAT+TGG 0.450558 4_3:-59191928 None:intergenic
GTAGACCTTGCTGAGGGATT+GGG 0.450729 4_3:-59192862 None:intergenic
ACATACCTATTCTATTGTAA+AGG 0.451493 4_3:+59193083 Msa0651720:three_prime_UTR
CATATAGGTATGAAGGTACT+AGG 0.455239 4_3:-59193034 None:intergenic
TTCTAAGCATATAGGTATGA+AGG 0.457842 4_3:-59193041 None:intergenic
GGGGTAGTTGCAGGCGTAGA+AGG 0.459916 4_3:-59190220 None:intergenic
GCTTTGGAGTATGATGTTCC+GGG 0.462286 4_3:-59191372 None:intergenic
GGGTCAAAATTATGAGGAGC+AGG 0.462427 4_3:-59192411 None:intergenic
GAATCAAATGAGATCAATGT+TGG 0.463221 4_3:-59192976 None:intergenic
TGGCAGTTCTCTTTCAATGT+CGG 0.465740 4_3:+59191246 Msa0651720:intron
ATATGATGCTTGACATCCTT+AGG 0.466886 4_3:-59192159 None:intergenic
CATTTCCTCACTAGAATCCT+GGG 0.467464 4_3:+59190830 Msa0651720:CDS
TTTGATTCTCCAAAATCTTG+TGG 0.468913 4_3:-59192885 None:intergenic
TGAGATAATTTGCAAGAGAA+AGG 0.471556 4_3:+59191575 Msa0651720:CDS
AACACAAATCTTGCAGCCTC+AGG 0.480772 4_3:-59190630 None:intergenic
CAATTATAGAGAACAGCTTA+AGG 0.481085 4_3:+59191299 Msa0651720:CDS
GAAGTTGCTGATAATGTGAT+TGG 0.485666 4_3:+59191678 Msa0651720:CDS
CCTTGCTGAGGGATTGGGAA+TGG 0.487232 4_3:-59192857 None:intergenic
TACCATACCTTATGAGTAAG+TGG 0.488143 4_3:-59191978 None:intergenic
GATATTTAATACCAAAGGGT+TGG 0.489000 4_3:+59192340 Msa0651720:CDS
TTGATTCTCCAAAATCTTGT+GGG 0.489166 4_3:-59192884 None:intergenic
AGGAAGTTTAGGTTTGGCTA+TGG 0.490163 4_3:-59190351 None:intergenic
CTTGCTGAGGGATTGGGAAT+GGG 0.490233 4_3:-59192856 None:intergenic
CTTGATGGGTCAAAATTATG+AGG 0.491919 4_3:-59192417 None:intergenic
TAGAAGCAAAGAAGATGTTA+GGG 0.494475 4_3:-59190430 None:intergenic
TCAAGGATATTTAATACCAA+AGG 0.499241 4_3:+59192335 Msa0651720:intron
CAAGGATATTTAATACCAAA+GGG 0.500893 4_3:+59192336 Msa0651720:intron
GAGATTACCACACTCGTATC+CGG 0.502340 4_3:+59190739 Msa0651720:CDS
AATGGAGTGCACTCATGTCC+AGG 0.511845 4_3:+59192622 Msa0651720:CDS
TACGAGTGTGGTAATCTCCT+TGG 0.519185 4_3:-59190734 None:intergenic
CATATTACAGGCTGAGCAGA+TGG 0.524207 4_3:+59191893 Msa0651720:intron
GGTAGAATTCTGGATTATGA+TGG 0.525486 4_3:-59192389 None:intergenic
GCCAAACCTAAACTTCCTCC+AGG 0.527470 4_3:+59190356 Msa0651720:CDS
TTTACTACCACTTACATACT+CGG 0.528872 4_3:-59193141 None:intergenic
TGTGGATGAAATATGATTCA+AGG 0.530629 4_3:-59190180 None:intergenic
GCCACCCTTTACAATAGAAT+AGG 0.535094 4_3:-59193088 None:intergenic
TAAGGCCAACCCAATGAACC+TGG 0.538206 4_3:-59190374 None:intergenic
AGGCCATTTGCTAAACTACA+AGG 0.540203 4_3:+59191626 Msa0651720:CDS
GAGTGCACTCCATTGCCAAA+TGG 0.545280 4_3:-59192613 None:intergenic
AGATCAATGTTGGGGTGGCA+AGG 0.558406 4_3:-59192966 None:intergenic
GCAGTATGTGATACCAATGA+TGG 0.565788 4_3:+59191915 Msa0651720:CDS
TGAGGCTGCAAGATTTGTGT+TGG 0.565849 4_3:+59190632 Msa0651720:CDS
ACACACATATAGACCTATGT+TGG 0.566391 4_3:-59193310 None:intergenic
AATTAATCCGAGTATGTAAG+TGG 0.566464 4_3:+59193134 Msa0651720:three_prime_UTR
GAGGGAAGATTCCATTGACA+TGG 0.569287 4_3:+59191937 Msa0651720:CDS
AGGGAAAATGTTAAGTGATG+AGG 0.570322 4_3:+59191656 Msa0651720:CDS
GGAGCAGAGATTGAATGAGA+AGG 0.573774 4_3:+59191596 Msa0651720:CDS
AATTACTGCATAGTAGAGAA+AGG 0.574763 4_3:+59191324 Msa0651720:CDS
AGGTGATATTGGAAAGCCTA+AGG 0.579816 4_3:+59192143 Msa0651720:intron
AGTATACCTCAAATCTTGAT+GGG 0.581207 4_3:-59192431 None:intergenic
CATACTCGGATTAATTGACA+TGG 0.587601 4_3:-59193127 None:intergenic
GGAGAGATGAGAGAAAGATG+AGG 0.587664 4_3:-59190289 None:intergenic
ACCTATTCTATTGTAAAGGG+TGG 0.599372 4_3:+59193087 Msa0651720:three_prime_UTR
TGTGGTTGATGTGGTATACA+AGG 0.599457 4_3:+59192201 Msa0651720:CDS
TCTTGATGAATGGATATGAG+AGG 0.603698 4_3:-59190310 None:intergenic
ATCAAATGAGATCAATGTTG+GGG 0.613062 4_3:-59192974 None:intergenic
AAATGAGATCAATGTTGGGG+TGG 0.614190 4_3:-59192971 None:intergenic
CGAGTTTCCGGATACGAGTG+TGG 0.617194 4_3:-59190746 None:intergenic
GTATGTGATACCAATGATGG+AGG 0.619371 4_3:+59191918 Msa0651720:CDS
ATTCACGTTTAGGGAAGCTG+TGG 0.619792 4_3:+59192183 Msa0651720:CDS
TAGGGAAGCTGTGGTTGATG+TGG 0.623756 4_3:+59192192 Msa0651720:CDS
TCTTTCCCAAATAAGATACC+CGG 0.625072 4_3:+59191354 Msa0651720:CDS
TAAACCAAACTAAACACGAA+CGG 0.625097 4_3:+59190138 None:intergenic
AGGGAAGATTCCATTGACAT+GGG 0.626500 4_3:+59191938 Msa0651720:CDS
TTGTGGGTAGACCTTGCTGA+GGG 0.629302 4_3:-59192868 None:intergenic
GAGGTAGTGGGATATCAAAG+TGG 0.640983 4_3:+59192821 Msa0651720:CDS
ATGCAAGTGTAGCAACTTTG+GGG 0.643483 4_3:-59190239 None:intergenic
ATATTTGTTTGGCAGGTGGG+AGG 0.645744 4_3:+59192802 Msa0651720:intron
TCTGCATTATTCTTTCACCA+AGG 0.653614 4_3:+59190717 Msa0651720:CDS
CTTGTGGGTAGACCTTGCTG+AGG 0.655922 4_3:-59192869 None:intergenic
GGACTTGTTAACATCACACA+TGG 0.656256 4_3:-59190609 None:intergenic
TATGTGATACCAATGATGGA+GGG 0.670681 4_3:+59191919 Msa0651720:CDS
GGTCAAAATTATGAGGAGCA+GGG 0.673511 4_3:-59192410 None:intergenic
CCATTCCCAATCCCTCAGCA+AGG 0.677459 4_3:+59192857 Msa0651720:CDS
TGATGGATGTTTCTGAACAG+TGG 0.679204 4_3:-59192372 None:intergenic
GAAACTGCGAAATCTATGTG+TGG 0.685208 4_3:-59190198 None:intergenic
CCAAGTTACCAAAGACAGAG+AGG 0.687120 4_3:-59191272 None:intergenic
ATTGTCTAAATTAGGCGAGG+CGG 0.689320 4_3:+59191532 Msa0651720:intron
GGGAAGATTCCATTGACATG+GGG 0.697651 4_3:+59191939 Msa0651720:CDS
GGCCAACCCAATGAACCTGG+AGG 0.704247 4_3:-59190371 None:intergenic
TGTGATGTTAACAAGTCCTG+AGG 0.742960 4_3:+59190614 Msa0651720:CDS
GTGGTTGATGTGGTATACAA+GGG 0.754107 4_3:+59192202 Msa0651720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTATATAT+AGG + chr4_3:59191039-59191058 Msa0651720:intron 0.0%
!! AAATAACTTACATATAATTA+AGG - chr4_3:59190480-59190499 None:intergenic 10.0%
!!! TAATTATATGTAAGTTATTT+TGG + chr4_3:59190480-59190499 Msa0651720:intron 10.0%
!!! AATTATATGTAAGTTATTTT+GGG + chr4_3:59190481-59190500 Msa0651720:intron 10.0%
!!! TTTTTTTTTATATATAGGAT+CGG + chr4_3:59191044-59191063 Msa0651720:intron 10.0%
!! AATTTAAATTTACCTAAATT+TGG - chr4_3:59192698-59192717 None:intergenic 10.0%
!! TACGATATATAAACATATAA+AGG + chr4_3:59191073-59191092 Msa0651720:intron 15.0%
!! AATATAACTTGACTAAAAAT+TGG + chr4_3:59191505-59191524 Msa0651720:intron 15.0%
!!! TTAATCTTTTGTACATTTAT+AGG + chr4_3:59192242-59192261 Msa0651720:intron 15.0%
!! ATATATATACATATATGACT+AGG - chr4_3:59192492-59192511 None:intergenic 15.0%
!! TATTTATGCTTATGAATATA+TGG + chr4_3:59192549-59192568 Msa0651720:intron 15.0%
!! ATTGCATTATGAATAAAATA+TGG - chr4_3:59192749-59192768 None:intergenic 15.0%
!!! CATCATAAAATAATTTTCTT+TGG - chr4_3:59192916-59192935 None:intergenic 15.0%
