AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063442


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063442.t1 MTR_2g070420 98.656 372 5 0 1 372 1 372 0.0 751
MS.gene063442.t1 MTR_1g072440 59.091 88 28 3 10 94 4 86 2.32e-27 103
MS.gene063442.t1 MTR_3g076640 48.649 74 35 2 4 76 4 75 7.35e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063442.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene063442.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene063442.t1 AT3G14420 89.041 365 40 0 3 367 2 366 0.0 663
MS.gene063442.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene063442.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene063442.t1 AT3G14415 87.332 371 41 1 3 367 2 372 0.0 657
MS.gene063442.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene063442.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene063442.t1 AT3G14420 90.202 347 34 0 21 367 1 347 0.0 635
MS.gene063442.t1 AT3G14420 90.625 320 30 0 48 367 40 359 0.0 585
MS.gene063442.t1 AT3G14420 90.625 320 30 0 48 367 46 365 0.0 583
MS.gene063442.t1 AT4G18360 84.665 313 48 0 3 315 2 314 0.0 558
MS.gene063442.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene063442.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene063442.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene063442.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene063442.t1 AT4G18360 85.714 238 34 0 3 240 2 239 5.47e-153 431
MS.gene063442.t1 AT3G14130 63.312 308 110 1 48 355 4 308 2.95e-140 401
MS.gene063442.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene063442.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene063442.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene063442.t1 AT3G14130 62.602 246 89 1 110 355 2 244 8.32e-112 327
MS.gene063442.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319
MS.gene063442.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319

Find 79 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAATCTTACAAAATTT+TGG 0.098632 2.3:+25648113 None:intergenic
TACCTCTTCTAAGGCACTTA+TGG 0.288795 2.3:+25645341 None:intergenic
TTCCTCATACTCACTGATAT+TGG 0.304687 2.3:+25648230 None:intergenic
TTCTTAAAGTACCTCTTCTA+AGG 0.314628 2.3:+25645332 None:intergenic
GCTTTGGCACTTGGTGCCTC+TGG 0.345429 2.3:-25645143 MS.gene063442:CDS
GTCTTCAAGGCTTTGGCACT+TGG 0.349066 2.3:-25645152 MS.gene063442:CDS
GGACTTGCTTCATATGTTGC+TGG 0.352126 2.3:-25645954 MS.gene063442:CDS
TCTAAGGCACTTATGGTTGC+TGG 0.360123 2.3:+25645348 None:intergenic
AGTACACCCTTCACAAGAAT+TGG 0.361205 2.3:+25645682 None:intergenic
TAGTAGTCAAACGCCATCTT+TGG 0.400379 2.3:+25648189 None:intergenic
AACCGATGTCTTCAAGGCTT+TGG 0.403047 2.3:-25645159 MS.gene063442:CDS
CCGTGGAACCGATGTCTTCA+AGG 0.420956 2.3:-25645165 MS.gene063442:CDS
TGACCACATCGTTGCTGATT+GGG 0.421642 2.3:-25644476 MS.gene063442:CDS
GCAAGAGCTGCATCAGCTGC+TGG 0.425139 2.3:-25647061 MS.gene063442:CDS
GCTTCTCTGCGTCCAAGTCT+TGG 0.429282 2.3:+25646368 None:intergenic
ACTCATCACGTAACATTTGA+AGG 0.447093 2.3:+25644551 None:intergenic
TCTTTCAGACATTGTCATCA+TGG 0.448736 2.3:-25646660 MS.gene063442:intron
GTGACCACATCGTTGCTGAT+TGG 0.449542 2.3:-25644477 MS.gene063442:CDS
TCCATTTAGGCTAATGACTC+TGG 0.458314 2.3:-25645975 MS.gene063442:intron
GTGTATTCTCTGGCTGCTGA+TGG 0.460684 2.3:-25644595 MS.gene063442:CDS
GCGTTTGACTACTATGCATC+TGG 0.462223 2.3:-25648180 MS.gene063442:CDS
AACCAATATCAGTGAGTATG+AGG 0.469087 2.3:-25648232 MS.gene063442:CDS
GCAGTTGGAGCAATCATGAT+TGG 0.471140 2.3:+25647879 None:intergenic
CTTTCAGACATTGTCATCAT+GGG 0.471894 2.3:-25646659 MS.gene063442:intron
