AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530220 MtrunA17_Chr1g0206481 37.288 236 148 0 1 236 51 286 1.24e-55 182
Msa0530220 MtrunA17_Chr2g0278111 33.333 234 156 0 3 236 53 286 2.53e-52 174
Msa0530220 MtrunA17_Chr5g0411141 33.333 234 156 0 3 236 54 287 2.72e-52 174
Msa0530220 MtrunA17_Chr3g0096071 36.893 206 127 1 82 287 21 223 2.39e-44 150
Msa0530220 MtrunA17_Chr5g0423441 32.447 188 127 0 2 189 52 239 1.12e-41 144
Msa0530220 MtrunA17_Chr2g0280031 31.980 197 125 1 2 189 33 229 9.20e-39 137
Msa0530220 MtrunA17_Chr1g0158831 34.228 149 98 0 88 236 1 149 2.91e-31 115
Msa0530220 MtrunA17_Chr5g0421841 28.302 159 113 1 3 161 53 210 1.09e-27 106
Msa0530220 MtrunA17_Chr1g0167871 29.057 265 176 6 20 277 271 530 6.10e-27 110
Msa0530220 MtrunA17_Chr6g0469931 29.798 198 130 6 3 194 49 243 9.47e-17 80.5
Msa0530220 MtrunA17_Chr4g0044661 25.877 228 153 9 25 241 78 300 1.43e-16 79.7
Msa0530220 MtrunA17_Chr2g0304851 25.547 274 172 10 13 276 62 313 8.79e-16 77.0
Msa0530220 MtrunA17_Chr3g0112231 29.286 140 90 1 141 280 5 135 2.21e-15 73.6
Msa0530220 MtrunA17_Chr1g0193821 28.090 178 95 5 18 191 8 156 4.02e-14 70.9
Msa0530220 MtrunA17_Chr4g0010241 29.861 144 93 4 3 142 72 211 1.31e-12 65.9
Msa0530220 MtrunA17_Chr5g0421741 31.765 85 58 0 3 87 53 137 4.79e-12 63.5
Msa0530220 MtrunA17_Chr1g0148711 31.765 85 58 0 3 87 53 137 4.79e-12 63.5
Msa0530220 MtrunA17_Chr7g0231491 30.070 143 94 3 20 159 100 239 5.92e-12 64.7
Msa0530220 MtrunA17_Chr4g0061491 21.603 287 212 7 2 278 219 502 9.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530220 AT2G05642.1 27.796 313 155 6 3 285 53 324 2.38e-25 105
Msa0530220 AT1G52950.1 28.889 270 181 5 2 266 51 314 8.15e-25 104
Msa0530220 AT5G08020.1 22.300 287 210 6 2 278 205 488 2.14e-14 73.9

Find 44 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATTTCCTTTATTAAAT+TGG 0.099013 4_1:+4267062 None:intergenic
ATACAATCATTTGTACTTTA+TGG 0.110988 4_1:-4266598 Msa0530220:CDS
ACAAAATTTCAGGACATTAT+TGG 0.181251 4_1:-4266944 Msa0530220:CDS
GTTCAACTTCACAAAATTTC+AGG 0.225045 4_1:-4266954 Msa0530220:CDS
ATTAAGGATGTTCAAGTAAA+AGG 0.247812 4_1:-4266766 Msa0530220:CDS
TACAATCATTTGTACTTTAT+GGG 0.285271 4_1:-4266597 Msa0530220:CDS
AACGTAGCACAACTTCTTAT+TGG 0.306159 4_1:+4265890 None:intergenic
TTCTTGGTCCAATTTAATAA+AGG 0.346267 4_1:-4267070 Msa0530220:CDS
GTGAAGTTGAACAAATTTGC+AGG 0.350257 4_1:+4266965 None:intergenic
ATATACTATAGAAAAGTTCT+TGG 0.358286 4_1:-4267086 Msa0530220:CDS
