AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028210 MtrunA17_Chr7g0247911 77.202 193 3 1 6 157 1 193 1.26e-87 257
Msa1028210 MtrunA17_Chr7g0247901 63.212 193 30 1 6 157 1 193 7.23e-71 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028210 AT2G45990.4 59.585 193 37 1 6 157 1 193 1.69e-68 207
Msa1028210 AT2G45990.3 59.585 193 37 1 6 157 1 193 5.56e-68 207
Msa1028210 AT2G45990.2 59.585 193 37 1 6 157 1 193 1.01e-67 207
Msa1028210 AT2G45990.1 59.585 193 37 1 6 157 1 193 1.01e-67 207

Find 44 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATCTGATAGACCTATT+TGG 0.294461 7_1:+60851385 Msa1028210:CDS
GCTTAAAGTTGAGGGTATAT+TGG 0.314406 7_1:+60851309 Msa1028210:CDS
TTTACTTGTGAGGTTGTTGC+TGG 0.317554 7_1:+60851075 Msa1028210:CDS
GTGCGACCGGTGGTGGAAAC+TGG 0.328384 7_1:+60851040 Msa1028210:CDS
CTCTATGCATTGGACTTTGA+TGG 0.336958 7_1:+60850547 Msa1028210:CDS
AGAATATATGGTCTAGGAAC+TGG 0.346676 7_1:+60851888 Msa1028210:CDS
CATCTCTGACCTTTCCAAAT+AGG 0.357874 7_1:-60851399 None:intergenic
TGGATTCATCCACAGAAGAT+TGG 0.401139 7_1:+60850794 Msa1028210:CDS
ATGTCAGGTGCGACCGGTGG+TGG 0.413077 7_1:+60851033 Msa1028210:intron
TTCCATTCTTCCATGACAAT+GGG 0.419686 7_1:-60851352 None:intergenic
TTGAGATGGCCAGACTTGTT+TGG 0.420722 7_1:+60850766 Msa1028210:CDS
TGAAAGGAAGAGAAGGAAAT+GGG 0.433788 7_1:+60850520 Msa1028210:intron
ATACCACCAGAGAGAATATA+TGG 0.441088 7_1:+60851876 Msa1028210:CDS
GCTTTACTTAGAGAACTTGC+TGG 0.454086 7_1:+60851846 Msa1028210:CDS
TCCACACTGCCAAACAAGTC+TGG 0.458820 7_1:-60850775 None:intergenic
TCAAATCTCATTTGAATGGC+GGG 0.466609 7_1:+60850442 None:intergenic
CCTAGACCATATATTCTCTC+TGG 0.470653 7_1:-60851882 None:intergenic
TTGAAAGGAAGAGAAGGAAA+TGG 0.483186 7_1:+60850519 Msa1028210:intron
ATTCCATTCTTCCATGACAA+TGG 0.501028 7_1:-60851353 None:intergenic
TTGAGGGTATATTGGAGGAC+TGG 0.519493 7_1:+60851317 Msa1028210:CDS
GCCAGACTTGTTTGGCAGTG+TGG 0.523053 7_1:+60850774 Msa1028210:CDS
TCATATCCAGTTTCCACCAC+CGG 0.529897 7_1:-60851046 None:intergenic
TAAAGTTGAGGGTATATTGG+AGG 0.535863 7_1:+60851312 Msa1028210:CDS
AGCCCATTGTCATGGAAGAA+TGG 0.536844 7_1:+60851350 Msa1028210:CDS
ACTCACTGATGACTTTCTGA+TGG 0.538468 7_1:-60851113 None:intergenic
AATGGGGCATCTCTATGCAT+TGG 0.539644 7_1:+60850537 Msa1028210:CDS
TTCTTCTGAAAGGTGGCAGA+GGG 0.540584 7_1:+60851286 Msa1028210:intron
CAAATTGAAGCCCATTGTCA+TGG 0.542285 7_1:+60851342 Msa1028210:CDS
TGCAGGCAGCTAAGTTGAGA+TGG 0.553252 7_1:+60850752 Msa1028210:intron
GGCAGAGGGGCTTAAAGTTG+AGG 0.554476 7_1:+60851300 Msa1028210:CDS
TTCATGTCAGGTGCGACCGG+TGG 0.564118 7_1:+60851030 Msa1028210:intron
ACTGATGACTTTCTGATGGA+AGG 0.565784 7_1:-60851109 None:intergenic
GACAGCTATCTCAGCTCTCA+AGG 0.573429 7_1:+60850594 Msa1028210:CDS
GCAGAGGGGCTTAAAGTTGA+GGG 0.574411 7_1:+60851301 Msa1028210:CDS
TTCAACAATCCAATCTTCTG+TGG 0.576144 7_1:-60850803 None:intergenic
CCAGAGAGAATATATGGTCT+AGG 0.578822 7_1:+60851882 Msa1028210:CDS
GAATATATGGTCTAGGAACT+GGG 0.583865 7_1:+60851889 Msa1028210:CDS
GTTCTTCTGAAAGGTGGCAG+AGG 0.593902 7_1:+60851285 Msa1028210:intron
AAGTTCTCTAAGTAAAGCAT+CGG 0.602912 7_1:-60851841 None:intergenic
TCTGATAGACCTATTTGGAA+AGG 0.618657 7_1:+60851390 Msa1028210:CDS
AGACCATATATTCTCTCTGG+TGG 0.638617 7_1:-60851879 None:intergenic