TTATTTAGGTGTACAAGGAC+AGG 0.473436 2.3:-25646463 MS.gene063442:intron
CTGGCTGCTGATGGAGAAGC+TGG 0.478038 2.3:-25644586 MS.gene063442:CDS
GCAGTGCAAAGTGGTGCAGC+TGG 0.480581 2.3:-25645414 MS.gene063442:CDS
GAAGTTGCTTCCACTGGACC+TGG 0.482888 2.3:-25646619 MS.gene063442:CDS
GTCGAAGAAGTTGCTTCCAC+TGG 0.490758 2.3:-25646625 MS.gene063442:CDS
GAGTTAACAATGGCTTTAAG+TGG 0.494236 2.3:-25644526 MS.gene063442:CDS
CTCACATCAATAAGAATTCG+CGG 0.497295 2.3:+25647948 None:intergenic
GTCTTGGAGTATCAACGGTA+AGG 0.498559 2.3:+25646384 None:intergenic
GTTCTTTATTTAGGTGTACA+AGG 0.502004 2.3:-25646468 MS.gene063442:intron
AGGACTGAACCTTGGAAAGA+TGG 0.503842 2.3:-25646083 MS.gene063442:CDS
GACATGTCAACTACTGTCCT+TGG 0.511523 2.3:-25647918 MS.gene063442:CDS
CAGCCTTCCAATTCTTGTGA+AGG 0.516162 2.3:-25645689 MS.gene063442:CDS
GAGAAGCTGATATCAAGAAC+AGG 0.524863 2.3:-25646352 MS.gene063442:intron
ATCAGCTGCTGGAACAATCA+TGG 0.526902 2.3:-25647050 MS.gene063442:intron
AAATTGATCGTACTCTGAGC+TGG 0.527284 2.3:-25645929 MS.gene063442:CDS
ACGCCCTGTGGTGTATTCTC+TGG 0.532490 2.3:-25644605 MS.gene063442:CDS
CATAATCTTGGTATGGCACG+AGG 0.535981 2.3:+25644436 None:intergenic
TTACTTCGTCCATCTTTCCA+AGG 0.537036 2.3:+25646074 None:intergenic
TGGAGAAGCTGGTGTAAGAA+AGG 0.545364 2.3:-25644575 MS.gene063442:CDS
AAGGCAGAAATTGCCAAAGA+TGG 0.545523 2.3:-25648202 MS.gene063442:CDS
CTTCACAAGAATTGGAAGGC+TGG 0.548322 2.3:+25645690 None:intergenic
AGCCTTCCAATTCTTGTGAA+GGG 0.552515 2.3:-25645688 MS.gene063442:CDS
AAGTGGATGCCGCTCACTCA+AGG 0.555841 2.3:-25644509 MS.gene063442:CDS
AATCAAGTTGTCTTGCTCCA+TGG 0.556405 2.3:+25645376 None:intergenic
CAGAAAATGGCTCATCCCGA+GGG 0.557082 2.3:-25647852 MS.gene063442:intron
AAGTTGTCTTGCTCCATGGT+TGG 0.558965 2.3:+25645380 None:intergenic
TCAGAAAATGGCTCATCCCG+AGG 0.565352 2.3:-25647853 MS.gene063442:CDS
ACCGTTGATACTCCAAGACT+TGG 0.567938 2.3:-25646380 MS.gene063442:CDS
GGAATTATTGTGTCCAACCA+TGG 0.572782 2.3:-25645393 MS.gene063442:CDS
CCTTGAAGACATCGGTTCCA+CGG 0.578507 2.3:+25645165 None:intergenic
AACCATAAGTGCCTTAGAAG+AGG 0.579700 2.3:-25645343 MS.gene063442:intron
GCAAGGCTAGCAGTGCAAAG+TGG 0.582697 2.3:-25645423 MS.gene063442:CDS
GAGTGATTTCCTTGAGTGAG+CGG 0.593581 2.3:+25644500 None:intergenic
TCTTGGAGTATCAACGGTAA+GGG 0.599818 2.3:+25646385 None:intergenic
TCCAAGTCTTGGAGTATCAA+CGG 0.600358 2.3:+25646379 None:intergenic
CATCTGGTGCTGAGGACCAG+TGG 0.600366 2.3:-25648164 MS.gene063442:CDS
TGGAGCAATCATGATTGGCA+TGG 0.601089 2.3:+25647884 None:intergenic
CTACTATGCATCTGGTGCTG+AGG 0.603217 2.3:-25648172 MS.gene063442:CDS
TAGGTTGTGAAAGCTGCTCA+AGG 0.605864 2.3:-25645221 MS.gene063442:CDS
GCAGCCAGAGAATACACCAC+AGG 0.615884 2.3:+25644601 None:intergenic
TGATGAGTTTGAGTTAACAA+TGG 0.619751 2.3:-25644536 MS.gene063442:CDS
TGATCGTACTCTGAGCTGGA+AGG 0.628034 2.3:-25645925 MS.gene063442:intron
AAAGCGGATTCCAGGTCCAG+TGG 0.630109 2.3:+25646609 None:intergenic
CACCCTTCACAAGAATTGGA+AGG 0.648050 2.3:+25645686 None:intergenic
TTGGATGGAGGTGTACGCCG+TGG 0.653698 2.3:-25645182 MS.gene063442:CDS
CAGCCAGAGAATACACCACA+GGG 0.658781 2.3:+25644602 None:intergenic
TGCCAAAGCCTTGAAGACAT+CGG 0.666124 2.3:+25645157 None:intergenic
GTGAGTATGAGGAAATTGCA+AGG 0.666466 2.3:-25648221 MS.gene063442:CDS
TGTCCCAATCAGCAACGATG+TGG 0.667462 2.3:+25644473 None:intergenic
TGTCTAGATTGGACGCCCTG+TGG 0.692710 2.3:-25644617 MS.gene063442:intron
GGCACGAGGATTAACACGAG+GGG 0.715789 2.3:+25644450 None:intergenic
TATACTCACAAATATGCCAG+AGG 0.718024 2.3:+25645127 None:intergenic
TGGCACGAGGATTAACACGA+GGG 0.726021 2.3:+25644449 None:intergenic