TAGTGCATACCCTTTCTTGT+AGG 0.385922 4_1:+4266306 None:intergenic
AGATATTACACAAGCTAAAC+AGG 0.386066 4_1:-4266084 Msa0530220:intron
AGCTTGTATTTGTGATTTGT+TGG 0.388719 4_1:+4267037 None:intergenic
CATTAGTCGATGCTACAAAA+AGG 0.392945 4_1:-4265800 Msa0530220:intron
CTATCATCTGGGTGACCCCT+TGG 0.394855 4_1:+4266165 None:intergenic
GTGCAACATTCTTCAATGTT+GGG 0.410508 4_1:+4266328 None:intergenic
AATAGCTATATGAGCACAAA+TGG 0.412300 4_1:-4266554 Msa0530220:CDS
AGATGCATAACAACTACAAT+AGG 0.426406 4_1:+4266521 None:intergenic
TACTGATAACGATGTTTCAA+TGG 0.429892 4_1:-4266918 Msa0530220:CDS
GTGAAGATTGTGCTATCATC+TGG 0.430966 4_1:+4266153 None:intergenic
TATCATCTGGGTGACCCCTT+GGG 0.434353 4_1:+4266166 None:intergenic
GGTTGGAACGACTGACATTA+AGG 0.435235 4_1:-4266782 Msa0530220:CDS
AGCAAGGATTTCAAACAACT+TGG 0.460935 4_1:-4267133 Msa0530220:CDS
AAAGCATCAACAACTTTCTC+AGG 0.462814 4_1:+4263809 None:intergenic
GGTGCAACATTCTTCAATGT+TGG 0.472054 4_1:+4266327 None:intergenic
GAATGTTGCACCTACAAGAA+AGG 0.481818 4_1:-4266316 Msa0530220:CDS
GGTGGGTGCATGTGTTGTCT+TGG 0.494354 4_1:-4265934 Msa0530220:CDS
CTTGGTATCATTGAATGCAT+TGG 0.496907 4_1:+4266363 None:intergenic
ACTGATAACGATGTTTCAAT+GGG 0.510519 4_1:-4266917 Msa0530220:intron
AATGTTGCACCTACAAGAAA+GGG 0.527520 4_1:-4266315 Msa0530220:intron
ACAAGCTTCTATTAAAAGCA+AGG 0.530001 4_1:-4267149 Msa0530220:CDS
GTTGGGATTTATAAGCAACT+TGG 0.533952 4_1:+4266345 None:intergenic
AAATTTCAGGACATTATTGG+TGG 0.541189 4_1:-4266941 Msa0530220:CDS
ACAATCATTTGTACTTTATG+GGG 0.544089 4_1:-4266596 Msa0530220:CDS
GATGTCATTGGCCATGTGGT+TGG 0.546261 4_1:-4266799 Msa0530220:CDS
ATGTGATAAGTGTTTCAAGA+AGG 0.547206 4_1:-4265865 Msa0530220:CDS
GGCAATGCATCTTTGACCCA+AGG 0.551722 4_1:-4266182 Msa0530220:CDS
ACTTGGAGATTCTATTGAAG+AGG 0.556514 4_1:-4267116 Msa0530220:CDS
GCAATGCATCTTTGACCCAA+GGG 0.577157 4_1:-4266181 Msa0530220:CDS
CTTGGAGATTCTATTGAAGA+GGG 0.586956 4_1:-4267115 Msa0530220:CDS
TGTCAGTCGTTCCAACCACA+TGG 0.617447 4_1:+4266788 None:intergenic
TTTAGATGTCATTGGCCATG+TGG 0.624994 4_1:-4266803 Msa0530220:intron
TGAAGATTGTGCTATCATCT+GGG 0.667085 4_1:+4266154 None:intergenic
CAATGCATCTTTGACCCAAG+GGG 0.671098 4_1:-4266180 Msa0530220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTCCTTTATTAAAT+TGG + chr4_1:4263894-4263913 None:intergenic 10.0%
!!! AAAATTATTTTGTAAATTTC+AGG - chr4_1:4264328-4264347 Msa0530220:intron 10.0%
!!! TAATTAGATTATCTTTTTAA+AGG - chr4_1:4264479-4264498 Msa0530220:intron 10.0%