GGAGTTCTCTGTGATACATG+TGG 0.686150 7_1:+60850568 Msa1028210:CDS
GAAAGGAAGAGAAGGAAATG+GGG 0.690659 7_1:+60850521 Msa1028210:intron
TCTTCTGAAAGGTGGCAGAG+GGG 0.709844 7_1:+60851287 Msa1028210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATATCATATTTTGAT+TGG + chr7_1:60850485-60850504 Msa1028210:intron 10.0%
!!! TTAATATATCATATTTTGAT+TGG + chr7_1:60850485-60850504 Msa1028210:intron 10.0%
!!! GTTGTCAAATAATTAATTTT+TGG + chr7_1:60851603-60851622 Msa1028210:intron 15.0%
!!! AGTATTGCTATTTTTTTATT+TGG + chr7_1:60851914-60851933 Msa1028210:intron 15.0%
!!! TATTTTATTTTTGTAGAAAG+AGG + chr7_1:60852348-60852367 Msa1028210:intron 15.0%
!!! ATTTTATTTTTGTAGAAAGA+GGG + chr7_1:60852349-60852368 Msa1028210:intron 15.0%
!!! GTTGTCAAATAATTAATTTT+TGG + chr7_1:60851603-60851622 Msa1028210:intron 15.0%
!!! AGTATTGCTATTTTTTTATT+TGG + chr7_1:60851914-60851933 Msa1028210:intron 15.0%
!!! TATTTTATTTTTGTAGAAAG+AGG + chr7_1:60852348-60852367 Msa1028210:intron 15.0%
!!! ATTTTATTTTTGTAGAAAGA+GGG + chr7_1:60852349-60852368 Msa1028210:intron 15.0%
!! TATGATATATTAAGATTGCA+TGG - chr7_1:60850478-60850497 None:intergenic 20.0%
!!! TATCATATTTTGATTGGTTT+TGG + chr7_1:60850491-60850510 Msa1028210:intron 20.0%
!!! TTGCTTTTGATTTTTTATCA+TGG + chr7_1:60851179-60851198 Msa1028210:intron 20.0%
!! ATTAATTATTTGACAACACT+TGG - chr7_1:60851600-60851619 None:intergenic 20.0%
!! AAAAAAAAGAATATTGCAGA+CGG + chr7_1:60852201-60852220 Msa1028210:intron 20.0%
!! ACAACAAAACATATTTGTTT+AGG + chr7_1:60852243-60852262 Msa1028210:intron 20.0%
!! CAACAAAACATATTTGTTTA+GGG + chr7_1:60852244-60852263 Msa1028210:intron 20.0%
!! AACAAAACATATTTGTTTAG+GGG + chr7_1:60852245-60852264 Msa1028210:intron 20.0%
!! TATGATATATTAAGATTGCA+TGG - chr7_1:60850478-60850497 None:intergenic 20.0%
!!! TATCATATTTTGATTGGTTT+TGG + chr7_1:60850491-60850510 Msa1028210:intron 20.0%
!!! TTGCTTTTGATTTTTTATCA+TGG + chr7_1:60851179-60851198 Msa1028210:intron 20.0%
!! ATTAATTATTTGACAACACT+TGG - chr7_1:60851600-60851619 None:intergenic 20.0%
!! AAAAAAAAGAATATTGCAGA+CGG + chr7_1:60852201-60852220 Msa1028210:intron 20.0%
!! ACAACAAAACATATTTGTTT+AGG + chr7_1:60852243-60852262 Msa1028210:intron 20.0%
!! CAACAAAACATATTTGTTTA+GGG + chr7_1:60852244-60852263 Msa1028210:intron 20.0%
!! AACAAAACATATTTGTTTAG+GGG + chr7_1:60852245-60852264 Msa1028210:intron 20.0%
!!! GTTGTTTTCTTGCATTTTAT+TGG - chr7_1:60850634-60850653 None:intergenic 25.0%
!!! ATATGGTTTTGGACATTTTT+TGG + chr7_1:60850694-60850713 Msa1028210:intron 25.0%
!! TATATTGTTTGATGATTTGC+AGG + chr7_1:60850735-60850754 Msa1028210:intron 25.0%
! AACACAGTTAAACTCTAATT+TGG - chr7_1:60850922-60850941 None:intergenic 25.0%
! AAATTAGAGTTTAACTGTGT+TGG + chr7_1:60850921-60850940 Msa1028210:intron 25.0%
!!! AACTTAAGTTTTTTCATGTC+AGG + chr7_1:60851018-60851037 Msa1028210:intron 25.0%
! GAGTATAAAACTATAAACCA+TGG + chr7_1:60851132-60851151 Msa1028210:intron 25.0%
!!! AACCATGGCTTTAAATTTTT+TGG + chr7_1:60851147-60851166 Msa1028210:intron 25.0%
! AACATTATCATCAGATTCTA+AGG + chr7_1:60851221-60851240 Msa1028210:intron 25.0%
!! CAATATATGTAGGACTTTTA+GGG - chr7_1:60851753-60851772 None:intergenic 25.0%
!! TCAATATATGTAGGACTTTT+AGG - chr7_1:60851754-60851773 None:intergenic 25.0%
! AAAGTGCATAGAAAATTCAA+AGG - chr7_1:60851789-60851808 None:intergenic 25.0%
