AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648630 MtrunA17_Chr4g0040041 100.000 342 0 0 1 342 123 464 0.0 691
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648630 AT4G27600.1 77.419 341 77 0 1 341 131 471 0.0 560
Msa0648630 AT1G19600.1 23.569 297 208 6 1 290 24 308 2.29e-11 64.7

Find 78 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACATTATGATCATTTC+TGG 0.149192 4_3:+55096324 Msa0648630:CDS
TGAGGAGTTCCTGAAGAATT+TGG 0.171687 4_3:+55094702 Msa0648630:CDS
GGCTCTTACATAGGCGTAAA+AGG 0.296593 4_3:+55097358 Msa0648630:CDS
GTTATTGCTTTAATAGTATC+AGG 0.310002 4_3:-55096230 None:intergenic
TTTCCAATCCCAAATTCTTC+AGG 0.318758 4_3:-55094711 None:intergenic
CCAGTTGTTGCATCCTTGAT+AGG 0.321106 4_3:-55095224 None:intergenic
AATTTCAGATGCAGTCAAAT+TGG 0.322488 4_3:+55097561 Msa0648630:CDS
GAGGAGTTCCTGAAGAATTT+GGG 0.335077 4_3:+55094703 Msa0648630:CDS
TTCTAATACTTTAGTTGCCT+TGG 0.350723 4_3:+55094828 Msa0648630:CDS
GAAGAATTTGGGATTGGAAA+AGG 0.352985 4_3:+55094714 Msa0648630:CDS
CAGTGTGGCGAGCGATCTAT+TGG 0.383914 4_3:+55094906 Msa0648630:CDS
CCCTCCTTCTCCATGTGTTC+CGG 0.393076 4_3:+55097396 Msa0648630:CDS
ATCTATTGGGTGGCTTCTAC+AGG 0.397421 4_3:+55094920 Msa0648630:CDS
AGCAATAACAAAAGCTTGTA+AGG 0.402404 4_3:+55096244 Msa0648630:CDS
TTAGTTGCCTTGGCAAGGCT+TGG 0.404584 4_3:+55094838 Msa0648630:CDS
AGCTAGGAGTAACGGTGCTT+TGG 0.411129 4_3:+55096268 Msa0648630:CDS
AACTTGATACATCCGTTGTT+AGG 0.411138 4_3:+55097602 Msa0648630:CDS
ATTTCTTTCTGCACCTATCA+AGG 0.411704 4_3:+55095211 Msa0648630:CDS
AGCCACTGTTGTTGCACAGC+AGG 0.416821 4_3:+55097525 Msa0648630:CDS
CCTATCAAGGATGCAACAAC+TGG 0.418229 4_3:+55095224 Msa0648630:CDS
TAATTAAACAGTACCGATAT+CGG 0.419189 4_3:-55097626 None:intergenic
AGCATTGTGCGTTGAGCATC+TGG 0.419386 4_3:-55095269 None:intergenic
CCATTCAACAGGGAAATTGT+AGG 0.424167 4_3:+55097196 Msa0648630:intron
TGTCAACTTCGACACTTCCT+TGG 0.432059 4_3:+55096151 Msa0648630:CDS
GTGTCGGATTTAAGAAATAT+AGG 0.450420 4_3:+55097481 Msa0648630:CDS
GTTCCTGAAGAATTTGGGAT+TGG 0.452424 4_3:+55094708 Msa0648630:CDS
CAAAAGCTTGTAAGGAAGCT+AGG 0.453074 4_3:+55096252 Msa0648630:CDS
ACCAACATACTTGTTGTTGA+AGG 0.456941 4_3:+55096191 Msa0648630:CDS
AAGAATTTGGGATTGGAAAA+GGG 0.459384 4_3:+55094715 Msa0648630:CDS
TGCAGCTATAAAGCCGCGGC+TGG 0.464008 4_3:+55094796 Msa0648630:CDS
AAGTTGAAATTCAAAAGATT+CGG 0.464216 4_3:-55097584 None:intergenic
GCTGGTGATGCATATGCATC+TGG 0.479499 4_3:+55097433 Msa0648630:CDS
CCGGTAGACACTTGTGGTGC+TGG 0.480771 4_3:+55097415 Msa0648630:CDS
TCCGTTGTTAGGTCCGATAT+CGG 0.481454 4_3:+55097613 Msa0648630:CDS
ACGCACAATGCTTGCATACC+AGG 0.486607 4_3:+55095280 Msa0648630:CDS
GTTGCCTTGGCAAGGCTTGG+AGG 0.487942 4_3:+55094841 Msa0648630:CDS
GCTATAAATGTGGCAATGGC+TGG 0.495219 4_3:+55094883 Msa0648630:CDS
TTTATAGCTGCAACCATCCA+TGG 0.506445 4_3:-55094785 None:intergenic
ATCATAATGTCTCTCAATGC+AGG 0.507542 4_3:-55096315 None:intergenic
GCCATTGCCACATTTATAGC+AGG 0.508000 4_3:-55094880 None:intergenic
GCCTCGGAGACCATCGGTAA+CGG 0.521634 4_3:-55097338 None:intergenic
GGTCTCCGAGGCTCTTACAT+AGG 0.529019 4_3:+55097349 Msa0648630:CDS
TGGGATTGGAAAAGGGAACA+AGG 0.529868 4_3:+55094722 Msa0648630:CDS
TATGCATCTGGCATATTGTA+TGG 0.530322 4_3:+55097445 Msa0648630:CDS
AAAGCACTGTTTCTGTTACA+AGG 0.531055 4_3:+55097287 Msa0648630:CDS
TATAGGTACAATAGCAGCTA+AGG 0.531215 4_3:+55097498 Msa0648630:CDS
ATACTTTAGTTGCCTTGGCA+AGG 0.531967 4_3:+55094833 Msa0648630:CDS
TCCTGCTATAAATGTGGCAA+TGG 0.541036 4_3:+55094879 Msa0648630:CDS
AGTGTGGCGAGCGATCTATT+GGG 0.541135 4_3:+55094907 Msa0648630:CDS
CTTGTAAATCATGAGGAAAG+AGG 0.549271 4_3:+55094748 Msa0648630:CDS
AGCTATAAAGCCGCGGCTGG+TGG 0.554611 4_3:+55094799 Msa0648630:CDS
CTTAGAAACTGCACTTGCCA+AGG 0.558762 4_3:-55096168 None:intergenic
CAAGTGTCTACCGGAACACA+TGG 0.562852 4_3:-55097406 None:intergenic
CTTCTCTGGCACAGTTGATG+AGG 0.569230 4_3:+55094684 Msa0648630:CDS
GCGACCTCCAAGCCTTGCCA+AGG 0.575335 4_3:-55094845 None:intergenic
TTGTTGCACAGCAGGGAACA+AGG 0.580537 4_3:+55097533 Msa0648630:CDS
TTACGCCTATGTAAGAGCCT+CGG 0.581757 4_3:-55097354 None:intergenic
GCCACTGTTGTTGCACAGCA+GGG 0.593186 4_3:+55097526 Msa0648630:CDS
ACCTTCAACAACAAGTATGT+TGG 0.598982 4_3:-55096192 None:intergenic
ACCGGAACACATGGAGAAGG+AGG 0.600561 4_3:-55097397 None:intergenic
CCAGCACCACAAGTGTCTAC+CGG 0.605293 4_3:-55097415 None:intergenic
GTAAGAGCCTCGGAGACCAT+CGG 0.605674 4_3:-55097344 None:intergenic
AGAAAGAGATCCACCAGCCG+CGG 0.617726 4_3:-55094809 None:intergenic
AAGGAAACTTGTAAATCATG+AGG 0.626570 4_3:+55094741 Msa0648630:CDS
TCGAGATCCTGCTATAAATG+TGG 0.626575 4_3:+55094873 Msa0648630:CDS
TGTAAGGAAGCTAGGAGTAA+CGG 0.626889 4_3:+55096260 Msa0648630:CDS
CCTCTAGTATCCGTTACCGA+TGG 0.630285 4_3:+55097328 Msa0648630:CDS
ACCGATATCGGACCTAACAA+CGG 0.634403 4_3:-55097614 None:intergenic
TCCGTTACCGATGGTCTCCG+AGG 0.636605 4_3:+55097337 Msa0648630:CDS
TCCCTGCTGTGCAACAACAG+TGG 0.645669 4_3:-55097527 None:intergenic
CATCGGTAACGGATACTAGA+GGG 0.659674 4_3:-55097327 None:intergenic
CCATCGGTAACGGATACTAG+AGG 0.659811 4_3:-55097328 None:intergenic
TCTACCGGAACACATGGAGA+AGG 0.666277 4_3:-55097400 None:intergenic
GTGGCGAGCGATCTATTGGG+TGG 0.668623 4_3:+55094910 Msa0648630:CDS
CCGGAACACATGGAGAAGGA+GGG 0.669249 4_3:-55097396 None:intergenic
TGGTTGCAGCTATAAAGCCG+CGG 0.697252 4_3:+55094792 Msa0648630:CDS
TGTGGCAATGGCTGGCAGTG+TGG 0.708642 4_3:+55094891 Msa0648630:CDS
TGTGTTCCGGTAGACACTTG+TGG 0.728781 4_3:+55097409 Msa0648630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTTCATTATGAA+TGG + chr4_3:55095566-55095585 Msa0648630:intron 10.0%
