AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425110 MtrunA17_Chr1g0179681 98.312 237 3 1 1 236 21 257 1.16e-172 475
Msa1425110 MtrunA17_Chr3g0144211 39.888 178 79 4 69 222 52 225 7.85e-29 108
Msa1425110 MtrunA17_Chr5g0396231 37.903 124 64 4 104 223 386 500 3.31e-17 80.1
Msa1425110 MtrunA17_Chr4g0052911 40.000 125 54 5 110 221 122 238 2.50e-15 72.8
Msa1425110 MtrunA17_Chr4g0014351 35.484 124 66 5 104 222 754 868 7.35e-15 73.6
Msa1425110 MtrunA17_Chr8g0377771 39.474 114 58 5 111 221 37 142 2.93e-14 71.6
Msa1425110 MtrunA17_Chr1g0179231 37.607 117 64 4 100 210 65 178 1.15e-13 67.8
Msa1425110 MtrunA17_Chr8g0392891 25.238 210 124 6 42 226 54 255 2.69e-13 67.4
Msa1425110 MtrunA17_Chr8g0339141 41.053 95 46 4 129 221 58 144 3.01e-13 68.6
Msa1425110 MtrunA17_Chr7g0234801 37.895 95 49 4 129 221 52 138 1.45e-12 66.6
Msa1425110 MtrunA17_Chr8g0382711 35.075 134 66 5 102 222 81 206 1.74e-11 61.6
Msa1425110 MtrunA17_Chr4g0033841 37.815 119 58 5 108 219 109 218 6.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425110 AT3G10060.1 69.912 226 64 2 11 236 9 230 4.38e-108 311
Msa1425110 AT1G20810.1 32.864 213 110 5 42 226 22 229 2.27e-26 102
Msa1425110 AT5G05420.1 38.017 121 54 3 111 223 36 143 3.91e-17 75.9
Msa1425110 AT4G25340.1 35.172 145 80 5 84 223 342 477 2.22e-16 78.2
Msa1425110 AT3G12340.3 39.344 122 60 5 107 223 266 378 1.96e-15 75.1
Msa1425110 AT3G12340.2 39.344 122 60 5 107 223 266 378 1.96e-15 75.1
Msa1425110 AT3G12340.1 39.344 122 60 5 107 223 387 499 2.29e-15 75.1
Msa1425110 AT5G45680.1 38.235 136 63 5 99 221 79 206 3.48e-15 72.0
Msa1425110 AT5G48570.1 41.053 95 46 4 129 221 65 151 2.36e-14 72.4
Msa1425110 AT3G25230.1 38.462 117 61 5 107 220 34 142 1.03e-13 70.5
Msa1425110 AT3G25230.2 38.462 117 61 5 107 220 34 142 1.07e-13 70.5
Msa1425110 AT4G39710.1 36.842 133 65 4 102 222 85 210 5.03e-13 66.2
Msa1425110 AT4G39710.3 36.842 133 65 4 102 222 85 210 5.03e-13 66.2
Msa1425110 AT4G19830.1 32.743 113 67 4 104 210 78 187 5.06e-13 66.6
Msa1425110 AT1G18170.1 29.878 164 91 6 79 226 91 246 3.36e-12 64.7

Find 152 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCACTTTCAGGAATTT+TGG 0.132496 tig0025825:-12917 None:intergenic
TTCTTGACCCTCTGCTTTAA+TGG 0.192895 tig0025825:+17349 Msa1425110:three_prime_UTR
TCTGGTAGGGCTGCTCTTCT+AGG 0.222073 tig0025825:-15179 None:intergenic
GCGAGAGGAAATGTCTTAAA+AGG 0.252599 tig0025825:+13886 Msa1425110:CDS
CCCTCTGCTTTAATGGGTTC+GGG 0.271684 tig0025825:+17356 Msa1425110:three_prime_UTR
ACCCTCTGCTTTAATGGGTT+CGG 0.272032 tig0025825:+17355 Msa1425110:three_prime_UTR
TTCACCTCTATTGTTGCATT+TGG 0.284032 tig0025825:-14384 None:intergenic
GTTGAAATACTTTGGTTTCC+TGG 0.284593 tig0025825:+16094 Msa1425110:three_prime_UTR
AATAGCTCCCATAGCCTTCA+TGG 0.287973 tig0025825:+17034 Msa1425110:three_prime_UTR
CCGCTACCGCAGATAATTTC+TGG 0.295757 tig0025825:-15676 None:intergenic
TTGCATTTGGAGGAATTTCT+TGG 0.301411 tig0025825:-14371 None:intergenic
TTTACAAGAAAAGTTCAAAT+AGG 0.306108 tig0025825:+12179 Msa1425110:CDS
TCTTGACCCTCTGCTTTAAT+GGG 0.310995 tig0025825:+17350 Msa1425110:three_prime_UTR
GGAAGAACTATTGTTACTTC+TGG 0.314777 tig0025825:-15544 None:intergenic
AGATTCACTATGTTGCTAAA+TGG 0.324207 tig0025825:+13559 Msa1425110:intron
GTAGCTTTCATCAAGCTTGC+AGG 0.327310 tig0025825:+15625 Msa1425110:three_prime_UTR
TGTGTCTTGTCTACAAGGTC+TGG 0.329849 tig0025825:+15966 Msa1425110:three_prime_UTR
TTAGCCTTCAACAATCTTTA+CGG 0.335766 tig0025825:-15105 None:intergenic
CTGGCACTCTGCTCACTTTG+TGG 0.344207 tig0025825:-15657 None:intergenic
AGGAAATGTCTTAAAAGGTT+TGG 0.350382 tig0025825:+13891 Msa1425110:CDS
GAAGTTACTTGTGAAGAGAT+TGG 0.350766 tig0025825:-12050 None:intergenic
GCCATCAAACAAAGTCCATT+TGG 0.355516 tig0025825:+14995 Msa1425110:CDS
CCCAAATGGACTTTGTTTGA+TGG 0.357206 tig0025825:-14996 None:intergenic
TCATCACCATGAAACAGTTC+TGG 0.358787 tig0025825:+17293 Msa1425110:three_prime_UTR
TTATACCCTTGTACAACCTT+TGG 0.359525 tig0025825:+16005 Msa1425110:three_prime_UTR
AGAGCAGCAGAGACGAATTC+AGG 0.361317 tig0025825:-17108 Msa1425120:CDS
TGTATTCAATATTTCAATAC+AGG 0.366037 tig0025825:+15297 Msa1425110:three_prime_UTR
TATTTCAACCGTGTTCATAC+TGG 0.366794 tig0025825:-16080 Msa1425120:CDS
CTCTGGTGCAGAAGTAAATC+TGG 0.379600 tig0025825:-16988 Msa1425120:CDS
CTGCTTCCGTAGGCAAGTTC+AGG 0.381510 tig0025825:-14342 None:intergenic
GAAGAAGGAGATGTAATGTT+TGG 0.391656 tig0025825:-17011 Msa1425120:CDS
CTGAACTTGCCTACGGAAGC+AGG 0.393211 tig0025825:+14343 Msa1425110:CDS
TCCATGTCTTTACAAATTGA+AGG 0.394512 tig0025825:+12259 Msa1425110:CDS
ACCTCTATTGTTGCATTTGG+AGG 0.402774 tig0025825:-14381 None:intergenic
ATTTGTAAAGACATGGAGAT+TGG 0.404228 tig0025825:-12253 None:intergenic
TCCGCATTGTAAACAAAGAA+TGG 0.405433 tig0025825:-15776 Msa1425120:CDS
GAGCTTGTGTCTTGTCTACA+AGG 0.410873 tig0025825:+15961 Msa1425110:three_prime_UTR
CCATCAAACAAAGTCCATTT+GGG 0.414715 tig0025825:+14996 Msa1425110:CDS
TTATTTGTCAGTCTAGAAAC+AGG 0.415964 tig0025825:-15244 None:intergenic
TACCCTTGTACAACCTTTGG+AGG 0.431571 tig0025825:+16008 Msa1425110:three_prime_UTR
GAAACCATTACTTACCCAAA+TGG 0.439957 tig0025825:-15010 None:intergenic
ATGAAACAGTTCTGGTGAAA+AGG 0.440946 tig0025825:+17301 Msa1425110:three_prime_UTR
AAATGTTGGCGCAGGTCTAT+TGG 0.444124 tig0025825:-16136 Msa1425120:intron
AGTAGAGCTCTGTCCTCTTC+AGG 0.445180 tig0025825:+17251 Msa1425110:intron
GTCTTAAAAGGTTTGGATGT+AGG 0.449657 tig0025825:+13898 Msa1425110:CDS
AGACAAGGAATGGGTGTTGG+AGG 0.450682 tig0025825:+13606 Msa1425110:CDS
TGAAGAGGACAGAGCTCTAC+TGG 0.451227 tig0025825:-17249 Msa1425120:intron
TTGAAATACTTTGGTTTCCT+GGG 0.453521 tig0025825:+16095 Msa1425110:three_prime_UTR
TGAACACGGTTGAAATACTT+TGG 0.455750 tig0025825:+16086 Msa1425110:three_prime_UTR
GTTCAGGTACTATGATTTGA+AGG 0.462265 tig0025825:+13333 Msa1425110:intron
GTGTCTTGTCTACAAGGTCT+GGG 0.462415 tig0025825:+15967 Msa1425110:three_prime_UTR
CCGCATTGTAAACAAAGAAT+GGG 0.467266 tig0025825:-15775 Msa1425120:CDS
TGGGAATATTCTCACAAGAA+AGG 0.469421 tig0025825:-15756 Msa1425120:CDS
CATGACTAGTAGACAAGGAA+TGG 0.471106 tig0025825:+13596 Msa1425110:CDS
TATACTTACTTGAGACCATT+GGG 0.478333 tig0025825:-12949 None:intergenic
GGAGTAGAGGGCATGCGAGT+TGG 0.478765 tig0025825:+13919 Msa1425110:CDS
ATATACTTACTTGAGACCAT+TGG 0.481885 tig0025825:-12950 None:intergenic
GTAGAGGGCATGCGAGTTGG+AGG 0.484472 tig0025825:+13922 Msa1425110:CDS
ATTGGTGGCATGACAAATAC+AGG 0.484625 tig0025825:-16118 Msa1425120:CDS
TCCTCCAAATGCAACAATAG+AGG 0.487414 tig0025825:+14380 Msa1425110:CDS
AGGTACTATGATTTGAAGGT+TGG 0.487515 tig0025825:+13337 Msa1425110:intron
AAATTATCTTCAGATGGAGC+AGG 0.490796 tig0025825:+17068 Msa1425110:three_prime_UTR
CTGGTAGGGCTGCTCTTCTA+GGG 0.498958 tig0025825:-15178 None:intergenic
ATCTCAAAATTATCTTCAGA+TGG 0.502531 tig0025825:+17062 Msa1425110:three_prime_UTR
CCTTGTACAACCTTTGGAGG+TGG 0.503514 tig0025825:+16011 Msa1425110:three_prime_UTR
CCACCTCCAAAGGTTGTACA+AGG 0.506231 tig0025825:-16011 Msa1425120:CDS
TCCTTCTCAATAGTGTAAGT+TGG 0.508185 tig0025825:+15939 Msa1425110:three_prime_UTR
GGTTTGGATGTAGGAGTAGA+GGG 0.508312 tig0025825:+13907 Msa1425110:CDS
GATGAAAGCCATGAAGGCTA+TGG 0.508933 tig0025825:-17042 Msa1425120:CDS
GGGCATGCGAGTTGGAGGCC+AGG 0.512087 tig0025825:+13927 Msa1425110:CDS
CAGCCCTACGGATTTGATGT+AGG 0.512577 tig0025825:+13856 Msa1425110:intron
TGGATGTGAGAGTGCAATGA+AGG 0.512937 tig0025825:-12030 None:intergenic
GGTGAAGTAGAAGATGAGGC+TGG 0.513288 tig0025825:-17326 Msa1425120:CDS
CAAAGAACAGAACAATATCA+TGG 0.514026 tig0025825:+11970 Msa1425110:exon
CCAGAAATTATCTGCGGTAG+CGG 0.525395 tig0025825:+15676 Msa1425110:three_prime_UTR
GGCATGACAAATACAGGCCC+AGG 0.525776 tig0025825:-16112 Msa1425120:CDS
TCCTTCAATTTGTAAAGACA+TGG 0.531049 tig0025825:-12260 None:intergenic
GATTTCAAAACTTTGCCCAA+TGG 0.533176 tig0025825:+12934 Msa1425110:CDS
TGTTCTACACATGTTCATGA+TGG 0.533182 tig0025825:+15452 Msa1425110:three_prime_UTR
CAAGGAATGGGTGTTGGAGG+AGG 0.537182 tig0025825:+13609 Msa1425110:CDS
CACTATGTTGCTAAATGGAG+GGG 0.538954 tig0025825:+13564 Msa1425110:CDS
CTTAAATGATTGCAGCCCTA+CGG 0.540595 tig0025825:+13844 Msa1425110:intron
TGACATGAAATTCAAGTTGG+AGG 0.541260 tig0025825:-15495 None:intergenic
AGAAGTAAATCTGGATTCAC+AGG 0.541558 tig0025825:-16979 Msa1425120:intron
TTGGACTCCCCTGCTTCCGT+AGG 0.542189 tig0025825:-14352 None:intergenic
GCTACAAGACTACCACTTTG+CGG 0.544029 tig0025825:-15607 None:intergenic
ATTGTTGAAGGCTAATGCAA+TGG 0.545273 tig0025825:+15113 Msa1425110:exon
CTTCGTATGGTGGCCCTGCA+TGG 0.548737 tig0025825:+15883 Msa1425110:three_prime_UTR
ACTGCCGTAAAGATTGTTGA+AGG 0.549452 tig0025825:+15101 Msa1425110:CDS
AGGTTTGGATGTAGGAGTAG+AGG 0.549659 tig0025825:+13906 Msa1425110:CDS
GGAGTGAAGGATGGTGATGA+TGG 0.550644 tig0025825:-12009 None:intergenic
TTCACTATGTTGCTAAATGG+AGG 0.551720 tig0025825:+13562 Msa1425110:CDS
ATGACTAGTAGACAAGGAAT+GGG 0.556838 tig0025825:+13597 Msa1425110:CDS
TGTCTTTACAAATTGAAGGA+AGG 0.562751 tig0025825:+12263 Msa1425110:CDS
TGAACTTGCCTACGGAAGCA+GGG 0.563684 tig0025825:+14344 Msa1425110:CDS
TGCAATGAAGGAGTGAAGGA+TGG 0.565510 tig0025825:-12018 None:intergenic
TCCTTGTCTACTAGTCATGA+AGG 0.569260 tig0025825:-13592 None:intergenic
GCTATGGGAGCTATTGAAGA+AGG 0.572049 tig0025825:-17026 Msa1425120:CDS
GAACTAAGAGCCATCTGGTA+GGG 0.572462 tig0025825:-15192 None:intergenic
AGTAGACAAGGAATGGGTGT+TGG 0.572841 tig0025825:+13603 Msa1425110:CDS
TCACTATGTTGCTAAATGGA+GGG 0.574035 tig0025825:+13563 Msa1425110:CDS
GTTCCTCCTGAACTTGCCTA+CGG 0.574975 tig0025825:+14336 Msa1425110:CDS
GAGAGAGAGAATATAGAGTG+AGG 0.576069 tig0025825:-11874 None:intergenic
ATGAAAGCCATGAAGGCTAT+GGG 0.576335 tig0025825:-17041 Msa1425120:CDS
ATATGACATGAAATTCAAGT+TGG 0.577879 tig0025825:-15498 None:intergenic
ATTAAAGCAGAGGGTCAAGA+AGG 0.580470 tig0025825:-17347 Msa1425120:CDS
AGACTTACAATGTCTTCGTA+TGG 0.580822 tig0025825:+15870 Msa1425110:intron
ATTGAGAAGGATGGCAGCAA+TGG 0.582219 tig0025825:-15927 Msa1425120:CDS
GAAATTATCTGCGGTAGCGG+TGG 0.585724 tig0025825:+15679 Msa1425110:three_prime_UTR
AGAGTGCAATGAAGGAGTGA+AGG 0.585916 tig0025825:-12022 None:intergenic
AGAAGGTGAAGTAGAAGATG+AGG 0.586312 tig0025825:-17330 Msa1425120:CDS
TATGATTTGAAGGTTGGCGA+TGG 0.588743 tig0025825:+13343 Msa1425110:CDS
CCCGAACCCATTAAAGCAGA+GGG 0.588808 tig0025825:-17356 Msa1425120:CDS
CCCATTCTTTGTTTACAATG+CGG 0.589870 tig0025825:+15775 Msa1425110:three_prime_UTR
GGAGATGTAATGTTTGGCTC+TGG 0.590473 tig0025825:-17005 Msa1425120:CDS
AGAGTGAACTAAGAGCCATC+TGG 0.593609 tig0025825:-15197 None:intergenic
TCCCGAACCCATTAAAGCAG+AGG 0.593821 tig0025825:-17357 Msa1425120:CDS
TGCATCATAAGATTCCATGC+AGG 0.594356 tig0025825:-15897 Msa1425120:CDS
AATGGGTGTTGGAGGAGGAA+CGG 0.601229 tig0025825:+13614 Msa1425110:CDS
GCATCATAAGATTCCATGCA+GGG 0.604220 tig0025825:-15896 Msa1425120:CDS
TAACTAACTAACATGTTGTG+AGG 0.604740 tig0025825:-12306 None:intergenic
TGTTGGCGCAGGTCTATTGG+TGG 0.605871 tig0025825:-16133 Msa1425120:intron
CTTACAATGTCTTCGTATGG+TGG 0.608002 tig0025825:+15873 Msa1425110:intron
ACTTACACTATTGAGAAGGA+TGG 0.610559 tig0025825:-15936 Msa1425120:CDS
GTTTCATGGTGATGAAAATG+AGG 0.610771 tig0025825:-17285 Msa1425120:CDS
ATACAGGAGATGCCTTTGCA+AGG 0.611120 tig0025825:+15313 Msa1425110:three_prime_UTR
AGAAGAGCAGCCCTACCAGA+TGG 0.611921 tig0025825:+15182 Msa1425110:three_prime_UTR
TTCGCCTACATCAAATCCGT+AGG 0.612715 tig0025825:-13860 None:intergenic
TCATGACAATCCACCTCCAA+AGG 0.613499 tig0025825:-16021 Msa1425120:CDS
GAGACGAATTCAGGAAGCAA+TGG 0.614187 tig0025825:-17099 Msa1425120:CDS
GTGAAGTAGAAGATGAGGCT+GGG 0.617278 tig0025825:-17325 Msa1425120:CDS
TCCAACTTACACTATTGAGA+AGG 0.618655 tig0025825:-15940 Msa1425120:CDS
CTTCCGTAGGCAAGTTCAGG+AGG 0.618678 tig0025825:-14339 None:intergenic
TGAACTAAGAGCCATCTGGT+AGG 0.620922 tig0025825:-15193 None:intergenic
ATTCAAGTTGGAGGAATCAG+TGG 0.635146 tig0025825:-15486 None:intergenic
GAACTTGCCTACGGAAGCAG+GGG 0.635852 tig0025825:+14345 Msa1425110:CDS
CTAGCAGCACCTCCGCAAAG+TGG 0.637732 tig0025825:+15595 Msa1425110:three_prime_UTR
TCGCCTACATCAAATCCGTA+GGG 0.638693 tig0025825:-13859 None:intergenic
TGGAGTCTATGCATGTGATG+TGG 0.644219 tig0025825:+12432 Msa1425110:CDS
GATGGAGCTGAAGCTGTGAA+AGG 0.645046 tig0025825:+13361 Msa1425110:CDS
ACCTTCATGACTAGTAGACA+AGG 0.648553 tig0025825:+13591 Msa1425110:CDS
GGAAGCTATTGATCCTGAAG+AGG 0.658125 tig0025825:-17264 Msa1425120:CDS
TTTAAGTGCACATTTGAACG+TGG 0.660103 tig0025825:-15732 Msa1425120:CDS
CAAGTTGGAGGAATCAGTGG+TGG 0.660922 tig0025825:-15483 None:intergenic
GTAGGGCTGCTCTTCTAGGG+CGG 0.669196 tig0025825:-15175 None:intergenic
GTGTTCATACTGGATATGAG+TGG 0.672306 tig0025825:-16070 Msa1425120:CDS
GATGTAGGCGAATCTGCGAG+AGG 0.684048 tig0025825:+13871 Msa1425110:CDS
GAAGAATGTGAACAGCTGCA+TGG 0.699412 tig0025825:-12208 None:intergenic
CACCTCCAAAGGTTGTACAA+GGG 0.704703 tig0025825:-16010 Msa1425120:CDS
ACAAGACTACCACTTTGCGG+AGG 0.711544 tig0025825:-15604 None:intergenic
ACTCATATCCAGTATGAACA+CGG 0.712518 tig0025825:+16072 Msa1425110:three_prime_UTR
AGAGTGCCAGAAATTATCTG+CGG 0.744813 tig0025825:+15670 Msa1425110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTTTCTTTAGTT+TGG - tig0025825:11912-11931 None:intergenic 10.0%
!! ATTATATCTATTAATCAAAT+CGG - tig0025825:12626-12645 None:intergenic 10.0%
!! ATTTGATTAATAGATATAAT+AGG + tig0025825:12626-12645 Msa1425110:intron 10.0%
!! ATTAATATATTCAATTTATG+TGG - tig0025825:14486-14505 None:intergenic 10.0%
!!! TTTAATTGTTTATATTTTTG+TGG - tig0025825:15363-15382 None:intergenic 10.0%
!! TTAAGAAAAAAAAATTAGTT+AGG - tig0025825:16375-16394 Msa1425120:intron 10.0%
!! TAATGTTAATTATTATTAGA+TGG - tig0025825:16879-16898 Msa1425120:intron 10.0%
!!! ATGTTATTTGAATATCAATT+TGG + tig0025825:12536-12555 Msa1425110:intron 15.0%
!!! TGTTATTTGAATATCAATTT+GGG + tig0025825:12537-12556 Msa1425110:intron 15.0%
!!! AAGTTTAACAACATTTTAAA+TGG - tig0025825:12794-12813 None:intergenic 15.0%
!!! AATTATGTTTTTCTTGTATT+TGG + tig0025825:12874-12893 Msa1425110:intron 15.0%
!!! ATAGTTTCTTTTAAGATATT+TGG - tig0025825:15568-15587 None:intergenic 15.0%
!! AATACATGAAATAAGTAATT+TGG + tig0025825:15809-15828 Msa1425110:intron 15.0%
!!! TCATGTATATTGTTATTTTA+GGG - tig0025825:16216-16235 Msa1425120:intron 15.0%
!! TTTACAAGAAAAGTTCAAAT+AGG + tig0025825:12179-12198 Msa1425110:CDS 20.0%
!! GTTAGAATTATAAGATTCTT+AGG + tig0025825:12373-12392 Msa1425110:intron 20.0%
!! TTATTAACCACAAATTTGAA+TGG - tig0025825:12690-12709 None:intergenic 20.0%
!! AATTTGTGGTTAATAAAGTT+TGG + tig0025825:12694-12713 Msa1425110:intron 20.0%
!!! GTATCATCATATCTATTTTA+AGG - tig0025825:13099-13118 None:intergenic 20.0%
!! TAAAATAGATATGATGATAC+AGG + tig0025825:13099-13118 Msa1425110:intron 20.0%
!! CTTAAAATAAATGTACTTCT+AGG - tig0025825:13135-13154 None:intergenic 20.0%
!! TAAGATATATAAAGCTAGTT+AGG + tig0025825:13283-13302 Msa1425110:intron 20.0%
!! AAGATATATAAAGCTAGTTA+GGG + tig0025825:13284-13303 Msa1425110:intron 20.0%
!! AACTCATAACAATCAATTAA+AGG - tig0025825:13674-13693 None:intergenic 20.0%
!!! TTTATGCAAAATTTTCTTGT+TGG + tig0025825:13804-13823 Msa1425110:intron 20.0%
!!! TTATGCAAAATTTTCTTGTT+GGG + tig0025825:13805-13824 Msa1425110:intron 20.0%
!! AAATCATGAATATCAGTAAA+TGG + tig0025825:14005-14024 Msa1425110:intron 20.0%
!!! TGTAAATTTTGCATCTTTAA+AGG - tig0025825:14179-14198 None:intergenic 20.0%
!! TTAAAGATGCAAAATTTACA+AGG + tig0025825:14179-14198 Msa1425110:intron 20.0%
!! TATATGTAGTATCAAATTAC+AGG - tig0025825:14417-14436 None:intergenic 20.0%
!!! AGAATGATTATTTCTTTTGA+TGG - tig0025825:14730-14749 None:intergenic 20.0%
!! ATCCATAATCAATAAATGTA+GGG - tig0025825:14867-14886 None:intergenic 20.0%
!!! GTAGTTAATTTCAATGATTT+TGG + tig0025825:15068-15087 Msa1425110:intron 20.0%
!! TGTATTCAATATTTCAATAC+AGG + tig0025825:15297-15316 Msa1425110:three_prime_UTR 20.0%
!!! CTCATGTATATTGTTATTTT+AGG - tig0025825:16217-16236 Msa1425120:intron 20.0%
!!! AAAACTTTCAGATTTTAAGT+CGG + tig0025825:16297-16316 Msa1425110:intron 20.0%
!!! ATTTTGGAGTACTATTATAA+AGG - tig0025825:16336-16355 Msa1425120:intron 20.0%
!! TAACATTAAAACTAGAATCA+TGG + tig0025825:16891-16910 Msa1425110:intron 20.0%
!! CTTCGACAACATTTTAAATA+TGG + tig0025825:12568-12587 Msa1425110:intron 25.0%
! TGAAATACCATTCAAATTTG+TGG + tig0025825:12680-12699 Msa1425110:intron 25.0%
!!! AAAGTTTTGAAATCACTTTC+AGG - tig0025825:12928-12947 None:intergenic 25.0%
! ACTAATGAAACTAAAGTCAT+AGG - tig0025825:13186-13205 None:intergenic 25.0%
! AACATAGTGAATCTACAATA+TGG - tig0025825:13553-13572 None:intergenic 25.0%
! ATTGATTGTTATGAGTTAAC+AGG + tig0025825:13677-13696 Msa1425110:intron 25.0%
!! TATGCAAAATTTTCTTGTTG+GGG + tig0025825:13806-13825 Msa1425110:intron 25.0%
! ATGAAATTTGTAACAGAACA+AGG - tig0025825:13983-14002 None:intergenic 25.0%
! AATGAACAACTACATTGAAT+TGG + tig0025825:14047-14066 Msa1425110:intron 25.0%
! ATAGTATGATTCTTGTGATA+TGG - tig0025825:14451-14470 None:intergenic 25.0%
!! TCTTTTTAGATATCTAGAGA+CGG - tig0025825:14696-14715 None:intergenic 25.0%
!!! AAAATTAGTTCTTTTTCTGC+CGG + tig0025825:14800-14819 Msa1425110:intron 25.0%
! TCCATAATCAATAAATGTAG+GGG - tig0025825:14866-14885 None:intergenic 25.0%
! GATCCATAATCAATAAATGT+AGG - tig0025825:14868-14887 None:intergenic 25.0%
! AGTATATAAGATGCAGAATT+AGG - tig0025825:14893-14912 None:intergenic 25.0%
!! ATTTTCACCTTTGTAACTTT+CGG + tig0025825:14947-14966 Msa1425110:intron 25.0%
! ATATGACATGAAATTCAAGT+TGG - tig0025825:15501-15520 None:intergenic 25.0%
! ACTTATTTCATGTATTTGAC+AGG - tig0025825:15805-15824 Msa1425120:intron 25.0%
! CTTATGTAAGTGATAAATGT+TGG - tig0025825:16153-16172 Msa1425120:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + tig0025825:16724-16743 Msa1425110:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - tig0025825:16764-16783 Msa1425120:intron 25.0%
!! ATTTTCACACTTGGTAAAAT+GGG - tig0025825:16936-16955 Msa1425120:intron 25.0%
!! ATTTGTATGATTTTCACACT+TGG - tig0025825:16945-16964 Msa1425120:intron 25.0%
! ATCTCAAAATTATCTTCAGA+TGG + tig0025825:17062-17081 Msa1425110:three_prime_UTR 25.0%
! TGAGTTTGTGTTAAGTATAT+GGG - tig0025825:17189-17208 Msa1425120:intron 25.0%
CAAAGAACAGAACAATATCA+TGG + tig0025825:11970-11989 Msa1425110:exon 30.0%
ATTTGTAAAGACATGGAGAT+TGG - tig0025825:12256-12275 None:intergenic 30.0%
TCCATGTCTTTACAAATTGA+AGG + tig0025825:12259-12278 Msa1425110:CDS 30.0%
TCCTTCAATTTGTAAAGACA+TGG - tig0025825:12263-12282 None:intergenic 30.0%
TGTCTTTACAAATTGAAGGA+AGG + tig0025825:12263-12282 Msa1425110:CDS 30.0%
TAACTAACTAACATGTTGTG+AGG - tig0025825:12309-12328 None:intergenic 30.0%
! TATTTTATGTGATCAGTTGC+TGG + tig0025825:12412-12431 Msa1425110:intron 30.0%
GGTTAATAAAGTTTGGTTGA+CGG + tig0025825:12701-12720 Msa1425110:intron 30.0%
GTTAATAAAGTTTGGTTGAC+GGG + tig0025825:12702-12721 Msa1425110:intron 30.0%
TTAATAAAGTTTGGTTGACG+GGG + tig0025825:12703-12722 Msa1425110:intron 30.0%
CTTAACGAGTATATCATGAT+TGG - tig0025825:12739-12758 None:intergenic 30.0%
! GAAATCACTTTCAGGAATTT+TGG - tig0025825:12920-12939 None:intergenic 30.0%
TATACTTACTTGAGACCATT+GGG - tig0025825:12952-12971 None:intergenic 30.0%
ATATACTTACTTGAGACCAT+TGG - tig0025825:12953-12972 None:intergenic 30.0%
!! TAGTACACTAGTCTTTAGTT+AGG + tig0025825:13202-13221 Msa1425110:intron 30.0%
!! AGTACACTAGTCTTTAGTTA+GGG + tig0025825:13203-13222 Msa1425110:intron 30.0%
TGTAATCTTGAAACTTTCAC+CGG + tig0025825:13237-13256 Msa1425110:intron 30.0%
ATGAAATCAACTAGAAAAGC+CGG - tig0025825:13259-13278 None:intergenic 30.0%
AAATATGTTTCGCTCATTAG+TGG + tig0025825:13416-13435 Msa1425110:intron 30.0%
AGATTCACTATGTTGCTAAA+TGG + tig0025825:13559-13578 Msa1425110:intron 30.0%
CACAATGTATAAATCTTCTG+AGG + tig0025825:13774-13793 Msa1425110:intron 30.0%
AGGAAATGTCTTAAAAGGTT+TGG + tig0025825:13891-13910 Msa1425110:CDS 30.0%
TGCAAAATTTACAAGGAAGT+TGG + tig0025825:14186-14205 Msa1425110:intron 30.0%
GCAAAATTTACAAGGAAGTT+GGG + tig0025825:14187-14206 Msa1425110:intron 30.0%
TTGATCAATTAGAGTTGTTG+TGG - tig0025825:14546-14565 None:intergenic 30.0%
CTCTAATTGATCAAATTCCT+TGG + tig0025825:14552-14571 Msa1425110:intron 30.0%
! TCCCCTACATTTATTGATTA+TGG + tig0025825:14862-14881 Msa1425110:intron 30.0%
! TTAGCCTTCAACAATCTTTA+CGG - tig0025825:15108-15127 None:intergenic 30.0%
TTATTTGTCAGTCTAGAAAC+AGG - tig0025825:15247-15266 None:intergenic 30.0%
TTGCTTGGAAAAAATTGACT+TGG - tig0025825:15415-15434 None:intergenic 30.0%
TGTAAGTCTATTGTTCATGA+TGG - tig0025825:15859-15878 Msa1425120:intron 30.0%
! TTGAAATACTTTGGTTTCCT+GGG + tig0025825:16095-16114 Msa1425110:three_prime_UTR 30.0%
AGTACTATTATAAAGGAGGT+GGG - tig0025825:16329-16348 Msa1425120:intron 30.0%
! TTGGAGTACTATTATAAAGG+AGG - tig0025825:16333-16352 Msa1425120:intron 30.0%
! AGTACAAAGTTCAGAGATTT+TGG - tig0025825:16352-16371 Msa1425120:intron 30.0%
! TATTTTCCATGTAGTATGAC+TGG + tig0025825:16400-16419 Msa1425110:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - tig0025825:16578-16597 Msa1425120:intron 30.0%
TGGTAGAAAATAAGCTTAGA+TGG + tig0025825:16591-16610 Msa1425110:intron 30.0%
GAAAATAAGCTTAGATGGTT+TGG + tig0025825:16596-16615 Msa1425110:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - tig0025825:16648-16667 Msa1425120:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + tig0025825:16649-16668 Msa1425110:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - tig0025825:16717-16736 Msa1425120:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - tig0025825:16729-16748 Msa1425120:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + tig0025825:16768-16787 Msa1425110:intron 30.0%
! GATTTTCACACTTGGTAAAA+TGG - tig0025825:16937-16956 Msa1425120:intron 30.0%
GTGAGTTTGTGTTAAGTATA+TGG - tig0025825:17190-17209 Msa1425120:intron 30.0%
GAAGTTACTTGTGAAGAGAT+TGG - tig0025825:12053-12072 None:intergenic 35.0%
CTGAATTGTCTTAACAACAC+AGG + tig0025825:12142-12161 Msa1425110:intron 35.0%
!! TGGTTCTACAACAGTTTTAC+TGG - tig0025825:12236-12255 None:intergenic 35.0%
GATTTCAAAACTTTGCCCAA+TGG + tig0025825:12934-12953 Msa1425110:CDS 35.0%
! GAATTTTCTACCCTCTACTT+TGG + tig0025825:13010-13029 Msa1425110:intron 35.0%
GACAAAACTCTGATATGTTC+AGG + tig0025825:13317-13336 Msa1425110:intron 35.0%
GTTCAGGTACTATGATTTGA+AGG + tig0025825:13333-13352 Msa1425110:intron 35.0%
AGGTACTATGATTTGAAGGT+TGG + tig0025825:13337-13356 Msa1425110:intron 35.0%
TTCACTATGTTGCTAAATGG+AGG + tig0025825:13562-13581 Msa1425110:CDS 35.0%
TCACTATGTTGCTAAATGGA+GGG + tig0025825:13563-13582 Msa1425110:CDS 35.0%
ATGACTAGTAGACAAGGAAT+GGG + tig0025825:13597-13616 Msa1425110:CDS 35.0%
!! TAGATTTTAGCCGAGTTACT+TGG - tig0025825:13646-13665 None:intergenic 35.0%
GGTTCTTCCATGTATAAACA+AGG + tig0025825:13698-13717 Msa1425110:intron 35.0%
!! GAACATGCCTTGTTTATACA+TGG - tig0025825:13708-13727 None:intergenic 35.0%
GTCTTAAAAGGTTTGGATGT+AGG + tig0025825:13898-13917 Msa1425110:CDS 35.0%
AGTCCCTAGACAGTTAAATT+TGG + tig0025825:14152-14171 Msa1425110:intron 35.0%
GGTCCAAATTTAACTGTCTA+GGG - tig0025825:14158-14177 None:intergenic 35.0%
AGGTCCAAATTTAACTGTCT+AGG - tig0025825:14159-14178 None:intergenic 35.0%
AAATTTACAAGGAAGTTGGG+AGG + tig0025825:14190-14209 Msa1425110:intron 35.0%
AATTTACAAGGAAGTTGGGA+GGG + tig0025825:14191-14210 Msa1425110:intron 35.0%
! ATTTAGTTGACTTTCTGCAG+CGG + tig0025825:14304-14323 Msa1425110:intron 35.0%
TTGCATTTGGAGGAATTTCT+TGG - tig0025825:14374-14393 None:intergenic 35.0%
TTCACCTCTATTGTTGCATT+TGG - tig0025825:14387-14406 None:intergenic 35.0%
CTTGTGATATGGAGCTAAAA+TGG - tig0025825:14440-14459 None:intergenic 35.0%
! TAGAGTTGTTGTGGTGTTAA+TGG - tig0025825:14537-14556 None:intergenic 35.0%
TGGAAATGGTAATTAAGCCA+AGG - tig0025825:14572-14591 None:intergenic 35.0%
TGCTAACTCAGAAATGGAAA+TGG - tig0025825:14586-14605 None:intergenic 35.0%
TTTCCATTTCTGAGTTAGCA+AGG + tig0025825:14586-14605 Msa1425110:intron 35.0%
CAGTTAAACTGATTGAACCT+TGG - tig0025825:14633-14652 None:intergenic 35.0%
GGTTCAATCAGTTTAACTGA+AGG + tig0025825:14634-14653 Msa1425110:intron 35.0%
TTAGATATCTAGAGACGGAA+GGG - tig0025825:14691-14710 None:intergenic 35.0%
TTTAGATATCTAGAGACGGA+AGG - tig0025825:14692-14711 None:intergenic 35.0%
CCATCAAACAAAGTCCATTT+GGG + tig0025825:14996-15015 Msa1425110:CDS 35.0%
AAGTCCATTTGGGTAAGTAA+TGG + tig0025825:15006-15025 Msa1425110:intron 35.0%
GAAACCATTACTTACCCAAA+TGG - tig0025825:15013-15032 None:intergenic 35.0%
! TCAATGATTTTGGATTCTGC+AGG + tig0025825:15078-15097 Msa1425110:intron 35.0%
ATTGTTGAAGGCTAATGCAA+TGG + tig0025825:15113-15132 Msa1425110:exon 35.0%
!! AACTTTTTGACTCCTTGCAA+AGG - tig0025825:15328-15347 None:intergenic 35.0%
GAGTCAAAAAGTTCATGAGA+CGG + tig0025825:15335-15354 Msa1425110:three_prime_UTR 35.0%
TGTTCTACACATGTTCATGA+TGG + tig0025825:15452-15471 Msa1425110:three_prime_UTR 35.0%
!! TGACATGAAATTCAAGTTGG+AGG - tig0025825:15498-15517 None:intergenic 35.0%
! GGAAGAACTATTGTTACTTC+TGG - tig0025825:15547-15566 None:intergenic 35.0%
TTTAAGTGCACATTTGAACG+TGG - tig0025825:15735-15754 Msa1425120:CDS 35.0%
TGGGAATATTCTCACAAGAA+AGG - tig0025825:15759-15778 Msa1425120:CDS 35.0%
CCGCATTGTAAACAAAGAAT+GGG - tig0025825:15778-15797 Msa1425120:CDS 35.0%
! CCCATTCTTTGTTTACAATG+CGG + tig0025825:15775-15794 Msa1425110:three_prime_UTR 35.0%
TCCGCATTGTAAACAAAGAA+TGG - tig0025825:15779-15798 Msa1425120:CDS 35.0%
AGACTTACAATGTCTTCGTA+TGG + tig0025825:15870-15889 Msa1425110:intron 35.0%
ACTTACACTATTGAGAAGGA+TGG - tig0025825:15939-15958 Msa1425120:CDS 35.0%
TCCTTCTCAATAGTGTAAGT+TGG + tig0025825:15939-15958 Msa1425110:three_prime_UTR 35.0%
TCCAACTTACACTATTGAGA+AGG - tig0025825:15943-15962 Msa1425120:CDS 35.0%
TTATACCCTTGTACAACCTT+TGG + tig0025825:16005-16024 Msa1425110:three_prime_UTR 35.0%
ACTCATATCCAGTATGAACA+CGG + tig0025825:16072-16091 Msa1425110:three_prime_UTR 35.0%
TATTTCAACCGTGTTCATAC+TGG - tig0025825:16083-16102 Msa1425120:CDS 35.0%
TGAACACGGTTGAAATACTT+TGG + tig0025825:16086-16105 Msa1425110:three_prime_UTR 35.0%
! GTTGAAATACTTTGGTTTCC+TGG + tig0025825:16094-16113 Msa1425110:three_prime_UTR 35.0%
TACTATTATAAAGGAGGTGG+GGG - tig0025825:16327-16346 Msa1425120:intron 35.0%
GTACTATTATAAAGGAGGTG+GGG - tig0025825:16328-16347 Msa1425120:intron 35.0%
GAGTACTATTATAAAGGAGG+TGG - tig0025825:16330-16349 Msa1425120:intron 35.0%
ACTGGCAATGTTGTATGATA+CGG + tig0025825:16418-16437 Msa1425110:intron 35.0%
AGACTAGACAAGATAGGATT+AGG + tig0025825:16519-16538 Msa1425110:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + tig0025825:16571-16590 Msa1425110:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + tig0025825:16652-16671 Msa1425110:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG - tig0025825:16707-16726 Msa1425120:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + tig0025825:16736-16755 Msa1425110:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + tig0025825:16748-16767 Msa1425110:intron 35.0%
AGAAGTAAATCTGGATTCAC+AGG - tig0025825:16982-17001 Msa1425120:CDS 35.0%
GAAGAAGGAGATGTAATGTT+TGG - tig0025825:17014-17033 Msa1425120:CDS 35.0%
!!! TTTTGAGATGAAAGCCATGA+AGG - tig0025825:17051-17070 Msa1425120:CDS 35.0%
AAATTATCTTCAGATGGAGC+AGG + tig0025825:17068-17087 Msa1425110:three_prime_UTR 35.0%
! GTTTCATGGTGATGAAAATG+AGG - tig0025825:17288-17307 Msa1425120:CDS 35.0%
! TTTTCACCAGAACTGTTTCA+TGG - tig0025825:17302-17321 Msa1425120:CDS 35.0%
! ATGAAACAGTTCTGGTGAAA+AGG + tig0025825:17301-17320 Msa1425110:three_prime_UTR 35.0%
GAGAGAGAGAATATAGAGTG+AGG - tig0025825:11877-11896 None:intergenic 40.0%
!!! TTTGGTTTTCTGCAGCTAAG+AGG + tig0025825:12892-12911 Msa1425110:intron 40.0%
GAGTCAGTTACCAAAGTAGA+GGG - tig0025825:13023-13042 None:intergenic 40.0%
TGAGTCAGTTACCAAAGTAG+AGG - tig0025825:13024-13043 None:intergenic 40.0%
TATGATTTGAAGGTTGGCGA+TGG + tig0025825:13343-13362 Msa1425110:CDS 40.0%
CAGACCTGACTCATATAACT+CGG + tig0025825:13456-13475 Msa1425110:intron 40.0%
AACTCCGAGTTATATGAGTC+AGG - tig0025825:13463-13482 None:intergenic 40.0%
CACTATGTTGCTAAATGGAG+GGG + tig0025825:13564-13583 Msa1425110:CDS 40.0%
ACCTTCATGACTAGTAGACA+AGG + tig0025825:13591-13610 Msa1425110:CDS 40.0%
TCCTTGTCTACTAGTCATGA+AGG - tig0025825:13595-13614 None:intergenic 40.0%
CATGACTAGTAGACAAGGAA+TGG + tig0025825:13596-13615 Msa1425110:CDS 40.0%
CTTAAATGATTGCAGCCCTA+CGG + tig0025825:13844-13863 Msa1425110:intron 40.0%
GCGAGAGGAAATGTCTTAAA+AGG + tig0025825:13886-13905 Msa1425110:CDS 40.0%
TCCTCCAAATGCAACAATAG+AGG + tig0025825:14380-14399 Msa1425110:CDS 40.0%
ACCTCTATTGTTGCATTTGG+AGG - tig0025825:14384-14403 None:intergenic 40.0%
TAGATATCTAGAGACGGAAG+GGG - tig0025825:14690-14709 None:intergenic 40.0%
TGAGTTCAGATGCACATAAC+CGG - tig0025825:14822-14841 None:intergenic 40.0%
ATGTGCATCTGAACTCATGT+TGG + tig0025825:14825-14844 Msa1425110:intron 40.0%
GCCATCAAACAAAGTCCATT+TGG + tig0025825:14995-15014 Msa1425110:CDS 40.0%
! CCCAAATGGACTTTGTTTGA+TGG - tig0025825:14999-15018 None:intergenic 40.0%
ACTGCCGTAAAGATTGTTGA+AGG + tig0025825:15101-15120 Msa1425110:CDS 40.0%
!!! TGTGAGTCACTGTTTTTGCT+TGG - tig0025825:15430-15449 None:intergenic 40.0%
!! ATTCAAGTTGGAGGAATCAG+TGG - tig0025825:15489-15508 None:intergenic 40.0%
! AGAGTGCCAGAAATTATCTG+CGG + tig0025825:15670-15689 Msa1425110:three_prime_UTR 40.0%
CTTACAATGTCTTCGTATGG+TGG + tig0025825:15873-15892 Msa1425110:intron 40.0%
GCATCATAAGATTCCATGCA+GGG - tig0025825:15899-15918 Msa1425120:CDS 40.0%
TGCATCATAAGATTCCATGC+AGG - tig0025825:15900-15919 Msa1425120:CDS 40.0%
GTGTTCATACTGGATATGAG+TGG - tig0025825:16073-16092 Msa1425120:CDS 40.0%
! ATTGGTGGCATGACAAATAC+AGG - tig0025825:16121-16140 Msa1425120:CDS 40.0%
TAAGTGATAAATGTTGGCGC+AGG - tig0025825:16147-16166 Msa1425120:intron 40.0%
ACATTGCCAGTCATACTACA+TGG - tig0025825:16409-16428 Msa1425120:intron 40.0%
TGTTGTATGATACGGAGTGT+TGG + tig0025825:16426-16445 Msa1425110:intron 40.0%
! GTTGTATGATACGGAGTGTT+GGG + tig0025825:16427-16446 Msa1425110:intron 40.0%
CACTTACTTTACTCTCGTGT+TGG - tig0025825:16463-16482 Msa1425120:intron 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG + tig0025825:16466-16485 Msa1425110:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + tig0025825:16513-16532 Msa1425110:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - tig0025825:16639-16658 Msa1425120:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + tig0025825:16677-16696 Msa1425110:intron 40.0%
ATGAAAGCCATGAAGGCTAT+GGG - tig0025825:17044-17063 Msa1425120:CDS 40.0%
TTCCTGTGAATGTACCATTG+TGG + tig0025825:17154-17173 Msa1425110:intron 40.0%
TCATCACCATGAAACAGTTC+TGG + tig0025825:17293-17312 Msa1425110:three_prime_UTR 40.0%
AGAAGGTGAAGTAGAAGATG+AGG - tig0025825:17333-17352 Msa1425120:CDS 40.0%
ATTAAAGCAGAGGGTCAAGA+AGG - tig0025825:17350-17369 Msa1425120:CDS 40.0%
TTCTTGACCCTCTGCTTTAA+TGG + tig0025825:17349-17368 Msa1425110:three_prime_UTR 40.0%
TCTTGACCCTCTGCTTTAAT+GGG + tig0025825:17350-17369 Msa1425110:three_prime_UTR 40.0%
TGCAATGAAGGAGTGAAGGA+TGG - tig0025825:12021-12040 None:intergenic 45.0%
AGAGTGCAATGAAGGAGTGA+AGG - tig0025825:12025-12044 None:intergenic 45.0%
! TGGATGTGAGAGTGCAATGA+AGG - tig0025825:12033-12052 None:intergenic 45.0%
GAAGAATGTGAACAGCTGCA+TGG - tig0025825:12211-12230 None:intergenic 45.0%
TGGAGTCTATGCATGTGATG+TGG + tig0025825:12432-12451 Msa1425110:CDS 45.0%
TGGTTAATGCAGTTCACGCA+TGG + tig0025825:12588-12607 Msa1425110:intron 45.0%
TTGACGCAGTTCAACACATG+TGG - tig0025825:12771-12790 None:intergenic 45.0%
AGTAGACAAGGAATGGGTGT+TGG + tig0025825:13603-13622 Msa1425110:CDS 45.0%
ACGGTACGATCCAAGTAACT+CGG + tig0025825:13633-13652 Msa1425110:intron 45.0%
TCGCCTACATCAAATCCGTA+GGG - tig0025825:13862-13881 None:intergenic 45.0%
TTCGCCTACATCAAATCCGT+AGG - tig0025825:13863-13882 None:intergenic 45.0%
AGGTTTGGATGTAGGAGTAG+AGG + tig0025825:13906-13925 Msa1425110:CDS 45.0%
GGTTTGGATGTAGGAGTAGA+GGG + tig0025825:13907-13926 Msa1425110:CDS 45.0%
! AGGAAGTTGGGAGGGATTTT+AGG + tig0025825:14199-14218 Msa1425110:intron 45.0%
TCGCCTTGCTAACTCAGAAA+TGG - tig0025825:14592-14611 None:intergenic 45.0%
CAAGGCGAATTTGTCTCCTT+TGG + tig0025825:14604-14623 Msa1425110:intron 45.0%
TTTGTCTCCTTTGGACACCA+AGG + tig0025825:14613-14632 Msa1425110:intron 45.0%
!! GATTGAACCTTGGTGTCCAA+AGG - tig0025825:14623-14642 None:intergenic 45.0%
GAACTCATGTTGGCAGGAAA+AGG + tig0025825:14835-14854 Msa1425110:intron 45.0%
CTGCAGTCCGAAAGTTACAA+AGG - tig0025825:14957-14976 None:intergenic 45.0%
TGTAACTTTCGGACTGCAGA+TGG + tig0025825:14958-14977 Msa1425110:intron 45.0%
GAACTAAGAGCCATCTGGTA+GGG - tig0025825:15195-15214 None:intergenic 45.0%
TGAACTAAGAGCCATCTGGT+AGG - tig0025825:15196-15215 None:intergenic 45.0%
AGAGTGAACTAAGAGCCATC+TGG - tig0025825:15200-15219 None:intergenic 45.0%
ATACAGGAGATGCCTTTGCA+AGG + tig0025825:15313-15332 Msa1425110:three_prime_UTR 45.0%
GCTACAAGACTACCACTTTG+CGG - tig0025825:15610-15629 None:intergenic 45.0%
GTAGCTTTCATCAAGCTTGC+AGG + tig0025825:15625-15644 Msa1425110:three_prime_UTR 45.0%
CCAGAAATTATCTGCGGTAG+CGG + tig0025825:15676-15695 Msa1425110:three_prime_UTR 45.0%
ATTGAGAAGGATGGCAGCAA+TGG - tig0025825:15930-15949 Msa1425120:CDS 45.0%
GAGCTTGTGTCTTGTCTACA+AGG + tig0025825:15961-15980 Msa1425110:three_prime_UTR 45.0%
TGTGTCTTGTCTACAAGGTC+TGG + tig0025825:15966-15985 Msa1425110:three_prime_UTR 45.0%
GTGTCTTGTCTACAAGGTCT+GGG + tig0025825:15967-15986 Msa1425110:three_prime_UTR 45.0%
TACCCTTGTACAACCTTTGG+AGG + tig0025825:16008-16027 Msa1425110:three_prime_UTR 45.0%
CACCTCCAAAGGTTGTACAA+GGG - tig0025825:16013-16032 Msa1425120:CDS 45.0%
TCATGACAATCCACCTCCAA+AGG - tig0025825:16024-16043 Msa1425120:CDS 45.0%
AAATGTTGGCGCAGGTCTAT+TGG - tig0025825:16139-16158 Msa1425120:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + tig0025825:16474-16493 Msa1425110:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - tig0025825:16638-16657 Msa1425120:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG + tig0025825:16661-16680 Msa1425110:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + tig0025825:16671-16690 Msa1425110:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0025825:16817-16836 Msa1425120:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0025825:16818-16837 Msa1425120:intron 45.0%
CTCTGGTGCAGAAGTAAATC+TGG - tig0025825:16991-17010 Msa1425120:CDS 45.0%
! GGAGATGTAATGTTTGGCTC+TGG - tig0025825:17008-17027 Msa1425120:CDS 45.0%
GCTATGGGAGCTATTGAAGA+AGG - tig0025825:17029-17048 Msa1425120:CDS 45.0%
AATAGCTCCCATAGCCTTCA+TGG + tig0025825:17034-17053 Msa1425110:three_prime_UTR 45.0%
GATGAAAGCCATGAAGGCTA+TGG - tig0025825:17045-17064 Msa1425120:CDS 45.0%
GAGACGAATTCAGGAAGCAA+TGG - tig0025825:17102-17121 Msa1425120:CDS 45.0%
GTCCACAATGGTACATTCAC+AGG - tig0025825:17159-17178 Msa1425120:intron 45.0%
! ATGGGCTAACTTGTCCACAA+TGG - tig0025825:17171-17190 Msa1425120:intron 45.0%
GGAAGCTATTGATCCTGAAG+AGG - tig0025825:17267-17286 Msa1425120:CDS 45.0%
GTGAAGTAGAAGATGAGGCT+GGG - tig0025825:17328-17347 Msa1425120:CDS 45.0%
!! ACCCTCTGCTTTAATGGGTT+CGG + tig0025825:17355-17374 Msa1425110:three_prime_UTR 45.0%
!!! TTATTTTTTTATTTATGATA+TGG - tig0025825:12495-12514 None:intergenic 5.0%
!! AAAAATATAAACAATTAAAA+AGG + tig0025825:15364-15383 Msa1425110:three_prime_UTR 5.0%
! GGAGTGAAGGATGGTGATGA+TGG - tig0025825:12012-12031 None:intergenic 50.0%
GATGGAGCTGAAGCTGTGAA+AGG + tig0025825:13361-13380 Msa1425110:CDS 50.0%
!! AGACAAGGAATGGGTGTTGG+AGG + tig0025825:13606-13625 Msa1425110:CDS 50.0%
!! AATGGGTGTTGGAGGAGGAA+CGG + tig0025825:13614-13633 Msa1425110:CDS 50.0%
CAGCCCTACGGATTTGATGT+AGG + tig0025825:13856-13875 Msa1425110:intron 50.0%
TGCTAGAGTCACTTCTCACC+TGG - tig0025825:13948-13967 None:intergenic 50.0%
GTTCCTCCTGAACTTGCCTA+CGG + tig0025825:14336-14355 Msa1425110:CDS 50.0%
TGAACTTGCCTACGGAAGCA+GGG + tig0025825:14344-14363 Msa1425110:CDS 50.0%
GCATCTGAACTCATGTTGGC+AGG + tig0025825:14829-14848 Msa1425110:intron 50.0%
! CAAGTTGGAGGAATCAGTGG+TGG - tig0025825:15486-15505 None:intergenic 50.0%
ACAAGACTACCACTTTGCGG+AGG - tig0025825:15607-15626 None:intergenic 50.0%
CCGCTACCGCAGATAATTTC+TGG - tig0025825:15679-15698 None:intergenic 50.0%
! GAAATTATCTGCGGTAGCGG+TGG + tig0025825:15679-15698 Msa1425110:three_prime_UTR 50.0%
CCACCTCCAAAGGTTGTACA+AGG - tig0025825:16014-16033 Msa1425120:CDS 50.0%
! CCTTGTACAACCTTTGGAGG+TGG + tig0025825:16011-16030 Msa1425110:three_prime_UTR 50.0%
!! GTATGATACGGAGTGTTGGG+CGG + tig0025825:16430-16449 Msa1425110:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + tig0025825:16494-16513 Msa1425110:intron 50.0%
TGACACCATTCGAGAGAGAG+TGG + tig0025825:16544-16563 Msa1425110:intron 50.0%
GACACCATTCGAGAGAGAGT+GGG + tig0025825:16545-16564 Msa1425110:intron 50.0%
ACACCATTCGAGAGAGAGTG+GGG + tig0025825:16546-16565 Msa1425110:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0025825:16813-16832 Msa1425120:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0025825:16819-16838 Msa1425120:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0025825:16816-16835 Msa1425110:intron 50.0%
AGAGCAGCAGAGACGAATTC+AGG - tig0025825:17111-17130 Msa1425120:CDS 50.0%
TGAAGAGGACAGAGCTCTAC+TGG - tig0025825:17252-17271 Msa1425120:CDS 50.0%
AGTAGAGCTCTGTCCTCTTC+AGG + tig0025825:17251-17270 Msa1425110:intron 50.0%
GGTGAAGTAGAAGATGAGGC+TGG - tig0025825:17329-17348 Msa1425120:CDS 50.0%
CCCGAACCCATTAAAGCAGA+GGG - tig0025825:17359-17378 Msa1425120:CDS 50.0%
!! CCCTCTGCTTTAATGGGTTC+GGG + tig0025825:17356-17375 Msa1425110:three_prime_UTR 50.0%
TCCCGAACCCATTAAAGCAG+AGG - tig0025825:17360-17379 Msa1425120:CDS 50.0%
AAGGATCGCGTGTCGCAGTA+CGG + tig0025825:13380-13399 Msa1425110:intron 55.0%
!! CAAGGAATGGGTGTTGGAGG+AGG + tig0025825:13609-13628 Msa1425110:CDS 55.0%
GATGTAGGCGAATCTGCGAG+AGG + tig0025825:13871-13890 Msa1425110:CDS 55.0%
CTTCCGTAGGCAAGTTCAGG+AGG - tig0025825:14342-14361 None:intergenic 55.0%
CTGCTTCCGTAGGCAAGTTC+AGG - tig0025825:14345-14364 None:intergenic 55.0%
CTGAACTTGCCTACGGAAGC+AGG + tig0025825:14343-14362 Msa1425110:CDS 55.0%
GAACTTGCCTACGGAAGCAG+GGG + tig0025825:14345-14364 Msa1425110:CDS 55.0%
CTAGAGACGGAAGGGGTAAG+TGG - tig0025825:14683-14702 None:intergenic 55.0%
CTGGTAGGGCTGCTCTTCTA+GGG - tig0025825:15181-15200 None:intergenic 55.0%
TCTGGTAGGGCTGCTCTTCT+AGG - tig0025825:15182-15201 None:intergenic 55.0%
AGAAGAGCAGCCCTACCAGA+TGG + tig0025825:15182-15201 Msa1425110:three_prime_UTR 55.0%
CTGGCACTCTGCTCACTTTG+TGG - tig0025825:15660-15679 None:intergenic 55.0%
GGCATGACAAATACAGGCCC+AGG - tig0025825:16115-16134 Msa1425120:CDS 55.0%
TGTTGGCGCAGGTCTATTGG+TGG - tig0025825:16136-16155 Msa1425120:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + tig0025825:16486-16505 Msa1425110:intron 55.0%
CACCATTCGAGAGAGAGTGG+GGG + tig0025825:16547-16566 Msa1425110:intron 55.0%
TACCCCCACTCTCTCTCGAA+TGG - tig0025825:16552-16571 Msa1425120:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0025825:16805-16824 Msa1425120:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0025825:16804-16823 Msa1425110:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0025825:16805-16824 Msa1425110:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0025825:16811-16830 Msa1425110:intron 55.0%
! GGAGTAGAGGGCATGCGAGT+TGG + tig0025825:13919-13938 Msa1425110:CDS 60.0%
! GTAGAGGGCATGCGAGTTGG+AGG + tig0025825:13922-13941 Msa1425110:CDS 60.0%
TTGGACTCCCCTGCTTCCGT+AGG - tig0025825:14355-14374 None:intergenic 60.0%
! GTAGGGCTGCTCTTCTAGGG+CGG - tig0025825:15178-15197 None:intergenic 60.0%
CTAGCAGCACCTCCGCAAAG+TGG + tig0025825:15595-15614 Msa1425110:three_prime_UTR 60.0%
CTTCGTATGGTGGCCCTGCA+TGG + tig0025825:15883-15902 Msa1425110:three_prime_UTR 60.0%
! GGGCATGCGAGTTGGAGGCC+AGG + tig0025825:13927-13946 Msa1425110:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0025825 gene 11874 17394 11874 ID=Msa1425110;Name=Msa1425110
tig0025825 mRNA 11874 17394 11874 ID=Msa1425110-mRNA-1;Parent=Msa1425110;Name=Msa1425110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=115|1|1|1|0.66|0.53|13|1264|236
tig0025825 exon 11874 12064 11874 ID=Msa1425110-mRNA-1:exon:4143;Parent=Msa1425110-mRNA-1
tig0025825 exon 12164 12316 12164 ID=Msa1425110-mRNA-1:exon:4144;Parent=Msa1425110-mRNA-1
tig0025825 exon 12428 12483 12428 ID=Msa1425110-mRNA-1:exon:4145;Parent=Msa1425110-mRNA-1
tig0025825 exon 12907 12962 12907 ID=Msa1425110-mRNA-1:exon:4146;Parent=Msa1425110-mRNA-1
tig0025825 exon 13339 13396 13339 ID=Msa1425110-mRNA-1:exon:4147;Parent=Msa1425110-mRNA-1
tig0025825 exon 13561 13635 13561 ID=Msa1425110-mRNA-1:exon:4148;Parent=Msa1425110-mRNA-1
tig0025825 exon 13859 13948 13859 ID=Msa1425110-mRNA-1:exon:4149;Parent=Msa1425110-mRNA-1
tig0025825 exon 14324 14401 14324 ID=Msa1425110-mRNA-1:exon:4150;Parent=Msa1425110-mRNA-1
tig0025825 exon 14977 15017 14977 ID=Msa1425110-mRNA-1:exon:4151;Parent=Msa1425110-mRNA-1
tig0025825 exon 15100 15804 15100 ID=Msa1425110-mRNA-1:exon:4152;Parent=Msa1425110-mRNA-1
tig0025825 exon 15880 16144 15880 ID=Msa1425110-mRNA-1:exon:4153;Parent=Msa1425110-mRNA-1
tig0025825 exon 16980 17158 16980 ID=Msa1425110-mRNA-1:exon:4154;Parent=Msa1425110-mRNA-1
tig0025825 exon 17252 17394 17252 ID=Msa1425110-mRNA-1:exon:4155;Parent=Msa1425110-mRNA-1
tig0025825 five_prime_UTR 11874 11988 11874 ID=Msa1425110-mRNA-1:five_prime_utr;Parent=Msa1425110-mRNA-1
tig0025825 CDS 11989 12064 11989 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 12164 12316 12164 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 12428 12483 12428 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 12907 12962 12907 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 13339 13396 13339 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 13561 13635 13561 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 13859 13948 13859 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 14324 14401 14324 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 14977 15017 14977 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 CDS 15100 15127 15100 ID=Msa1425110-mRNA-1:cds;Parent=Msa1425110-mRNA-1
tig0025825 three_prime_UTR 15128 15804 15128 ID=Msa1425110-mRNA-1:three_prime_utr;Parent=Msa1425110-mRNA-1
tig0025825 three_prime_UTR 15880 16144 15880 ID=Msa1425110-mRNA-1:three_prime_utr;Parent=Msa1425110-mRNA-1
tig0025825 three_prime_UTR 16980 17158 16980 ID=Msa1425110-mRNA-1:three_prime_utr;Parent=Msa1425110-mRNA-1
tig0025825 three_prime_UTR 17252 17394 17252 ID=Msa1425110-mRNA-1:three_prime_utr;Parent=Msa1425110-mRNA-1
Gene Sequence

>Msa1425110

ATGGAACTCTCTCTTCTCAACCATCATCACCATCCTTCACTCCTTCATTGCACTCTCACATCCAATCTCTTCACAAGAACACACAAAAGACTTTACAAGAAAAGTTCAAATAGGTTAATACCATGCAGCTGTTCACATTCTTCATCCAGTAAAACTGTTGTAGAACCAATCTCCATGTCTTTACAAATTGAAGGAAGGAGAACATTACTCACTTCTCTCCTCACAACATTTGCTGGAGTCTATGCATGTGATGTGGCTGAAGCTGTTAGCACTAGTAGAAGAGCTCTAAGAGGAGCCAAAATTCCTGAAAGTGATTTCAAAACTTTGCCCAATGGTCTCAAGTACTATGATTTGAAGGTTGGCGATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACCTTCATGACTAGTAGACAAGGAATGGGTGTTGGAGGAGGAACGCCCTACGGATTTGATGTAGGCGAATCTGCGAGAGGAAATGTCTTAAAAGGTTTGGATGTAGGAGTAGAGGGCATGCGAGTTGGAGGCCAGCGGTTGTTAATTGTTCCTCCTGAACTTGCCTACGGAAGCAGGGGAGTCCAAGAAATTCCTCCAAATGCAACAATAGAGATGGATATTGAACTGCTTGCCATCAAACAAAGTCCATTTGGGACTGCCGTAAAGATTGTTGAAGGCTAA

Protein sequence

>Msa1425110

MELSLLNHHHHPSLLHCTLTSNLFTRTHKRLYKKSSNRLIPCSCSHSSSSKTVVEPISMSLQIEGRRTLLTSLLTTFAGVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESARGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGSRGVQEIPPNATIEMDIELLAIKQSPFGTAVKIVEG*