!!! GTTGTTTTCTTGCATTTTAT+TGG - chr7_1:60850634-60850653 None:intergenic 25.0%
!!! ATATGGTTTTGGACATTTTT+TGG + chr7_1:60850694-60850713 Msa1028210:intron 25.0%
!! TATATTGTTTGATGATTTGC+AGG + chr7_1:60850735-60850754 Msa1028210:intron 25.0%
! AACACAGTTAAACTCTAATT+TGG - chr7_1:60850922-60850941 None:intergenic 25.0%
! AAATTAGAGTTTAACTGTGT+TGG + chr7_1:60850921-60850940 Msa1028210:intron 25.0%
!!! AACTTAAGTTTTTTCATGTC+AGG + chr7_1:60851018-60851037 Msa1028210:intron 25.0%
! GAGTATAAAACTATAAACCA+TGG + chr7_1:60851132-60851151 Msa1028210:intron 25.0%
!!! AACCATGGCTTTAAATTTTT+TGG + chr7_1:60851147-60851166 Msa1028210:intron 25.0%
! AACATTATCATCAGATTCTA+AGG + chr7_1:60851221-60851240 Msa1028210:intron 25.0%
!! CAATATATGTAGGACTTTTA+GGG - chr7_1:60851753-60851772 None:intergenic 25.0%
!! TCAATATATGTAGGACTTTT+AGG - chr7_1:60851754-60851773 None:intergenic 25.0%
! AAAGTGCATAGAAAATTCAA+AGG - chr7_1:60851789-60851808 None:intergenic 25.0%
!!! TTGGTTTTGGTAACATTGAA+AGG + chr7_1:60850504-60850523 Msa1028210:intron 30.0%
TGATCACATTCAGTTTCATA+TGG + chr7_1:60850677-60850696 Msa1028210:intron 30.0%
! CATTCAGTTTCATATGGTTT+TGG + chr7_1:60850683-60850702 Msa1028210:intron 30.0%
!! ACAATCTTGAATTTGCTAGA+AGG + chr7_1:60850970-60850989 Msa1028210:intron 30.0%
! ATGAAACTCTTTTACTTGTG+AGG + chr7_1:60851065-60851084 Msa1028210:CDS 30.0%
! CACCAAAAAATTTAAAGCCA+TGG - chr7_1:60851152-60851171 None:intergenic 30.0%
! TAGAAAATTCAAAGGCACAA+GGG - chr7_1:60851781-60851800 None:intergenic 30.0%
! ATAGAAAATTCAAAGGCACA+AGG - chr7_1:60851782-60851801 None:intergenic 30.0%
AAGTTCTCTAAGTAAAGCAT+CGG - chr7_1:60851844-60851863 None:intergenic 30.0%
CAAAAAAGACAAGATGGTTT+GGG - chr7_1:60851972-60851991 None:intergenic 30.0%
TGAAACCAAAAAAGACAAGA+TGG - chr7_1:60851978-60851997 None:intergenic 30.0%
TTAATCCCATCTGCAATATT+CGG - chr7_1:60852310-60852329 None:intergenic 30.0%
!!! TTGGTTTTGGTAACATTGAA+AGG + chr7_1:60850504-60850523 Msa1028210:intron 30.0%
TGATCACATTCAGTTTCATA+TGG + chr7_1:60850677-60850696 Msa1028210:intron 30.0%
! CATTCAGTTTCATATGGTTT+TGG + chr7_1:60850683-60850702 Msa1028210:intron 30.0%
!! ACAATCTTGAATTTGCTAGA+AGG + chr7_1:60850970-60850989 Msa1028210:intron 30.0%
! ATGAAACTCTTTTACTTGTG+AGG + chr7_1:60851065-60851084 Msa1028210:CDS 30.0%
! CACCAAAAAATTTAAAGCCA+TGG - chr7_1:60851152-60851171 None:intergenic 30.0%
! TAGAAAATTCAAAGGCACAA+GGG - chr7_1:60851781-60851800 None:intergenic 30.0%
! ATAGAAAATTCAAAGGCACA+AGG - chr7_1:60851782-60851801 None:intergenic 30.0%
AAGTTCTCTAAGTAAAGCAT+CGG - chr7_1:60851844-60851863 None:intergenic 30.0%
CAAAAAAGACAAGATGGTTT+GGG - chr7_1:60851972-60851991 None:intergenic 30.0%
TGAAACCAAAAAAGACAAGA+TGG - chr7_1:60851978-60851997 None:intergenic 30.0%
TTAATCCCATCTGCAATATT+CGG - chr7_1:60852310-60852329 None:intergenic 30.0%
GTAACATTGAAAGGAAGAGA+AGG + chr7_1:60850513-60850532 Msa1028210:intron 35.0%
TTGAAAGGAAGAGAAGGAAA+TGG + chr7_1:60850519-60850538 Msa1028210:intron 35.0%
TGAAAGGAAGAGAAGGAAAT+GGG + chr7_1:60850520-60850539 Msa1028210:intron 35.0%
! TTGCATTTTATTGGTGAGAG+AGG - chr7_1:60850625-60850644 None:intergenic 35.0%
TTCAACAATCCAATCTTCTG+TGG - chr7_1:60850806-60850825 None:intergenic 35.0%
GAACTATGTCATCAGTCAAA+TGG - chr7_1:60851269-60851288 None:intergenic 35.0%