!!! TAAATTTTAGGGAAAAATTA+CGG + chr4_3:55095174-55095193 Msa0648630:intron 15.0%
!! ATAATCAATAACAATATTGT+GGG - chr4_3:55095820-55095839 None:intergenic 15.0%
!! AATAATCAATAACAATATTG+TGG - chr4_3:55095821-55095840 None:intergenic 15.0%
!! AATTGTATTTACCTTTATTA+TGG + chr4_3:55096019-55096038 Msa0648630:intron 15.0%
!! ATATTGAATCAATCAACAAT+AGG + chr4_3:55095494-55095513 Msa0648630:intron 20.0%
!!! CTTTTGTTTTTTCAATTTTG+CGG + chr4_3:55096059-55096078 Msa0648630:intron 20.0%
!! TCATTATATGAACTAATGAA+GGG + chr4_3:55096082-55096101 Msa0648630:intron 20.0%
!! TTCATTATTATTAGAGAACA+AGG - chr4_3:55096469-55096488 None:intergenic 20.0%
!!! TAATGAATAGTGAATTTGTT+AGG + chr4_3:55096482-55096501 Msa0648630:intron 20.0%
!!! AATGAATAGTGAATTTGTTA+GGG + chr4_3:55096483-55096502 Msa0648630:intron 20.0%
!!! ATCTGTGTTTTATAAAATGT+GGG + chr4_3:55096635-55096654 Msa0648630:intron 20.0%
!! TTGTTGCAAGTTAAATTATT+TGG - chr4_3:55096913-55096932 None:intergenic 20.0%
!!! AATGCTTTATCTTTAATTTC+TGG - chr4_3:55096956-55096975 None:intergenic 20.0%
!! AAGTTGAAATTCAAAAGATT+CGG - chr4_3:55097587-55097606 None:intergenic 20.0%
! ATATAAGGAAGAAGCTAATT+TGG + chr4_3:55095014-55095033 Msa0648630:intron 25.0%
! AATTGTATAGAAATGAGAGA+AGG - chr4_3:55095047-55095066 None:intergenic 25.0%
! AATGTAAAGTATATTGAACC+TGG - chr4_3:55095301-55095320 None:intergenic 25.0%
!! TTCTTGAGAAGATATTTCTA+AGG + chr4_3:55095353-55095372 Msa0648630:intron 25.0%
! TGGAACTTAAATGTTAAAGA+AGG - chr4_3:55095609-55095628 None:intergenic 25.0%
!! TAACATTTAAGTTCCATCAA+TGG + chr4_3:55095613-55095632 Msa0648630:intron 25.0%
! AAAGTAAGTTTAATGTTTCC+AGG - chr4_3:55095783-55095802 None:intergenic 25.0%
!!! ATGCTATTTCAGGAAATTTT+AGG + chr4_3:55095985-55096004 Msa0648630:intron 25.0%
! CATAGATTTAGCCATAATAA+AGG - chr4_3:55096033-55096052 None:intergenic 25.0%
! CTTTATTATGGCTAAATCTA+TGG + chr4_3:55096031-55096050 Msa0648630:intron 25.0%
! GTCATTATATGAACTAATGA+AGG + chr4_3:55096081-55096100 Msa0648630:intron 25.0%
! GTTATTGCTTTAATAGTATC+AGG - chr4_3:55096233-55096252 None:intergenic 25.0%
!! AAATTGTCGTATATTTTCTG+CGG + chr4_3:55096545-55096564 Msa0648630:intron 25.0%
! ACAGATGAATACCAAAATTA+GGG - chr4_3:55096621-55096640 None:intergenic 25.0%
!! CATCTGTGTTTTATAAAATG+TGG + chr4_3:55096634-55096653 Msa0648630:intron 25.0%
! TTGAAAGTGAATAACAGTAA+AGG - chr4_3:55096788-55096807 None:intergenic 25.0%
!!! TAATTTAACTTGCAACAACT+CGG + chr4_3:55096915-55096934 Msa0648630:intron 25.0%
!! TAGGTTCTGATCTTAATTAA+TGG - chr4_3:55097065-55097084 None:intergenic 25.0%
!!! TCTATGTAATTTTGATGCAA+AGG + chr4_3:55097264-55097283 Msa0648630:CDS 25.0%
!!! ATATTGTATGGTGTTTTAAG+AGG + chr4_3:55097457-55097476 Msa0648630:CDS 25.0%
! AAGAATTTGGGATTGGAAAA+GGG + chr4_3:55094715-55094734 Msa0648630:CDS 30.0%
AAGGAAACTTGTAAATCATG+AGG + chr4_3:55094741-55094760 Msa0648630:CDS 30.0%
TTCTAATACTTTAGTTGCCT+TGG + chr4_3:55094828-55094847 Msa0648630:CDS 30.0%
GTTCTCTGATCAAATTGTTA+TGG + chr4_3:55094963-55094982 Msa0648630:intron 30.0%
!!! GGCTGTTTTAGTTTCATATA+AGG + chr4_3:55094999-55095018 Msa0648630:intron 30.0%
AAAAGAATGCTTCTCACTTA+TGG - chr4_3:55095114-55095133 None:intergenic 30.0%
!!! ATAAGTGAGAAGCATTCTTT+TGG + chr4_3:55095113-55095132 Msa0648630:intron 30.0%
! TTTGGTTGGATTTTGCAATA+TGG + chr4_3:55095131-55095150 Msa0648630:intron 30.0%
TAAACTTACTTTCGATGCAT+TGG + chr4_3:55095791-55095810 Msa0648630:intron 30.0%
AAACTTACTTTCGATGCATT+GGG + chr4_3:55095792-55095811 Msa0648630:intron 30.0%
!! ATTCACTTGTATGCTATTTC+AGG + chr4_3:55095975-55095994 Msa0648630:intron 30.0%
AGCAATAACAAAAGCTTGTA+AGG + chr4_3:55096244-55096263 Msa0648630:CDS 30.0%
AGAGACATTATGATCATTTC+TGG + chr4_3:55096324-55096343 Msa0648630:CDS 30.0%
!! GCAATGATTTTGACATAAAG+TGG - chr4_3:55096399-55096418 None:intergenic 30.0%
TTTGTTAGGGTAAAGTGTAA+TGG + chr4_3:55096496-55096515 Msa0648630:intron 30.0%
AATACCAAAATTAGGGGATA+TGG - chr4_3:55096614-55096633 None:intergenic 30.0%
CAGATGAATACCAAAATTAG+GGG - chr4_3:55096620-55096639 None:intergenic 30.0%
CACAGATGAATACCAAAATT+AGG - chr4_3:55096622-55096641 None:intergenic 30.0%
ATAGTATCACACCACATTTA+CGG - chr4_3:55096681-55096700 None:intergenic 30.0%
GTACGATTTACAAGAATACA+CGG + chr4_3:55097000-55097019 Msa0648630:intron 30.0%
TACGATTTACAAGAATACAC+GGG + chr4_3:55097001-55097020 Msa0648630:intron 30.0%
AAGATCAGAACCTAATCTTA+CGG + chr4_3:55097071-55097090 Msa0648630:intron 30.0%
! GTTTAAGATAAACGATATGC+AGG + chr4_3:55097128-55097147 Msa0648630:intron 30.0%
TTGTATTTGTCCATTCAACA+GGG + chr4_3:55097186-55097205 Msa0648630:intron 30.0%
GTGTCGGATTTAAGAAATAT+AGG + chr4_3:55097481-55097500 Msa0648630:CDS 30.0%
AATTTCAGATGCAGTCAAAT+TGG + chr4_3:55097561-55097580 Msa0648630:CDS 30.0%
TTTCCAATCCCAAATTCTTC+AGG - chr4_3:55094714-55094733 None:intergenic 35.0%
! GAAGAATTTGGGATTGGAAA+AGG + chr4_3:55094714-55094733 Msa0648630:CDS 35.0%
CTTGTAAATCATGAGGAAAG+AGG + chr4_3:55094748-55094767 Msa0648630:CDS 35.0%
ATTGTTATGGCTACTTACGT+TGG + chr4_3:55094976-55094995 Msa0648630:intron 35.0%
TTGTTATGGCTACTTACGTT+GGG + chr4_3:55094977-55094996 Msa0648630:intron 35.0%
ATTTCTTTCTGCACCTATCA+AGG + chr4_3:55095211-55095230 Msa0648630:CDS 35.0%
AGAATTCTCAAAGTGCAACA+TGG - chr4_3:55095337-55095356 None:intergenic 35.0%
! TTGAAATGCTTTGTTCAACC+TGG + chr4_3:55095762-55095781 Msa0648630:intron 35.0%
TGTATTGTGTATAGTCAGCA+AGG - chr4_3:55095878-55095897 None:intergenic 35.0%
! ACGCTAATATTTCTGTACTC+TGG + chr4_3:55096108-55096127 Msa0648630:intron 35.0%
!! ACCAACATACTTGTTGTTGA+AGG + chr4_3:55096191-55096210 Msa0648630:CDS 35.0%
ACCTTCAACAACAAGTATGT+TGG - chr4_3:55096195-55096214 None:intergenic 35.0%
ATCATAATGTCTCTCAATGC+AGG - chr4_3:55096318-55096337 None:intergenic 35.0%
TATTATTAGAGAACAAGGCC+AGG - chr4_3:55096464-55096483 None:intergenic 35.0%
TAGTATCACACCACATTTAC+GGG - chr4_3:55096680-55096699 None:intergenic 35.0%
TATGCGTGTGATGATAAGTA+TGG + chr4_3:55096707-55096726 Msa0648630:intron 35.0%
CCTAGTTATCTCTTATTACC+AGG - chr4_3:55096826-55096845 None:intergenic 35.0%
CCTGGTAATAAGAGATAACT+AGG + chr4_3:55096823-55096842 Msa0648630:intron 35.0%
!! GAGATAACTAGGTTTTGTGA+AGG + chr4_3:55096834-55096853 Msa0648630:intron 35.0%
!! TAACTAGGTTTTGTGAAGGA+TGG + chr4_3:55096838-55096857 Msa0648630:intron 35.0%
GATAGCCTAATCAAACTTGT+CGG + chr4_3:55096885-55096904 Msa0648630:intron 35.0%
CTTGTATTTGTCCATTCAAC+AGG + chr4_3:55097185-55097204 Msa0648630:intron 35.0%
!! AAAGCACTGTTTCTGTTACA+AGG + chr4_3:55097287-55097306 Msa0648630:CDS 35.0%
TATGCATCTGGCATATTGTA+TGG + chr4_3:55097445-55097464 Msa0648630:CDS 35.0%
TATAGGTACAATAGCAGCTA+AGG + chr4_3:55097498-55097517 Msa0648630:CDS 35.0%
AACTTGATACATCCGTTGTT+AGG + chr4_3:55097602-55097621 Msa0648630:CDS 35.0%
TGAGGAGTTCCTGAAGAATT+TGG + chr4_3:55094702-55094721 Msa0648630:CDS 40.0%
GAGGAGTTCCTGAAGAATTT+GGG + chr4_3:55094703-55094722 Msa0648630:CDS 40.0%
! GTTCCTGAAGAATTTGGGAT+TGG + chr4_3:55094708-55094727 Msa0648630:CDS 40.0%
TTTATAGCTGCAACCATCCA+TGG - chr4_3:55094788-55094807 None:intergenic 40.0%
ATACTTTAGTTGCCTTGGCA+AGG + chr4_3:55094833-55094852 Msa0648630:CDS 40.0%
TCGAGATCCTGCTATAAATG+TGG + chr4_3:55094873-55094892 Msa0648630:CDS 40.0%
TCCTGCTATAAATGTGGCAA+TGG + chr4_3:55094879-55094898 Msa0648630:CDS 40.0%
TGTTATGGCTACTTACGTTG+GGG + chr4_3:55094978-55094997 Msa0648630:intron 40.0%
!!! GTGAGAAGCATTCTTTTGGT+TGG + chr4_3:55095117-55095136 Msa0648630:intron 40.0%
GCTTAAACTAGAGAGGCAAT+GGG - chr4_3:55095420-55095439 None:intergenic 40.0%
TGCTTAAACTAGAGAGGCAA+TGG - chr4_3:55095421-55095440 None:intergenic 40.0%
GTGCATTGCTTAAACTAGAG+AGG - chr4_3:55095427-55095446 None:intergenic 40.0%
ATCGAGTTTATCCTCTACCT+CGG + chr4_3:55095712-55095731 Msa0648630:intron 40.0%
GTATTCCACAAGAATAACCG+AGG - chr4_3:55095732-55095751 None:intergenic 40.0%
AGTGAATCAACCAGAAGAGA+GGG - chr4_3:55095962-55095981 None:intergenic 40.0%
AAGTGAATCAACCAGAAGAG+AGG - chr4_3:55095963-55095982 None:intergenic 40.0%
CAAAAGCTTGTAAGGAAGCT+AGG + chr4_3:55096252-55096271 Msa0648630:CDS 40.0%
TGTAAGGAAGCTAGGAGTAA+CGG + chr4_3:55096260-55096279 Msa0648630:CDS 40.0%
AGCTTTCATCCTATTAAGCC+TGG + chr4_3:55096443-55096462 Msa0648630:intron 40.0%
! ACTGCCATATCCCCTAATTT+TGG + chr4_3:55096607-55096626 Msa0648630:intron 40.0%
AGTATCACACCACATTTACG+GGG - chr4_3:55096679-55096698 None:intergenic 40.0%
CGTGTGATGATAAGTATGGT+AGG + chr4_3:55096711-55096730 Msa0648630:intron 40.0%
! CAATTGCTTCATTTGAGACC+TGG + chr4_3:55096805-55096824 Msa0648630:intron 40.0%
!! TAGGTTTTGTGAAGGATGGA+AGG + chr4_3:55096842-55096861 Msa0648630:intron 40.0%
!! AGGTTTTGTGAAGGATGGAA+GGG + chr4_3:55096843-55096862 Msa0648630:intron 40.0%
TGGTTCCGACAAGTTTGATT+AGG - chr4_3:55096893-55096912 None:intergenic 40.0%
CCTACAATTTCCCTGTTGAA+TGG - chr4_3:55097199-55097218 None:intergenic 40.0%
CCATTCAACAGGGAAATTGT+AGG + chr4_3:55097196-55097215 Msa0648630:intron 40.0%
TGGGATTGGAAAAGGGAACA+AGG + chr4_3:55094722-55094741 Msa0648630:CDS 45.0%
! AGGTAGAGTTTTGCAAGCCA+TGG + chr4_3:55094768-55094787 Msa0648630:CDS 45.0%
! AGAGTTTTGCAAGCCATGGA+TGG + chr4_3:55094772-55094791 Msa0648630:CDS 45.0%
GCCATTGCCACATTTATAGC+AGG - chr4_3:55094883-55094902 None:intergenic 45.0%
GCTATAAATGTGGCAATGGC+TGG + chr4_3:55094883-55094902 Msa0648630:CDS 45.0%
ATCTATTGGGTGGCTTCTAC+AGG + chr4_3:55094920-55094939 Msa0648630:CDS 45.0%
AGAGAACAGTGCAGTTACGA+GGG - chr4_3:55094950-55094969 None:intergenic 45.0%
CCAGTTGTTGCATCCTTGAT+AGG - chr4_3:55095227-55095246 None:intergenic 45.0%
CCTATCAAGGATGCAACAAC+TGG + chr4_3:55095224-55095243 Msa0648630:CDS 45.0%
CTCAAAGTGCAACATGGAAG+TGG - chr4_3:55095331-55095350 None:intergenic 45.0%
TGCGTGTAGCATACCATTGA+TGG - chr4_3:55095629-55095648 None:intergenic 45.0%
GGATAAACTCGATGCTCATC+AGG - chr4_3:55095705-55095724 None:intergenic 45.0%
CACAAGAATAACCGAGGTAG+AGG - chr4_3:55095726-55095745 None:intergenic 45.0%
CTCTACCTCGGTTATTCTTG+TGG + chr4_3:55095724-55095743 Msa0648630:intron 45.0%
! TATTTCTGTACTCTGGTCCC+AGG + chr4_3:55096115-55096134 Msa0648630:intron 45.0%
ATTTCTGTACTCTGGTCCCA+GGG + chr4_3:55096116-55096135 Msa0648630:intron 45.0%
TGTCAACTTCGACACTTCCT+TGG + chr4_3:55096151-55096170 Msa0648630:CDS 45.0%
CTTAGAAACTGCACTTGCCA+AGG - chr4_3:55096171-55096190 None:intergenic 45.0%
AGAACAAGGCCAGGCTTAAT+AGG - chr4_3:55096455-55096474 None:intergenic 45.0%
TCTAAGAGACCCCGTAAATG+TGG + chr4_3:55096667-55096686 Msa0648630:intron 45.0%
!! GGTTTTGTGAAGGATGGAAG+GGG + chr4_3:55096844-55096863 Msa0648630:intron 45.0%
CACGAGACAACCGTAAGATT+AGG - chr4_3:55097084-55097103 None:intergenic 45.0%
! AATTTTCGCGAACGCTGATG+AGG + chr4_3:55097234-55097253 Msa0648630:CDS 45.0%
!! CATCGGTAACGGATACTAGA+GGG - chr4_3:55097330-55097349 None:intergenic 45.0%
TTACGCCTATGTAAGAGCCT+CGG - chr4_3:55097357-55097376 None:intergenic 45.0%
GGCTCTTACATAGGCGTAAA+AGG + chr4_3:55097358-55097377 Msa0648630:CDS 45.0%
!!! TGGTGTTTTAAGAGGCGTGT+CGG + chr4_3:55097465-55097484 Msa0648630:CDS 45.0%
TCCGTTGTTAGGTCCGATAT+CGG + chr4_3:55097613-55097632 Msa0648630:CDS 45.0%
ACCGATATCGGACCTAACAA+CGG - chr4_3:55097617-55097636 None:intergenic 45.0%
!!! TTACATTTATTTTAAATTTT+AGG + chr4_3:55095162-55095181 Msa0648630:intron 5.0%
!!! TACATTTATTTTAAATTTTA+GGG + chr4_3:55095163-55095182 Msa0648630:intron 5.0%
! CTTCTCTGGCACAGTTGATG+AGG + chr4_3:55094684-55094703 Msa0648630:CDS 50.0%
TGGTTGCAGCTATAAAGCCG+CGG + chr4_3:55094792-55094811 Msa0648630:CDS 50.0%
TTAGTTGCCTTGGCAAGGCT+TGG + chr4_3:55094838-55094857 Msa0648630:CDS 50.0%
AGTGTGGCGAGCGATCTATT+GGG + chr4_3:55094907-55094926 Msa0648630:CDS 50.0%
CAGAGAACAGTGCAGTTACG+AGG - chr4_3:55094951-55094970 None:intergenic 50.0%
AGCATTGTGCGTTGAGCATC+TGG - chr4_3:55095272-55095291 None:intergenic 50.0%
ACGCACAATGCTTGCATACC+AGG + chr4_3:55095280-55095299 Msa0648630:CDS 50.0%
AGCTAGGAGTAACGGTGCTT+TGG + chr4_3:55096268-55096287 Msa0648630:CDS 50.0%
TTGTGAAGGATGGAAGGGGA+AGG + chr4_3:55096848-55096867 Msa0648630:intron 50.0%
AAGGATGGAAGGGGAAGGAA+AGG + chr4_3:55096853-55096872 Msa0648630:intron 50.0%
!! CCATCGGTAACGGATACTAG+AGG - chr4_3:55097331-55097350 None:intergenic 50.0%
CCTCTAGTATCCGTTACCGA+TGG + chr4_3:55097328-55097347 Msa0648630:CDS 50.0%
TCTACCGGAACACATGGAGA+AGG - chr4_3:55097403-55097422 None:intergenic 50.0%
CAAGTGTCTACCGGAACACA+TGG - chr4_3:55097409-55097428 None:intergenic 50.0%
TGTGTTCCGGTAGACACTTG+TGG + chr4_3:55097409-55097428 Msa0648630:CDS 50.0%
! GCTGGTGATGCATATGCATC+TGG + chr4_3:55097433-55097452 Msa0648630:CDS 50.0%
TTGTTGCACAGCAGGGAACA+AGG + chr4_3:55097533-55097552 Msa0648630:CDS 50.0%
AGAAAGAGATCCACCAGCCG+CGG - chr4_3:55094812-55094831 None:intergenic 55.0%
CAGTGTGGCGAGCGATCTAT+TGG + chr4_3:55094906-55094925 Msa0648630:CDS 55.0%
TTCTCACTCGCCCTCTCTTC+TGG + chr4_3:55095949-55095968 Msa0648630:intron 55.0%
GACAGTTGACGATGTGCCCT+GGG - chr4_3:55096135-55096154 None:intergenic 55.0%
TGACAGTTGACGATGTGCCC+TGG - chr4_3:55096136-55096155 None:intergenic 55.0%
GTAAGAGCCTCGGAGACCAT+CGG - chr4_3:55097347-55097366 None:intergenic 55.0%
GGTCTCCGAGGCTCTTACAT+AGG + chr4_3:55097349-55097368 Msa0648630:CDS 55.0%
CCGGAACACATGGAGAAGGA+GGG - chr4_3:55097399-55097418 None:intergenic 55.0%
CCCTCCTTCTCCATGTGTTC+CGG + chr4_3:55097396-55097415 Msa0648630:CDS 55.0%
ACCGGAACACATGGAGAAGG+AGG - chr4_3:55097400-55097419 None:intergenic 55.0%
CCAGCACCACAAGTGTCTAC+CGG - chr4_3:55097418-55097437 None:intergenic 55.0%
AGCCACTGTTGTTGCACAGC+AGG + chr4_3:55097525-55097544 Msa0648630:CDS 55.0%
GCCACTGTTGTTGCACAGCA+GGG + chr4_3:55097526-55097545 Msa0648630:CDS 55.0%
TCCCTGCTGTGCAACAACAG+TGG - chr4_3:55097530-55097549 None:intergenic 55.0%
TGCAGCTATAAAGCCGCGGC+TGG + chr4_3:55094796-55094815 Msa0648630:CDS 60.0%
AGCTATAAAGCCGCGGCTGG+TGG + chr4_3:55094799-55094818 Msa0648630:CDS 60.0%
GTTGCCTTGGCAAGGCTTGG+AGG + chr4_3:55094841-55094860 Msa0648630:CDS 60.0%
TGTGGCAATGGCTGGCAGTG+TGG + chr4_3:55094891-55094910 Msa0648630:CDS 60.0%
GTGGCGAGCGATCTATTGGG+TGG + chr4_3:55094910-55094929 Msa0648630:CDS 60.0%
TCCGTTACCGATGGTCTCCG+AGG + chr4_3:55097337-55097356 Msa0648630:CDS 60.0%
GCCTCGGAGACCATCGGTAA+CGG - chr4_3:55097341-55097360 None:intergenic 60.0%
CCGGTAGACACTTGTGGTGC+TGG + chr4_3:55097415-55097434 Msa0648630:CDS 60.0%
GCGACCTCCAAGCCTTGCCA+AGG - chr4_3:55094848-55094867 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55094679 55097645 55094679 ID=Msa0648630;Name=Msa0648630
chr4_3 mRNA 55094679 55097645 55094679 ID=Msa0648630-mRNA-1;Parent=Msa0648630;Name=Msa0648630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|342
chr4_3 exon 55094679 55094941 55094679 ID=Msa0648630-mRNA-1:exon:14034;Parent=Msa0648630-mRNA-1
chr4_3 exon 55095184 55095301 55095184 ID=Msa0648630-mRNA-1:exon:14035;Parent=Msa0648630-mRNA-1
chr4_3 exon 55096137 55096345 55096137 ID=Msa0648630-mRNA-1:exon:14036;Parent=Msa0648630-mRNA-1
chr4_3 exon 55097207 55097645 55097207 ID=Msa0648630-mRNA-1:exon:14037;Parent=Msa0648630-mRNA-1
chr4_3 CDS 55094679 55094941 55094679 ID=Msa0648630-mRNA-1:cds;Parent=Msa0648630-mRNA-1
chr4_3 CDS 55095184 55095301 55095184 ID=Msa0648630-mRNA-1:cds;Parent=Msa0648630-mRNA-1
chr4_3 CDS 55096137 55096345 55096137 ID=Msa0648630-mRNA-1:cds;Parent=Msa0648630-mRNA-1
chr4_3 CDS 55097207 55097645 55097207 ID=Msa0648630-mRNA-1:cds;Parent=Msa0648630-mRNA-1
Gene Sequence

>Msa0648630

GTAGACTTCTCTGGCACAGTTGATGAGGAGTTCCTGAAGAATTTGGGATTGGAAAAGGGAACAAGGAAACTTGTAAATCATGAGGAAAGAGGTAGAGTTTTGCAAGCCATGGATGGTTGCAGCTATAAAGCCGCGGCTGGTGGATCTCTTTCTAATACTTTAGTTGCCTTGGCAAGGCTTGGAGGTCGCTCTCTTCGAGATCCTGCTATAAATGTGGCAATGGCTGGCAGTGTGGCGAGCGATCTATTGGGTGGCTTCTACAGGGAAAAATTACGGCGAGCAAATGTGCAATTTCTTTCTGCACCTATCAAGGATGCAACAACTGGAACTGTTATAGTTCTCACAACACCAGATGCTCAACGCACAATGCTTGCATACCAGGGCACATCGTCAACTGTCAACTTCGACACTTCCTTGGCAAGTGCAGTTTCTAAGACCAACATACTTGTTGTTGAAGGTTATTTATTTGAACTTCCTGATACTATTAAAGCAATAACAAAAGCTTGTAAGGAAGCTAGGAGTAACGGTGCTTTGGTTGCAGTAACAGCTTCAGATGTTACCTGCATTGAGAGACATTATGATCATTTCTGGGAAATTGTAGGCAATTATGCAGATTTAATTTTCGCGAACGCTGATGAGGCGAGAGCTCTATGTAATTTTGATGCAAAGGAAAGCACTGTTTCTGTTACAAGGTATCTAAGTCAGTTTGTCCCTCTAGTATCCGTTACCGATGGTCTCCGAGGCTCTTACATAGGCGTAAAAGGTGAAGCAGTATACATCCCTCCTTCTCCATGTGTTCCGGTAGACACTTGTGGTGCTGGTGATGCATATGCATCTGGCATATTGTATGGTGTTTTAAGAGGCGTGTCGGATTTAAGAAATATAGGTACAATAGCAGCTAAGGTTGCAGCCACTGTTGTTGCACAGCAGGGAACAAGGCTTAGAATTTCAGATGCAGTCAAATTGGCCGAATCTTTTGAATTTCAACTTGATACATCCGTTGTTAGGTCCGATATCGGTACTGTTTAA

Protein sequence

>Msa0648630

VDFSGTVDEEFLKNLGLEKGTRKLVNHEERGRVLQAMDGCSYKAAAGGSLSNTLVALARLGGRSLRDPAINVAMAGSVASDLLGGFYREKLRRANVQFLSAPIKDATTGTVIVLTTPDAQRTMLAYQGTSSTVNFDTSLASAVSKTNILVVEGYLFELPDTIKAITKACKEARSNGALVAVTASDVTCIERHYDHFWEIVGNYADLIFANADEARALCNFDAKESTVSVTRYLSQFVPLVSVTDGLRGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGVLRGVSDLRNIGTIAAKVAATVVAQQGTRLRISDAVKLAESFEFQLDTSVVRSDIGTV*