GAAGGGTGTACTCACTGCTG+AGG 0.727281 2.3:-25645671 MS.gene063442:CDS
ATGGCACGAGGATTAACACG+AGG 0.730624 2.3:+25644448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTATATTAATTATAG+AGG + chr2.3:25646676-25646695 None:intergenic 10.0%
!! AAATTAGTAACATAGTTTAA+TGG - chr2.3:25646645-25646664 MS.gene063442:CDS 15.0%
!! AATTAATATAATTGTTACCT+TGG - chr2.3:25646680-25646699 MS.gene063442:intron 15.0%
!! CAAATGTTTATTACAAAAAT+AGG + chr2.3:25645664-25645683 None:intergenic 15.0%
!! CATAATAAAGTAACATAATT+TGG + chr2.3:25644618-25644637 None:intergenic 15.0%
!! TTAGTAGTAATTTCTTAATT+CGG - chr2.3:25647614-25647633 MS.gene063442:intron 15.0%
!!! CAATGAGAATTTAAAATATT+GGG + chr2.3:25647589-25647608 None:intergenic 15.0%
!!! GTTATAACGATAAATTATTT+TGG + chr2.3:25647999-25648018 None:intergenic 15.0%
!!! TATGAAATCTTACAAAATTT+TGG + chr2.3:25644568-25644587 None:intergenic 15.0%
!!! TTTTACGACTATTTTATTAA+TGG - chr2.3:25647214-25647233 MS.gene063442:intron 15.0%
!! AAATTCTTCAATGTCAAAAA+TGG + chr2.3:25646572-25646591 None:intergenic 20.0%
!! AATTAATTGAAGAAGTAATG+AGG + chr2.3:25645911-25645930 None:intergenic 20.0%
!! ATGTATAAAAACAAACTCAA+TGG - chr2.3:25645451-25645470 MS.gene063442:intron 20.0%
!! CAAAAACAACACTAAATTAT+TGG + chr2.3:25646929-25646948 None:intergenic 20.0%
!! CAATTGTCTTCTATAATATA+TGG - chr2.3:25647954-25647973 MS.gene063442:CDS 20.0%
!! TATTAAGAAAACTCTACAAT+AGG - chr2.3:25645479-25645498 MS.gene063442:intron 20.0%
!! TATTAATAGAATTCTCAAAC+AGG + chr2.3:25647051-25647070 None:intergenic 20.0%
!! TTAAGAAATTACTACTAATG+AGG + chr2.3:25647612-25647631 None:intergenic 20.0%
!!! ATCTTACAAAATTTTGGAAA+AGG + chr2.3:25644562-25644581 None:intergenic 20.0%
!!! GCAATGAGAATTTAAAATAT+TGG + chr2.3:25647590-25647609 None:intergenic 20.0%
!!! TAATTTGTTCGTTAAGATAA+CGG + chr2.3:25648036-25648055 None:intergenic 20.0%
!!! TATTGATAACTTGATCAATA+AGG - chr2.3:25646458-25646477 MS.gene063442:CDS 20.0%
! AAATTATGCAATGTCTAGAT+TGG - chr2.3:25648050-25648069 MS.gene063442:intron 25.0%
! CAAAGAATCATATTTACATG+AGG - chr2.3:25646385-25646404 MS.gene063442:CDS 25.0%
! CAATTGTCGTAATAAAAGTT+TGG + chr2.3:25647940-25647959 None:intergenic 25.0%
! GAAAATAGCTTATTACATGT+CGG - chr2.3:25645855-25645874 MS.gene063442:intron 25.0%
! TATTGTCATATGTTCTGTAT+TGG - chr2.3:25646183-25646202 MS.gene063442:intron 25.0%
! TCAAACGAATTTGATAAAGT+TGG + chr2.3:25647734-25647753 None:intergenic 25.0%
! TGTTAATGTGCTGAAAAATA+TGG - chr2.3:25644684-25644703 MS.gene063442:intron 25.0%
! TTATCACAACTATGATAACT+TGG - chr2.3:25645327-25645346 MS.gene063442:intron 25.0%
! TTGTCTTCTATAATATATGG+AGG - chr2.3:25647957-25647976 MS.gene063442:CDS 25.0%
!! ACAAAAGAAAACACTACTTT+TGG - chr2.3:25646865-25646884 MS.gene063442:intron 25.0%
!! ACATGATAGTGTAATTTGAT+TGG - chr2.3:25645786-25645805 MS.gene063442:intron 25.0%
!! ATTCTGTTCATTTTGTTAGA+AGG - chr2.3:25644920-25644939 MS.gene063442:intron 25.0%
!! CATTGTGTTTAAGATTAACA+GGG + chr2.3:25647832-25647851 None:intergenic 25.0%
!! GTAACATAATTTGGTAACTT+AGG + chr2.3:25644609-25644628 None:intergenic 25.0%
!! TTCTGTTCATTTTGTTAGAA+GGG - chr2.3:25644921-25644940 MS.gene063442:intron 25.0%
!! TTGACATTGAAGAATTTTGA+AGG - chr2.3:25646575-25646594 MS.gene063442:intron 25.0%
!! TTTTCAATAAGCTAGTACTA+GGG - chr2.3:25647117-25647136 MS.gene063442:intron 25.0%
!! TTTTTGCATAGCACAATATT+TGG - chr2.3:25645825-25645844 MS.gene063442:intron 25.0%
!!! GCTTTTTCTTTAAATTCACT+TGG - chr2.3:25644856-25644875 MS.gene063442:intron 25.0%
!!! GTCATTTTTAGTCTACATAA+TGG - chr2.3:25646890-25646909 MS.gene063442:intron 25.0%
!!! TCTACATAATGGAATTTTCA+AGG - chr2.3:25646901-25646920 MS.gene063442:intron 25.0%