GATGACATAGTTCTTCTGAA+AGG + chr7_1:60851276-60851295 Msa1028210:intron 35.0%
! GCTTAAAGTTGAGGGTATAT+TGG + chr7_1:60851309-60851328 Msa1028210:CDS 35.0%
! TAAAGTTGAGGGTATATTGG+AGG + chr7_1:60851312-60851331 Msa1028210:CDS 35.0%
TTCCATTCTTCCATGACAAT+GGG - chr7_1:60851355-60851374 None:intergenic 35.0%
ATTCCATTCTTCCATGACAA+TGG - chr7_1:60851356-60851375 None:intergenic 35.0%
GATGATCTGATAGACCTATT+TGG + chr7_1:60851385-60851404 Msa1028210:CDS 35.0%
TCTGATAGACCTATTTGGAA+AGG + chr7_1:60851390-60851409 Msa1028210:CDS 35.0%
TGGTACTAAATCACATGTTG+CGG - chr7_1:60851580-60851599 None:intergenic 35.0%
TTTACCTCTAGATTCTATCC+CGG + chr7_1:60851630-60851649 Msa1028210:intron 35.0%
! AAGGGCATGTCAATATATGT+AGG - chr7_1:60851763-60851782 None:intergenic 35.0%
CTATCCTTTCTATGGTTTCA+GGG + chr7_1:60851810-60851829 Msa1028210:intron 35.0%
ATACCACCAGAGAGAATATA+TGG + chr7_1:60851876-60851895 Msa1028210:CDS 35.0%
AGAATATATGGTCTAGGAAC+TGG + chr7_1:60851888-60851907 Msa1028210:CDS 35.0%
GAATATATGGTCTAGGAACT+GGG + chr7_1:60851889-60851908 Msa1028210:CDS 35.0%
CCAAAAAAGACAAGATGGTT+TGG - chr7_1:60851973-60851992 None:intergenic 35.0%
!!! CCAAACCATCTTGTCTTTTT+TGG + chr7_1:60851970-60851989 Msa1028210:intron 35.0%
!!! CTTTTTTGGTTTCAGTCCTA+AGG + chr7_1:60851984-60852003 Msa1028210:intron 35.0%
! TTCTTCAGTGTTTCTACCTT+AGG - chr7_1:60852003-60852022 None:intergenic 35.0%
AAAAAATGCCAGAACACCAA+GGG + chr7_1:60852028-60852047 Msa1028210:intron 35.0%
AAAGAATATTGCAGACGGAA+TGG + chr7_1:60852206-60852225 Msa1028210:intron 35.0%
AAGAATATTGCAGACGGAAT+GGG + chr7_1:60852207-60852226 Msa1028210:intron 35.0%
TAAAACCCAAGATGCTTTGT+CGG - chr7_1:60852272-60852291 None:intergenic 35.0%
TAAGAACCGAATATTGCAGA+TGG + chr7_1:60852301-60852320 Msa1028210:intron 35.0%
AAGAACCGAATATTGCAGAT+GGG + chr7_1:60852302-60852321 Msa1028210:intron 35.0%
GTAACATTGAAAGGAAGAGA+AGG + chr7_1:60850513-60850532 Msa1028210:intron 35.0%
TTGAAAGGAAGAGAAGGAAA+TGG + chr7_1:60850519-60850538 Msa1028210:intron 35.0%
TGAAAGGAAGAGAAGGAAAT+GGG + chr7_1:60850520-60850539 Msa1028210:intron 35.0%
! TTGCATTTTATTGGTGAGAG+AGG - chr7_1:60850625-60850644 None:intergenic 35.0%
TTCAACAATCCAATCTTCTG+TGG - chr7_1:60850806-60850825 None:intergenic 35.0%
GAACTATGTCATCAGTCAAA+TGG - chr7_1:60851269-60851288 None:intergenic 35.0%
GATGACATAGTTCTTCTGAA+AGG + chr7_1:60851276-60851295 Msa1028210:intron 35.0%
! GCTTAAAGTTGAGGGTATAT+TGG + chr7_1:60851309-60851328 Msa1028210:CDS 35.0%
! TAAAGTTGAGGGTATATTGG+AGG + chr7_1:60851312-60851331 Msa1028210:CDS 35.0%
TTCCATTCTTCCATGACAAT+GGG - chr7_1:60851355-60851374 None:intergenic 35.0%
ATTCCATTCTTCCATGACAA+TGG - chr7_1:60851356-60851375 None:intergenic 35.0%
GATGATCTGATAGACCTATT+TGG + chr7_1:60851385-60851404 Msa1028210:CDS 35.0%
TCTGATAGACCTATTTGGAA+AGG + chr7_1:60851390-60851409 Msa1028210:CDS 35.0%
TGGTACTAAATCACATGTTG+CGG - chr7_1:60851580-60851599 None:intergenic 35.0%
TTTACCTCTAGATTCTATCC+CGG + chr7_1:60851630-60851649 Msa1028210:intron 35.0%
! AAGGGCATGTCAATATATGT+AGG - chr7_1:60851763-60851782 None:intergenic 35.0%
CTATCCTTTCTATGGTTTCA+GGG + chr7_1:60851810-60851829 Msa1028210:intron 35.0%
ATACCACCAGAGAGAATATA+TGG + chr7_1:60851876-60851895 Msa1028210:CDS 35.0%
AGAATATATGGTCTAGGAAC+TGG + chr7_1:60851888-60851907 Msa1028210:CDS 35.0%
