AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1257030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257030 MtrunA17_Chr4g0055631 97.727 220 5 0 3 222 4 223 1.28e-158 437
Msa1257030 MtrunA17_Chr5g0399741 71.728 191 54 0 8 198 6 196 1.06e-102 296
Msa1257030 MtrunA17_Chr7g0230901 41.026 234 109 3 8 213 6 238 1.87e-59 187
Msa1257030 MtrunA17_Chr5g0399141 40.083 242 114 4 1 213 2 241 1.01e-58 185
Msa1257030 MtrunA17_Chr4g0012521 40.598 234 110 3 8 213 6 238 2.40e-58 184
Msa1257030 MtrunA17_Chr4g0056231 39.149 235 113 3 8 213 7 240 2.76e-55 176
Msa1257030 MtrunA17_Chr4g0066671 53.788 132 58 1 1 132 1 129 1.06e-41 143
Msa1257030 MtrunA17_Chr4g0012141 41.111 180 95 2 8 183 18 190 4.89e-40 136
Msa1257030 MtrunA17_Chr4g0012151 40.571 175 100 2 8 182 24 194 9.95e-37 129
Msa1257030 MtrunA17_Chr1g0191261 48.780 123 63 0 8 130 6 128 4.72e-33 123
Msa1257030 MtrunA17_Chr4g0012291 45.902 122 66 0 8 129 23 144 1.24e-31 115
Msa1257030 MtrunA17_Chr4g0012091 37.975 158 94 2 32 185 16 173 7.39e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257030 AT5G47180.1 59.276 221 86 3 1 219 1 219 4.87e-92 269
Msa1257030 AT5G47180.2 59.276 221 86 3 1 219 1 219 4.87e-92 269
Msa1257030 AT2G45140.2 42.157 204 108 2 4 197 1 204 1.09e-52 169
Msa1257030 AT2G45140.1 39.367 221 107 3 4 197 1 221 7.18e-49 160
Msa1257030 AT4G00170.1 40.336 238 114 6 1 212 1 236 1.23e-47 157
Msa1257030 AT3G60600.1 38.249 217 107 4 8 197 22 238 1.84e-45 152
Msa1257030 AT3G60600.2 40.964 166 98 0 8 173 22 187 2.01e-40 138
Msa1257030 AT3G60600.3 37.198 207 112 4 8 200 22 224 6.69e-40 137
Msa1257030 AT4G00170.2 39.234 209 101 5 30 212 1 209 5.81e-38 131
Msa1257030 AT1G51270.13 41.958 143 83 0 4 146 1 143 5.49e-37 132
Msa1257030 AT1G51270.12 41.958 143 83 0 4 146 1 143 5.49e-37 132
Msa1257030 AT1G51270.14 41.958 143 83 0 4 146 1 143 5.49e-37 132
Msa1257030 AT1G51270.11 41.958 143 83 0 4 146 1 143 5.49e-37 132
Msa1257030 AT1G51270.5 41.844 141 82 0 6 146 4 144 2.63e-36 131
Msa1257030 AT1G51270.15 41.958 143 83 0 4 146 1 143 5.79e-36 132
Msa1257030 AT1G51270.8 41.958 143 83 0 4 146 172 314 6.15e-36 132
Msa1257030 AT1G51270.8 37.313 134 84 0 6 139 4 137 1.36e-29 115
Msa1257030 AT1G51270.2 41.958 143 83 0 4 146 172 314 6.15e-36 132
Msa1257030 AT1G51270.2 37.313 134 84 0 6 139 4 137 1.36e-29 115
Msa1257030 AT1G51270.1 41.958 143 83 0 4 146 172 314 1.36e-35 132
Msa1257030 AT1G51270.1 37.313 134 84 0 6 139 4 137 2.09e-29 115
Msa1257030 AT1G51270.9 41.958 143 83 0 4 146 124 266 1.69e-35 132
Msa1257030 AT1G51270.9 37.500 88 55 0 52 139 2 89 1.37e-16 78.6
Msa1257030 AT1G51270.6 41.958 143 83 0 4 146 124 266 1.69e-35 132
Msa1257030 AT1G51270.6 37.500 88 55 0 52 139 2 89 1.37e-16 78.6
Msa1257030 AT1G51270.7 41.958 143 83 0 4 146 124 266 1.69e-35 132
Msa1257030 AT1G51270.7 37.500 88 55 0 52 139 2 89 1.37e-16 78.6
Msa1257030 AT1G51270.10 41.958 143 83 0 4 146 124 266 1.69e-35 132
Msa1257030 AT1G51270.10 37.500 88 55 0 52 139 2 89 1.37e-16 78.6
Msa1257030 AT1G51270.3 41.958 143 83 0 4 146 172 314 2.36e-35 132
Msa1257030 AT1G51270.3 37.313 134 84 0 6 139 4 137 3.00e-29 115
Msa1257030 AT2G23830.1 44.531 128 71 0 5 132 3 130 2.17e-33 117
Msa1257030 AT1G08820.1 46.154 130 69 1 8 136 5 134 7.74e-33 122
Msa1257030 AT1G08820.5 46.154 130 69 1 8 136 5 134 7.74e-33 122
Msa1257030 AT1G08820.3 46.154 130 69 1 8 136 5 134 7.74e-33 122
Msa1257030 AT1G08820.4 46.154 130 69 1 8 136 5 134 7.74e-33 122
Msa1257030 AT1G08820.2 46.154 130 69 1 8 136 5 134 7.74e-33 122
Msa1257030 AT1G51270.4 39.189 74 45 0 73 146 1 74 5.81e-12 64.7

Find 70 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATGTTTGTGGGCCTTAT+TGG 0.184699 8_2:+57375097 Msa1257030:CDS
CTTCACCTTTGCCATGTTTG+TGG 0.310218 8_2:+57375087 Msa1257030:CDS
CCCTTCGCCATGACTACTAT+TGG 0.321343 8_2:+57371803 Msa1257030:exon
TTCACCTTTGCCATGTTTGT+GGG 0.330121 8_2:+57375088 Msa1257030:CDS
TTCCTCCTTCAATTGTTGTA+AGG 0.345811 8_2:-57374631 None:intergenic
GGCCTTATTGGATTCTTGTT+TGG 0.353608 8_2:+57375109 Msa1257030:CDS
GAGGATATTCTCGTTGGGCT+TGG 0.386515 8_2:-57373480 None:intergenic
ACGAAGCTCGGGAGGATTGA+TGG 0.392472 8_2:-57371840 None:intergenic
AGATCATCAACATTGGTGTT+TGG 0.401970 8_2:-57373553 None:intergenic
ACAAAATCTTGATACTTCTT+CGG 0.415832 8_2:+57373788 Msa1257030:CDS
GATATTCTCGTTGGGCTTGG+AGG 0.421372 8_2:-57373477 None:intergenic
AACCAAACAAGAATCCAATA+AGG 0.425340 8_2:-57375111 None:intergenic
TTATCTCTGCATTGCATGCC+AGG 0.428776 8_2:-57373502 None:intergenic
AGGGAATCGTGCATCATTAG+AGG 0.428838 8_2:+57372873 Msa1257030:CDS
TGTTGTGTGCCCGCTGTTTG+TGG 0.433233 8_2:-57371634 None:intergenic
GAAACAAACACAACAAAGAC+GGG 0.433641 8_2:-57371609 None:intergenic
ATTAGCTCTCTTACAGTATC+CGG 0.437918 8_2:-57373580 None:intergenic
GGATGTATCACACCAGTGTT+AGG 0.447168 8_2:-57372849 None:intergenic
GCGGCATCTGCAACAGGAAC+TGG 0.455063 8_2:+57374677 Msa1257030:CDS
ACAAGCGCGGCATCTGCAAC+AGG 0.465076 8_2:+57374671 Msa1257030:CDS
TTGCAGTTTAATAAGGATAG+TGG 0.473047 8_2:+57373672 Msa1257030:intron
GTTCATGTTACCAGTTGAGT+TGG 0.474172 8_2:+57372609 Msa1257030:intron
ATGAGCAGGACATGCTGAAA+AGG 0.479286 8_2:+57375032 Msa1257030:intron
AAGAAACCGTAGAAGTGATC+CGG 0.479348 8_2:+57375057 Msa1257030:CDS
GCCAGGAGGATATTCTCGTT+GGG 0.485690 8_2:-57373485 None:intergenic
ACACTGGTGTGATACATCCT+AGG 0.492945 8_2:+57372853 Msa1257030:CDS
TGCCAGGAGGATATTCTCGT+TGG 0.494034 8_2:-57373486 None:intergenic
TCATCAGATTCAGAGCGGTT+CGG 0.505626 8_2:+57371556 None:intergenic
GTGCTTCCTTGAGGTGAGGT+AGG 0.512970 8_2:-57373738 None:intergenic
TCCAATAAGGCCCACAAACA+TGG 0.517835 8_2:-57375098 None:intergenic
AAACATAATAAGCAAAGTAT+TGG 0.518344 8_2:+57371669 Msa1257030:five_prime_UTR
GCCCAACGAGAATATCCTCC+TGG 0.527180 8_2:+57373484 Msa1257030:CDS
TCAAGCCTTACAACAATTGA+AGG 0.530907 8_2:+57374626 Msa1257030:CDS
CATACATTGAAAACGAAGCT+CGG 0.539797 8_2:-57371852 None:intergenic
TGAATTTCCAATAGTAGTCA+TGG 0.542130 8_2:-57371810 None:intergenic
CACAAACATGGCAAAGGTGA+AGG 0.543703 8_2:-57375086 None:intergenic
TTGTTTCCGCCACAAACAGC+GGG 0.550499 8_2:+57371625 Msa1257030:five_prime_UTR
ATATTCTCGTTGGGCTTGGA+GGG 0.552192 8_2:-57373476 None:intergenic
ATACATTGAAAACGAAGCTC+GGG 0.552814 8_2:-57371851 None:intergenic
AGAAGCCCGGATCACTTCTA+CGG 0.559564 8_2:-57375063 None:intergenic
GGAAACAAACACAACAAAGA+CGG 0.561138 8_2:-57371610 None:intergenic
TCATCTCTTGTGCTTCCTTG+AGG 0.563962 8_2:-57373747 None:intergenic
TCCAATAGTAGTCATGGCGA+AGG 0.569119 8_2:-57371804 None:intergenic
AGAAACCGTAGAAGTGATCC+GGG 0.571770 8_2:+57375058 Msa1257030:CDS
TGTTACCAGTTGAGTTGGAG+AGG 0.575278 8_2:+57372614 Msa1257030:intron
CTAATGATGCACGATTCCCT+AGG 0.584489 8_2:-57372870 None:intergenic
TTTGTTTCCGCCACAAACAG+CGG 0.585704 8_2:+57371624 Msa1257030:five_prime_UTR
GCAAAGGTGAAGGAGAAGCC+CGG 0.586085 8_2:-57375076 None:intergenic
TCTTGTGCTTCCTTGAGGTG+AGG 0.587034 8_2:-57373742 None:intergenic
TCTCATACAAACTACAACAG+TGG 0.601386 8_2:+57373528 Msa1257030:CDS
