AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662140 MtrunA17_Chr3g0119841 79.070 172 10 3 3 150 8 177 1.43e-82 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662140 AT1G64680.2 61.379 145 38 2 23 150 18 161 3.95e-56 175
Msa0662140 AT1G64680.1 61.379 145 38 2 23 150 18 161 9.81e-56 176

Find 44 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTCCATTAACAATTAT+TGG 0.181050 4_3:-74051745 Msa0662140:three_prime_UTR
TATCATCCAATAATTGTTAA+TGG 0.198991 4_3:+74051739 None:intergenic
TTTGCTCTTGGAGCATATTT+TGG 0.218844 4_3:+74054667 None:intergenic
GTTATAGAAGTGGAGATAAA+TGG 0.222746 4_3:-74052274 Msa0662140:CDS
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 4_3:-74054511 Msa0662140:CDS
TTATAGAAGTGGAGATAAAT+GGG 0.344984 4_3:-74052273 Msa0662140:CDS
CAGCTACATCTAATAGAAAC+TGG 0.347128 4_3:+74051666 None:intergenic
TCCTCCAGGTGCGCCTGCTC+AGG 0.352565 4_3:-74054357 Msa0662140:intron
TCTGGTGAACCAGCTCCTTT+AGG 0.371810 4_3:-74054604 Msa0662140:CDS
AACTCTGCAACCCATCTTGT+TGG 0.430396 4_3:+74053147 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 4_3:+74054511 None:intergenic
GCAGTAGCACCATTTGCTCT+TGG 0.451258 4_3:+74054655 None:intergenic
TCCACCTGAGCAGGCGCACC+TGG 0.454996 4_3:+74054353 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 4_3:-74053113 Msa0662140:CDS
GCCTTTCTTCCACTGGCTAG+TGG 0.458976 4_3:-74053106 Msa0662140:CDS
CTTCTTTCTATGCTTCCTCC+AGG 0.466971 4_3:-74054371 Msa0662140:CDS
CCTTTCTTCCACTGGCTAGT+GGG 0.469718 4_3:-74053105 Msa0662140:CDS
CAACACATCCACTGTTCTCC+AGG 0.477413 4_3:+74051824 None:intergenic
CCCACTAGCCAGTGGAAGAA+AGG 0.481322 4_3:+74053105 None:intergenic
CATTTGCAGAGCCTGTAATA+GGG 0.488770 4_3:-74054510 Msa0662140:CDS
AAATATGCTCCAAGAGCAAA+TGG 0.490621 4_3:-74054664 Msa0662140:CDS
AATTATTTCCACCAACAAGA+TGG 0.491129 4_3:-74053158 Msa0662140:CDS
ATGATAATATCCACCTGAGC+AGG 0.514693 4_3:+74054344 None:intergenic
ATTATTTCCACCAACAAGAT+GGG 0.515753 4_3:-74053157 Msa0662140:CDS
TCTGCAACCCATCTTGTTGG+TGG 0.541101 4_3:+74053150 None:intergenic
CTGGCTAGTGGGTCCTTCTG+AGG 0.542547 4_3:-74053094 Msa0662140:intron
TAAATGGGGTGAAGCAAAAG+AGG 0.543309 4_3:-74052258 Msa0662140:CDS
TGTGGTATAGCTGAACCATC+TGG 0.549247 4_3:-74054622 Msa0662140:CDS
AAAGGAGCTGGTTCACCAGA+TGG 0.553062 4_3:+74054607 None:intergenic
AGTAACAAAATCACCTCAGA+AGG 0.568318 4_3:+74053081 None:intergenic
GCATATATATACATAAAAGC+TGG 0.570250 4_3:+74051622 None:intergenic
ATGGTGCTACTGCTACCATT+CGG 0.571787 4_3:-74054645 Msa0662140:CDS
TTTGGTGGAGTTATTAGCTG+AGG 0.595601 4_3:+74054685 None:intergenic
ACCTGAGCAGGCGCACCTGG+AGG 0.601220 4_3:+74054356 None:intergenic