GAATATATGGTCTAGGAACT+GGG + chr7_1:60851889-60851908 Msa1028210:CDS 35.0%
CCAAAAAAGACAAGATGGTT+TGG - chr7_1:60851973-60851992 None:intergenic 35.0%
!!! CCAAACCATCTTGTCTTTTT+TGG + chr7_1:60851970-60851989 Msa1028210:intron 35.0%
!!! CTTTTTTGGTTTCAGTCCTA+AGG + chr7_1:60851984-60852003 Msa1028210:intron 35.0%
! TTCTTCAGTGTTTCTACCTT+AGG - chr7_1:60852003-60852022 None:intergenic 35.0%
AAAAAATGCCAGAACACCAA+GGG + chr7_1:60852028-60852047 Msa1028210:intron 35.0%
AAAGAATATTGCAGACGGAA+TGG + chr7_1:60852206-60852225 Msa1028210:intron 35.0%
AAGAATATTGCAGACGGAAT+GGG + chr7_1:60852207-60852226 Msa1028210:intron 35.0%
TAAAACCCAAGATGCTTTGT+CGG - chr7_1:60852272-60852291 None:intergenic 35.0%
TAAGAACCGAATATTGCAGA+TGG + chr7_1:60852301-60852320 Msa1028210:intron 35.0%
AAGAACCGAATATTGCAGAT+GGG + chr7_1:60852302-60852321 Msa1028210:intron 35.0%
GAAAGGAAGAGAAGGAAATG+GGG + chr7_1:60850521-60850540 Msa1028210:intron 40.0%
CTCTATGCATTGGACTTTGA+TGG + chr7_1:60850547-60850566 Msa1028210:CDS 40.0%
TGGATTCATCCACAGAAGAT+TGG + chr7_1:60850794-60850813 Msa1028210:CDS 40.0%
TTTACTTGTGAGGTTGTTGC+TGG + chr7_1:60851075-60851094 Msa1028210:CDS 40.0%
ACTGATGACTTTCTGATGGA+AGG - chr7_1:60851112-60851131 None:intergenic 40.0%
ACTCACTGATGACTTTCTGA+TGG - chr7_1:60851116-60851135 None:intergenic 40.0%
! GACATAGTTCTTCTGAAAGG+TGG + chr7_1:60851279-60851298 Msa1028210:intron 40.0%
CAAATTGAAGCCCATTGTCA+TGG + chr7_1:60851342-60851361 Msa1028210:CDS 40.0%
CATCTCTGACCTTTCCAAAT+AGG - chr7_1:60851402-60851421 None:intergenic 40.0%
TTGGAAAGGTCAGAGATGAT+TGG + chr7_1:60851404-60851423 Msa1028210:intron 40.0%
AAAGGTCAGAGATGATTGGT+TGG + chr7_1:60851408-60851427 Msa1028210:intron 40.0%
CACATGTTGCGGAACAATAA+TGG - chr7_1:60851569-60851588 None:intergenic 40.0%
TCTTAATGCATCAGCAACAC+CGG - chr7_1:60851652-60851671 None:intergenic 40.0%
GTACATTGTCACCACAAAAC+AGG + chr7_1:60851689-60851708 Msa1028210:intron 40.0%
AGGGTTATTGTCTTCATGCT+AGG - chr7_1:60851734-60851753 None:intergenic 40.0%
GCACTTTCCTATCCTTTCTA+TGG + chr7_1:60851802-60851821 Msa1028210:intron 40.0%
CCTGAAACCATAGAAAGGAT+AGG - chr7_1:60851812-60851831 None:intergenic 40.0%
CCTATCCTTTCTATGGTTTC+AGG + chr7_1:60851809-60851828 Msa1028210:intron 40.0%
GCTTTACTTAGAGAACTTGC+TGG + chr7_1:60851846-60851865 Msa1028210:CDS 40.0%
AGACCATATATTCTCTCTGG+TGG - chr7_1:60851882-60851901 None:intergenic 40.0%
CCTAGACCATATATTCTCTC+TGG - chr7_1:60851885-60851904 None:intergenic 40.0%
CCAGAGAGAATATATGGTCT+AGG + chr7_1:60851882-60851901 Msa1028210:CDS 40.0%
! TGGGAAATAGCAAAGGCATA+AGG - chr7_1:60851953-60851972 None:intergenic 40.0%
! GATGGTTTGGGAAATAGCAA+AGG - chr7_1:60851960-60851979 None:intergenic 40.0%
CAAAAAATGCCAGAACACCA+AGG + chr7_1:60852027-60852046 Msa1028210:intron 40.0%
GAAAGGAAGAGAAGGAAATG+GGG + chr7_1:60850521-60850540 Msa1028210:intron 40.0%
CTCTATGCATTGGACTTTGA+TGG + chr7_1:60850547-60850566 Msa1028210:CDS 40.0%
TGGATTCATCCACAGAAGAT+TGG + chr7_1:60850794-60850813 Msa1028210:CDS 40.0%
TTTACTTGTGAGGTTGTTGC+TGG + chr7_1:60851075-60851094 Msa1028210:CDS 40.0%
ACTGATGACTTTCTGATGGA+AGG - chr7_1:60851112-60851131 None:intergenic 40.0%
ACTCACTGATGACTTTCTGA+TGG - chr7_1:60851116-60851135 None:intergenic 40.0%
! GACATAGTTCTTCTGAAAGG+TGG + chr7_1:60851279-60851298 Msa1028210:intron 40.0%
CAAATTGAAGCCCATTGTCA+TGG + chr7_1:60851342-60851361 Msa1028210:CDS 40.0%
CATCTCTGACCTTTCCAAAT+AGG - chr7_1:60851402-60851421 None:intergenic 40.0%
TTGGAAAGGTCAGAGATGAT+TGG + chr7_1:60851404-60851423 Msa1028210:intron 40.0%
AAAGGTCAGAGATGATTGGT+TGG + chr7_1:60851408-60851427 Msa1028210:intron 40.0%
CACATGTTGCGGAACAATAA+TGG - chr7_1:60851569-60851588 None:intergenic 40.0%
TCTTAATGCATCAGCAACAC+CGG - chr7_1:60851652-60851671 None:intergenic 40.0%
GTACATTGTCACCACAAAAC+AGG + chr7_1:60851689-60851708 Msa1028210:intron 40.0%
AGGGTTATTGTCTTCATGCT+AGG - chr7_1:60851734-60851753 None:intergenic 40.0%
GCACTTTCCTATCCTTTCTA+TGG + chr7_1:60851802-60851821 Msa1028210:intron 40.0%
CCTGAAACCATAGAAAGGAT+AGG - chr7_1:60851812-60851831 None:intergenic 40.0%
CCTATCCTTTCTATGGTTTC+AGG + chr7_1:60851809-60851828 Msa1028210:intron 40.0%
GCTTTACTTAGAGAACTTGC+TGG + chr7_1:60851846-60851865 Msa1028210:CDS 40.0%
AGACCATATATTCTCTCTGG+TGG - chr7_1:60851882-60851901 None:intergenic 40.0%
CCTAGACCATATATTCTCTC+TGG - chr7_1:60851885-60851904 None:intergenic 40.0%
CCAGAGAGAATATATGGTCT+AGG + chr7_1:60851882-60851901 Msa1028210:CDS 40.0%
! TGGGAAATAGCAAAGGCATA+AGG - chr7_1:60851953-60851972 None:intergenic 40.0%
! GATGGTTTGGGAAATAGCAA+AGG - chr7_1:60851960-60851979 None:intergenic 40.0%
CAAAAAATGCCAGAACACCA+AGG + chr7_1:60852027-60852046 Msa1028210:intron 40.0%
! AATGGGGCATCTCTATGCAT+TGG + chr7_1:60850537-60850556 Msa1028210:CDS 45.0%
GGAGTTCTCTGTGATACATG+TGG + chr7_1:60850568-60850587 Msa1028210:CDS 45.0%
! TTGAGATGGCCAGACTTGTT+TGG + chr7_1:60850766-60850785 Msa1028210:CDS 45.0%
TTCACCTCTAGCATAGTGCT+TGG - chr7_1:60850950-60850969 None:intergenic 45.0%
! TTTTTCATGTCAGGTGCGAC+CGG + chr7_1:60851027-60851046 Msa1028210:intron 45.0%
TCATATCCAGTTTCCACCAC+CGG - chr7_1:60851049-60851068 None:intergenic 45.0%
! TTCTTCTGAAAGGTGGCAGA+GGG + chr7_1:60851286-60851305 Msa1028210:intron 45.0%
! TTGAGGGTATATTGGAGGAC+TGG + chr7_1:60851317-60851336 Msa1028210:CDS 45.0%
AGCCCATTGTCATGGAAGAA+TGG + chr7_1:60851350-60851369 Msa1028210:CDS 45.0%
! GATTTCGCTGGTTGGATTCA+AGG + chr7_1:60851436-60851455 Msa1028210:intron 45.0%
CTGGTTGGATTCAAGGAAAC+AGG + chr7_1:60851443-60851462 Msa1028210:intron 45.0%
TCTACTGCGTTGTAACGCTA+TGG - chr7_1:60851535-60851554 None:intergenic 45.0%
AACACCGGGATAGAATCTAG+AGG - chr7_1:60851637-60851656 None:intergenic 45.0%
CTTAATGCATCAGCAACACC+GGG - chr7_1:60851651-60851670 None:intergenic 45.0%
! GAGAAGTCAGACCTGTTTTG+TGG - chr7_1:60851703-60851722 None:intergenic 45.0%
TTAACTGTAGTGTCAGCCCT+TGG - chr7_1:60852047-60852066 None:intergenic 45.0%
! AATGGGGCATCTCTATGCAT+TGG + chr7_1:60850537-60850556 Msa1028210:CDS 45.0%
GGAGTTCTCTGTGATACATG+TGG + chr7_1:60850568-60850587 Msa1028210:CDS 45.0%
! TTGAGATGGCCAGACTTGTT+TGG + chr7_1:60850766-60850785 Msa1028210:CDS 45.0%
TTCACCTCTAGCATAGTGCT+TGG - chr7_1:60850950-60850969 None:intergenic 45.0%
! TTTTTCATGTCAGGTGCGAC+CGG + chr7_1:60851027-60851046 Msa1028210:intron 45.0%
TCATATCCAGTTTCCACCAC+CGG - chr7_1:60851049-60851068 None:intergenic 45.0%
! TTCTTCTGAAAGGTGGCAGA+GGG + chr7_1:60851286-60851305 Msa1028210:intron 45.0%
! TTGAGGGTATATTGGAGGAC+TGG + chr7_1:60851317-60851336 Msa1028210:CDS 45.0%
AGCCCATTGTCATGGAAGAA+TGG + chr7_1:60851350-60851369 Msa1028210:CDS 45.0%
! GATTTCGCTGGTTGGATTCA+AGG + chr7_1:60851436-60851455 Msa1028210:intron 45.0%
CTGGTTGGATTCAAGGAAAC+AGG + chr7_1:60851443-60851462 Msa1028210:intron 45.0%
TCTACTGCGTTGTAACGCTA+TGG - chr7_1:60851535-60851554 None:intergenic 45.0%
AACACCGGGATAGAATCTAG+AGG - chr7_1:60851637-60851656 None:intergenic 45.0%
CTTAATGCATCAGCAACACC+GGG - chr7_1:60851651-60851670 None:intergenic 45.0%
! GAGAAGTCAGACCTGTTTTG+TGG - chr7_1:60851703-60851722 None:intergenic 45.0%
TTAACTGTAGTGTCAGCCCT+TGG - chr7_1:60852047-60852066 None:intergenic 45.0%
!! AAAGTAAATAAATATAATTA+TGG + chr7_1:60850835-60850854 Msa1028210:intron 5.0%
!! ATAAAATAAAATAATTAACA+GGG - chr7_1:60852336-60852355 None:intergenic 5.0%
!! AATAAAATAAAATAATTAAC+AGG - chr7_1:60852337-60852356 None:intergenic 5.0%
!! AAAGTAAATAAATATAATTA+TGG + chr7_1:60850835-60850854 Msa1028210:intron 5.0%
!! ATAAAATAAAATAATTAACA+GGG - chr7_1:60852336-60852355 None:intergenic 5.0%
!! AATAAAATAAAATAATTAAC+AGG - chr7_1:60852337-60852356 None:intergenic 5.0%
GACAGCTATCTCAGCTCTCA+AGG + chr7_1:60850594-60850613 Msa1028210:CDS 50.0%
! TGCAGGCAGCTAAGTTGAGA+TGG + chr7_1:60850752-60850771 Msa1028210:intron 50.0%
TCCACACTGCCAAACAAGTC+TGG - chr7_1:60850778-60850797 None:intergenic 50.0%
GTAGCCAAGCACTATGCTAG+AGG + chr7_1:60850943-60850962 Msa1028210:intron 50.0%
! GTTCTTCTGAAAGGTGGCAG+AGG + chr7_1:60851285-60851304 Msa1028210:intron 50.0%
! TCTTCTGAAAGGTGGCAGAG+GGG + chr7_1:60851287-60851306 Msa1028210:intron 50.0%
GCAGAGGGGCTTAAAGTTGA+GGG + chr7_1:60851301-60851320 Msa1028210:CDS 50.0%
TGGTTGGAGAACGATTTCGC+TGG + chr7_1:60851424-60851443 Msa1028210:intron 50.0%
TGGAGAACGATTTCGCTGGT+TGG + chr7_1:60851428-60851447 Msa1028210:intron 50.0%
GCGACCCTGAAACCATAGAA+AGG - chr7_1:60851817-60851836 None:intergenic 50.0%
TATTGCAGACGGAATGGGAC+TGG + chr7_1:60852212-60852231 Msa1028210:intron 50.0%
GACAGCTATCTCAGCTCTCA+AGG + chr7_1:60850594-60850613 Msa1028210:CDS 50.0%
! TGCAGGCAGCTAAGTTGAGA+TGG + chr7_1:60850752-60850771 Msa1028210:intron 50.0%
TCCACACTGCCAAACAAGTC+TGG - chr7_1:60850778-60850797 None:intergenic 50.0%
GTAGCCAAGCACTATGCTAG+AGG + chr7_1:60850943-60850962 Msa1028210:intron 50.0%
! GTTCTTCTGAAAGGTGGCAG+AGG + chr7_1:60851285-60851304 Msa1028210:intron 50.0%
! TCTTCTGAAAGGTGGCAGAG+GGG + chr7_1:60851287-60851306 Msa1028210:intron 50.0%
GCAGAGGGGCTTAAAGTTGA+GGG + chr7_1:60851301-60851320 Msa1028210:CDS 50.0%
TGGTTGGAGAACGATTTCGC+TGG + chr7_1:60851424-60851443 Msa1028210:intron 50.0%
TGGAGAACGATTTCGCTGGT+TGG + chr7_1:60851428-60851447 Msa1028210:intron 50.0%
GCGACCCTGAAACCATAGAA+AGG - chr7_1:60851817-60851836 None:intergenic 50.0%
TATTGCAGACGGAATGGGAC+TGG + chr7_1:60852212-60852231 Msa1028210:intron 50.0%
! GCCAGACTTGTTTGGCAGTG+TGG + chr7_1:60850774-60850793 Msa1028210:CDS 55.0%
GGCAGAGGGGCTTAAAGTTG+AGG + chr7_1:60851300-60851319 Msa1028210:CDS 55.0%
!! AGTGTCAGCCCTTGGTGTTC+TGG - chr7_1:60852039-60852058 None:intergenic 55.0%
! AGGGGACCGACAAAGCATCT+TGG + chr7_1:60852263-60852282 Msa1028210:intron 55.0%
! GGGGACCGACAAAGCATCTT+GGG + chr7_1:60852264-60852283 Msa1028210:intron 55.0%
! GCCAGACTTGTTTGGCAGTG+TGG + chr7_1:60850774-60850793 Msa1028210:CDS 55.0%