CAATGTTGATGATCTTCCGC+CGG 0.604586 8_2:+57373561 Msa1257030:CDS
GTCTCTCCTACCTCACCTCA+AGG 0.604827 8_2:+57373732 Msa1257030:CDS
CATTGAAAACGAAGCTCGGG+AGG 0.607960 8_2:-57371848 None:intergenic
GGTCGTACAAAGTACTTAGA+CGG 0.609617 8_2:-57372828 None:intergenic
CGGCGGAAGATCATCAACAT+TGG 0.616344 8_2:-57373560 None:intergenic
AGTTTAATAAGGATAGTGGA+AGG 0.618342 8_2:+57373676 Msa1257030:intron
AAAGTACTTAGACGGTGAAG+TGG 0.620351 8_2:-57372820 None:intergenic
TACTTTGTACGACCTAACAC+TGG 0.629880 8_2:+57372837 Msa1257030:CDS
TGTGTGCCCGCTGTTTGTGG+CGG 0.634754 8_2:-57371631 None:intergenic
CACTGGTGTGATACATCCTA+GGG 0.636942 8_2:+57372854 Msa1257030:CDS
AGCTCTCTTACAGTATCCGG+CGG 0.643569 8_2:-57373577 None:intergenic
ATGCCGCGCTTGTCTGACAG+AGG 0.647048 8_2:-57374661 None:intergenic
ACAGAATGAAATCATTGTGT+AGG 0.648495 8_2:-57375163 None:intergenic
GAATGAAATCATTGTGTAGG+TGG 0.650478 8_2:-57375160 None:intergenic
CCAATAGTAGTCATGGCGAA+GGG 0.652991 8_2:-57371803 None:intergenic
AAGGCCCACAAACATGGCAA+AGG 0.655384 8_2:-57375092 None:intergenic
AAACAAACACAACAAAGACG+GGG 0.659895 8_2:-57371608 None:intergenic
AGCCTTACAACAATTGAAGG+AGG 0.661559 8_2:+57374629 Msa1257030:CDS
ATGCCTCTGTCAGACAAGCG+CGG 0.683892 8_2:+57374658 Msa1257030:CDS
TCTCTGCATTGCATGCCAGG+AGG 0.728147 8_2:-57373499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTCTATTAGAAATTT+TGG + chr8_2:57371779-57371798 Msa1257030:intron 10.0%
!!! TTTGTTTTTAGTTTTGTTAT+GGG - chr8_2:57371585-57371604 None:intergenic 15.0%
!! AGAATAAAAGAGAAATTAAA+TGG - chr8_2:57371768-57371787 None:intergenic 15.0%
!!! TTTCAAATTTTTACTATACA+TGG - chr8_2:57372234-57372253 None:intergenic 15.0%
!!! ACATTTTTCATTTACATAAA+GGG - chr8_2:57372458-57372477 None:intergenic 15.0%
!!! AACATTTTTCATTTACATAA+AGG - chr8_2:57372459-57372478 None:intergenic 15.0%
!! TAAATTAATGTATACTTCTT+GGG - chr8_2:57373052-57373071 None:intergenic 15.0%
!! TTAAATTAATGTATACTTCT+TGG - chr8_2:57373053-57373072 None:intergenic 15.0%
!! TGATTAAATAGATCTATATT+AGG + chr8_2:57373096-57373115 Msa1257030:intron 15.0%
!! GATTAAATAGATCTATATTA+GGG + chr8_2:57373097-57373116 Msa1257030:intron 15.0%
!!! TTTTGTGATTAAAAATGAAT+AGG + chr8_2:57373208-57373227 Msa1257030:intron 15.0%
!! TTGAAAATAAAAATTGATCA+AGG + chr8_2:57373634-57373653 Msa1257030:intron 15.0%
!!! GTTTGTTTTTAGTTTTGTTA+TGG - chr8_2:57371586-57371605 None:intergenic 20.0%
!! AAACATAATAAGCAAAGTAT+TGG + chr8_2:57371669-57371688 Msa1257030:five_prime_UTR 20.0%
!! AATAACACTAACATAGATAA+TGG - chr8_2:57371945-57371964 None:intergenic 20.0%
!! GTTATTATTAATCACAGTTT+AGG + chr8_2:57371959-57371978 Msa1257030:intron 20.0%
!!! GAAACATTTTTCATAAGTAT+CGG + chr8_2:57372350-57372369 Msa1257030:intron 20.0%
!! ATTTATATCCAATTCTTATG+TGG + chr8_2:57372576-57372595 Msa1257030:intron 20.0%
!!! CAAACTTATTCTTTTTGTAA+AGG + chr8_2:57372721-57372740 Msa1257030:intron 20.0%
!!! TTGATAATTTGAATTGTTGT+TGG + chr8_2:57372947-57372966 Msa1257030:intron 20.0%
!!! TGATAATTTGAATTGTTGTT+GGG + chr8_2:57372948-57372967 Msa1257030:intron 20.0%
!!! GTCATTTTTTCATTACAAAA+TGG + chr8_2:57373150-57373169 Msa1257030:intron 20.0%
!! ATAATATTACCAAATTTGAG+AGG - chr8_2:57373883-57373902 None:intergenic 20.0%
!!! AATTAAGTAATGGATTTGTA+AGG - chr8_2:57374569-57374588 None:intergenic 20.0%
!! GTTCAATCTAAATTAAGTAA+TGG - chr8_2:57374579-57374598 None:intergenic 20.0%
!! ATTTGTGTTAAGATTTGATT+TGG + chr8_2:57374744-57374763 Msa1257030:intron 20.0%
!! TCAATATGAATTATGATTTG+AGG + chr8_2:57374901-57374920 Msa1257030:intron 20.0%