!! ATTATTAAAACAATAAACAT+TGG - chr4_1:4265593-4265612 Msa0530220:intron 10.0%
!!! AATTTTATCATAAGATGTTT+TGG + chr4_1:4263968-4263987 None:intergenic 15.0%
!!! ATATATTACTTAATACCTTT+TGG - chr4_1:4264536-4264555 Msa0530220:intron 15.0%
!! AAAATTAAAACACAAAGATA+TGG + chr4_1:4264961-4264980 None:intergenic 15.0%
!! AATAAATTTAATAACTATGC+AGG - chr4_1:4264998-4265017 Msa0530220:intron 15.0%
!!! GTAAACAATTTTTTTTGAAA+GGG + chr4_1:4265637-4265656 None:intergenic 15.0%
!!! AGTAAACAATTTTTTTTGAA+AGG + chr4_1:4265638-4265657 None:intergenic 15.0%
!!! AAATTACTTCAAGTTTTTAT+TGG - chr4_1:4266247-4266266 Msa0530220:intron 15.0%
!!! AGTTTTTATTGGTTTTATTT+TGG - chr4_1:4266258-4266277 Msa0530220:intron 15.0%
!! ATATACTATAGAAAAGTTCT+TGG - chr4_1:4263867-4263886 Msa0530220:intron 20.0%
!! ATGACATCTAAAAATAAACA+TGG + chr4_1:4264142-4264161 None:intergenic 20.0%
!!! TGTTTATTTTTAGATGTCAT+TGG - chr4_1:4264142-4264161 Msa0530220:intron 20.0%
!! ATACAATCATTTGTACTTTA+TGG - chr4_1:4264355-4264374 Msa0530220:intron 20.0%
!! TACAATCATTTGTACTTTAT+GGG - chr4_1:4264356-4264375 Msa0530220:intron 20.0%
!! TATTAAAATGATACACCAAA+AGG + chr4_1:4264554-4264573 None:intergenic 20.0%
!!! TTTTGGTGTATCATTTTAAT+AGG - chr4_1:4264553-4264572 Msa0530220:intron 20.0%
!! AATATATGTGTAATAACGAT+AGG + chr4_1:4264674-4264693 None:intergenic 20.0%
!!! TCTTATATTTTACGATAGAA+TGG - chr4_1:4264743-4264762 Msa0530220:intron 20.0%
!!! AAATTGTCATGTTTTTTGTT+TGG + chr4_1:4264848-4264867 None:intergenic 20.0%
!! ACTCAATTATTCTTTCTATT+CGG - chr4_1:4265229-4265248 Msa0530220:intron 20.0%
!! AAAGATTCAATAACCTTATA+AGG + chr4_1:4265392-4265411 None:intergenic 20.0%
!!! GTATATTCACTTTTCATTTT+AGG - chr4_1:4265415-4265434 Msa0530220:intron 20.0%
!! ATCAAAAAAATGTTGAACAA+AGG - chr4_1:4265752-4265771 Msa0530220:intron 20.0%
!! CGAATAGACAAATAAAAATA+AGG + chr4_1:4266208-4266227 None:intergenic 20.0%
!!! AAGCATTACACTTTAAAATT+TGG - chr4_1:4266556-4266575 Msa0530220:CDS 20.0%
!!! ATTACACTTTAAAATTTGGA+TGG - chr4_1:4266560-4266579 Msa0530220:CDS 20.0%
! TTCTTGGTCCAATTTAATAA+AGG - chr4_1:4263883-4263902 Msa0530220:intron 25.0%
! ACAAAATTTCAGGACATTAT+TGG - chr4_1:4264009-4264028 Msa0530220:intron 25.0%
! ATTAAGGATGTTCAAGTAAA+AGG - chr4_1:4264187-4264206 Msa0530220:intron 25.0%
! AGGAAAAATGACTAAAATCT+TGG - chr4_1:4264207-4264226 Msa0530220:intron 25.0%
! ACAATCATTTGTACTTTATG+GGG - chr4_1:4264357-4264376 Msa0530220:intron 25.0%
! AAATTTAATAACTATGCAGG+TGG - chr4_1:4265001-4265020 Msa0530220:intron 25.0%