!! TTATTGTATTTCTTGATGAA+TGG - chr4_3:59190323-59190342 None:intergenic 20.0%
!! GGGTTAACTTAATTAATTAT+TGG + chr4_3:59190501-59190520 Msa0651720:intron 20.0%
!! ATATTGATCATAATCAGATA+TGG + chr4_3:59190555-59190574 Msa0651720:intron 20.0%
!!! ATATTTAAGACACACATATT+AGG + chr4_3:59190582-59190601 Msa0651720:CDS 20.0%
!!! AATACATCAACTTTTTTTGA+AGG - chr4_3:59190975-59190994 None:intergenic 20.0%
!! GATGAAATATATTGTCTTAT+TGG + chr4_3:59191116-59191135 Msa0651720:intron 20.0%
!!! TGAATTTTGTTTTCATTTGT+CGG + chr4_3:59191157-59191176 Msa0651720:intron 20.0%
!! TTGGTTAAATTGTCTAAATT+AGG + chr4_3:59191524-59191543 Msa0651720:intron 20.0%
!!! ATATTGATTTTCAACACTAA+GGG - chr4_3:59191842-59191861 None:intergenic 20.0%
!!! AATATTGATTTTCAACACTA+AGG - chr4_3:59191843-59191862 None:intergenic 20.0%
!! TAATAAACTGTACATATTAC+AGG + chr4_3:59191881-59191900 Msa0651720:intron 20.0%
!! TAAAATCAACATGTTCAATT+TGG - chr4_3:59192659-59192678 None:intergenic 20.0%
!!! ATTTAATTTGAAGACTAATC+TGG + chr4_3:59193264-59193283 Msa0651720:three_prime_UTR 20.0%
! TGAAAAGTTTCTCCTATATA+AGG - chr4_3:59190395-59190414 None:intergenic 25.0%
! TCTTTGCTTCTAAACAAAAA+AGG + chr4_3:59190441-59190460 Msa0651720:CDS 25.0%
!! ATCAATTTCTTGATTGATTC+AGG - chr4_3:59190789-59190808 None:intergenic 25.0%
!! TGACTTCATTTTCAATATCA+GGG - chr4_3:59190812-59190831 None:intergenic 25.0%
!! ATGACTTCATTTTCAATATC+AGG - chr4_3:59190813-59190832 None:intergenic 25.0%
!!! AACAAACCTTTTTCATTTCA+TGG - chr4_3:59190884-59190903 None:intergenic 25.0%
!!! TTTTTTATATATAGGATCGG+AGG + chr4_3:59191047-59191066 Msa0651720:intron 25.0%
! GTGACAATAAATTCATGATT+AGG - chr4_3:59191184-59191203 None:intergenic 25.0%
! AATCATGAATTTATTGTCAC+TGG + chr4_3:59191184-59191203 Msa0651720:intron 25.0%
! ATCATGAATTTATTGTCACT+GGG + chr4_3:59191185-59191204 Msa0651720:intron 25.0%
! TAAACTACAAGGATGAAAAA+GGG + chr4_3:59191637-59191656 Msa0651720:CDS 25.0%
!!! GACAAAAACACTTACTTTTA+TGG - chr4_3:59191790-59191809 None:intergenic 25.0%
!! GTAAATAACTTGTATTGTGT+AGG + chr4_3:59192123-59192142 Msa0651720:intron 25.0%
! TCAAGGATATTTAATACCAA+AGG + chr4_3:59192335-59192354 Msa0651720:intron 25.0%
! CAAGGATATTTAATACCAAA+GGG + chr4_3:59192336-59192355 Msa0651720:intron 25.0%
! TATATACATATATGACTAGG+TGG - chr4_3:59192489-59192508 None:intergenic 25.0%
!! CTTATGAATATATGGATTGA+TGG + chr4_3:59192557-59192576 Msa0651720:intron 25.0%
! TAAATTTGGTTACTAGATGA+TGG - chr4_3:59192684-59192703 None:intergenic 25.0%
! ATCATCTAGTAACCAAATTT+AGG + chr4_3:59192683-59192702 Msa0651720:CDS 25.0%
! AATCAAATGAGATCAATGTT+GGG - chr4_3:59192978-59192997 None:intergenic 25.0%
!!! TTCTTTTGTTCTAAGCATAT+AGG - chr4_3:59193052-59193071 None:intergenic 25.0%
! ACATACCTATTCTATTGTAA+AGG + chr4_3:59193083-59193102 Msa0651720:three_prime_UTR 25.0%
! CATACCTATTCTATTGTAAA+GGG + chr4_3:59193084-59193103 Msa0651720:three_prime_UTR 25.0%
TGTGGATGAAATATGATTCA+AGG - chr4_3:59190183-59190202 None:intergenic 30.0%
TAGAAGCAAAGAAGATGTTA+GGG - chr4_3:59190433-59190452 None:intergenic 30.0%
TTAGAAGCAAAGAAGATGTT+AGG - chr4_3:59190434-59190453 None:intergenic 30.0%
!! ATAAGCTTCTCTTTGCTTTT+GGG - chr4_3:59190690-59190709 None:intergenic 30.0%
! AATAAGCTTCTCTTTGCTTT+TGG - chr4_3:59190691-59190710 None:intergenic 30.0%
AAAAGCAAAGAGAAGCTTAT+TGG + chr4_3:59190690-59190709 Msa0651720:CDS 30.0%
TCCTTCATTATTGTTTGGTT+TGG + chr4_3:59191214-59191233 Msa0651720:intron 30.0%
ACCAAACCAAACAATAATGA+AGG - chr4_3:59191218-59191237 None:intergenic 30.0%
!! GTTTGGTTTGGTTTGATTAT+TGG + chr4_3:59191226-59191245 Msa0651720:intron 30.0%
CTTAAGCTGTTCTCTATAAT+TGG - chr4_3:59191301-59191320 None:intergenic 30.0%
CAATTATAGAGAACAGCTTA+AGG + chr4_3:59191299-59191318 Msa0651720:CDS 30.0%
AATTACTGCATAGTAGAGAA+AGG + chr4_3:59191324-59191343 Msa0651720:CDS 30.0%
TAAATTGTCTAAATTAGGCG+AGG + chr4_3:59191529-59191548 Msa0651720:intron 30.0%
! TGAGATAATTTGCAAGAGAA+AGG + chr4_3:59191575-59191594 Msa0651720:CDS 30.0%
TTGAATGAGAAGGATCTATT+AGG + chr4_3:59191606-59191625 Msa0651720:CDS 30.0%
CTAAACTACAAGGATGAAAA+AGG + chr4_3:59191636-59191655 Msa0651720:CDS 30.0%
ATGGATTTCCTATTCCTTAT+TGG + chr4_3:59191816-59191835 Msa0651720:intron 30.0%
! AAATATGCCACTTACTCATA+AGG + chr4_3:59191971-59191990 Msa0651720:CDS 30.0%
TACTATATACTTTGCATGCA+TGG + chr4_3:59192012-59192031 Msa0651720:intron 30.0%
TTGTATTGTGTAGGTGATAT+TGG + chr4_3:59192132-59192151 Msa0651720:intron 30.0%
CATCATATCATTCACGTTTA+GGG + chr4_3:59192174-59192193 Msa0651720:CDS 30.0%
! ACAAGGGTAAGAATTTTAGA+CGG + chr4_3:59192218-59192237 Msa0651720:intron 30.0%
GATATTTAATACCAAAGGGT+TGG + chr4_3:59192340-59192359 Msa0651720:CDS 30.0%
AGTATACCTCAAATCTTGAT+GGG - chr4_3:59192434-59192453 None:intergenic 30.0%
TAGTATACCTCAAATCTTGA+TGG - chr4_3:59192435-59192454 None:intergenic 30.0%
!! CCAAATGGCATAAAAGTATT+GGG - chr4_3:59192601-59192620 None:intergenic 30.0%
GGTTGTGTTCAATATTTGTT+TGG + chr4_3:59192791-59192810 Msa0651720:intron 30.0%
TTGATTCTCCAAAATCTTGT+GGG - chr4_3:59192887-59192906 None:intergenic 30.0%
TTTGATTCTCCAAAATCTTG+TGG - chr4_3:59192888-59192907 None:intergenic 30.0%
ATCAAATGAGATCAATGTTG+GGG - chr4_3:59192977-59192996 None:intergenic 30.0%
GAATCAAATGAGATCAATGT+TGG - chr4_3:59192979-59192998 None:intergenic 30.0%
TTCTAAGCATATAGGTATGA+AGG - chr4_3:59193044-59193063 None:intergenic 30.0%
AATTAATCCGAGTATGTAAG+TGG + chr4_3:59193134-59193153 Msa0651720:three_prime_UTR 30.0%
TTTACTACCACTTACATACT+CGG - chr4_3:59193144-59193163 None:intergenic 30.0%
AAACTAAATGTGTCATCAAC+TGG + chr4_3:59193162-59193181 Msa0651720:three_prime_UTR 30.0%
!!! ATCAACTGGTATTTTGGTTT+TGG + chr4_3:59193176-59193195 Msa0651720:three_prime_UTR 30.0%
TTGCTACACTTGCATGTATA+TGG + chr4_3:59190247-59190266 Msa0651720:exon 35.0%
TCTTGATGAATGGATATGAG+AGG - chr4_3:59190313-59190332 None:intergenic 35.0%
!!! TCTTTGCTTTTGGGATATGT+AGG - chr4_3:59190681-59190700 None:intergenic 35.0%
TCTGCATTATTCTTTCACCA+AGG + chr4_3:59190717-59190736 Msa0651720:CDS 35.0%
! CTAGAATCCTGGGTTTTTAT+TGG + chr4_3:59190840-59190859 Msa0651720:CDS 35.0%
CGCTTTCCATGAAATGAAAA+AGG + chr4_3:59190875-59190894 Msa0651720:CDS 35.0%
CCAAACAATAATGAAGGAGA+AGG - chr4_3:59191212-59191231 None:intergenic 35.0%
CCTTCTCCTTCATTATTGTT+TGG + chr4_3:59191209-59191228 Msa0651720:intron 35.0%
TCTTTCCCAAATAAGATACC+CGG + chr4_3:59191354-59191373 Msa0651720:CDS 35.0%
! ATGTTCCGGGTATCTTATTT+GGG - chr4_3:59191362-59191381 None:intergenic 35.0%
! ATCATACTCCAAAGCTCTTT+TGG + chr4_3:59191380-59191399 Msa0651720:CDS 35.0%
CATCCTTGTAGTTTAGCAAA+TGG - chr4_3:59191632-59191651 None:intergenic 35.0%
AGGGAAAATGTTAAGTGATG+AGG + chr4_3:59191656-59191675 Msa0651720:CDS 35.0%
! GAAGTTGCTGATAATGTGAT+TGG + chr4_3:59191678-59191697 Msa0651720:CDS 35.0%
!! AAGTGTTTTTGTCTCCATCA+TGG + chr4_3:59191797-59191816 Msa0651720:intron 35.0%
AAGGAATAGGAAATCCATGA+TGG - chr4_3:59191814-59191833 None:intergenic 35.0%
! TATGTGATACCAATGATGGA+GGG + chr4_3:59191919-59191938 Msa0651720:CDS 35.0%
TACCATACCTTATGAGTAAG+TGG - chr4_3:59191981-59192000 None:intergenic 35.0%
ATATGATGCTTGACATCCTT+AGG - chr4_3:59192162-59192181 None:intergenic 35.0%
GCATCATATCATTCACGTTT+AGG + chr4_3:59192173-59192192 Msa0651720:CDS 35.0%
GTTCTTTGATGCAACTATCA+AGG + chr4_3:59192318-59192337 Msa0651720:intron 35.0%
GGTAGAATTCTGGATTATGA+TGG - chr4_3:59192392-59192411 None:intergenic 35.0%
! CTTGATGGGTCAAAATTATG+AGG - chr4_3:59192420-59192439 None:intergenic 35.0%
! TTTTGACCCATCAAGATTTG+AGG + chr4_3:59192425-59192444 Msa0651720:CDS 35.0%
ATACATATATGACTAGGTGG+TGG - chr4_3:59192486-59192505 None:intergenic 35.0%
! CCCAATACTTTTATGCCATT+TGG + chr4_3:59192598-59192617 Msa0651720:CDS 35.0%
! GCCAAATGGCATAAAAGTAT+TGG - chr4_3:59192602-59192621 None:intergenic 35.0%
!! ACTTTTATGCCATTTGGCAA+TGG + chr4_3:59192604-59192623 Msa0651720:CDS 35.0%
GTGTTCAATATTTGTTTGGC+AGG + chr4_3:59192795-59192814 Msa0651720:intron 35.0%
TTCAATATTTGTTTGGCAGG+TGG + chr4_3:59192798-59192817 Msa0651720:intron 35.0%
TCAATATTTGTTTGGCAGGT+GGG + chr4_3:59192799-59192818 Msa0651720:intron 35.0%
!! CATATAGGTATGAAGGTACT+AGG - chr4_3:59193037-59193056 None:intergenic 35.0%
ACCTATTCTATTGTAAAGGG+TGG + chr4_3:59193087-59193106 Msa0651720:three_prime_UTR 35.0%
CATACTCGGATTAATTGACA+TGG - chr4_3:59193130-59193149 None:intergenic 35.0%
! TGTGTCATCAACTGGTATTT+TGG + chr4_3:59193170-59193189 Msa0651720:three_prime_UTR 35.0%
GAAACTGCGAAATCTATGTG+TGG - chr4_3:59190201-59190220 None:intergenic 40.0%
ATGCAAGTGTAGCAACTTTG+GGG - chr4_3:59190242-59190261 None:intergenic 40.0%
CATGCAAGTGTAGCAACTTT+GGG - chr4_3:59190243-59190262 None:intergenic 40.0%
ACATGCAAGTGTAGCAACTT+TGG - chr4_3:59190244-59190263 None:intergenic 40.0%
ATGAGAGAAAGATGAGGAAG+AGG - chr4_3:59190286-59190305 None:intergenic 40.0%
! AGGAAGTTTAGGTTTGGCTA+TGG - chr4_3:59190354-59190373 None:intergenic 40.0%
AATGAACCTGGAGGAAGTTT+AGG - chr4_3:59190365-59190384 None:intergenic 40.0%
TAAACTTCCTCCAGGTTCAT+TGG + chr4_3:59190364-59190383 Msa0651720:CDS 40.0%
AAACTTCCTCCAGGTTCATT+GGG + chr4_3:59190365-59190384 Msa0651720:CDS 40.0%
!! TCATTGGGTTGGCCTTATAT+AGG + chr4_3:59190380-59190399 Msa0651720:CDS 40.0%
!! GGACTTGTTAACATCACACA+TGG - chr4_3:59190612-59190631 None:intergenic 40.0%
TGTGATGTTAACAAGTCCTG+AGG + chr4_3:59190614-59190633 Msa0651720:CDS 40.0%
!! GAGAGTTTTGTACGAGTTTC+CGG - chr4_3:59190761-59190780 None:intergenic 40.0%
TCATTTCCTCACTAGAATCC+TGG + chr4_3:59190829-59190848 Msa0651720:CDS 40.0%
CATTTCCTCACTAGAATCCT+GGG + chr4_3:59190830-59190849 Msa0651720:CDS 40.0%
AAAAACCCAGGATTCTAGTG+AGG - chr4_3:59190838-59190857 None:intergenic 40.0%
GACTTGTCCAATAAAAACCC+AGG - chr4_3:59190850-59190869 None:intergenic 40.0%
TGGCAGTTCTCTTTCAATGT+CGG + chr4_3:59191246-59191265 Msa0651720:intron 40.0%
GATGTTCCGGGTATCTTATT+TGG - chr4_3:59191363-59191382 None:intergenic 40.0%
!! AGCTTTGGAGTATGATGTTC+CGG - chr4_3:59191376-59191395 None:intergenic 40.0%
TCGATCACTAACTGCAATTG+CGG + chr4_3:59191459-59191478 Msa0651720:intron 40.0%
ATTGTCTAAATTAGGCGAGG+CGG + chr4_3:59191532-59191551 Msa0651720:intron 40.0%
! AGGCCATTTGCTAAACTACA+AGG + chr4_3:59191626-59191645 Msa0651720:CDS 40.0%
CTACAGCTAGTGTTCTTACT+TGG + chr4_3:59191724-59191743 Msa0651720:CDS 40.0%
TTATGGCGTCAAGAAGTTTC+TGG - chr4_3:59191773-59191792 None:intergenic 40.0%
ACTAAGGGCCAATAAGGAAT+AGG - chr4_3:59191827-59191846 None:intergenic 40.0%
TTCAACACTAAGGGCCAATA+AGG - chr4_3:59191833-59191852 None:intergenic 40.0%
GCAGTATGTGATACCAATGA+TGG + chr4_3:59191915-59191934 Msa0651720:CDS 40.0%
GTATGTGATACCAATGATGG+AGG + chr4_3:59191918-59191937 Msa0651720:CDS 40.0%
AGGGAAGATTCCATTGACAT+GGG + chr4_3:59191938-59191957 Msa0651720:CDS 40.0%
TTTATCTGACCCCATGTCAA+TGG - chr4_3:59191951-59191970 None:intergenic 40.0%
! TGCCACTTACTCATAAGGTA+TGG + chr4_3:59191976-59191995 Msa0651720:intron 40.0%
AGGTGATATTGGAAAGCCTA+AGG + chr4_3:59192143-59192162 Msa0651720:intron 40.0%
! TGTGGTTGATGTGGTATACA+AGG + chr4_3:59192201-59192220 Msa0651720:CDS 40.0%
! GTGGTTGATGTGGTATACAA+GGG + chr4_3:59192202-59192221 Msa0651720:CDS 40.0%
! TGATGGATGTTTCTGAACAG+TGG - chr4_3:59192375-59192394 None:intergenic 40.0%
GGTCAAAATTATGAGGAGCA+GGG - chr4_3:59192413-59192432 None:intergenic 40.0%
!! GGCATAAAAGTATTGGGCTT+TGG - chr4_3:59192595-59192614 None:intergenic 40.0%
! AATTTGGCTAGCTCATTTCC+TGG - chr4_3:59192643-59192662 None:intergenic 40.0%
! TCAAGATCAGAGTGCTCATT+TGG + chr4_3:59192770-59192789 Msa0651720:intron 40.0%
! AAGGTCTACCCACAAGATTT+TGG + chr4_3:59192876-59192895 Msa0651720:CDS 40.0%
AAATGAGATCAATGTTGGGG+TGG - chr4_3:59192974-59192993 None:intergenic 40.0%
GCCACCCTTTACAATAGAAT+AGG - chr4_3:59193091-59193110 None:intergenic 40.0%
GGAGAGATGAGAGAAAGATG+AGG - chr4_3:59190292-59190311 None:intergenic 45.0%
! ACCTGGAGGAAGTTTAGGTT+TGG - chr4_3:59190360-59190379 None:intergenic 45.0%
AACACAAATCTTGCAGCCTC+AGG - chr4_3:59190633-59190652 None:intergenic 45.0%
TGAGGCTGCAAGATTTGTGT+TGG + chr4_3:59190632-59190651 Msa0651720:CDS 45.0%
TACGAGTGTGGTAATCTCCT+TGG - chr4_3:59190737-59190756 None:intergenic 45.0%
GAGATTACCACACTCGTATC+CGG + chr4_3:59190739-59190758 Msa0651720:CDS 45.0%
GGCAGTTCTCTTTCAATGTC+GGG + chr4_3:59191247-59191266 Msa0651720:intron 45.0%
CCAAGTTACCAAAGACAGAG+AGG - chr4_3:59191275-59191294 None:intergenic 45.0%
! CCTCTCTGTCTTTGGTAACT+TGG + chr4_3:59191272-59191291 Msa0651720:CDS 45.0%
!! GCTTTGGAGTATGATGTTCC+GGG - chr4_3:59191375-59191394 None:intergenic 45.0%
GCAGCTTACCAAAAGAGCTT+TGG - chr4_3:59191391-59191410 None:intergenic 45.0%
GGAGCAGAGATTGAATGAGA+AGG + chr4_3:59191596-59191615 Msa0651720:CDS 45.0%
CATATTACAGGCTGAGCAGA+TGG + chr4_3:59191893-59191912 Msa0651720:intron 45.0%
TGGAATCTTCCCTCCATCAT+TGG - chr4_3:59191931-59191950 None:intergenic 45.0%
GAGGGAAGATTCCATTGACA+TGG + chr4_3:59191937-59191956 Msa0651720:CDS 45.0%
GGGAAGATTCCATTGACATG+GGG + chr4_3:59191939-59191958 Msa0651720:CDS 45.0%
ATTCACGTTTAGGGAAGCTG+TGG + chr4_3:59192183-59192202 Msa0651720:CDS 45.0%
GGCATTACTTTCCAACCCTT+TGG - chr4_3:59192354-59192373 None:intergenic 45.0%
GGGTCAAAATTATGAGGAGC+AGG - chr4_3:59192414-59192433 None:intergenic 45.0%
ATATTTGTTTGGCAGGTGGG+AGG + chr4_3:59192802-59192821 Msa0651720:intron 45.0%
!! GAGGTAGTGGGATATCAAAG+TGG + chr4_3:59192821-59192840 Msa0651720:CDS 45.0%
!! GGATTGGGAATGGGCTATAT+TGG - chr4_3:59192850-59192869 None:intergenic 45.0%
!! AGCAACTTTGGGGTAGTTGC+AGG - chr4_3:59190232-59190251 None:intergenic 50.0%
GCCAAACCTAAACTTCCTCC+AGG + chr4_3:59190356-59190375 Msa0651720:CDS 50.0%
TTCCTCCAGGTTCATTGGGT+TGG + chr4_3:59190369-59190388 Msa0651720:CDS 50.0%
TAAGGCCAACCCAATGAACC+TGG - chr4_3:59190377-59190396 None:intergenic 50.0%
! CTGCACTGCAGTGCAACTTT+TGG + chr4_3:59191407-59191426 Msa0651720:intron 50.0%
! TAGGGAAGCTGTGGTTGATG+TGG + chr4_3:59192192-59192211 Msa0651720:CDS 50.0%
TGAGGAGCAGGGTAGAATTC+TGG - chr4_3:59192402-59192421 None:intergenic 50.0%
GAGTGCACTCCATTGCCAAA+TGG - chr4_3:59192616-59192635 None:intergenic 50.0%
AATGGAGTGCACTCATGTCC+AGG + chr4_3:59192622-59192641 Msa0651720:CDS 50.0%
CTTGCTGAGGGATTGGGAAT+GGG - chr4_3:59192859-59192878 None:intergenic 50.0%
GTAGACCTTGCTGAGGGATT+GGG - chr4_3:59192865-59192884 None:intergenic 50.0%
TTGTGGGTAGACCTTGCTGA+GGG - chr4_3:59192871-59192890 None:intergenic 50.0%
AGATCAATGTTGGGGTGGCA+AGG - chr4_3:59192969-59192988 None:intergenic 50.0%
CGAGTTTCCGGATACGAGTG+TGG - chr4_3:59190749-59190768 None:intergenic 55.0%
GTCGGGATCCTCTCTGTCTT+TGG + chr4_3:59191264-59191283 Msa0651720:CDS 55.0%
TTTGGCAGGTGGGAGGTAGT+GGG + chr4_3:59192809-59192828 Msa0651720:intron 55.0%
CCTTGCTGAGGGATTGGGAA+TGG - chr4_3:59192860-59192879 None:intergenic 55.0%
CCATTCCCAATCCCTCAGCA+AGG + chr4_3:59192857-59192876 Msa0651720:CDS 55.0%
GGTAGACCTTGCTGAGGGAT+TGG - chr4_3:59192866-59192885 None:intergenic 55.0%
CTTGTGGGTAGACCTTGCTG+AGG - chr4_3:59192872-59192891 None:intergenic 55.0%
GGGGTAGTTGCAGGCGTAGA+AGG - chr4_3:59190223-59190242 None:intergenic 60.0%
GGCCAACCCAATGAACCTGG+AGG - chr4_3:59190374-59190393 None:intergenic 60.0%
GTTTGGCAGGTGGGAGGTAG+TGG + chr4_3:59192808-59192827 Msa0651720:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59190152 59193317 59190152 ID=Msa0651720;Name=Msa0651720
chr4_3 mRNA 59190152 59193317 59190152 ID=Msa0651720-mRNA-1;Parent=Msa0651720;Name=Msa0651720-mRNA-1;_AED=0.13;_eAED=0.13;_QI=108|1|1|1|0.87|0.77|9|407|471
chr4_3 exon 59190152 59190462 59190152 ID=Msa0651720-mRNA-1:exon:15830;Parent=Msa0651720-mRNA-1
chr4_3 exon 59190572 59190896 59190572 ID=Msa0651720-mRNA-1:exon:15831;Parent=Msa0651720-mRNA-1
chr4_3 exon 59191252 59191401 59191252 ID=Msa0651720-mRNA-1:exon:15832;Parent=Msa0651720-mRNA-1
chr4_3 exon 59191546 59191794 59191546 ID=Msa0651720-mRNA-1:exon:15833;Parent=Msa0651720-mRNA-1
chr4_3 exon 59191903 59191992 59191903 ID=Msa0651720-mRNA-1:exon:15834;Parent=Msa0651720-mRNA-1
chr4_3 exon 59192145 59192223 59192145 ID=Msa0651720-mRNA-1:exon:15835;Parent=Msa0651720-mRNA-1
chr4_3 exon 59192340 59192446 59192340 ID=Msa0651720-mRNA-1:exon:15836;Parent=Msa0651720-mRNA-1
chr4_3 exon 59192586 59192704 59192586 ID=Msa0651720-mRNA-1:exon:15837;Parent=Msa0651720-mRNA-1
chr4_3 exon 59192817 59193317 59192817 ID=Msa0651720-mRNA-1:exon:15838;Parent=Msa0651720-mRNA-1
chr4_3 five_prime_UTR 59190152 59190259 59190152 ID=Msa0651720-mRNA-1:five_prime_utr;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59190260 59190462 59190260 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59190572 59190896 59190572 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59191252 59191401 59191252 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59191546 59191794 59191546 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59191903 59191992 59191903 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59192145 59192223 59192145 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59192340 59192446 59192340 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59192586 59192704 59192586 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 CDS 59192817 59192910 59192817 ID=Msa0651720-mRNA-1:cds;Parent=Msa0651720-mRNA-1
chr4_3 three_prime_UTR 59192911 59193317 59192911 ID=Msa0651720-mRNA-1:three_prime_utr;Parent=Msa0651720-mRNA-1
Gene Sequence

>Msa0651720

ATGTATATGGACATTATTATTATCCTCTTCCTCATCTTTCTCTCATCTCTCCTCTCATATCCATTCATCAAGAAATACAATAAACACGAAACCATAGCCAAACCTAAACTTCCTCCAGGTTCATTGGGTTGGCCTTATATAGGAGAAACTTTTCAACTCTACTCTCAACACCCTAACATCTTCTTTGCTTCTAAACAAAAAAGATATGGAGAAATATTTAAGACACACATATTAGGATGTCCATGTGTGATGTTAACAAGTCCTGAGGCTGCAAGATTTGTGTTGGTGACTCATTCTCATTTGTTTAAGCCTACATATCCCAAAAGCAAAGAGAAGCTTATTGGTTCTTCTGCATTATTCTTTCACCAAGGAGATTACCACACTCGTATCCGGAAACTCGTACAAAACTCTCTTGCTCCTGAATCAATCAAGAAATTGATCCCTGATATTGAAAATGAAGTCATTTCCTCACTAGAATCCTGGGTTTTTATTGGACAAGTCATCAACGCTTTCCATGAAATGAAAAAGTTCTCTTTCAATGTCGGGATCCTCTCTGTCTTTGGTAACTTGGAAGCCAATTATAGAGAACAGCTTAAGGAGAATTACTGCATAGTAGAGAAAGGTTACAATTCTTTCCCAAATAAGATACCCGGAACATCATACTCCAAAGCTCTTTTGGCGAGGCGGCGAATTCAAGAGATTATAAGTGAGATAATTTGCAAGAGAAAGGAGCAGAGATTGAATGAGAAGGATCTATTAGGCCATTTGCTAAACTACAAGGATGAAAAAGGGAAAATGTTAAGTGATGAGGAAGTTGCTGATAATGTGATTGGAGTACTATTTGCAGCTCAAGATACTACAGCTAGTGTTCTTACTTGGATTCTCAAGTATCTTCATGATGACCAGAAACTTCTTGACGCCATAAAAGCTGAGCAGATGGCAGTATGTGATACCAATGATGGAGGGAAGATTCCATTGACATGGGGTCAGATAAAAAATATGCCACTTACTCATAAGGTGATATTGGAAAGCCTAAGGATGTCAAGCATCATATCATTCACGTTTAGGGAAGCTGTGGTTGATGTGGTATACAAGGGATATTTAATACCAAAGGGTTGGAAAGTAATGCCACTGTTCAGAAACATCCATCATAATCCAGAATTCTACCCTGCTCCTCATAATTTTGACCCATCAAGATTTGAGTTTGCTCCAAAGCCCAATACTTTTATGCCATTTGGCAATGGAGTGCACTCATGTCCAGGAAATGAGCTAGCCAAATTGAACATGTTGATTTTAATCCATCATCTAGTAACCAAATTTAGGTGGGAGGTAGTGGGATATCAAAGTGGAATCCAATATAGCCCATTCCCAATCCCTCAGCAAGGTCTACCCACAAGATTTTGGAGAATCAAATAG

Protein sequence

>Msa0651720

MYMDIIIILFLIFLSSLLSYPFIKKYNKHETIAKPKLPPGSLGWPYIGETFQLYSQHPNIFFASKQKRYGEIFKTHILGCPCVMLTSPEAARFVLVTHSHLFKPTYPKSKEKLIGSSALFFHQGDYHTRIRKLVQNSLAPESIKKLIPDIENEVISSLESWVFIGQVINAFHEMKKFSFNVGILSVFGNLEANYREQLKENYCIVEKGYNSFPNKIPGTSYSKALLARRRIQEIISEIICKRKEQRLNEKDLLGHLLNYKDEKGKMLSDEEVADNVIGVLFAAQDTTASVLTWILKYLHDDQKLLDAIKAEQMAVCDTNDGGKIPLTWGQIKNMPLTHKVILESLRMSSIISFTFREAVVDVVYKGYLIPKGWKVMPLFRNIHHNPEFYPAPHNFDPSRFEFAPKPNTFMPFGNGVHSCPGNELAKLNMLILIHHLVTKFRWEVVGYQSGIQYSPFPIPQQGLPTRFWRIK*