! AAAACTAAAGCAATTCTCAA+GGG - chr8_2:57372156-57372175 None:intergenic 25.0%
!! TTTCAAACTTTTACCATGAA+TGG - chr8_2:57372274-57372293 None:intergenic 25.0%
! TAGTATAACCACATAAGAAT+TGG - chr8_2:57372587-57372606 None:intergenic 25.0%
! TACAAATGAATACGTCTAAA+AGG - chr8_2:57373015-57373034 None:intergenic 25.0%
! TATTCATTTGTACAAAGTAC+TGG + chr8_2:57373023-57373042 Msa1257030:intron 25.0%
!! CATATTTTCTTGAACCAAAT+AGG - chr8_2:57373123-57373142 None:intergenic 25.0%
! TCATTACAAAATGGCTATTT+AGG + chr8_2:57373159-57373178 Msa1257030:intron 25.0%
!! TTTTTGCTTGCAGTTTAATA+AGG + chr8_2:57373665-57373684 Msa1257030:intron 25.0%
! ACAAAATCTTGATACTTCTT+CGG + chr8_2:57373788-57373807 Msa1257030:CDS 25.0%
! ACTTATAACTGATATCTCAA+AGG - chr8_2:57373845-57373864 None:intergenic 25.0%
! TTTAATCTTCCTCTCAAATT+TGG + chr8_2:57373871-57373890 Msa1257030:intron 25.0%
! GAAAGAAAACTCTAATTCTT+GGG + chr8_2:57374101-57374120 Msa1257030:intron 25.0%
!! AATTTTACTCTTCATTTGAC+TGG + chr8_2:57374329-57374348 Msa1257030:intron 25.0%
! CTCAATCAGTATATAATCAA+TGG - chr8_2:57374355-57374374 None:intergenic 25.0%
!! CATTGATTATATACTGATTG+AGG + chr8_2:57374353-57374372 Msa1257030:intron 25.0%
! AAGTTTAGTCATGATATACT+TGG - chr8_2:57374780-57374799 None:intergenic 25.0%
!!! AGTTTTGGAATTTTGTTATG+AGG - chr8_2:57374844-57374863 None:intergenic 25.0%
! ACAAAATTCCAAAACTTAGA+AGG + chr8_2:57374848-57374867 Msa1257030:intron 25.0%
! CAAAATTCCAAAACTTAGAA+GGG + chr8_2:57374849-57374868 Msa1257030:intron 25.0%
!! TAATTTTCCCTTCTAAGTTT+TGG - chr8_2:57374859-57374878 None:intergenic 25.0%
! AGATGACTTATATACAATAC+AGG + chr8_2:57374878-57374897 Msa1257030:intron 25.0%
TGAATTTCCAATAGTAGTCA+TGG - chr8_2:57371813-57371832 None:intergenic 30.0%
TTTCTTCTTAACCACTCTTT+AGG + chr8_2:57371889-57371908 Msa1257030:intron 30.0%
! TAATTTGTCCTCGAATCATA+TGG + chr8_2:57372044-57372063 Msa1257030:intron 30.0%
CAGTTACTTATAGCAGAAAT+TGG + chr8_2:57372129-57372148 Msa1257030:intron 30.0%
GAAAACTAAAGCAATTCTCA+AGG - chr8_2:57372157-57372176 None:intergenic 30.0%
TATTAACATGACACCATTCA+TGG + chr8_2:57372258-57372277 Msa1257030:intron 30.0%
!! AGAGTACTTCATTGCTTTTA+AGG + chr8_2:57372672-57372691 Msa1257030:CDS 30.0%
! TTTTGTAAAGGCTTTTATGC+CGG + chr8_2:57372733-57372752 Msa1257030:intron 30.0%
AAAGCAAAATAACATGACAG+TGG - chr8_2:57372787-57372806 None:intergenic 30.0%
!!! CATGTTATTTTGCTTTTGCT+AGG + chr8_2:57372791-57372810 Msa1257030:intron 30.0%
!! TGCATTTTGTGAGCTTTAAT+CGG - chr8_2:57373304-57373323 None:intergenic 30.0%
TAGATGCTAATACTACACAA+TGG - chr8_2:57373425-57373444 None:intergenic 30.0%
TTGCAGTTTAATAAGGATAG+TGG + chr8_2:57373672-57373691 Msa1257030:intron 30.0%
!! AGTTTAATAAGGATAGTGGA+AGG + chr8_2:57373676-57373695 Msa1257030:intron 30.0%
!!! AGAAGTATCAAGATTTTGTG+TGG - chr8_2:57373787-57373806 None:intergenic 30.0%
AAGCCATAGAAATGAGATAA+TGG + chr8_2:57373980-57373999 Msa1257030:intron 30.0%
AGCCATAGAAATGAGATAAT+GGG + chr8_2:57373981-57374000 Msa1257030:intron 30.0%
!! ATGAGATAATGGGGTTTATT+TGG + chr8_2:57373991-57374010 Msa1257030:intron 30.0%
!! ACTTTCTTTACTTTTCCACT+TGG - chr8_2:57374026-57374045 None:intergenic 30.0%
ATCACTCTCATCTTTACAAT+AGG + chr8_2:57374059-57374078 Msa1257030:intron 30.0%
! AATTAGAGTTTTCTTTCCCA+GGG - chr8_2:57374098-57374117 None:intergenic 30.0%
GGAAAGAAAACTCTAATTCT+TGG + chr8_2:57374100-57374119 Msa1257030:intron 30.0%
!! TAATTCTTGGGTTTTATGAC+AGG + chr8_2:57374113-57374132 Msa1257030:intron 30.0%