! AATTTAATAACTATGCAGGT+GGG - chr4_1:4265002-4265021 Msa0530220:intron 25.0%
!!! CACTTTTCATTTTAGGTTTA+TGG - chr4_1:4265422-4265441 Msa0530220:intron 25.0%
! TACTAATCCAAATCAAAAAC+AGG - chr4_1:4265654-4265673 Msa0530220:intron 25.0%
! ATCAATGATTTCATTGTCAT+CGG + chr4_1:4265806-4265825 None:intergenic 25.0%
! TTAATGTTATCATCAGTTTG+GGG + chr4_1:4265919-4265938 None:intergenic 25.0%
! CTTAATGTTATCATCAGTTT+GGG + chr4_1:4265920-4265939 None:intergenic 25.0%
! TTATTATTCATGTAGCTTCT+TGG - chr4_1:4266013-4266032 Msa0530220:intron 25.0%
! AAAGTTGTCAAAATTAAGCA+AGG - chr4_1:4266163-4266182 Msa0530220:CDS 25.0%
! TTAATACTATGTAGGCTAAT+AGG - chr4_1:4266382-4266401 Msa0530220:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr4_1:4266611-4266630 None:intergenic 25.0%
! TAACTATCATAAGTACTTGT+GGG - chr4_1:4266637-4266656 Msa0530220:intron 25.0%
! AATAAGCAAAAAACAGCATA+TGG + chr4_1:4266702-4266721 None:intergenic 25.0%
! TTATAATCTATCAGAGTTTG+TGG + chr4_1:4266726-4266745 None:intergenic 25.0%
!! AATTTAAGCTTGATGTTTTG+AGG + chr4_1:4266988-4267007 None:intergenic 25.0%
! ATCAAGCTTAAATTGATAGA+AGG - chr4_1:4266994-4267013 Msa0530220:CDS 25.0%
!!! TAACCTTTGTATTTTTGAAC+AGG - chr4_1:4267121-4267140 Msa0530220:CDS 25.0%
ACAAGCTTCTATTAAAAGCA+AGG - chr4_1:4263804-4263823 Msa0530220:CDS 30.0%
! AGCTTGTATTTGTGATTTGT+TGG + chr4_1:4263919-4263938 None:intergenic 30.0%
GTTCAACTTCACAAAATTTC+AGG - chr4_1:4263999-4264018 Msa0530220:intron 30.0%
AAATTTCAGGACATTATTGG+TGG - chr4_1:4264012-4264031 Msa0530220:intron 30.0%
! TACTGATAACGATGTTTCAA+TGG - chr4_1:4264035-4264054 Msa0530220:intron 30.0%
! ACTGATAACGATGTTTCAAT+GGG - chr4_1:4264036-4264055 Msa0530220:intron 30.0%
AAAAAAACTCCACTAACTCA+AGG + chr4_1:4264249-4264268 None:intergenic 30.0%
AATAGCTATATGAGCACAAA+TGG - chr4_1:4264399-4264418 Msa0530220:intron 30.0%
AGATGCATAACAACTACAAT+AGG + chr4_1:4264435-4264454 None:intergenic 30.0%
!!! CTATGTCGACTTAAAGTTTT+TGG - chr4_1:4264453-4264472 Msa0530220:intron 30.0%
! TTTTACGATAGAATGGAAAC+TGG - chr4_1:4264750-4264769 Msa0530220:intron 30.0%
AGATATTACACAAGCTAAAC+AGG - chr4_1:4264869-4264888 Msa0530220:intron 30.0%
ATGTGATAAGTGTTTCAAGA+AGG - chr4_1:4265088-4265107 Msa0530220:intron 30.0%
!!! CAAAAGTGTTTTGTACAAAC+AGG + chr4_1:4265119-4265138 None:intergenic 30.0%
CAAAAGAATAAAAGTGGTGA+TGG + chr4_1:4265343-4265362 None:intergenic 30.0%
!! CATCACCACTTTTATTCTTT+TGG - chr4_1:4265341-4265360 Msa0530220:intron 30.0%
AGTGACCAAAAGAATAAAAG+TGG + chr4_1:4265349-4265368 None:intergenic 30.0%
!!! CTTTTGGTCACTGATTTTTT+TGG - chr4_1:4265357-4265376 Msa0530220:intron 30.0%
TTGGTTAGTGATTCCTTATA+AGG - chr4_1:4265376-4265395 Msa0530220:intron 30.0%
ATTCATGTTATGGATGATAG+TGG - chr4_1:4265450-4265469 Msa0530220:intron 30.0%
TTCATGTTATGGATGATAGT+GGG - chr4_1:4265451-4265470 Msa0530220:intron 30.0%
AACTCTATCAAACAACACAA+AGG + chr4_1:4265484-4265503 None:intergenic 30.0%
!! GAGTTATTTCACAACACTTT+TGG - chr4_1:4265499-4265518 Msa0530220:intron 30.0%
AAAGACTGCAAAAGAACAAA+TGG - chr4_1:4265522-4265541 Msa0530220:intron 30.0%
!!! GTCTTTTCCTGTTTTTGATT+TGG + chr4_1:4265664-4265683 None:intergenic 30.0%
! TAAGGAAATGCTTTTCAAAC+TGG - chr4_1:4265723-4265742 Msa0530220:intron 30.0%
! GATGATGATGTTGATATCAT+AGG - chr4_1:4265883-4265902 Msa0530220:CDS 30.0%
CCTTAATGTTATCATCAGTT+TGG + chr4_1:4265921-4265940 None:intergenic 30.0%
CCAAACTGATGATAACATTA+AGG - chr4_1:4265918-4265937 Msa0530220:CDS 30.0%
AATATATGTTGCATCTGAGT+CGG + chr4_1:4266101-4266120 None:intergenic 30.0%
CTAACTATCATAAGTACTTG+TGG - chr4_1:4266636-4266655 Msa0530220:intron 30.0%
! CTAAGTGTTTTATCCAAAGA+AGG - chr4_1:4266833-4266852 Msa0530220:intron 30.0%
TTATTCTACTATGCCTTCTT+TGG + chr4_1:4266849-4266868 None:intergenic 30.0%
! AAAGAAGGCATAGTAGAATA+AGG - chr4_1:4266848-4266867 Msa0530220:intron 30.0%
!! TTGTTCTTGTTGTTGTAGAT+GGG - chr4_1:4266882-4266901 Msa0530220:intron 30.0%
AGCAAGGATTTCAAACAACT+TGG - chr4_1:4263820-4263839 Msa0530220:intron 35.0%
ACTTGGAGATTCTATTGAAG+AGG - chr4_1:4263837-4263856 Msa0530220:intron 35.0%
CTTGGAGATTCTATTGAAGA+GGG - chr4_1:4263838-4263857 Msa0530220:intron 35.0%
GTGAAGTTGAACAAATTTGC+AGG + chr4_1:4263991-4264010 None:intergenic 35.0%
!!! TGTCGACTTAAAGTTTTTGG+TGG - chr4_1:4264456-4264475 Msa0530220:intron 35.0%
CTTGGTATCATTGAATGCAT+TGG + chr4_1:4264593-4264612 None:intergenic 35.0%
GTTGGGATTTATAAGCAACT+TGG + chr4_1:4264611-4264630 None:intergenic 35.0%
GTGCAACATTCTTCAATGTT+GGG + chr4_1:4264628-4264647 None:intergenic 35.0%
AATGTTGCACCTACAAGAAA+GGG - chr4_1:4264638-4264657 Msa0530220:intron 35.0%
TGAAGATTGTGCTATCATCT+GGG + chr4_1:4264802-4264821 None:intergenic 35.0%
AACGTAGCACAACTTCTTAT+TGG + chr4_1:4265066-4265085 None:intergenic 35.0%
CATTAGTCGATGCTACAAAA+AGG - chr4_1:4265153-4265172 Msa0530220:intron 35.0%
TATGGTGCACATTCATGTTA+TGG - chr4_1:4265440-4265459 Msa0530220:intron 35.0%
AAGCATTTCCTTATCACGTA+AGG + chr4_1:4265716-4265735 None:intergenic 35.0%