GGCAGAGGGGCTTAAAGTTG+AGG + chr7_1:60851300-60851319 Msa1028210:CDS 55.0%
!! AGTGTCAGCCCTTGGTGTTC+TGG - chr7_1:60852039-60852058 None:intergenic 55.0%
! AGGGGACCGACAAAGCATCT+TGG + chr7_1:60852263-60852282 Msa1028210:intron 55.0%
! GGGGACCGACAAAGCATCTT+GGG + chr7_1:60852264-60852283 Msa1028210:intron 55.0%
TTCATGTCAGGTGCGACCGG+TGG + chr7_1:60851030-60851049 Msa1028210:intron 60.0%
TTCATGTCAGGTGCGACCGG+TGG + chr7_1:60851030-60851049 Msa1028210:intron 60.0%
ATGTCAGGTGCGACCGGTGG+TGG + chr7_1:60851033-60851052 Msa1028210:intron 65.0%
!! GTGCGACCGGTGGTGGAAAC+TGG + chr7_1:60851040-60851059 Msa1028210:CDS 65.0%
ATGTCAGGTGCGACCGGTGG+TGG + chr7_1:60851033-60851052 Msa1028210:intron 65.0%
!! GTGCGACCGGTGGTGGAAAC+TGG + chr7_1:60851040-60851059 Msa1028210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60850457 60852381 60850457 ID=Msa1028210;Name=Msa1028210
chr7_1 mRNA 60850457 60852381 60850457 ID=Msa1028210-mRNA-1;Parent=Msa1028210;Name=Msa1028210-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.42|0.25|0.87|1|1|8|0|160
chr7_1 exon 60850457 60850463 60850457 ID=Msa1028210-mRNA-1:exon:12725;Parent=Msa1028210-mRNA-1
chr7_1 exon 60850530 60850615 60850530 ID=Msa1028210-mRNA-1:exon:12726;Parent=Msa1028210-mRNA-1
chr7_1 exon 60850757 60850837 60850757 ID=Msa1028210-mRNA-1:exon:12727;Parent=Msa1028210-mRNA-1
chr7_1 exon 60851040 60851129 60851040 ID=Msa1028210-mRNA-1:exon:12728;Parent=Msa1028210-mRNA-1
chr7_1 exon 60851298 60851411 60851298 ID=Msa1028210-mRNA-1:exon:12729;Parent=Msa1028210-mRNA-1
chr7_1 exon 60851831 60851910 60851831 ID=Msa1028210-mRNA-1:exon:12730;Parent=Msa1028210-mRNA-1
chr7_1 exon 60851999 60852005 60851999 ID=Msa1028210-mRNA-1:exon:12731;Parent=Msa1028210-mRNA-1
chr7_1 exon 60852364 60852381 60852364 ID=Msa1028210-mRNA-1:exon:12732;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60850457 60850463 60850457 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60850530 60850615 60850530 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60850757 60850837 60850757 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60851040 60851129 60851040 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60851298 60851411 60851298 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60851831 60851910 60851831 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60851999 60852005 60851999 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
chr7_1 CDS 60852364 60852381 60852364 ID=Msa1028210-mRNA-1:cds;Parent=Msa1028210-mRNA-1
Gene Sequence

>Msa1028210

ATGGCGGAGAAGGAAATGGGGCATCTCTATGCATTGGACTTTGATGGAGTTCTCTGTGATACATGTGGAGAGACAGCTATCTCAGCTCTCAAGGCAGCTAAGTTGAGATGGCCAGACTTGTTTGGCAGTGTGGATTCATCCACAGAAGATTGGATTGTTGAACAGATGATTAAAGTGCGACCGGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTGGAGACAATAGTTCCTTCCATCAGAAAGTCATCAGTGGCAGAGGGGCTTAAAGTTGAGGGTATATTGGAGGACTGGTTCAAATTGAAGCCCATTGTCATGGAAGAATGGAATGAGAACAGAGATGATCTGATAGACCTATTTGGAAAGGGTCGCTTTGCCGATGCTTTACTTAGAGAACTTGCTGGAATAACTATACCACCAGAGAGAATATATGGTCTAGGAACTGGTCCTAAGAAAGAGGGTTCTTTTTAA

Protein sequence

>Msa1028210

MAEKEMGHLYALDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVETGYETLLLVRLLLETIVPSIRKSSVAEGLKVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKGRFADALLRELAGITIPPERIYGLGTGPKKEGSF*