TCAAGTAACATACACATTAG+TGG - chr8_2:57374172-57374191 None:intergenic 30.0%
! ACTAATGTGTATGTTACTTG+AGG + chr8_2:57374171-57374190 Msa1257030:intron 30.0%
AACTTAGGATATAGCAGATA+TGG + chr8_2:57374201-57374220 Msa1257030:intron 30.0%
ACTTAGGATATAGCAGATAT+GGG + chr8_2:57374202-57374221 Msa1257030:intron 30.0%
TTTAGCTGGGATTATTTGTT+AGG + chr8_2:57374296-57374315 Msa1257030:intron 30.0%
! TTAGCTGGGATTATTTGTTA+GGG + chr8_2:57374297-57374316 Msa1257030:intron 30.0%
! TTATATACTGATTGAGGTGT+AGG + chr8_2:57374359-57374378 Msa1257030:intron 30.0%
! TATATACTGATTGAGGTGTA+GGG + chr8_2:57374360-57374379 Msa1257030:intron 30.0%
GGACATAAATTATAGTCACA+CGG + chr8_2:57374438-57374457 Msa1257030:intron 30.0%
GACACAAAATATGTAATACG+AGG - chr8_2:57374538-57374557 None:intergenic 30.0%
!! AATTTTGTTATGAGGTAGAG+TGG - chr8_2:57374836-57374855 None:intergenic 30.0%
ATCAAGAAAACATGTGGATT+TGG - chr8_2:57375014-57375033 None:intergenic 30.0%
AACCAAACAAGAATCCAATA+AGG - chr8_2:57375114-57375133 None:intergenic 30.0%
AAACAAACACAACAAAGACG+GGG - chr8_2:57371611-57371630 None:intergenic 35.0%
GAAACAAACACAACAAAGAC+GGG - chr8_2:57371612-57371631 None:intergenic 35.0%
GGAAACAAACACAACAAAGA+CGG - chr8_2:57371613-57371632 None:intergenic 35.0%
TTGATATCGCAACGAGAAAA+GGG - chr8_2:57371728-57371747 None:intergenic 35.0%
TTTGATATCGCAACGAGAAA+AGG - chr8_2:57371729-57371748 None:intergenic 35.0%
ATACATTGAAAACGAAGCTC+GGG - chr8_2:57371854-57371873 None:intergenic 35.0%
CATACATTGAAAACGAAGCT+CGG - chr8_2:57371855-57371874 None:intergenic 35.0%
ATATTATACTTCTGTGCCGT+AGG + chr8_2:57372021-57372040 Msa1257030:intron 35.0%
ATTCGAGGACAAATTACCTA+CGG - chr8_2:57372040-57372059 None:intergenic 35.0%
TTTCTGTTCCATATGATTCG+AGG - chr8_2:57372055-57372074 None:intergenic 35.0%
CTAAAAGTAATCATGTGTGC+AGG + chr8_2:57372304-57372323 Msa1257030:intron 35.0%
TAAAGGGTGAAACGAAAATG+CGG - chr8_2:57372442-57372461 None:intergenic 35.0%
AGAATAAGTTTGTCCCTGTA+AGG - chr8_2:57372713-57372732 None:intergenic 35.0%
TAAAAGGAAAAGAGACCCTT+CGG - chr8_2:57372999-57373018 None:intergenic 35.0%
GATCTATATTAGGGCCTATT+TGG + chr8_2:57373106-57373125 Msa1257030:intron 35.0%
TTTCTGACCTTAAATCTACG+AGG + chr8_2:57373248-57373267 Msa1257030:intron 35.0%
TTCAACTCCTCGTAGATTTA+AGG - chr8_2:57373258-57373277 None:intergenic 35.0%
TTTCCACATCAATGAGAACT+AGG + chr8_2:57373330-57373349 Msa1257030:intron 35.0%
! TTTCCTAGTTCTCATTGATG+TGG - chr8_2:57373336-57373355 None:intergenic 35.0%
TCTCATACAAACTACAACAG+TGG + chr8_2:57373528-57373547 Msa1257030:CDS 35.0%
! AGATCATCAACATTGGTGTT+TGG - chr8_2:57373556-57373575 None:intergenic 35.0%
! ATTAGCTCTCTTACAGTATC+CGG - chr8_2:57373583-57373602 None:intergenic 35.0%
!!! AGCTAATAACCTTGTTTTGC+AGG + chr8_2:57373596-57373615 Msa1257030:intron 35.0%
AGAAATGATCCTGCAAAACA+AGG - chr8_2:57373608-57373627 None:intergenic 35.0%
AACTGATATCTCAAAGGAGA+AGG - chr8_2:57373839-57373858 None:intergenic 35.0%
CTAGAATCATCATCACATCT+GGG + chr8_2:57373911-57373930 Msa1257030:intron 35.0%
GCCATAGAAATGAGATAATG+GGG + chr8_2:57373982-57374001 Msa1257030:intron 35.0%
ACCCCATTATCTCATTTCTA+TGG - chr8_2:57373986-57374005 None:intergenic 35.0%
! GAATTAGAGTTTTCTTTCCC+AGG - chr8_2:57374099-57374118 None:intergenic 35.0%
GTAACATACACATTAGTGGT+CGG - chr8_2:57374168-57374187 None:intergenic 35.0%
ACTTGAGGAAAACAGAACTT+AGG + chr8_2:57374186-57374205 Msa1257030:intron 35.0%
! TTTTTCATGTGATGCATTCC+AGG + chr8_2:57374236-57374255 Msa1257030:intron 35.0%
! TTTGAGACCAAACTTATCCT+AGG - chr8_2:57374272-57374291 None:intergenic 35.0%
GGATAAGTTTGGTCTCAAAT+TGG + chr8_2:57374273-57374292 Msa1257030:intron 35.0%
!!! TTTTTTATGACCTTAGCAGC+TGG + chr8_2:57374417-57374436 Msa1257030:intron 35.0%
TAATTTATGTCCAGCTGCTA+AGG - chr8_2:57374430-57374449 None:intergenic 35.0%
AAGGCTTGACTCTTCAAATA+CGG - chr8_2:57374615-57374634 None:intergenic 35.0%
TCAAGCCTTACAACAATTGA+AGG + chr8_2:57374626-57374645 Msa1257030:CDS 35.0%
TTCCTCCTTCAATTGTTGTA+AGG - chr8_2:57374634-57374653 None:intergenic 35.0%
AATTGATCGCACCTAAAGAG+TGG - chr8_2:57371903-57371922 None:intergenic 40.0%
AACCGAGTACTCACAAAAGT+AGG + chr8_2:57372104-57372123 Msa1257030:intron 40.0%
!! TGCCTACTTTTGTGAGTACT+CGG - chr8_2:57372109-57372128 None:intergenic 40.0%
! CATGGTGTCAATGTCATGTT+CGG - chr8_2:57372216-57372235 None:intergenic 40.0%
GTTCATGTTACCAGTTGAGT+TGG + chr8_2:57372609-57372628 Msa1257030:intron 40.0%
!! ACCCTTTTAACTCTCCTTAC+AGG + chr8_2:57372696-57372715 Msa1257030:intron 40.0%
CCCTGTAAGGAGAGTTAAAA+GGG - chr8_2:57372700-57372719 None:intergenic 40.0%
!! CCCTTTTAACTCTCCTTACA+GGG + chr8_2:57372697-57372716 Msa1257030:intron 40.0%
TCCCTGTAAGGAGAGTTAAA+AGG - chr8_2:57372701-57372720 None:intergenic 40.0%
! AAAGTACTTAGACGGTGAAG+TGG - chr8_2:57372823-57372842 None:intergenic 40.0%
! GGTCGTACAAAGTACTTAGA+CGG - chr8_2:57372831-57372850 None:intergenic 40.0%
TACTTTGTACGACCTAACAC+TGG + chr8_2:57372837-57372856 Msa1257030:CDS 40.0%
GGATGTTGAACAACTGAAGT+GGG + chr8_2:57372969-57372988 Msa1257030:intron 40.0%
AAGCAGATAGTACACATGTC+TGG - chr8_2:57373380-57373399 None:intergenic 40.0%
TCTCAAAGGAGAAGGTGAAT+GGG - chr8_2:57373831-57373850 None:intergenic 40.0%
ATCTCAAAGGAGAAGGTGAA+TGG - chr8_2:57373832-57373851 None:intergenic 40.0%
GCTAGAATCATCATCACATC+TGG + chr8_2:57373910-57373929 Msa1257030:intron 40.0%
CTGACGCAAGATATTTGTGA+CGG + chr8_2:57373954-57373973 Msa1257030:intron 40.0%
! TGGGGTTTATTTGGCTTACT+TGG + chr8_2:57374000-57374019 Msa1257030:intron 40.0%
AGATTCGCCTAGGATAAGTT+TGG + chr8_2:57374262-57374281 Msa1257030:intron 40.0%
! TGGTCTCAAATTGGTTTAGC+TGG + chr8_2:57374282-57374301 Msa1257030:intron 40.0%
! GGTCTCAAATTGGTTTAGCT+GGG + chr8_2:57374283-57374302 Msa1257030:intron 40.0%
TAGAGACGACTACTCAAACT+CGG - chr8_2:57374507-57374526 None:intergenic 40.0%
AGCCTTACAACAATTGAAGG+AGG + chr8_2:57374629-57374648 Msa1257030:CDS 40.0%
CTGCTCATCAAGAAAACATG+TGG - chr8_2:57375020-57375039 None:intergenic 40.0%
! CACATGTTTTCTTGATGAGC+AGG + chr8_2:57375018-57375037 Msa1257030:intron 40.0%
AAGAAACCGTAGAAGTGATC+CGG + chr8_2:57375057-57375076 Msa1257030:CDS 40.0%
TTCACCTTTGCCATGTTTGT+GGG + chr8_2:57375088-57375107 Msa1257030:CDS 40.0%
!! GGCCTTATTGGATTCTTGTT+TGG + chr8_2:57375109-57375128 Msa1257030:CDS 40.0%
TTTGTTTCCGCCACAAACAG+CGG + chr8_2:57371624-57371643 Msa1257030:five_prime_UTR 45.0%
CCAATAGTAGTCATGGCGAA+GGG - chr8_2:57371806-57371825 None:intergenic 45.0%
TCCAATAGTAGTCATGGCGA+AGG - chr8_2:57371807-57371826 None:intergenic 45.0%
!! TGTTACCAGTTGAGTTGGAG+AGG + chr8_2:57372614-57372633 Msa1257030:intron 45.0%
TATGCCGGATCTTTAGTGCA+TGG + chr8_2:57372748-57372767 Msa1257030:intron 45.0%
GAAGCCATGCACTAAAGATC+CGG - chr8_2:57372755-57372774 None:intergenic 45.0%
GGATGTATCACACCAGTGTT+AGG - chr8_2:57372852-57372871 None:intergenic 45.0%
ACACTGGTGTGATACATCCT+AGG + chr8_2:57372853-57372872 Msa1257030:CDS 45.0%
CACTGGTGTGATACATCCTA+GGG + chr8_2:57372854-57372873 Msa1257030:CDS 45.0%
CTAATGATGCACGATTCCCT+AGG - chr8_2:57372873-57372892 None:intergenic 45.0%
AGGGAATCGTGCATCATTAG+AGG + chr8_2:57372873-57372892 Msa1257030:CDS 45.0%
GGGATGTTGAACAACTGAAG+TGG + chr8_2:57372968-57372987 Msa1257030:intron 45.0%
ATATTCTCGTTGGGCTTGGA+GGG - chr8_2:57373479-57373498 None:intergenic 45.0%
TTATCTCTGCATTGCATGCC+AGG - chr8_2:57373505-57373524 None:intergenic 45.0%
!! CAATGTTGATGATCTTCCGC+CGG + chr8_2:57373561-57373580 Msa1257030:CDS 45.0%
TCATCTCTTGTGCTTCCTTG+AGG - chr8_2:57373750-57373769 None:intergenic 45.0%
ATCATCATCACATCTGGGCA+TGG + chr8_2:57373916-57373935 Msa1257030:intron 45.0%
! ATTTGGCTTACTTGGCCAAG+TGG + chr8_2:57374008-57374027 Msa1257030:intron 45.0%
! GTTTTCTTTCCCAGGGAATC+AGG - chr8_2:57374091-57374110 None:intergenic 45.0%
TGGTCGGAACATTCACAAGA+TGG - chr8_2:57374152-57374171 None:intergenic 45.0%
ATGAGCAGGACATGCTGAAA+AGG + chr8_2:57375032-57375051 Msa1257030:intron 45.0%
AGAAACCGTAGAAGTGATCC+GGG + chr8_2:57375058-57375077 Msa1257030:CDS 45.0%
CACAAACATGGCAAAGGTGA+AGG - chr8_2:57375089-57375108 None:intergenic 45.0%
CTTCACCTTTGCCATGTTTG+TGG + chr8_2:57375087-57375106 Msa1257030:CDS 45.0%
TCCAATAAGGCCCACAAACA+TGG - chr8_2:57375101-57375120 None:intergenic 45.0%
!! TATAAATAATGAAAATATAT+GGG - chr8_2:57372563-57372582 None:intergenic 5.0%
!! ATATAAATAATGAAAATATA+TGG - chr8_2:57372564-57372583 None:intergenic 5.0%
TTGTTTCCGCCACAAACAGC+GGG + chr8_2:57371625-57371644 Msa1257030:five_prime_UTR 50.0%
CCCTTCGCCATGACTACTAT+TGG + chr8_2:57371803-57371822 Msa1257030:exon 50.0%
CATTGAAAACGAAGCTCGGG+AGG - chr8_2:57371851-57371870 None:intergenic 50.0%
CAATGTCATGTTCGGCTGTG+TGG - chr8_2:57372208-57372227 None:intergenic 50.0%
GATTGCCTCTCCAACTCAAC+TGG - chr8_2:57372622-57372641 None:intergenic 50.0%
GATATTCTCGTTGGGCTTGG+AGG - chr8_2:57373480-57373499 None:intergenic 50.0%
GAGGATATTCTCGTTGGGCT+TGG - chr8_2:57373483-57373502 None:intergenic 50.0%
GCCAGGAGGATATTCTCGTT+GGG - chr8_2:57373488-57373507 None:intergenic 50.0%
TGCCAGGAGGATATTCTCGT+TGG - chr8_2:57373489-57373508 None:intergenic 50.0%
CGGCGGAAGATCATCAACAT+TGG - chr8_2:57373563-57373582 None:intergenic 50.0%
AGCTCTCTTACAGTATCCGG+CGG - chr8_2:57373580-57373599 None:intergenic 50.0%
TCTTGTGCTTCCTTGAGGTG+AGG - chr8_2:57373745-57373764 None:intergenic 50.0%
TAGGCTATGTCCTGATTCCC+TGG + chr8_2:57374078-57374097 Msa1257030:intron 50.0%
AGGCTATGTCCTGATTCCCT+GGG + chr8_2:57374079-57374098 Msa1257030:intron 50.0%
TGATTGAGGTGTAGGGCTTC+TGG + chr8_2:57374367-57374386 Msa1257030:intron 50.0%
AGAAGCCCGGATCACTTCTA+CGG - chr8_2:57375066-57375085 None:intergenic 50.0%
AAGGCCCACAAACATGGCAA+AGG - chr8_2:57375095-57375114 None:intergenic 50.0%
! GCCATGTTTGTGGGCCTTAT+TGG + chr8_2:57375097-57375116 Msa1257030:CDS 50.0%
TGTTGTGTGCCCGCTGTTTG+TGG - chr8_2:57371637-57371656 None:intergenic 55.0%
ACGAAGCTCGGGAGGATTGA+TGG - chr8_2:57371843-57371862 None:intergenic 55.0%
!! TGGCGGTGTCGATGCTTCAT+AGG - chr8_2:57372188-57372207 None:intergenic 55.0%
TGTCATGTTCGGCTGTGTGG+CGG - chr8_2:57372205-57372224 None:intergenic 55.0%
! AACTGAAGTGGGCTCTCCGA+AGG + chr8_2:57372980-57372999 Msa1257030:intron 55.0%
! ACTGAAGTGGGCTCTCCGAA+GGG + chr8_2:57372981-57373000 Msa1257030:intron 55.0%
GCCCAACGAGAATATCCTCC+TGG + chr8_2:57373484-57373503 Msa1257030:CDS 55.0%
TCTCTGCATTGCATGCCAGG+AGG - chr8_2:57373502-57373521 None:intergenic 55.0%
GTCTCTCCTACCTCACCTCA+AGG + chr8_2:57373732-57373751 Msa1257030:CDS 55.0%
GTGCTTCCTTGAGGTGAGGT+AGG - chr8_2:57373741-57373760 None:intergenic 55.0%
TTCCAGGTGCAGATTCGCCT+AGG + chr8_2:57374252-57374271 Msa1257030:intron 55.0%
ATCCTAGGCGAATCTGCACC+TGG - chr8_2:57374257-57374276 None:intergenic 55.0%
ATGCCTCTGTCAGACAAGCG+CGG + chr8_2:57374658-57374677 Msa1257030:CDS 55.0%
GCAAAGGTGAAGGAGAAGCC+CGG - chr8_2:57375079-57375098 None:intergenic 55.0%
TGTGTGCCCGCTGTTTGTGG+CGG - chr8_2:57371634-57371653 None:intergenic 60.0%
ATGCCGCGCTTGTCTGACAG+AGG - chr8_2:57374664-57374683 None:intergenic 60.0%
ACAAGCGCGGCATCTGCAAC+AGG + chr8_2:57374671-57374690 Msa1257030:CDS 60.0%
GCGGCATCTGCAACAGGAAC+TGG + chr8_2:57374677-57374696 Msa1257030:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 57371568 57375174 57371568 ID=Msa1257030;Name=Msa1257030
chr8_2 mRNA 57371568 57375174 57371568 ID=Msa1257030-mRNA-1;Parent=Msa1257030;Name=Msa1257030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=142|1|0.87|1|0.85|0.75|8|0|222
chr8_2 exon 57371568 57371690 57371568 ID=Msa1257030-mRNA-1:exon:17671;Parent=Msa1257030-mRNA-1
chr8_2 exon 57371793 57371869 57371793 ID=Msa1257030-mRNA-1:exon:17672;Parent=Msa1257030-mRNA-1
chr8_2 exon 57372623 57372693 57372623 ID=Msa1257030-mRNA-1:exon:17673;Parent=Msa1257030-mRNA-1
chr8_2 exon 57372813 57372894 57372813 ID=Msa1257030-mRNA-1:exon:17674;Parent=Msa1257030-mRNA-1
chr8_2 exon 57373473 57373588 57373473 ID=Msa1257030-mRNA-1:exon:17675;Parent=Msa1257030-mRNA-1
chr8_2 exon 57373678 57373809 57373678 ID=Msa1257030-mRNA-1:exon:17676;Parent=Msa1257030-mRNA-1
chr8_2 exon 57374624 57374698 57374624 ID=Msa1257030-mRNA-1:exon:17677;Parent=Msa1257030-mRNA-1
chr8_2 exon 57375040 57375174 57375040 ID=Msa1257030-mRNA-1:exon:17678;Parent=Msa1257030-mRNA-1
chr8_2 five_prime_UTR 57371568 57371690 57371568 ID=Msa1257030-mRNA-1:five_prime_utr;Parent=Msa1257030-mRNA-1
chr8_2 five_prime_UTR 57371793 57371811 57371793 ID=Msa1257030-mRNA-1:five_prime_utr;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57371812 57371869 57371812 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57372623 57372693 57372623 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57372813 57372894 57372813 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57373473 57373588 57373473 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57373678 57373809 57373678 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57374624 57374698 57374624 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
chr8_2 CDS 57375040 57375174 57375040 ID=Msa1257030-mRNA-1:cds;Parent=Msa1257030-mRNA-1
Gene Sequence

>Msa1257030

ATGACTACTATTGGAAATTCATTCATCTCCATCAATCCTCCCGAGCTTCGTTTTCAATTTGAGTTGGAGAGGCAATCATTTTGCGATCTTAATGTTTTGAATAAGACAGAGTACTTCATTGCTTTTAAGGTGAAGACCACTTCACCGTCTAAGTACTTTGTACGACCTAACACTGGTGTGATACATCCTAGGGAATCGTGCATCATTAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCTGGCATGCAATGCAGAGATAAGTTTCTCATACAAACTACAACAGTGGATCCAAACACCAATGTTGATGATCTTCCGCCGGATACTTTTAATAAGGATAGTGGAAGGTTAACAGAAGAGTTGAAACTAAGAGTTGTATATGTCTCTCCTACCTCACCTCAAGGAAGCACAAGAGATGATACAGTGACAAACTCCACACAAAATCTTGATACTTCTTCGAGTCAAGCCTTACAACAATTGAAGGAGGAAAGAGATGCCTCTGTCAGACAAGCGCGGCATCTGCAACAGGAACTGGACATGCTGAAAAGGCGAAGAAACCGTAGAAGTGATCCGGGCTTCTCCTTCACCTTTGCCATGTTTGTGGGCCTTATTGGATTCTTGTTTGGTTTGCTTTTGAAACTTTCATTGTCTTCACCACCTACACAATGA

Protein sequence

>Msa1257030

MTTIGNSFISINPPELRFQFELERQSFCDLNVLNKTEYFIAFKVKTTSPSKYFVRPNTGVIHPRESCIIRVTLQAQREYPPGMQCRDKFLIQTTTVDPNTNVDDLPPDTFNKDSGRLTEELKLRVVYVSPTSPQGSTRDDTVTNSTQNLDTSSSQALQQLKEERDASVRQARHLQQELDMLKRRRNRRSDPGFSFTFAMFVGLIGFLFGLLLKLSLSSPPTQ*