TCATCATCTTCCTTACCATT+CGG + chr4_1:4265871-4265890 None:intergenic 35.0%
TTGGATGGATGAGTATCTTT+AGG + chr4_1:4266058-4266077 None:intergenic 35.0%
GTTTCTCTTTCTCAAAGACT+TGG + chr4_1:4266077-4266096 None:intergenic 35.0%
! TTGACGTTGATTGTCAAACT+CGG - chr4_1:4266119-4266138 Msa0530220:CDS 35.0%
! TAAGGTGTCAAACAATCTTG+AGG + chr4_1:4266190-4266209 None:intergenic 35.0%
AGCAAAGGCTTATCGTATAA+GGG + chr4_1:4266800-4266819 None:intergenic 35.0%
TAGCAAAGGCTTATCGTATA+AGG + chr4_1:4266801-4266820 None:intergenic 35.0%
AGTTGAGCAGTTTATAGCAA+AGG + chr4_1:4266815-4266834 None:intergenic 35.0%
!! CTTGTTCTTGTTGTTGTAGA+TGG - chr4_1:4266881-4266900 Msa0530220:intron 35.0%
CTTAAATTGATAGAAGGAGC+TGG - chr4_1:4267000-4267019 Msa0530220:CDS 35.0%
AGGCCTGTTCAAAAATACAA+AGG + chr4_1:4267127-4267146 None:intergenic 35.0%
! AAAGCATCAACAACTTTCTC+AGG + chr4_1:4267147-4267166 None:intergenic 35.0%
TTTAGATGTCATTGGCCATG+TGG - chr4_1:4264150-4264169 Msa0530220:intron 40.0%
GGTGCAACATTCTTCAATGT+TGG + chr4_1:4264629-4264648 None:intergenic 40.0%
GAATGTTGCACCTACAAGAA+AGG - chr4_1:4264637-4264656 Msa0530220:intron 40.0%
TAGTGCATACCCTTTCTTGT+AGG + chr4_1:4264650-4264669 None:intergenic 40.0%
GTGAAGATTGTGCTATCATC+TGG + chr4_1:4264803-4264822 None:intergenic 40.0%
CTCGGTTGGATAATCATTTG+TGG + chr4_1:4265686-4265705 None:intergenic 40.0%
! ATCACGTAAGGTGTCAAACT+CGG + chr4_1:4265704-4265723 None:intergenic 40.0%
GTTTGACACCTTACGTGATA+AGG - chr4_1:4265705-4265724 Msa0530220:intron 40.0%
!! GGACATCTTTTTGACTGCAT+AGG + chr4_1:4265785-4265804 None:intergenic 40.0%
TCATCAGTTTGGGGAGTAAT+AGG + chr4_1:4265910-4265929 None:intergenic 40.0%
CTCTTTCTCAAAGACTTGGA+TGG + chr4_1:4266073-4266092 None:intergenic 40.0%
AACTTTCCGCAATTTAGTGG+TGG + chr4_1:4266149-4266168 None:intergenic 40.0%
GACAACTTTCCGCAATTTAG+TGG + chr4_1:4266152-4266171 None:intergenic 40.0%
CACGGGTCTTAATACTATGT+AGG - chr4_1:4266374-4266393 Msa0530220:CDS 40.0%
AGCCAGTTAAGCTAGAAAGT+CGG + chr4_1:4266501-4266520 None:intergenic 40.0%
ATAAGCCGATAATGCTTGCT+TGG - chr4_1:4266905-4266924 Msa0530220:intron 40.0%
TAAGCCGATAATGCTTGCTT+GGG - chr4_1:4266906-4266925 Msa0530220:intron 40.0%
ATAGCAGAGGAGTTTCAGAA+AGG - chr4_1:4266958-4266977 Msa0530220:CDS 40.0%
GTCATATGCCACAAGAAGAT+TGG - chr4_1:4267022-4267041 Msa0530220:CDS 40.0%
TACTCTCACCAATCTTCTTG+TGG + chr4_1:4267033-4267052 None:intergenic 40.0%
GGTTGGAACGACTGACATTA+AGG - chr4_1:4264171-4264190 Msa0530220:intron 45.0%