!!! TGTTTTTGTTAATTTTGTGC+AGG - chr2.3:25646941-25646960 MS.gene063442:intron 25.0%
!!! TTTGATAAAGTTGGCTTTTA+TGG + chr2.3:25647725-25647744 None:intergenic 25.0%
!!! TTTTTCAATAAGCTAGTACT+AGG - chr2.3:25647116-25647135 MS.gene063442:intron 25.0%
ACATGTCACTAAACACAAAA+GGG + chr2.3:25645563-25645582 None:intergenic 30.0%
AGAAAAAGCAATTATACCCT+CGG + chr2.3:25644845-25644864 None:intergenic 30.0%
ATATGGTTGACAAACATTAC+AGG - chr2.3:25644701-25644720 MS.gene063442:intron 30.0%
CCTGTTAATCTTAAACACAA+TGG - chr2.3:25647830-25647849 MS.gene063442:intron 30.0%
CTGAATTCATAATTCTTGAG+TGG - chr2.3:25647790-25647809 MS.gene063442:intron 30.0%
GAATTCAAGTGAAGAAGAAA+TGG + chr2.3:25646138-25646157 None:intergenic 30.0%
GTACAAAACGATAATTGAGA+CGG - chr2.3:25645087-25645106 MS.gene063442:intron 30.0%
GTACACCTAAATAAAGAACA+TGG + chr2.3:25646209-25646228 None:intergenic 30.0%
TACATGTCACTAAACACAAA+AGG + chr2.3:25645564-25645583 None:intergenic 30.0%
TCAGTTTAATAGCTTATCAG+TGG + chr2.3:25645371-25645390 None:intergenic 30.0%
TGTCGTAATAAAAGTTTGGT+CGG + chr2.3:25647936-25647955 None:intergenic 30.0%
TGTTATAGTGATTGCAATTG+TGG + chr2.3:25646420-25646439 None:intergenic 30.0%
TTCTTCAATGTCAAAAATGG+TGG + chr2.3:25646569-25646588 None:intergenic 30.0%
TTGACAAACATTACAGGTTT+AGG - chr2.3:25644707-25644726 MS.gene063442:intron 30.0%
! ATTCACTTGGATTTCTGAAA+TGG - chr2.3:25644869-25644888 MS.gene063442:intron 30.0%
! ATTGGCCATGTTCTTTATTT+AGG - chr2.3:25646201-25646220 MS.gene063442:intron 30.0%
! CCATTGTGTTTAAGATTAAC+AGG + chr2.3:25647833-25647852 None:intergenic 30.0%
! GTTCTTTATTTAGGTGTACA+AGG - chr2.3:25646210-25646229 MS.gene063442:intron 30.0%
! TGATGAGTTTGAGTTAACAA+TGG - chr2.3:25648142-25648161 MS.gene063442:CDS 30.0%
! TTCTTAAAGTACCTCTTCTA+AGG + chr2.3:25647349-25647368 None:intergenic 30.0%
! TTGATGTAAATTTTGCAGCA+AGG - chr2.3:25647238-25647257 MS.gene063442:intron 30.0%
! TTGTGTTGTTGACATTACTT+AGG - chr2.3:25647438-25647457 MS.gene063442:intron 30.0%
! TTTAGCTTATATTACCCTTC+TGG - chr2.3:25644988-25645007 MS.gene063442:intron 30.0%
!! ATATTTACATGAGGTTGATG+CGG - chr2.3:25646394-25646413 MS.gene063442:CDS 30.0%
!!! AAGCTACATTTTGAAGCTTA+TGG + chr2.3:25645183-25645202 None:intergenic 30.0%
!!! GTACAATTTTTTTCTTGTGC+AGG - chr2.3:25645581-25645600 MS.gene063442:intron 30.0%
AACCAATATCAGTGAGTATG+AGG - chr2.3:25644446-25644465 MS.gene063442:CDS 35.0%
AACGAATTGAGCGAACAAAT+TGG + chr2.3:25646804-25646823 None:intergenic 35.0%
ACATCTCTGCAAATATCTAC+AGG + chr2.3:25645742-25645761 None:intergenic 35.0%
ACTCATCACGTAACATTTGA+AGG + chr2.3:25648130-25648149 None:intergenic 35.0%
ATAGCATGTAAGTATCCAGA+AGG + chr2.3:25645006-25645025 None:intergenic 35.0%
ATCATGCATGACATGAATTG+CGG - chr2.3:25644960-25644979 MS.gene063442:intron 35.0%
ATTGTTACCTTGGTCCATTT+AGG - chr2.3:25646690-25646709 MS.gene063442:intron 35.0%
CATCTCTGCAAATATCTACA+GGG + chr2.3:25645741-25645760 None:intergenic 35.0%
CATGTCACTAAACACAAAAG+GGG + chr2.3:25645562-25645581 None:intergenic 35.0%
CATTCATGTAGTTAACGGTT+TGG - chr2.3:25647662-25647681 MS.gene063442:intron 35.0%
CTCACATCAATAAGAATTCG+CGG + chr2.3:25644733-25644752 None:intergenic 35.0%
CTTTCAGACATTGTCATCAT+GGG - chr2.3:25646019-25646038 MS.gene063442:intron 35.0%
GAAAAAGCAATTATACCCTC+GGG + chr2.3:25644844-25644863 None:intergenic 35.0%
GTAATTTGATTGGATGCATG+CGG - chr2.3:25645796-25645815 MS.gene063442:intron 35.0%
GTAGGTGTACAAAACATCAA+AGG + chr2.3:25644643-25644662 None:intergenic 35.0%
GTCGTAATAAAAGTTTGGTC+GGG + chr2.3:25647935-25647954 None:intergenic 35.0%