CTGGAGAACAGTGGATGTGT+TGG 0.601316 4_3:-74051823 Msa0662140:CDS
TATGTACTAGGTTATAGAAG+TGG 0.602466 4_3:-74052284 Msa0662140:intron
AAATGGGGTGAAGCAAAAGA+GGG 0.627912 4_3:-74052257 Msa0662140:CDS
TATAGAAGTGGAGATAAATG+GGG 0.632566 4_3:-74052272 Msa0662140:CDS
GCAACAGCAAGTTGTTCGTG+AGG 0.632780 4_3:-74054396 Msa0662140:CDS
TTCAGCTATACCACACCGAA+TGG 0.634647 4_3:+74054630 None:intergenic
TTCAGGTACCTGGAGAACAG+TGG 0.643237 4_3:-74051832 Msa0662140:intron
CAGAAGGACCCACTAGCCAG+TGG 0.651518 4_3:+74053097 None:intergenic
AATGGGGTGAAGCAAAAGAG+GGG 0.736860 4_3:-74052256 Msa0662140:CDS
GCTACTGCTACCATTCGGTG+TGG 0.736888 4_3:-74054640 Msa0662140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAGAAGAAGAAAAAAA+AGG - chr4_3:74051809-74051828 Msa0662140:exon 15.0%
!! AAAAAGAAGAAGAAAAAAAA+GGG - chr4_3:74051810-74051829 Msa0662140:exon 15.0%
!!! TGATTATTATTATTTTTGAC+TGG + chr4_3:74052115-74052134 None:intergenic 15.0%
!!! AGTAAAAACGTTTTATATAT+TGG - chr4_3:74053471-74053490 Msa0662140:intron 15.0%
!! TTAAAAATGACTAAAAATCA+AGG + chr4_3:74053665-74053684 None:intergenic 15.0%
!!! TTTCTATTTGAAACTTTATA+AGG - chr4_3:74053862-74053881 Msa0662140:intron 15.0%
!!! TATATTTTTTTTTCTTGTTC+AGG - chr4_3:74054442-74054461 Msa0662140:intron 15.0%
!! AATAATCATGTGCTTAATAA+TGG - chr4_3:74052127-74052146 Msa0662140:intron 20.0%
!! AAAGTATATTCTTTGATCAT+TGG - chr4_3:74052157-74052176 Msa0662140:intron 20.0%
!! TATCTATAAGTTATAACACA+AGG + chr4_3:74052334-74052353 None:intergenic 20.0%
!! CTGTTAAAATATTAATTGTG+AGG + chr4_3:74052649-74052668 None:intergenic 20.0%
!! ACAAAATTGAAAGATATGAA+AGG + chr4_3:74052831-74052850 None:intergenic 20.0%
!!! AATTTTGTTGAATATGTAGT+GGG - chr4_3:74052843-74052862 Msa0662140:intron 20.0%
!! TTTCAAACTAATATAGATAC+AGG + chr4_3:74053034-74053053 None:intergenic 20.0%
!! TAAAAATGACTTTATTCCTT+CGG + chr4_3:74053091-74053110 None:intergenic 20.0%
!! TAAACAAATGCTAAATTGAT+AGG + chr4_3:74053272-74053291 None:intergenic 20.0%
!! GTCATTGATATTTAGATTAT+TGG - chr4_3:74053984-74054003 Msa0662140:intron 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG + chr4_3:74054523-74054542 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG + chr4_3:74054524-74054543 None:intergenic 20.0%
!!! GATTTTTTCACTAATGAATT+TGG - chr4_3:74054525-74054544 Msa0662140:CDS 20.0%
!! TATCATCCAATAATTGTTAA+TGG + chr4_3:74054555-74054574 None:intergenic 20.0%
! GTAAATTTATGCTTCTTTCA+AGG - chr4_3:74052028-74052047 Msa0662140:intron 25.0%
! TATTCAATTATGTACGTGTA+AGG - chr4_3:74052053-74052072 Msa0662140:intron 25.0%
! GAAAACAGCATATAACTTAT+AGG - chr4_3:74052286-74052305 Msa0662140:intron 25.0%
!! CAATTTTGTTGAATATGTAG+TGG - chr4_3:74052842-74052861 Msa0662140:intron 25.0%
!! ATTTTGTTGAATATGTAGTG+GGG - chr4_3:74052844-74052863 Msa0662140:intron 25.0%
! TAATTTCCTAAACTGCAATA+AGG + chr4_3:74053118-74053137 None:intergenic 25.0%
! AGCAATATAAATTACATGGT+TGG + chr4_3:74053248-74053267 None:intergenic 25.0%
! AGGTAGCAATATAAATTACA+TGG + chr4_3:74053252-74053271 None:intergenic 25.0%
!! CGTTTTATATATTGGAAGTT+AGG - chr4_3:74053479-74053498 Msa0662140:intron 25.0%
! CTAAAAATCAAGGAAATCAA+TGG + chr4_3:74053655-74053674 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG + chr4_3:74053722-74053741 None:intergenic 25.0%
! AAAAAATGGCTGAAATATCA+AGG - chr4_3:74053911-74053930 Msa0662140:intron 25.0%
! TTAGATTATTGGTATGTACT+AGG - chr4_3:74053995-74054014 Msa0662140:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG - chr4_3:74054018-74054037 Msa0662140:intron 25.0%
!!! CTATCAGTGACTATTTTTTT+AGG - chr4_3:74054238-74054257 Msa0662140:intron 25.0%
! ATCAACAAAAATTCACAAGA+AGG + chr4_3:74054416-74054435 None:intergenic 25.0%
! GCATATATATACATAAAAGC+TGG + chr4_3:74054672-74054691 None:intergenic 25.0%
!! CAATGACAGTATTTTTGAGA+AGG - chr4_3:74051725-74051744 Msa0662140:three_prime_UTR 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG + chr4_3:74051795-74051814 None:intergenic 30.0%
AGAAGAAGAAAAAAAAGGGT+TGG - chr4_3:74051814-74051833 Msa0662140:CDS 30.0%
!! CTTGCGAACTTGTTATATAT+AGG - chr4_3:74052994-74053013 Msa0662140:intron 30.0%
TAATATAGATACAGGCATGA+GGG + chr4_3:74053026-74053045 None:intergenic 30.0%
ACAATTAATCTTTAGACCGA+AGG - chr4_3:74053072-74053091 Msa0662140:intron 30.0%
TAACTACCTTATTGCAGTTT+AGG - chr4_3:74053109-74053128 Msa0662140:CDS 30.0%
AATTATTTCCACCAACAAGA+TGG - chr4_3:74053133-74053152 Msa0662140:CDS 30.0%
ATTATTTCCACCAACAAGAT+GGG - chr4_3:74053134-74053153 Msa0662140:CDS 30.0%
! GTTTAACTTCATAAGAGCTT+TGG - chr4_3:74053287-74053306 Msa0662140:intron 30.0%
TCAATCCATTTATTTGTCAG+TGG - chr4_3:74053376-74053395 Msa0662140:intron 30.0%
!! TACAAGTATTTTTGCTTTCC+TGG + chr4_3:74053434-74053453 None:intergenic 30.0%
! CATTTTAAACCAAACTTCAG+AGG + chr4_3:74053723-74053742 None:intergenic 30.0%
! GTAACTCAACCTTTTTGAAT+TGG - chr4_3:74053789-74053808 Msa0662140:intron 30.0%
! ATGCCTTTCATTTTACTCAT+GGG - chr4_3:74053813-74053832 Msa0662140:intron 30.0%
TCACGTGTGAAAACAAAAAA+TGG - chr4_3:74053897-74053916 Msa0662140:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG - chr4_3:74054007-74054026 Msa0662140:intron 30.0%
GTTATAGAAGTGGAGATAAA+TGG - chr4_3:74054017-74054036 Msa0662140:intron 30.0%
TATAGAAGTGGAGATAAATG+GGG - chr4_3:74054019-74054038 Msa0662140:intron 30.0%
TCTACCTGCATTTCTTTATA+TGG + chr4_3:74054064-74054083 None:intergenic 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG - chr4_3:74054081-74054100 Msa0662140:intron 30.0%
TCAATGGAGTAATAATCAGA+AGG + chr4_3:74054317-74054336 None:intergenic 30.0%
TCTGATTATTACTCCATTGA+TGG - chr4_3:74054317-74054336 Msa0662140:intron 30.0%
TTAGTGAAAAAATCTTGGGT+AGG + chr4_3:74054519-74054538 None:intergenic 30.0%
GGACTTCCATTAACAATTAT+TGG - chr4_3:74054546-74054565 Msa0662140:CDS 30.0%
! TTTGCTCTTGGAGCATATTT+TGG + chr4_3:74051627-74051646 None:intergenic 35.0%
AAATATGCTCCAAGAGCAAA+TGG - chr4_3:74051627-74051646 Msa0662140:three_prime_UTR 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG + chr4_3:74051705-74051724 None:intergenic 35.0%
! GACTTTGTTTGCACGAAAAA+TGG - chr4_3:74051755-74051774 Msa0662140:three_prime_UTR 35.0%
!! GTTGGTTTATGAGAGTTTTG+TGG - chr4_3:74051832-74051851 Msa0662140:intron 35.0%
! GTCAATTCAGTGTTACTCTT+AGG + chr4_3:74052210-74052229 None:intergenic 35.0%
TGCTAAGCTTACTGTCTATT+TGG + chr4_3:74052422-74052441 None:intergenic 35.0%
CAGTAAGCTTAGCATTTGTT+TGG - chr4_3:74052428-74052447 Msa0662140:intron 35.0%
AGCTTAGCATTTGTTTGGAT+TGG - chr4_3:74052433-74052452 Msa0662140:intron 35.0%
ATTCAGATTCAAGATGCAGA+GGG + chr4_3:74052482-74052501 None:intergenic 35.0%
AATTCAGATTCAAGATGCAG+AGG + chr4_3:74052483-74052502 None:intergenic 35.0%
ATCAAAGTTCCAAACCCTTA+TGG + chr4_3:74052878-74052897 None:intergenic 35.0%
! AAGGGTTTGGAACTTTGATT+TGG - chr4_3:74052879-74052898 Msa0662140:intron 35.0%
! AGGGTTTGGAACTTTGATTT+GGG - chr4_3:74052880-74052899 Msa0662140:intron 35.0%
!! TTTGGAACTTTGATTTGGGA+AGG - chr4_3:74052884-74052903 Msa0662140:intron 35.0%
GGACACTGAGAATATTATGT+AGG + chr4_3:74052938-74052957 None:intergenic 35.0%
CTAATATAGATACAGGCATG+AGG + chr4_3:74053027-74053046 None:intergenic 35.0%
AGTAACAAAATCACCTCAGA+AGG + chr4_3:74053213-74053232 None:intergenic 35.0%
! AACACTTGCAAACTCTTTTC+AGG + chr4_3:74053317-74053336 None:intergenic 35.0%
ATTTACCGCCATTTGAAAAC+CGG + chr4_3:74053408-74053427 None:intergenic 35.0%
!! AAGTATTTTTGCTTTCCTGG+AGG + chr4_3:74053431-74053450 None:intergenic 35.0%
TTGCAGAGCTGCATAATATT+AGG - chr4_3:74053623-74053642 Msa0662140:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG - chr4_3:74053624-74053643 Msa0662140:intron 35.0%
GTGAGAGTTACAAAATGTCT+TGG + chr4_3:74053697-74053716 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG + chr4_3:74053801-74053820 None:intergenic 35.0%
! CATGCCTTTCATTTTACTCA+TGG - chr4_3:74053812-74053831 Msa0662140:intron 35.0%
CATCCCATGAGTAAAATGAA+AGG + chr4_3:74053819-74053838 None:intergenic 35.0%
TGAAAGTAATCAATCGAGTC+TGG - chr4_3:74054198-74054217 Msa0662140:intron 35.0%
ATGTTAGTATCCACTATCCA+TGG - chr4_3:74054278-74054297 Msa0662140:intron 35.0%
!!! TTTTTTCTTGTTCAGGTACC+TGG - chr4_3:74054449-74054468 Msa0662140:intron 35.0%
CAGCTACATCTAATAGAAAC+TGG + chr4_3:74054628-74054647 None:intergenic 35.0%
TTTGGTGGAGTTATTAGCTG+AGG + chr4_3:74051609-74051628 None:intergenic 40.0%
CATTTGCAGAGCCTGTAATA+GGG - chr4_3:74051781-74051800 Msa0662140:three_prime_UTR 40.0%
ATGATAATATCCACCTGAGC+AGG + chr4_3:74051950-74051969 None:intergenic 40.0%
TTAACAGACCTCGCATAAAG+AGG - chr4_3:74052662-74052681 Msa0662140:intron 40.0%
CAACTCCAAACAGCATAGTA+AGG + chr4_3:74052691-74052710 None:intergenic 40.0%
! GATTTTGAGCCATAAGGGTT+TGG - chr4_3:74052866-74052885 Msa0662140:intron 40.0%
! ATTTGGGAAGGTGCATAGTA+GGG - chr4_3:74052896-74052915 Msa0662140:intron 40.0%
TGCAAGTGTTCTGCATTTCA+AGG - chr4_3:74053327-74053346 Msa0662140:intron 40.0%
TCGGTCCACTGACAAATAAA+TGG + chr4_3:74053384-74053403 None:intergenic 40.0%
TTGTCCAAGTGCTTTCACTT+TGG - chr4_3:74053586-74053605 Msa0662140:intron 40.0%
! TTCACTTTGGAGAGGATTGT+AGG - chr4_3:74053599-74053618 Msa0662140:intron 40.0%
TAAATGGGGTGAAGCAAAAG+AGG - chr4_3:74054033-74054052 Msa0662140:intron 40.0%
AAATGGGGTGAAGCAAAAGA+GGG - chr4_3:74054034-74054053 Msa0662140:intron 40.0%
GCGTCCATATAAAGAAATGC+AGG - chr4_3:74054057-74054076 Msa0662140:intron 40.0%
AGTCTGGAAAGTCTTGAACA+GGG - chr4_3:74054214-74054233 Msa0662140:intron 40.0%
AGTTAAGCAGACAACTCGAT+CGG + chr4_3:74054354-74054373 None:intergenic 40.0%
!! GCTCTTGGAGCATATTTTGG+TGG + chr4_3:74051624-74051643 None:intergenic 45.0%
!! ATGGTGCTACTGCTACCATT+CGG - chr4_3:74051646-74051665 Msa0662140:three_prime_UTR 45.0%
TTCAGCTATACCACACCGAA+TGG + chr4_3:74051664-74051683 None:intergenic 45.0%
TGTGGTATAGCTGAACCATC+TGG - chr4_3:74051669-74051688 Msa0662140:three_prime_UTR 45.0%
! GTCTTTTGTCCTAAAGGAGC+TGG + chr4_3:74051699-74051718 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG + chr4_3:74051783-74051802 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG - chr4_3:74051780-74051799 Msa0662140:three_prime_UTR 45.0%
CGAAGAGAGTAATGTTGCGT+CGG - chr4_3:74051861-74051880 Msa0662140:intron 45.0%
CTTCTTTCTATGCTTCCTCC+AGG - chr4_3:74051920-74051939 Msa0662140:intron 45.0%
ACCCTGTGTGGAAATTGTAG+CGG + chr4_3:74052557-74052576 None:intergenic 45.0%
CAAATGTCTTACACCCTGTG+TGG + chr4_3:74052569-74052588 None:intergenic 45.0%
CTTTATGCCTCATCCAGAGA+GGG - chr4_3:74052589-74052608 Msa0662140:intron 45.0%
CTTAACTATGCATCCCTCTC+TGG + chr4_3:74052605-74052624 None:intergenic 45.0%
TAAGGACTCCTCTTTATGCG+AGG + chr4_3:74052673-74052692 None:intergenic 45.0%
GGAGTCCTTACTATGCTGTT+TGG - chr4_3:74052683-74052702 Msa0662140:intron 45.0%
! TGCTGTTTGGAGTTGTCGTT+AGG - chr4_3:74052696-74052715 Msa0662140:intron 45.0%
AAGGACCAGTCCAACTTAAG+TGG + chr4_3:74052725-74052744 None:intergenic 45.0%
GTTGTCAGATGCAACTTGCA+AGG + chr4_3:74052744-74052763 None:intergenic 45.0%
! AGTGGGGATTTTGAGCCATA+AGG - chr4_3:74052860-74052879 Msa0662140:intron 45.0%
! GTGGGGATTTTGAGCCATAA+GGG - chr4_3:74052861-74052880 Msa0662140:intron 45.0%
! GATTTGGGAAGGTGCATAGT+AGG - chr4_3:74052895-74052914 Msa0662140:intron 45.0%
ATATTCTCAGTGTCCCAACC+CGG - chr4_3:74052943-74052962 Msa0662140:intron 45.0%
! ACAAGTTCGCAAGTTTGCTC+AGG + chr4_3:74052987-74053006 None:intergenic 45.0%
AACTCTGCAACCCATCTTGT+TGG + chr4_3:74053147-74053166 None:intergenic 45.0%
TATTTGTCAGTGGACCGAAC+CGG - chr4_3:74053386-74053405 Msa0662140:intron 45.0%
!! CTCTCCAAAGTGAAAGCACT+TGG + chr4_3:74053593-74053612 None:intergenic 45.0%
! CAAGTGCTTTCACTTTGGAG+AGG - chr4_3:74053591-74053610 Msa0662140:intron 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG - chr4_3:74053711-74053730 Msa0662140:intron 45.0%
AATGGGGTGAAGCAAAAGAG+GGG - chr4_3:74054035-74054054 Msa0662140:intron 45.0%
GAGTCTGGAAAGTCTTGAAC+AGG - chr4_3:74054213-74054232 Msa0662140:intron 45.0%
ATCCACTATCCATGGTTCGA+AGG - chr4_3:74054286-74054305 Msa0662140:intron 45.0%
AACCTTCGAACCATGGATAG+TGG + chr4_3:74054291-74054310 None:intergenic 45.0%
ACTATCCATGGTTCGAAGGT+TGG - chr4_3:74054290-74054309 Msa0662140:intron 45.0%
!! TATAAATAGAAAAATTTATA+GGG + chr4_3:74053954-74053973 None:intergenic 5.0%
!! ATATAAATAGAAAAATTTAT+AGG + chr4_3:74053955-74053974 None:intergenic 5.0%
GCAGTAGCACCATTTGCTCT+TGG + chr4_3:74051639-74051658 None:intergenic 50.0%
! AAAGGAGCTGGTTCACCAGA+TGG + chr4_3:74051687-74051706 None:intergenic 50.0%
TCTGGTGAACCAGCTCCTTT+AGG - chr4_3:74051687-74051706 Msa0662140:three_prime_UTR 50.0%
GCAACAGCAAGTTGTTCGTG+AGG - chr4_3:74051895-74051914 Msa0662140:intron 50.0%
TCTTGCTTCTTGCAGACGTG+TGG - chr4_3:74052519-74052538 Msa0662140:intron 50.0%
ACCCGCTACAATTTCCACAC+AGG - chr4_3:74052552-74052571 Msa0662140:intron 50.0%
CCCTGTGTGGAAATTGTAGC+GGG + chr4_3:74052556-74052575 None:intergenic 50.0%
CCCGCTACAATTTCCACACA+GGG - chr4_3:74052553-74052572 Msa0662140:intron 50.0%
GCTTTATGCCTCATCCAGAG+AGG - chr4_3:74052588-74052607 Msa0662140:intron 50.0%
TATGCATCCCTCTCTGGATG+AGG + chr4_3:74052599-74052618 None:intergenic 50.0%
CGTTAGGCCTCCACTTAAGT+TGG - chr4_3:74052712-74052731 Msa0662140:intron 50.0%
GACCAGTCCAACTTAAGTGG+AGG + chr4_3:74052722-74052741 None:intergenic 50.0%
TCCCAACCCGGCTATTCATT+CGG - chr4_3:74052955-74052974 Msa0662140:intron 50.0%
AAGTCGCCGAATGAATAGCC+GGG + chr4_3:74052964-74052983 None:intergenic 50.0%
GAAGTCGCCGAATGAATAGC+CGG + chr4_3:74052965-74052984 None:intergenic 50.0%
TCTGCAACCCATCTTGTTGG+TGG + chr4_3:74053144-74053163 None:intergenic 50.0%
TGACAGTGCCTTTCTTCCAC+TGG - chr4_3:74053178-74053197 Msa0662140:intron 50.0%
! CCTTTCTTCCACTGGCTAGT+GGG - chr4_3:74053186-74053205 Msa0662140:intron 50.0%
!! GGACCGAACCGGTTTTCAAA+TGG - chr4_3:74053397-74053416 Msa0662140:intron 50.0%
CCGCCATTTGAAAACCGGTT+CGG + chr4_3:74053403-74053422 None:intergenic 50.0%
!! CCGAACCGGTTTTCAAATGG+CGG - chr4_3:74053400-74053419 Msa0662140:intron 50.0%
CAAATGGCGGTAAATCCTCC+AGG - chr4_3:74053413-74053432 Msa0662140:intron 50.0%
GCAAGTTGCAAGTTGCAAGC+TGG + chr4_3:74053763-74053782 None:intergenic 50.0%
AAGGTCCAACCTTCGAACCA+TGG + chr4_3:74054298-74054317 None:intergenic 50.0%
! CAACTCGATCGGTGAGTTGA+GGG + chr4_3:74054343-74054362 None:intergenic 50.0%
ACAACTCGATCGGTGAGTTG+AGG + chr4_3:74054344-74054363 None:intergenic 50.0%
TTCAGGTACCTGGAGAACAG+TGG - chr4_3:74054459-74054478 Msa0662140:intron 50.0%
CAACACATCCACTGTTCTCC+AGG + chr4_3:74054470-74054489 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG - chr4_3:74054468-74054487 Msa0662140:CDS 50.0%
! GCTACTGCTACCATTCGGTG+TGG - chr4_3:74051651-74051670 Msa0662140:three_prime_UTR 55.0%
GCAGAGGGACGCGAGAATAT+GGG + chr4_3:74052467-74052486 None:intergenic 55.0%
TGCAGAGGGACGCGAGAATA+TGG + chr4_3:74052468-74052487 None:intergenic 55.0%
TGCTTCTTGCAGACGTGTGG+TGG - chr4_3:74052522-74052541 Msa0662140:intron 55.0%
GCTTCTTGCAGACGTGTGGT+GGG - chr4_3:74052523-74052542 Msa0662140:intron 55.0%
!! GGCCTCCACTTAAGTTGGAC+TGG - chr4_3:74052717-74052736 Msa0662140:intron 55.0%
! GGGAAGGTGCATAGTAGGGA+TGG - chr4_3:74052900-74052919 Msa0662140:intron 55.0%
GCCGAATGAATAGCCGGGTT+GGG + chr4_3:74052959-74052978 None:intergenic 55.0%
! GCCTTTCTTCCACTGGCTAG+TGG - chr4_3:74053185-74053204 Msa0662140:intron 55.0%
CCCACTAGCCAGTGGAAGAA+AGG + chr4_3:74053189-74053208 None:intergenic 55.0%
! GGTGAGTTGAGGGCCATCAA+TGG + chr4_3:74054333-74054352 None:intergenic 55.0%
! TCTTGCAGACGTGTGGTGGG+TGG - chr4_3:74052526-74052545 Msa0662140:intron 60.0%
!! CTTGCAGACGTGTGGTGGGT+GGG - chr4_3:74052527-74052546 Msa0662140:intron 60.0%
CGCCGAATGAATAGCCGGGT+TGG + chr4_3:74052960-74052979 None:intergenic 60.0%
CAGAAGGACCCACTAGCCAG+TGG + chr4_3:74053197-74053216 None:intergenic 60.0%
! CTGGCTAGTGGGTCCTTCTG+AGG - chr4_3:74053197-74053216 Msa0662140:intron 60.0%
TCCTCCAGGTGCGCCTGCTC+AGG - chr4_3:74051934-74051953 Msa0662140:intron 70.0%
ACCTGAGCAGGCGCACCTGG+AGG + chr4_3:74051938-74051957 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG - chr4_3:74051937-74051956 Msa0662140:intron 70.0%
TCCACCTGAGCAGGCGCACC+TGG + chr4_3:74051941-74051960 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 74051579 74054734 74051579 ID=Msa0662140;Name=Msa0662140
chr4_3 mRNA 74051579 74054734 74051579 ID=Msa0662140-mRNA-1;Parent=Msa0662140;Name=Msa0662140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.4|0.33|1|0.6|0.66|6|232|161
chr4_3 exon 74051579 74051849 74051579 ID=Msa0662140-mRNA-1:exon:22319;Parent=Msa0662140-mRNA-1
chr4_3 exon 74052255 74052296 74052255 ID=Msa0662140-mRNA-1:exon:22318;Parent=Msa0662140-mRNA-1
chr4_3 exon 74053095 74053187 74053095 ID=Msa0662140-mRNA-1:exon:22317;Parent=Msa0662140-mRNA-1
chr4_3 exon 74054358 74054417 74054358 ID=Msa0662140-mRNA-1:exon:22316;Parent=Msa0662140-mRNA-1
chr4_3 exon 74054468 74054713 74054468 ID=Msa0662140-mRNA-1:exon:22315;Parent=Msa0662140-mRNA-1
chr4_3 exon 74054729 74054734 74054729 ID=Msa0662140-mRNA-1:exon:22314;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74054729 74054734 74054729 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74054468 74054713 74054468 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74054358 74054417 74054358 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74053095 74053187 74053095 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74052255 74052296 74052255 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 CDS 74051811 74051849 74051811 ID=Msa0662140-mRNA-1:cds;Parent=Msa0662140-mRNA-1
chr4_3 three_prime_UTR 74051579 74051810 74051579 ID=Msa0662140-mRNA-1:three_prime_utr;Parent=Msa0662140-mRNA-1
Gene Sequence

>Msa0662140

ATGGTGCTTGTTCCTCAGCTAATAACTCCACCAAAATATGCTCCAAGAGCAAATGGTGCTACTGCTACCATTCGGTGTGGTATAGCTGAACCATCTGGTGAACCAGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAGAAGAAGAAAAAAAAGGGTTGGTTTATGAGACAACAGCAAGTTGTTCGTGAGGTTCTTCTTTCTATGCTTCCTCCAGGTGCGCCTGCTCAGTTTAGGAAATTATTTCCACCAACAAGATGGGTTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTGGGTCCTTCTGAGGTTATAGAAGTGGAGATAAATGGGGTGAAGCAAAAGAGGGGCGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAA

Protein sequence

>Msa0662140

MVLVPQLITPPKYAPRANGATATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKKKKGWFMRQQQVVREVLLSMLPPGAPAQFRKLFPPTRWVAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKRGVPGEQWMCWTVC*