AlfalfaGEDB | Msa0336730

M. sativa cultivar zhongmu-4 / Msa0336730

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336730	XP_024632038.1	92.230	991	71	4	1	990	1	986	0.0	1869

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336730	sp\|Q9ZR08\|Y4230_ARATH	59.432	387	146	3	584	961	435	819	1.16e-152	476
Msa0336730	sp\|Q9ZR08\|Y4230_ARATH	38.967	426	240	12	13	429	17	431	4.19e-77	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa0336730	0.810028	1.412589e-50	-8.615850e-47
Msa0002700	Msa0336730	0.805381	1.371797e-49	-8.615850e-47
Msa0005500	Msa0336730	0.801065	1.073401e-48	-8.615850e-47
Msa0007810	Msa0336730	0.800242	1.579963e-48	-8.615850e-47
Msa0011060	Msa0336730	0.820133	8.056344e-53	-8.615850e-47
Msa0011100	Msa0336730	0.802145	6.447369e-49	-8.615850e-47
Msa0014970	Msa0336730	0.810670	1.027015e-50	-8.615850e-47
Msa0021240	Msa0336730	0.804368	2.234298e-49	-8.615850e-47
Msa0025090	Msa0336730	0.812230	4.707275e-51	-8.615850e-47
Msa0026120	Msa0336730	0.816103	6.569396e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336730	MtrunA17_Chr2g0323231	88.411	535	21	2	456	990	1	494	0.0	961
Msa0336730	MtrunA17_Chr4g0023111	50.710	1057	419	31	1	990	5	1026	0.0	946
Msa0336730	MtrunA17_Chr4g0023221	47.198	1017	459	23	16	977	39	1032	0.0	874
Msa0336730	MtrunA17_Chr2g0323241	87.850	428	48	3	1	427	1	425	0.0	771
Msa0336730	MtrunA17_Chr7g0236531	59.211	304	124	0	659	962	23	326	9.15e-129	394
Msa0336730	MtrunA17_Chr4g0048581	61.364	308	118	1	659	966	516	822	2.03e-128	409
Msa0336730	MtrunA17_Chr4g0048581	29.224	438	264	14	19	432	23	438	7.56e-43	169
Msa0336730	MtrunA17_Chr2g0280751	53.209	374	166	5	596	966	450	817	1.15e-127	407
Msa0336730	MtrunA17_Chr2g0280751	26.923	442	259	18	20	433	31	436	9.61e-34	140
Msa0336730	MtrunA17_Chr2g0280681	57.101	338	139	2	659	990	486	823	1.36e-127	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336730	AT4G03230.4	47.439	976	471	20	13	961	17	977	0.0	856
Msa0336730	AT4G03230.1	47.439	976	471	20	13	961	17	977	0.0	856
Msa0336730	AT4G03230.5	48.253	887	423	17	101	961	29	905	0.0	799
Msa0336730	AT4G03230.2	46.328	885	415	17	101	961	29	877	0.0	749
Msa0336730	AT4G03230.6	46.328	885	415	17	101	961	29	877	0.0	749
Msa0336730	AT4G03230.7	47.874	823	397	14	161	961	8	820	0.0	739
Msa0336730	AT4G03230.3	47.810	822	397	14	162	961	1	812	0.0	735
Msa0336730	AT4G03230.8	59.432	387	146	3	584	961	435	819	1.18e-153	476
Msa0336730	AT4G03230.8	38.967	426	240	12	13	429	17	431	4.25e-78	273
Msa0336730	AT4G21390.1	57.751	329	131	2	659	987	513	833	2.04e-128	410

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Find 214 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACACGGGTTTCTTT+CGG	0.386891	2_4:-56306480	Msa0336730:CDS
AAACCATGCAAGTGTTTGCC+AGG	0.484618	2_4:-56309750	Msa0336730:CDS
AAACGTCCTCGTCAAGAAAG+AGG	0.550213	2_4:-56310295	Msa0336730:CDS
AAAGAGGGTAGTGAAGCTCT+TGG	0.542055	2_4:-56310279	Msa0336730:CDS
AAAGTGGGAAACCCAGACCA+AGG	0.676812	2_4:-56309591	Msa0336730:CDS
AACAGAAACAACCCTATTGT+AGG	0.515575	2_4:-56310401	Msa0336730:CDS
AACCCTATTGTAGGTTCCGA+CGG	0.587294	2_4:-56310392	Msa0336730:CDS
AACCTGCGAGGGCGGAATCC+TGG	0.438216	2_4:+56309732	None:intergenic
AACGTCCTCGTCAAGAAAGA+GGG	0.567008	2_4:-56310294	Msa0336730:CDS
AAGAAAATTGGCCACAAGCT+TGG	0.448132	2_4:-56307984	Msa0336730:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGGCAATAATATATCTC+AGG	-	chr2_4:56305976-56305995	Msa0336730:three_prime_UTR	30.0%
TATTTCCATCCTTTGCAATT+TGG	+	chr2_4:56306192-56306211	None:intergenic	30.0%
AATTGCAAAGGATGGAAATA+TGG	-	chr2_4:56306192-56306211	Msa0336730:CDS	30.0%
ATTTCTTCCAGGTATGAAAA+TGG	-	chr2_4:56306369-56306388	Msa0336730:intron	30.0%
ATACTTGTGCAATGAATTAG+AGG	+	chr2_4:56306587-56306606	None:intergenic	30.0%
CTTTCGATTACGATAAATCA+AGG	-	chr2_4:56306632-56306651	Msa0336730:intron	30.0%
GGTATGATGAAAACATTCAA+TGG	-	chr2_4:56306695-56306714	Msa0336730:intron	30.0%
TGTGACATACATAACTATTG+TGG	-	chr2_4:56306748-56306767	Msa0336730:CDS	30.0%
CAATCTAACCAAGATAAAAG+TGG	-	chr2_4:56306945-56306964	Msa0336730:CDS	30.0%
TGCGATCTTGAAATGATAAA+TGG	-	chr2_4:56307247-56307266	Msa0336730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	56305878	56310696	56305878	ID=Msa0336730;Name=Msa0336730
chr2_4	mRNA	56305878	56310696	56305878	ID=Msa0336730-mRNA-1;Parent=Msa0336730;Name=Msa0336730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=21\|1\|1\|1\|0.71\|0.62\|8\|183\|990
chr2_4	exon	56305878	56306360	56305878	ID=Msa0336730-mRNA-1:exon:17216;Parent=Msa0336730-mRNA-1
chr2_4	exon	56306450	56306600	56306450	ID=Msa0336730-mRNA-1:exon:17215;Parent=Msa0336730-mRNA-1
chr2_4	exon	56306739	56306976	56306739	ID=Msa0336730-mRNA-1:exon:17214;Parent=Msa0336730-mRNA-1
chr2_4	exon	56307395	56307605	56307395	ID=Msa0336730-mRNA-1:exon:17213;Parent=Msa0336730-mRNA-1
chr2_4	exon	56307674	56307876	56307674	ID=Msa0336730-mRNA-1:exon:17212;Parent=Msa0336730-mRNA-1
chr2_4	exon	56307985	56308101	56307985	ID=Msa0336730-mRNA-1:exon:17211;Parent=Msa0336730-mRNA-1
chr2_4	exon	56308444	56308914	56308444	ID=Msa0336730-mRNA-1:exon:17210;Parent=Msa0336730-mRNA-1
chr2_4	exon	56309394	56310696	56309394	ID=Msa0336730-mRNA-1:exon:17209;Parent=Msa0336730-mRNA-1
chr2_4	five_prime_UTR	56310676	56310696	56310676	ID=Msa0336730-mRNA-1:five_prime_utr;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56309394	56310675	56309394	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56308444	56308914	56308444	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56307985	56308101	56307985	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56307674	56307876	56307674	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56307395	56307605	56307395	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56306739	56306976	56306739	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56306450	56306600	56306450	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	CDS	56306061	56306360	56306061	ID=Msa0336730-mRNA-1:cds;Parent=Msa0336730-mRNA-1
chr2_4	three_prime_UTR	56305878	56306060	56305878	ID=Msa0336730-mRNA-1:three_prime_utr;Parent=Msa0336730-mRNA-1

Gene Sequence

>Msa0336730

ATGAGAAACGTTGTTATGTTTTCCCTCCCTTTTTTGCTGATATGCTTTCAACTATGTTCTGCTACATATATTTTAAACTTTGGCAATAATATATCTCAGGACAACTCAAATAACCTTGTTTCACTTGAAAAGAAATTTCAACTGGGTTTTTTCTCCTTACCAATTGAAAGTGGTAGCAACACCAAGAATCTTAAAAAATACTTGGGGATATGGTATCACGATTTGGAACCACAAACAGTGGTATGGGTAGCCAACAGAAACAACCCTATTGTAGGTTCCGACGGAGTTTTCCAAATTGCAAAGGATGGAAATATGGTAGTAGCAGATGCATCACAGAGTTATTGGTCTACAAAATTAGAAACGTCCTCGTCAAGAAAGAGGGTAGTGAAGCTCTTGGATTCTGGAAACCTAGTGCTTATGGATGATGATCATGGTTACTTGTGGCAAAGCTTCCAACATCCAACAGATACATTTCTTCCAGGTATGAAAATGGACATAAATTTAACTTTGCGTTCTTGGAAAAATGAGAACGATCCAGGAAGTGGAAGCTTCACCTTTCAGAAGGTACAAACAGGCGGCCCTCGAAGCTATGCAGTAAACAATCAGTCACAGCTTTATTGGGCATTTGATGGACACAATTCAGATAAGATGTTCAACAACATTCTTGACTTGTTGGAGAACTGGACCTCTAATTCATTGCACAAGTATAGAAACATAACCATCAAACAACGATCTTTCGATTACGATAAATCAAGGCTATTGATGAATTCTACTGGGGAGATACAACTTTGGAAGTGGTATGATGAAAACATTCAATGGCTTAACGAGTGGTCACGGCCATCAGAAAAATGTGACATACATAACTATTGTGGTAGCTTTAGCAGCTGCAACAAAAATAACTGGAAACCATGCAAGTGTTTGCCAGGATTCCGCCCTCGCAGGTTATCCGATAATGATCATGGTTACCCTGAAGGCTTCCAAGGGTGTGTTAGAAAATCATCCAAACAGTGTTCCACAGCCACTACAAACAATAACATGATATTCATCAATCTAACCAAGATAAAAGTGGGAAACCCAGACCAAGGATTCTTATCTGAAACAGAAGCAGAGTGTCAATCTTTATGCCTTAACACGTGTCCGTGCAATGCTTATTCATATAATGCTACATATAATGATCGTAGTTACTTTTCTTGTCGGATATGGACACGAGAATTACCTACACTTCAAGAGGAGCAGGATGATGGTCGTGATTTTTCGATCCTAGTCAAGAGTTCAGATATAGAATCAACTGCCAAATCGTGTGGACCTTGTGGCACATATATAATTCCGTATCCTCTAAGCACCGGGCCAACATGTGGGGACCCTATGTACAACAAATTCAATTGTAACTTATTGACAGGTCAGGTTAGTTTCATGATGCCAGGTGGAAAACCCTATCGAGTTACCTGGATTGAAAAAGATGGTAGAAAGTTTTATATCCAAACAAATGATACAAATCACTGTGATGATTCCAGTTCAAGTAGTTATCAAAATGATAAACCTAGTTCACCATTTAATGTGACTAATTGGTGTTTTAAAGATGATGAAATAGAGGTCAATTGGGCACCAGCACCAGAACCACAATGTGATGAGTATTTTAGCTGCAAAAGTTGGCCCCATTCCACATGCATTGCAAACAGTAGTGGTGGAGAAAGTAGGTGCCATTGTGATTCAAAATATATCTGGAACCCCTCAAGTTTAAGCTGTATCAAAGGATCAAGAACCTATCCAAAGCCATTGACTCTTGCAGTAATTTGTATAGTCATTATTATCTTAACATGTACAGTGGTGTTTGCTTATATACGGAGAAAGAAAATTGGCCACAAGCTTGATAAGGTGAGCATTCAAATTCAGGAGAGCTTGCACGACAGTGAAAAGCATGTGAGAGATTTGATTGGCTTAGGAAATTTAGAAGAAAATGATAGTGAAAGCATTGAAGTGCCTTATTATACTTTTAGAAGCATTCAAGCAGCTACAAATAATTTTTCAGATTCAAACAAGCTTGGACAAGGAGGTTATGGACCTGTCTATAAGGGAAGGTTTCCTGGAGGTCAGGAGATTGCTATCAAGAGGCTTTCAAGTGTTTCAACTCAAGGCTTACAAGAATTTAAAAATGAGATTGTTTTGATTGCCAAACTTCAACATCGAAATCTTGTTAGGCTAAGGGGCTATTGTGTTAAAGGAGACGAAAAAATCCTACTATATGAATACATGTCAAACAAGAGCTTGGACACATTTATATTTGACCGAACACGAACTGTACTTTTGGGTTGGAAACTGCGGTTTGACATTATTGTTGGCATTGCCCGAGGGATGCTTTATCTCCATCAAGACTCGAGATTGAGAGTGATTCATAGAGACCTTAAAACAAGCAACATTCTTTTAGATGATGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGGAAAGAGACTGAAGCAAGCACCCAAAGAGTAATGGGAACCTATGGATATATGTCTCCAGAGTATGCTTTGGATGGATTCTTCTCAATCAAATCAGATGTTTTTAGCTTTGGCGTAGTCCTACTAGAGATCCTCAGTGGTAAAAAGAACACGGGTTTCTTTCGGTCCCAACAAATTTCTAGCCTCTTGGGATATGCATGGAGATTATGGACAGAGAATAAGTTGCAGGATTTAATGGACTCAGCTCTTAGTGAAACATGCAATGAGAATGAATTTGTTAAGTGTGCACAAATTGGACTCTTATGCGTACAAGATGAACCAGGTGATCGACCCACCATGTCAAATATCTTGACAATGCTTGACAGTGAGAGTGCAACCATCCCAATTCCATCACAACCAACCTTTTTTACGATCAAACACCAATCATGCAGTTCTTCTTCTAGCAAACTAGAAATAAGTATGCAAATTGATACTAGCTATCAAGAAGGTCGATAG

Protein sequence

>Msa0336730

MRNVVMFSLPFLLICFQLCSATYILNFGNNISQDNSNNLVSLEKKFQLGFFSLPIESGSNTKNLKKYLGIWYHDLEPQTVVWVANRNNPIVGSDGVFQIAKDGNMVVADASQSYWSTKLETSSSRKRVVKLLDSGNLVLMDDDHGYLWQSFQHPTDTFLPGMKMDINLTLRSWKNENDPGSGSFTFQKVQTGGPRSYAVNNQSQLYWAFDGHNSDKMFNNILDLLENWTSNSLHKYRNITIKQRSFDYDKSRLLMNSTGEIQLWKWYDENIQWLNEWSRPSEKCDIHNYCGSFSSCNKNNWKPCKCLPGFRPRRLSDNDHGYPEGFQGCVRKSSKQCSTATTNNNMIFINLTKIKVGNPDQGFLSETEAECQSLCLNTCPCNAYSYNATYNDRSYFSCRIWTRELPTLQEEQDDGRDFSILVKSSDIESTAKSCGPCGTYIIPYPLSTGPTCGDPMYNKFNCNLLTGQVSFMMPGGKPYRVTWIEKDGRKFYIQTNDTNHCDDSSSSSYQNDKPSSPFNVTNWCFKDDEIEVNWAPAPEPQCDEYFSCKSWPHSTCIANSSGGESRCHCDSKYIWNPSSLSCIKGSRTYPKPLTLAVICIVIIILTCTVVFAYIRRKKIGHKLDKVSIQIQESLHDSEKHVRDLIGLGNLEENDSESIEVPYYTFRSIQAATNNFSDSNKLGQGGYGPVYKGRFPGGQEIAIKRLSSVSTQGLQEFKNEIVLIAKLQHRNLVRLRGYCVKGDEKILLYEYMSNKSLDTFIFDRTRTVLLGWKLRFDIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDDEMNPKISDFGLAKIFGGKETEASTQRVMGTYGYMSPEYALDGFFSIKSDVFSFGVVLLEILSGKKNTGFFRSQQISSLLGYAWRLWTENKLQDLMDSALSETCNENEFVKCAQIGLLCVQDEPGDRPTMSNILTMLDSESATIPIPSQPTFFTIKHQSCSSSSSKLEISMQIDTSYQEGR*