GCTTGAAGACCTTGAGTTAG+TGG - chr4_1:4264237-4264256 Msa0530220:intron 45.0%
GCAATGCATCTTTGACCCAA+GGG - chr4_1:4264772-4264791 Msa0530220:intron 45.0%
CAATGCATCTTTGACCCAAG+GGG - chr4_1:4264773-4264792 Msa0530220:intron 45.0%
TCATCTTCCTTACCATTCGG+AGG + chr4_1:4265868-4265887 None:intergenic 45.0%
!! TGCCGACTTTCTAGCTTAAC+TGG - chr4_1:4266496-4266515 Msa0530220:intron 45.0%
ATCCAAACCTAGAGCCTGTT+TGG - chr4_1:4266594-4266613 Msa0530220:CDS 45.0%
!! ATCCAAACAGGCTCTAGGTT+TGG + chr4_1:4266599-4266618 None:intergenic 45.0%
AGTCAATCCAAACAGGCTCT+AGG + chr4_1:4266604-4266623 None:intergenic 45.0%
! GTACTTGTGGGACTGTTTTC+AGG - chr4_1:4266649-4266668 Msa0530220:intron 45.0%
AAGCCGATAATGCTTGCTTG+GGG - chr4_1:4266907-4266926 Msa0530220:intron 45.0%
AACTCCTCTGCTATAGACTG+TGG + chr4_1:4266952-4266971 None:intergenic 45.0%
GATGTCATTGGCCATGTGGT+TGG - chr4_1:4264154-4264173 Msa0530220:intron 50.0%
TGTCAGTCGTTCCAACCACA+TGG + chr4_1:4264168-4264187 None:intergenic 50.0%
GGCAATGCATCTTTGACCCA+AGG - chr4_1:4264771-4264790 Msa0530220:intron 50.0%
TATCATCTGGGTGACCCCTT+GGG + chr4_1:4264790-4264809 None:intergenic 50.0%
! CGTAAGGTGTCAAACTCGGT+TGG + chr4_1:4265700-4265719 None:intergenic 50.0%
GGTCGTCCACCACTAAATTG+CGG - chr4_1:4266140-4266159 Msa0530220:CDS 50.0%
ATTAAGACCCGTGCGATGCA+CGG + chr4_1:4266367-4266386 None:intergenic 50.0%
!! CAGGCTCTAGGTTTGGATAC+TGG + chr4_1:4266592-4266611 None:intergenic 50.0%
AGCCGATAATGCTTGCTTGG+GGG - chr4_1:4266908-4266927 Msa0530220:intron 50.0%
AGCCCCCAAGCAAGCATTAT+CGG + chr4_1:4266913-4266932 None:intergenic 50.0%
CTTGCCACAGTCTATAGCAG+AGG - chr4_1:4266945-4266964 Msa0530220:CDS 50.0%
CTATCATCTGGGTGACCCCT+TGG + chr4_1:4264791-4264810 None:intergenic 55.0%
GGTGGGTGCATGTGTTGTCT+TGG - chr4_1:4265019-4265038 Msa0530220:intron 55.0%
TGTCATGCTGCTCCTCCGAA+TGG - chr4_1:4265853-4265872 Msa0530220:CDS 55.0%
TGCTGCTCCTCCGAATGGTA+AGG - chr4_1:4265858-4265877 Msa0530220:CDS 55.0%
CTAACTTCCCGTGCATCGCA+CGG - chr4_1:4266356-4266375 Msa0530220:CDS 55.0%
TAACTTCCCGTGCATCGCAC+GGG - chr4_1:4266357-4266376 Msa0530220:CDS 55.0%
TTAAGACCCGTGCGATGCAC+GGG + chr4_1:4266366-4266385 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4263793 4267182 4263793 ID=Msa0530220;Name=Msa0530220
chr4_1 mRNA 4263793 4267182 4263793 ID=Msa0530220-mRNA-1;Parent=Msa0530220;Name=Msa0530220-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.33|0.14|0.85|0.83|0.85|7|0|299
chr4_1 exon 4266918 4267182 4266918 ID=Msa0530220-mRNA-1:exon:1279;Parent=Msa0530220-mRNA-1
chr4_1 exon 4266724 4266820 4266724 ID=Msa0530220-mRNA-1:exon:1278;Parent=Msa0530220-mRNA-1
chr4_1 exon 4266498 4266625 4266498 ID=Msa0530220-mRNA-1:exon:1277;Parent=Msa0530220-mRNA-1
chr4_1 exon 4266316 4266400 4266316 ID=Msa0530220-mRNA-1:exon:1276;Parent=Msa0530220-mRNA-1
chr4_1 exon 4266085 4266214 4266085 ID=Msa0530220-mRNA-1:exon:1275;Parent=Msa0530220-mRNA-1
chr4_1 exon 4265801 4265955 4265801 ID=Msa0530220-mRNA-1:exon:1274;Parent=Msa0530220-mRNA-1
chr4_1 exon 4263793 4263832 4263793 ID=Msa0530220-mRNA-1:exon:1273;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4266918 4267182 4266918 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4266724 4266820 4266724 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4266498 4266625 4266498 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4266316 4266400 4266316 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4266085 4266214 4266085 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4265801 4265955 4265801 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
chr4_1 CDS 4263793 4263832 4263793 ID=Msa0530220-mRNA-1:cds;Parent=Msa0530220-mRNA-1
Gene Sequence

>Msa0530220

TTGTCAAAGATACAAGCTTCTATTAAAAGCAAGGATTTCAAACAACTTGGAGATTCTATTGAAGAGGGTGCTTCATATACTATAGAAAAGTTCTTGGTCCAATTTAATAAAGGAAATTTTAAGCCAACAAATCACAAATACAAGCTAACTTTGATAGAAAGCACTATTATAACCAAAACATCTTATGATAAAATTCCTGCAAATTTGTTCAACTTCACAAAATTTCAGGACATTATTGGTGGTACTGATAACGATGTTTCAATGGATGTCATTGGCCATGTGGTTGGAACGACTGACATTAAGGATGTTCAAGTAAAAGGAAAAATGACTAAAATCTTGGACTTGATGCTTGAAGACCTTGAGAGCAATACAATCATTTGTACTTTATGGGGTCATTTTGCTGAACAAATGAATAGCTATATGAGCACAAATGGAAATACTTTTCCTATTGTAGTTGTTATGCATCTATGTCGACTTAAAGTTTTTGGTGGTATGTATGAGATTGCCAATGCATTCAATGATACCAAGTTGCTTATAAATCCCAACATTGAAGAATGTTGCACCTACAAGAAAGGAATGGAAACTGGCAATGCATCTTTGACCCAAGGGGTCACCCAGATGATAGCACAATCTTCACTTTCTTTGTCTAATGATCTACTCCAAACAAAAAACATGACAATTTCAGATATTACACAAGCTAAACAGGTGGGTGCATGTGTTGTCTTGGCTAAAATTATTGACATAGATACCAATAAGAAGTTGTGCTACGTTTCATGTGATAAGTGTTTCAAGAAGGTTGAACCTGTTTGTACAAAACACTTTTGTGAAAAATGTGATACATTAGTCGATGCTACAAAAAGGCCTGAGAAAGTTGTTGATGCTTTGAGAATGTTCTTTTGA

Protein sequence

>Msa0530220

LSKIQASIKSKDFKQLGDSIEEGASYTIEKFLVQFNKGNFKPTNHKYKLTLIESTIITKTSYDKIPANLFNFTKFQDIIGGTDNDVSMDVIGHVVGTTDIKDVQVKGKMTKILDLMLEDLESNTIICTLWGHFAEQMNSYMSTNGNTFPIVVVMHLCRLKVFGGMYEIANAFNDTKLLINPNIEECCTYKKGMETGNASLTQGVTQMIAQSSLSLSNDLLQTKNMTISDITQAKQVGACVVLAKIIDIDTNKKLCYVSCDKCFKKVEPVCTKHFCEKCDTLVDATKRPEKVVDALRMFF*