TAGCATGTAAGTATCCAGAA+GGG + chr2.3:25645005-25645024 None:intergenic 35.0%
TATACTCACAAATATGCCAG+AGG + chr2.3:25647554-25647573 None:intergenic 35.0%
TCACGTATAACTGGAAAAAG+CGG + chr2.3:25646088-25646107 None:intergenic 35.0%
TCTTTCAGACATTGTCATCA+TGG - chr2.3:25646018-25646037 MS.gene063442:intron 35.0%
TTATTTAGGTGTACAAGGAC+AGG - chr2.3:25646215-25646234 MS.gene063442:intron 35.0%
TTCCTCATACTCACTGATAT+TGG + chr2.3:25644451-25644470 None:intergenic 35.0%
TTCTTAATTCGGATCGTCTA+TGG - chr2.3:25647625-25647644 MS.gene063442:intron 35.0%
! GTTTTTGTTCTTAGAGTCGT+AGG + chr2.3:25644661-25644680 None:intergenic 35.0%
! TAAGATAACGGCAGTACTAA+TGG + chr2.3:25648024-25648043 None:intergenic 35.0%
! TTTTGTTGCTCACGTATAAC+TGG + chr2.3:25646097-25646116 None:intergenic 35.0%
!! AATTTTGAAGGACTGAACCT+TGG - chr2.3:25646587-25646606 MS.gene063442:intron 35.0%
!! GAGTTAACAATGGCTTTAAG+TGG - chr2.3:25648152-25648171 MS.gene063442:CDS 35.0%
!! TCCAACTGCTTTTCAGAAAA+TGG - chr2.3:25644813-25644832 MS.gene063442:intron 35.0%
AAATTGATCGTACTCTGAGC+TGG - chr2.3:25646749-25646768 MS.gene063442:intron 40.0%
AACCATAAGTGCCTTAGAAG+AGG - chr2.3:25647335-25647354 MS.gene063442:intron 40.0%
AAGGCAGAAATTGCCAAAGA+TGG - chr2.3:25644476-25644495 MS.gene063442:CDS 40.0%
ACACCTCCATCCAAAAATAC+AGG + chr2.3:25647490-25647509 None:intergenic 40.0%
AGCCTTCCAATTCTTGTGAA+GGG - chr2.3:25646990-25647009 MS.gene063442:intron 40.0%
AGCTGAAAAAGCTGGATTCA+AGG - chr2.3:25646264-25646283 MS.gene063442:intron 40.0%
AGTACACCCTTCACAAGAAT+TGG + chr2.3:25646999-25647018 None:intergenic 40.0%
CGACGCATTCATGTAGTTAA+CGG - chr2.3:25647657-25647676 MS.gene063442:intron 40.0%
GAGAAGCTGATATCAAGAAC+AGG - chr2.3:25646326-25646345 MS.gene063442:intron 40.0%
GGAATTATTGTGTCCAACCA+TGG - chr2.3:25647285-25647304 MS.gene063442:intron 40.0%
GTAATAAAAGTTTGGTCGGG+AGG + chr2.3:25647932-25647951 None:intergenic 40.0%
GTGAGTATGAGGAAATTGCA+AGG - chr2.3:25644457-25644476 MS.gene063442:CDS 40.0%
TAGTAGTCAAACGCCATCTT+TGG + chr2.3:25644492-25644511 None:intergenic 40.0%
TCCATTTAGGCTAATGACTC+TGG - chr2.3:25646703-25646722 MS.gene063442:intron 40.0%
TTACTTCGTCCATCTTTCCA+AGG + chr2.3:25646607-25646626 None:intergenic 40.0%
! AATCAAGTTGTCTTGCTCCA+TGG + chr2.3:25647305-25647324 None:intergenic 40.0%
! AGGTCGTGTTCCTGTATTTT+TGG - chr2.3:25647477-25647496 MS.gene063442:intron 40.0%
! ATTTTGTGCAGGATGTGAAG+TGG - chr2.3:25646952-25646971 MS.gene063442:intron 40.0%
! TCATTAGCCTAAATGGACCA+AGG + chr2.3:25646700-25646719 None:intergenic 40.0%
! TCCAAGTCTTGGAGTATCAA+CGG + chr2.3:25646302-25646321 None:intergenic 40.0%
! TCCAGAGTCATTAGCCTAAA+TGG + chr2.3:25646707-25646726 None:intergenic 40.0%
! TCTTGGAGTATCAACGGTAA+GGG + chr2.3:25646296-25646315 None:intergenic 40.0%
! TGTTTTCTTGAAGAGTCCAC+TGG + chr2.3:25644533-25644552 None:intergenic 40.0%
!! GCCATTTTCTGAAAAGCAGT+TGG + chr2.3:25644817-25644836 None:intergenic 40.0%
!! TACCTCTTCTAAGGCACTTA+TGG + chr2.3:25647340-25647359 None:intergenic 40.0%
!!! CGTGTTCCTGTATTTTTGGA+TGG - chr2.3:25647481-25647500 MS.gene063442:intron 40.0%
!!! GCATGGAAATTTTGAAGCCA+AGG + chr2.3:25644780-25644799 None:intergenic 40.0%
!!! GTTCCTGTATTTTTGGATGG+AGG - chr2.3:25647484-25647503 MS.gene063442:intron 40.0%
AACCGATGTCTTCAAGGCTT+TGG - chr2.3:25647519-25647538 MS.gene063442:intron 45.0%
AAGTTGTCTTGCTCCATGGT+TGG + chr2.3:25647301-25647320 None:intergenic 45.0%
ACCGTTGATACTCCAAGACT+TGG - chr2.3:25646298-25646317 MS.gene063442:intron 45.0%
AGGACTGAACCTTGGAAAGA+TGG - chr2.3:25646595-25646614 MS.gene063442:intron 45.0%
ATCAGCTGCTGGAACAATCA+TGG - chr2.3:25645628-25645647 MS.gene063442:intron 45.0%
CAAGAACAGGTAACTCGTTG+CGG - chr2.3:25646339-25646358 MS.gene063442:intron 45.0%
CACCCTTCACAAGAATTGGA+AGG + chr2.3:25646995-25647014 None:intergenic 45.0%
CAGCCTTCCAATTCTTGTGA+AGG - chr2.3:25646989-25647008 MS.gene063442:intron 45.0%
CATAATCTTGGTATGGCACG+AGG + chr2.3:25648245-25648264 None:intergenic 45.0%
CTCCTGATTATTTCAGCCAG+AGG + chr2.3:25647886-25647905 None:intergenic 45.0%
CTTCACAAGAATTGGAAGGC+TGG + chr2.3:25646991-25647010 None:intergenic 45.0%
GACATGTCAACTACTGTCCT+TGG - chr2.3:25644760-25644779 MS.gene063442:intron 45.0%
GACCTCTGGCTGAAATAATC+AGG - chr2.3:25647881-25647900 MS.gene063442:CDS 45.0%
GAGTGATTTCCTTGAGTGAG+CGG + chr2.3:25648181-25648200 None:intergenic 45.0%
GCAGTTGGAGCAATCATGAT+TGG + chr2.3:25644802-25644821 None:intergenic 45.0%
GCGTTTGACTACTATGCATC+TGG - chr2.3:25644498-25644517 MS.gene063442:CDS 45.0%
GTGAGAAGAGCTGAAAAAGC+TGG - chr2.3:25646256-25646275 MS.gene063442:intron 45.0%
TAGGTTGTGAAAGCTGCTCA+AGG - chr2.3:25647457-25647476 MS.gene063442:intron 45.0%
TGCCAAAGCCTTGAAGACAT+CGG + chr2.3:25647524-25647543 None:intergenic 45.0%
TGGAGAAGCTGGTGTAAGAA+AGG - chr2.3:25648103-25648122 MS.gene063442:intron 45.0%
TGGAGCAATCATGATTGGCA+TGG + chr2.3:25644797-25644816 None:intergenic 45.0%
! AACTGGAAAAAGCGGATTCC+AGG + chr2.3:25646080-25646099 None:intergenic 45.0%
! GAGCGAACAAATTGGTGACA+TGG + chr2.3:25646796-25646815 None:intergenic 45.0%
! GATAACGGCAGTACTAATGG+TGG + chr2.3:25648021-25648040 None:intergenic 45.0%
! GGACTTGCTTCATATGTTGC+TGG - chr2.3:25646724-25646743 MS.gene063442:intron 45.0%
! GTCTTGGAGTATCAACGGTA+AGG + chr2.3:25646297-25646316 None:intergenic 45.0%
! TCTAAGGCACTTATGGTTGC+TGG + chr2.3:25647333-25647352 None:intergenic 45.0%
! TGACCACATCGTTGCTGATT+GGG - chr2.3:25648202-25648221 MS.gene063442:CDS 45.0%
ATGGCACGAGGATTAACACG+AGG + chr2.3:25648233-25648252 None:intergenic 50.0%
CAGAAAATGGCTCATCCCGA+GGG - chr2.3:25644826-25644845 MS.gene063442:intron 50.0%
CAGACGCGCAATCAACACTT+TGG + chr2.3:25647773-25647792 None:intergenic 50.0%
CAGCCAGAGAATACACCACA+GGG + chr2.3:25648079-25648098 None:intergenic 50.0%
GTCGAAGAAGTTGCTTCCAC+TGG - chr2.3:25646053-25646072 MS.gene063442:intron 50.0%
GTGACCACATCGTTGCTGAT+TGG - chr2.3:25648201-25648220 MS.gene063442:CDS 50.0%
GTGTATTCTCTGGCTGCTGA+TGG - chr2.3:25648083-25648102 MS.gene063442:intron 50.0%
TAGTACCCTAGTTCGACCTC+TGG - chr2.3:25647867-25647886 MS.gene063442:CDS 50.0%
TCAGAAAATGGCTCATCCCG+AGG - chr2.3:25644825-25644844 MS.gene063442:intron 50.0%
TGATCGTACTCTGAGCTGGA+AGG - chr2.3:25646753-25646772 MS.gene063442:intron 50.0%
TGGCACGAGGATTAACACGA+GGG + chr2.3:25648232-25648251 None:intergenic 50.0%
TGTCCCAATCAGCAACGATG+TGG + chr2.3:25648208-25648227 None:intergenic 50.0%
TTCAGCCAGAGGTCGAACTA+GGG + chr2.3:25647875-25647894 None:intergenic 50.0%
TTTCAGCCAGAGGTCGAACT+AGG + chr2.3:25647876-25647895 None:intergenic 50.0%
! CTACTATGCATCTGGTGCTG+AGG - chr2.3:25644506-25644525 MS.gene063442:CDS 50.0%
! GTCTTCAAGGCTTTGGCACT+TGG - chr2.3:25647526-25647545 MS.gene063442:intron 50.0%
!! CCTTGAAGACATCGGTTCCA+CGG + chr2.3:25647516-25647535 None:intergenic 50.0%
AAGTGGATGCCGCTCACTCA+AGG - chr2.3:25648169-25648188 MS.gene063442:CDS 55.0%
ACGCCCTGTGGTGTATTCTC+TGG - chr2.3:25648073-25648092 MS.gene063442:intron 55.0%
CCGTGGAACCGATGTCTTCA+AGG - chr2.3:25647513-25647532 MS.gene063442:intron 55.0%
GAAGTTGCTTCCACTGGACC+TGG - chr2.3:25646059-25646078 MS.gene063442:intron 55.0%
GCAAGGCTAGCAGTGCAAAG+TGG - chr2.3:25647255-25647274 MS.gene063442:intron 55.0%
GCAGCCAGAGAATACACCAC+AGG + chr2.3:25648080-25648099 None:intergenic 55.0%
GCTTCTCTGCGTCCAAGTCT+TGG + chr2.3:25646313-25646332 None:intergenic 55.0%
GGCACGAGGATTAACACGAG+GGG + chr2.3:25648231-25648250 None:intergenic 55.0%
TGTCTAGATTGGACGCCCTG+TGG - chr2.3:25648061-25648080 MS.gene063442:intron 55.0%
! AAAGCGGATTCCAGGTCCAG+TGG + chr2.3:25646072-25646091 None:intergenic 55.0%
! GAAGGGTGTACTCACTGCTG+AGG - chr2.3:25647007-25647026 MS.gene063442:intron 55.0%
CTGGCTGCTGATGGAGAAGC+TGG - chr2.3:25648092-25648111 MS.gene063442:intron 60.0%
GCAAGAGCTGCATCAGCTGC+TGG - chr2.3:25645617-25645636 MS.gene063442:intron 60.0%
GCAGTGCAAAGTGGTGCAGC+TGG - chr2.3:25647264-25647283 MS.gene063442:intron 60.0%
! CATCTGGTGCTGAGGACCAG+TGG - chr2.3:25644514-25644533 MS.gene063442:CDS 60.0%
! TTGGATGGAGGTGTACGCCG+TGG - chr2.3:25647496-25647515 MS.gene063442:intron 60.0%
!! GCTTTGGCACTTGGTGCCTC+TGG - chr2.3:25647535-25647554 MS.gene063442:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 25644435 25648265 25644435 ID=MS.gene063442
chr2.3 mRNA 25644435 25648265 25644435 ID=MS.gene063442.t1;Parent=MS.gene063442
chr2.3 exon 25648126 25648265 25648126 ID=MS.gene063442.t1.exon1;Parent=MS.gene063442.t1
chr2.3 CDS 25648126 25648265 25648126 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25647853 25647977 25647853 ID=MS.gene063442.t1.exon2;Parent=MS.gene063442.t1
chr2.3 CDS 25647853 25647977 25647853 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25647051 25647097 25647051 ID=MS.gene063442.t1.exon3;Parent=MS.gene063442.t1
chr2.3 CDS 25647051 25647097 25647051 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25646597 25646674 25646597 ID=MS.gene063442.t1.exon4;Parent=MS.gene063442.t1
chr2.3 CDS 25646597 25646674 25646597 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25646353 25646477 25646353 ID=MS.gene063442.t1.exon5;Parent=MS.gene063442.t1
chr2.3 CDS 25646353 25646477 25646353 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25646078 25646144 25646078 ID=MS.gene063442.t1.exon6;Parent=MS.gene063442.t1
chr2.3 CDS 25646078 25646144 25646078 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25645926 25645988 25645926 ID=MS.gene063442.t1.exon7;Parent=MS.gene063442.t1
chr2.3 CDS 25645926 25645988 25645926 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25645668 25645737 25645668 ID=MS.gene063442.t1.exon8;Parent=MS.gene063442.t1
chr2.3 CDS 25645668 25645737 25645668 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25645344 25645444 25645344 ID=MS.gene063442.t1.exon9;Parent=MS.gene063442.t1
chr2.3 CDS 25645344 25645444 25645344 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25645136 25645240 25645136 ID=MS.gene063442.t1.exon10;Parent=MS.gene063442.t1
chr2.3 CDS 25645136 25645240 25645136 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
chr2.3 exon 25644435 25644632 25644435 ID=MS.gene063442.t1.exon11;Parent=MS.gene063442.t1
chr2.3 CDS 25644435 25644632 25644435 ID=cds.MS.gene063442.t1;Parent=MS.gene063442.t1
Gene Sequence

>MS.gene063442

ATGGGAGAGATAACCAATATCAGTGAGTATGAGGAAATTGCAAGGCAGAAATTGCCAAAGATGGCGTTTGACTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTCAAGAAAACAGAAATGCCTTTTCCAAAATTTTGTAAGATTTCATATAACTTATTTTGACAGTTCCTAAGTTACCAAATTATGTTACTTTATTATGTTCCTTTGATGTTTTGTACACCTACGACTCTAAGAACAAAAACAAATGTTAATGTGCTGAAAAATATGGTTGACAAACATTACAGGTTTAGGCCGCGAATTCTTATTGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTTTTCAGAAAATGGCTCATCCCGAGGGTATAATTGCTTTTTCTTTAAATTCACTTGGATTTCTGAAATGGAAAATGAAGTTGTTTTGTTTTGTGCAATATTCTGTTCATTTTGTTAGAAGGGAAAAAAATCATGAAAAATCATGCATGACATGAATTGCGGAGAGTTTTAGCTTATATTACCCTTCTGGATACTTACATGCTATGAAAATGATTACTATAAGCATTTGTGAGACTATTTAGAAACAACTTATCTACTTGATTTATGTACAAAACGATAATTGAGACGGAGATCATTAAGTTTATCTGTGCTTATCAAAACAACTTATGATATGTTTATATGTTGTTTTTAGCTTATTTCCATAAGCTTCAAAATGTAGCTTATGAAAACAGCTTAGAGCTTAAATGAAAGTAATTTGACTTTATTTTATCTTTTGTTATAGAAATAACATATACACGAACACTGATACGATAAATGTTTATGCTTTACGCACTTACTCAAACTGTTTATCACAACTATGATAACTTGGTTTCTAGTTGTGTAACTTCCACTGATAAGCTATTAAACTGAAATTAAGTGTGAATAAACATTAGTAATTCTTAAAAAAGTATCATCTGCTAGTTTTGATAAATGTATAAAAACAAACTCAATGGTTTTTTATTAAGAAAACTCTACAATAGGATAGCAACATGAGATTTAAATTGTCGATGTTCTTGTATTATATATTATATTTCAAATCCCCTTTTGTGTTTAGTGACATGTACAATTTTTTTCTTGTGCAGGAGAATATGCAACAGCAAGAGCTGCATCAGCTGCTGGAACAATCATGGTACTTCTCTTCCTATTTTTGTAATAAACATTTGATTTGTATACACTGTCATATAAAACATTTTTACACATGCTTTCAATCAAATCTTCCCTGTAGATATTTGCAGAGATGTTTTAGAAACGAACAAAACTAAGTGACATGATAGTGTAATTTGATTGGATGCATGCGGAAACAATTTTTGCATAGCACAATATTTGGAAAAAATGAAAATAGCTTATTACATGTCGGTAAAGTGTTTTTCGCATATGTAGAGTTTATCCTCATTACTTCTTCAATTAATTCTAAAATCAGAAAACACATAAGCTCTTATACGATTAACACTTATTTAACTGTATATTCAAATCAGTTACTTCAATTAACTTGTTGATTCTTTCAGACATTGTCATCATGGGCGACTTCAAGTGTCGAAGAAGTTGCTTCCACTGGACCTGGAATCCGCTTTTTCCAGTTATACGTGAGCAACAAAAACATTTATTCTCTTAGTTCCATTTCTTCTTCACTTGAATTCTACGTGAAATAGTTAGTTTCTCTTATATTGTCATATGTTCTGTATTGGCCATGTTCTTTATTTAGGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAAGCTGGATTCAAGGCTATTGCCCTTACCGTTGATACTCCAAGACTTGGACGCAGAGAAGCTGATATCAAGAACAGGTAACTCGTTGCGGCTGTGTTGTGATTCTTAATATTGCAAAGAATCATATTTACATGAGGTTGATGCGGCCACAATTGCAATCACTATAACATAACTGAAATATTGCATTTATTGATAACTTGATCAATAAGGAATACAATAGACTCTATTTATACATGAGTTTCAGCTTTAATGTAATAAAGATTAATTATAAATTTTCTTTTACAGATTTGTTTTGCCACCATTTTTGACATTGAAGAATTTTGAAGGACTGAACCTTGGAAAGATGGACGAAGTAAGTGAGATCAATTATTACAAAATTAGTAACATAGTTTAATGGTCTTACCTCTATAATTAATATAATTGTTACCTTGGTCCATTTAGGCTAATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGTATGTTACAAGTAAAATCCATGTCACCAATTTGTTCGCTCAATTCGTTGTTTTTGATTGATAAGTAGCATGCATGCTGACATTAGAAAAACAAAAGAAAACACTACTTTTGGTTGTCATTTTTAGTCTACATAATGGAATTTTCAAGGTTCCAATAATTTAGTGTTGTTTTTGTTAATTTTGTGCAGGATGTGAAGTGGCTTCAGACTATCACCAGCCTTCCAATTCTTGTGAAGGGTGTACTCACTGCTGAGGATAGTAAGCAAAACAAAACCTGTTTGAGAATTCTATTAATACACTTTCTAACACATCTTTTTCGATACACTGTTATATTTAACACTTTTTTCAATAAGCTAGTACTAGGGTCTCGCATACATTATTTCATATAAAAGAAGTGATTACAACTAATTCACATAATTTAGTGAACTATAGATGAATTTTTTACGACTATTTTATTAATGGTTTGATGTAAATTTTGCAGCAAGGCTAGCAGTGCAAAGTGGTGCAGCTGGAATTATTGTGTCCAACCATGGAGCAAGACAACTTGATTATGTTCCAGCAACCATAAGTGCCTTAGAAGAGGTACTTTAAGAATGTCAAGCTATTATATAACTGAATTAATTGTATAAATCATTCTACATAATAAGATTGTTTATATCATAATTGTGTTGTTGACATTACTTAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCTGTATTTTTGGATGGAGGTGTACGCCGTGGAACCGATGTCTTCAAGGCTTTGGCACTTGGTGCCTCTGGCATATTTGTGAGTATACTCATAGCATTTCCCAATATTTTAAATTCTCATTGCCTCATTAGTAGTAATTTCTTAATTCGGATCGTCTATGGTCACAATGTCGACGCATTCATGTAGTTAACGGTTTGGAGCTGTTGTGACTCTTATTTTAAGCTCTCTAAGTCAACCATAAAAGCCAACTTTATCAAATTCGTTTGATTTTGATCAAACATCTCCAAAGTGTTGATTGCGCGTCTGAATTCATAATTCTTGAGTGGCTATAGTATCTATGAACCCTGTTAATCTTAAACACAATGGTTGAAATATGCGAGTAGTACCCTAGTTCGACCTCTGGCTGAAATAATCAGGAGTAATCATTGATCAACTTAATTTACCTCCCGACCAAACTTTTATTACGACAATTGTCTTCTATAATATATGGAGGATTAAGACGAACAAAACCAAAATAATTTATCGTTATAACCACCATTAGTACTGCCGTTATCTTAACGAACAAATTATGCAATGTCTAGATTGGACGCCCTGTGGTGTATTCTCTGGCTGCTGATGGAGAAGCTGGTGTAAGAAAGGTCCTTCAAATGTTACGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCACTCAAGGAAATCACTCGTGACCACATCGTTGCTGATTGGGACACCCCTCGTGTTAATCCTCGTGCCATACCAAGATTATGA

Protein sequence

>MS.gene063442.t1

MGEITNISEYEEIARQKLPKMAFDYYASGAEDQWTLQENRNAFSKILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDTRLAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL