AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449950 MtrunA17_Chr3g0087781 77.385 283 9 5 28 260 1 278 6.57e-146 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449950 AT5G26880.1 54.297 256 69 4 49 259 10 262 5.16e-85 254

Find 85 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCCTTGATCAGGTTTC+AGG 0.229973 3_3:-34934686 None:intergenic
CAAATTAACTCTCCTAAAAT+AGG 0.278972 3_3:-34934711 None:intergenic
CAACTAAACTAGACGTTTGT+TGG 0.299421 3_3:+34934911 Msa0449950:three_prime_UTR
GGTAGTGAGAGAAGAGGAAA+TGG 0.326197 3_3:-34928460 None:intergenic
CTGTTGGACTACACTTAGTT+GGG 0.340052 3_3:+34932212 Msa0449950:CDS
CTGCTGCTGCTGCTAGGTTG+AGG 0.342733 3_3:-34928356 None:intergenic
TTGCAATCTAACAACGCTTC+AGG 0.351137 3_3:-34934386 None:intergenic
TGTTGTTCTTGGTAGATTCC+AGG 0.384664 3_3:+34932151 Msa0449950:intron
GCAATGCAGCCAGTGTTTCC+TGG 0.391133 3_3:-34932169 None:intergenic
ACACTTCAGTCTGGTTGAAC+TGG 0.393113 3_3:+34934850 Msa0449950:three_prime_UTR
GCCAGTTCAACTAGTTGAAT+CGG 0.406523 3_3:+34934791 Msa0449950:three_prime_UTR
TGCTGCTGCTGCTAGGTTGA+GGG 0.408927 3_3:-34928355 None:intergenic
ACTAGTTGAACTGGCCGGTT+CGG 0.409751 3_3:-34934783 None:intergenic
CTGACATATGTTTCAACCAT+TGG 0.414032 3_3:-34934443 None:intergenic
GTTTGGATCGAAAATGAAAA+GGG 0.415927 3_3:-34928389 None:intergenic
AGTCTCAAGGCAACAGGAAA+TGG 0.416150 3_3:-34928327 None:intergenic
CCCGATTCAACTAGTTGAAC+TGG 0.424180 3_3:-34934792 None:intergenic
AATACAGAGAACATTCCCTT+TGG 0.424249 3_3:+34934632 Msa0449950:three_prime_UTR
AGTTGTGCTTGTTTCACCTC+AGG 0.425774 3_3:+34928823 Msa0449950:CDS
TTATTTGGTGCTGAAACTAC+TGG 0.427265 3_3:+34934356 Msa0449950:CDS
ATCATGTTTACACTTCAGTC+TGG 0.436143 3_3:+34934841 Msa0449950:three_prime_UTR
ATACAGAGAACATTCCCTTT+GGG 0.443228 3_3:+34934633 Msa0449950:three_prime_UTR
GCTGTTGGACTACACTTAGT+TGG 0.447539 3_3:+34932211 Msa0449950:CDS
AGTGAGAGAAGAGGAAATGG+AGG 0.452854 3_3:-34928457 None:intergenic
TTGATAGTTCCACCACCATA+TGG 0.454641 3_3:-34934416 None:intergenic
CAACTAGTTGAATCGGGAAC+TGG 0.456728 3_3:+34934798 Msa0449950:three_prime_UTR
AGTTTGGATCGAAAATGAAA+AGG 0.457319 3_3:-34928390 None:intergenic
GATTTCAGTCTCAAGGCAAC+AGG 0.461105 3_3:-34928333 None:intergenic
TGACATATGTTTCAACCATT+GGG 0.461962 3_3:-34934442 None:intergenic
ATAGGACTATGCCCTTGATC+AGG 0.462101 3_3:-34934693 None:intergenic
AGGAGACAAGGTCATTTATG+AGG 0.467739 3_3:-34934976 None:intergenic
GAAGAGGAAATGGAGGGAAA+AGG 0.480575 3_3:-34928450 None:intergenic
TTGCCACATGGTGTTGGAGA+GGG 0.501044 3_3:+34928767 Msa0449950:CDS
TGAGTGTTCCACTTGGAACT+TGG 0.502912 3_3:-34928243 None:intergenic
CACTCTCTGCATCGGATAGA+CGG 0.514454 3_3:+34928267 Msa0449950:CDS
TGGTACAGGAAGGTGAAAAG+AGG 0.523032 3_3:+34933733 Msa0449950:intron
GGTAGTTTGCCACATGGTGT+TGG 0.523607 3_3:+34928761 Msa0449950:CDS
CATGACCTGAAACCTGATCA+AGG 0.526495 3_3:+34934681 Msa0449950:three_prime_UTR
GATTGCAAAACTGAACCATA+TGG 0.527813 3_3:+34934401 Msa0449950:CDS
CCAGTTCAACTAGTTGAATC+GGG 0.536810 3_3:+34934792 Msa0449950:three_prime_UTR
TCGGGAACTGGCGAGTTCGT+TGG 0.539187 3_3:+34934810 Msa0449950:three_prime_UTR
GAGAATGAGATAAAGAAGGA+AGG 0.539421 3_3:+34928740 Msa0449950:CDS
CAATGGTTGAAACATATGTC+AGG 0.541341 3_3:+34934444 Msa0449950:CDS
ACATGTGCAGCATCAGCTGT+TGG 0.543758 3_3:+34932196 Msa0449950:CDS
ATGGAGGGAAAAGGTGAGGT+GGG 0.544197 3_3:-34928441 None:intergenic
TGCCACATGGTGTTGGAGAG+GGG 0.544512 3_3:+34928768 Msa0449950:CDS
TGCTGAGAATGAGATAAAGA+AGG 0.546980 3_3:+34928736 Msa0449950:CDS
GTTGCTAGCATTTACAAAGA+GGG 0.563609 3_3:+34933755 Msa0449950:CDS
GTTGAGGGATTTCAGTCTCA+AGG 0.565764 3_3:-34928340 None:intergenic
GCAGCAGCATTGTGAAGCGA+TGG 0.573322 3_3:+34928299 Msa0449950:CDS
TTGAATCTATCAGTAAGTGT+TGG 0.576824 3_3:+34934470 Msa0449950:CDS
ATTACTGGTAGTGAGAGAAG+AGG 0.577119 3_3:-34928466 None:intergenic
CAATCTAACAACGCTTCAGG+TGG 0.577296 3_3:-34934383 None:intergenic
TGGTAGATTCCAGGAAACAC+TGG 0.577588 3_3:+34932160 Msa0449950:intron
GAACTGGCGAGTTCGTTGGT+CGG 0.578482 3_3:+34934814 Msa0449950:three_prime_UTR
CGGTTTGACCACTTCAATCG+TGG 0.585514 3_3:-34934879 None:intergenic
GTGAGAGAAGAGGAAATGGA+GGG 0.590075 3_3:-34928456 None:intergenic
GGTTGCTAGCATTTACAAAG+AGG 0.596965 3_3:+34933754 Msa0449950:CDS
AATGGAGGGAAAAGGTGAGG+TGG 0.597678 3_3:-34928442 None:intergenic
CAATTAAGAGAAAACCCAAA+GGG 0.603120 3_3:-34934647 None:intergenic
ACACTCACCACTCTCTGCAT+CGG 0.603314 3_3:+34928259 Msa0449950:CDS
CAAAACATTACGAGGAGACA+AGG 0.603854 3_3:-34934988 None:intergenic
GGAAATGGAGGGAAAAGGTG+AGG 0.608641 3_3:-34928445 None:intergenic
CGTCTATCCGATGCAGAGAG+TGG 0.609408 3_3:-34928266 None:intergenic
ATTCAACTAGTTGAACTGGC+CGG 0.609560 3_3:-34934788 None:intergenic
TTGCTAGCATTTACAAAGAG+GGG 0.609702 3_3:+34933756 Msa0449950:CDS
GTATCAATACATGTTTCTGA+AGG 0.615847 3_3:-34934545 None:intergenic
TGTTGGACTACACTTAGTTG+GGG 0.616424 3_3:+34932213 Msa0449950:CDS
GGAGACAAGGTCATTTATGA+GGG 0.617327 3_3:-34934975 None:intergenic
TTTGCCACATGGTGTTGGAG+AGG 0.620773 3_3:+34928766 Msa0449950:CDS
AGAAACATGTATTGATACTG+AGG 0.626640 3_3:+34934550 Msa0449950:CDS
ATGACCTGAAACCTGATCAA+GGG 0.629828 3_3:+34934682 Msa0449950:three_prime_UTR
AGAGTGGTGAGTGTTCCACT+TGG 0.640307 3_3:-34928250 None:intergenic
TCAATTAAGAGAAAACCCAA+AGG 0.646679 3_3:-34934648 None:intergenic
GGTTTGTACCACGATTGAAG+TGG 0.657466 3_3:+34934871 Msa0449950:three_prime_UTR
ATCCCCTCTCCAACACCATG+TGG 0.662675 3_3:-34928770 None:intergenic
AACATGTATTGATACTGAGG+AGG 0.664583 3_3:+34934553 Msa0449950:CDS
GCATGCTTCCAAGTTCCAAG+TGG 0.666688 3_3:+34928235 None:intergenic
TAGTTTAGTTGAATCATCCG+CGG 0.680304 3_3:-34934899 None:intergenic
TGGAACTATCAAGATCCCAA+TGG 0.684890 3_3:+34934427 Msa0449950:CDS
AAAACTGAACCATATGGTGG+TGG 0.685342 3_3:+34934407 Msa0449950:CDS
GTAAGCTGCAAAACATTACG+AGG 0.697801 3_3:-34934996 None:intergenic
AAGGAAGGTAGTTTGCCACA+TGG 0.704326 3_3:+34928755 Msa0449950:CDS
TGCAAAACTGAACCATATGG+TGG 0.723796 3_3:+34934404 Msa0449950:CDS
CGATTGAAGTGGTCAAACCG+CGG 0.746429 3_3:+34934882 Msa0449950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAACTTTATAAAATTAA+AGG + chr3_3:34929590-34929609 Msa0449950:intron 10.0%
!! AAAAGCTTATTAATTTAATT+AGG + chr3_3:34930535-34930554 Msa0449950:intron 10.0%
!!! AGTTTTTTTATGAATATTAT+CGG + chr3_3:34931584-34931603 Msa0449950:intron 10.0%
!!! TTTTATAATGAATAAAGAAT+TGG - chr3_3:34933937-34933956 None:intergenic 10.0%
!! TAATTAAAACAACAAAATCA+AGG - chr3_3:34928651-34928670 None:intergenic 15.0%
!!! GTTTTGTTTTTTTGTTTAAA+TGG + chr3_3:34928683-34928702 Msa0449950:intron 15.0%
!! ATAGTTATTCGTATATATTT+CGG - chr3_3:34928880-34928899 None:intergenic 15.0%
!!! ATTTTATGACTATTTCAAAA+AGG + chr3_3:34929016-34929035 Msa0449950:intron 15.0%
!! AGTAAAATTTAACAAAGTTA+GGG - chr3_3:34929043-34929062 None:intergenic 15.0%
!!! TAAAGAGTAAATATTCATTT+TGG - chr3_3:34929521-34929540 None:intergenic 15.0%
!!! ACATCTTATAATGTATATTT+TGG + chr3_3:34929686-34929705 Msa0449950:intron 15.0%
!!! TTTTGTATTTTTAGAACTAT+TGG + chr3_3:34929821-34929840 Msa0449950:intron 15.0%
!!! TTTGTATTTTTAGAACTATT+GGG + chr3_3:34929822-34929841 Msa0449950:intron 15.0%
!! AAATGTAATATACTCATATA+CGG - chr3_3:34930607-34930626 None:intergenic 15.0%
!! ATAGATATAGATAATAAATG+TGG - chr3_3:34930632-34930651 None:intergenic 15.0%
!! AACTGAAATAATAATAATTG+TGG - chr3_3:34930694-34930713 None:intergenic 15.0%
!! TCAATTGTAAAATTTATAGA+TGG - chr3_3:34930927-34930946 None:intergenic 15.0%
!!! GCTAATAATTATATTTTTGT+TGG + chr3_3:34931422-34931441 Msa0449950:intron 15.0%
!!! TAGTTTTTTTTTTTTTTACC+AGG + chr3_3:34932852-34932871 Msa0449950:intron 15.0%
!! TGCTATTATTAACATATATT+AGG - chr3_3:34932913-34932932 None:intergenic 15.0%
!! ATATGTTAATAATAGCAATT+TGG + chr3_3:34932916-34932935 Msa0449950:intron 15.0%
!! AAATTTGATACAATACTTAT+AGG + chr3_3:34934011-34934030 Msa0449950:intron 15.0%
!!! GTTTTTTCTTTTTTTACTTT+AGG + chr3_3:34934059-34934078 Msa0449950:intron 15.0%
!! ATATTACTTAATGTGTTAAA+CGG + chr3_3:34934221-34934240 Msa0449950:intron 15.0%
!!! CTTTTTTTGAAAACTTTGTA+TGG + chr3_3:34928583-34928602 Msa0449950:intron 20.0%
!! CATATATTCAAGTATTCAAA+TGG - chr3_3:34928903-34928922 None:intergenic 20.0%
!! CAGTAAAATTTAACAAAGTT+AGG - chr3_3:34929044-34929063 None:intergenic 20.0%
!!! ATAGTGACTTGTTAAAATAT+AGG + chr3_3:34929134-34929153 Msa0449950:intron 20.0%
!!! TAGTGACTTGTTAAAATATA+GGG + chr3_3:34929135-34929154 Msa0449950:intron 20.0%
!! AGATTATGAATATTTCGAAA+AGG - chr3_3:34929191-34929210 None:intergenic 20.0%
!! TTCGAAATATTCATAATCTT+AGG + chr3_3:34929192-34929211 Msa0449950:intron 20.0%
!! TCGAAATATTCATAATCTTA+GGG + chr3_3:34929193-34929212 Msa0449950:intron 20.0%
!!! TGTAATTTTTATATACTCAG+AGG - chr3_3:34929273-34929292 None:intergenic 20.0%
!! TTGTCTTATGTTAGTTAATT+TGG + chr3_3:34929367-34929386 Msa0449950:intron 20.0%
!! CTTCTGTTATTAATTAATCA+TGG - chr3_3:34929425-34929444 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAATTGT+AGG + chr3_3:34929939-34929958 Msa0449950:intron 20.0%
!! CTGTAATTATTATATTGAGA+GGG + chr3_3:34930292-34930311 Msa0449950:intron 20.0%
!! AATGTAATATACTCATATAC+GGG - chr3_3:34930606-34930625 None:intergenic 20.0%
!!! AAGATTTTAGATTATCTGTT+GGG - chr3_3:34931323-34931342 None:intergenic 20.0%
!!! TCATAATATTGGTTATTCTT+TGG - chr3_3:34931858-34931877 None:intergenic 20.0%
!!! AAAACTGTATATAGTTTTTG+AGG + chr3_3:34931898-34931917 Msa0449950:intron 20.0%
!! TTTGATATTTATGTTGTTCT+TGG + chr3_3:34932140-34932159 Msa0449950:intron 20.0%
!! TTGTATTTAATAGTGTATAG+TGG + chr3_3:34932411-34932430 Msa0449950:intron 20.0%
!! ATTGAAATCTTTATCTCATT+TGG + chr3_3:34932636-34932655 Msa0449950:intron 20.0%
!! TAGATGTACTAAATTTGAAA+AGG - chr3_3:34933477-34933496 None:intergenic 20.0%
!! TTAATGGAAACAAATATAAC+AGG - chr3_3:34933563-34933582 None:intergenic 20.0%
!! TTCAAAAGAAAATAAAGTCT+TGG - chr3_3:34933914-34933933 None:intergenic 20.0%
!!! TTTTGATAGACCATTAATTA+TGG + chr3_3:34934286-34934305 Msa0449950:intron 20.0%
!!! TTAATTACTGAAGACATTTT+TGG + chr3_3:34934581-34934600 Msa0449950:CDS 20.0%
!!! TATTTTAGGAGAGTTAATTT+GGG + chr3_3:34934713-34934732 Msa0449950:three_prime_UTR 20.0%
! ATTATAGAATGTTATACCTG+AGG - chr3_3:34928842-34928861 None:intergenic 25.0%
! TTAACAAGTCACTATCAATT+TGG - chr3_3:34929129-34929148 None:intergenic 25.0%
!!! GTATATTTTGGTAGTTTGTT+TGG + chr3_3:34929698-34929717 Msa0449950:intron 25.0%
!!! TCTTACAGTTTTAGAGAAAT+TGG + chr3_3:34930029-34930048 Msa0449950:intron 25.0%
!!! CAAAAGACAATTTTGATTCT+TGG + chr3_3:34930228-34930247 Msa0449950:intron 25.0%
!!! ACAATTTTGATTCTTGGTTA+AGG + chr3_3:34930234-34930253 Msa0449950:intron 25.0%
! GCTGTAATTATTATATTGAG+AGG + chr3_3:34930291-34930310 Msa0449950:intron 25.0%
! TAATTATTATATTGAGAGGG+CGG + chr3_3:34930295-34930314 Msa0449950:intron 25.0%
! GCTTATTAATTTAATTAGGC+CGG + chr3_3:34930539-34930558 Msa0449950:intron 25.0%
! CTTATTAATTTAATTAGGCC+GGG + chr3_3:34930540-34930559 Msa0449950:intron 25.0%
!! GTTATCATTTAAGACTCTTA+TGG + chr3_3:34930782-34930801 Msa0449950:intron 25.0%
! TAATAATCATACTTGACCTT+AGG - chr3_3:34930850-34930869 None:intergenic 25.0%
! TGAAATTTGTAACACAAACT+AGG + chr3_3:34931044-34931063 Msa0449950:intron 25.0%
!! GAAGATTTTAGATTATCTGT+TGG - chr3_3:34931324-34931343 None:intergenic 25.0%
!! AAGTTGTCATATTGATTAAC+TGG + chr3_3:34931469-34931488 Msa0449950:intron 25.0%
!! AGTTGTCATATTGATTAACT+GGG + chr3_3:34931470-34931489 Msa0449950:intron 25.0%
! TTTATGAATATTATCGGAGT+TGG + chr3_3:34931590-34931609 Msa0449950:intron 25.0%
! CTGTATTAAAATTGAGTACA+AGG + chr3_3:34931924-34931943 Msa0449950:intron 25.0%
! AAGAACGAAATAAGTAAAAG+TGG + chr3_3:34931963-34931982 Msa0449950:intron 25.0%
! AGAACGAAATAAGTAAAAGT+GGG + chr3_3:34931964-34931983 Msa0449950:intron 25.0%
! AAAGTAAATTTACAGTAGAG+GGG - chr3_3:34932069-34932088 None:intergenic 25.0%
! CAAAGTAAATTTACAGTAGA+GGG - chr3_3:34932070-34932089 None:intergenic 25.0%
! TAAAATCTCTCAATTACCAA+AGG + chr3_3:34932113-34932132 Msa0449950:intron 25.0%
! AAAATCTCTCAATTACCAAA+GGG + chr3_3:34932114-34932133 Msa0449950:intron 25.0%
! ATAAATATCAAAGAACCCTT+TGG - chr3_3:34932132-34932151 None:intergenic 25.0%
! AAGCATATATGATATATCCA+AGG - chr3_3:34932609-34932628 None:intergenic 25.0%
!! TGTTGTTCAGTTTGATTTAA+CGG - chr3_3:34932750-34932769 None:intergenic 25.0%
! TGAAAAAATTGAACTGTGAT+GGG + chr3_3:34932771-34932790 Msa0449950:intron 25.0%
!! GACATTTCAGTTTTCTATTA+AGG + chr3_3:34932978-34932997 Msa0449950:intron 25.0%
! AAAATTATTAATGCGAGTAC+AGG + chr3_3:34933150-34933169 Msa0449950:intron 25.0%
! AAACAATTTCTCTTTACACA+CGG + chr3_3:34933254-34933273 Msa0449950:intron 25.0%
! TTAGATGAAACTATTAGATC+AGG - chr3_3:34933509-34933528 None:intergenic 25.0%
! TATCTGCAAATTTGTGTTAA+TGG - chr3_3:34933579-34933598 None:intergenic 25.0%
! TTGTTAAAATTCACGATTCT+TGG + chr3_3:34933604-34933623 Msa0449950:intron 25.0%
! TGTTAAAATTCACGATTCTT+GGG + chr3_3:34933605-34933624 Msa0449950:intron 25.0%
! AGAGAAATGCTATCATTAAA+GGG - chr3_3:34933832-34933851 None:intergenic 25.0%
! TAGAGAAATGCTATCATTAA+AGG - chr3_3:34933833-34933852 None:intergenic 25.0%
! TCAAACCAAACAAATTCTTA+TGG + chr3_3:34933960-34933979 Msa0449950:intron 25.0%
!! ATCATCCATAAGAATTTGTT+TGG - chr3_3:34933968-34933987 None:intergenic 25.0%
! TGATACAATACTTATAGGAA+TGG + chr3_3:34934016-34934035 Msa0449950:intron 25.0%
!! TATTTCAAAATTGTTGGTGA+TGG + chr3_3:34934097-34934116 Msa0449950:intron 25.0%
! TTTCCATATATTGTTTGCAA+CGG - chr3_3:34934179-34934198 None:intergenic 25.0%
! ATACAAGGAACCATAATTAA+TGG - chr3_3:34934299-34934318 None:intergenic 25.0%
!! AAAGGCGATTATCTTTTATT+TGG + chr3_3:34934341-34934360 Msa0449950:CDS 25.0%
! CAAATTAACTCTCCTAAAAT+AGG - chr3_3:34934714-34934733 None:intergenic 25.0%
!!! CTATTTTAGGAGAGTTAATT+TGG + chr3_3:34934712-34934731 Msa0449950:three_prime_UTR 25.0%
GTTTGGATCGAAAATGAAAA+GGG - chr3_3:34928392-34928411 None:intergenic 30.0%
AGTTTGGATCGAAAATGAAA+AGG - chr3_3:34928393-34928412 None:intergenic 30.0%
! TGTTTAAATGGTGTTCTAGA+TGG + chr3_3:34928695-34928714 Msa0449950:intron 30.0%
CGTATATATTTCGGTAAATC+TGG - chr3_3:34928871-34928890 None:intergenic 30.0%
TACAAAGTCACAGACTAATT+TGG - chr3_3:34928973-34928992 None:intergenic 30.0%
AGAATATGCTAAAGACTGAA+TGG + chr3_3:34929079-34929098 Msa0449950:intron 30.0%
ATAGTAGGTGGATAAACTTA+GGG + chr3_3:34929102-34929121 Msa0449950:intron 30.0%
CTGACACTTTATTAGAGTTA+CGG + chr3_3:34929164-34929183 Msa0449950:intron 30.0%
ACTAGCAAAAGACAAATTCA+TGG - chr3_3:34929303-34929322 None:intergenic 30.0%
! AAGTATGTCGTTTGTTAGTT+TGG + chr3_3:34929336-34929355 Msa0449950:intron 30.0%
TGACTGTGATTCACATATAA+AGG + chr3_3:34929853-34929872 Msa0449950:intron 30.0%
GACTGTGATTCACATATAAA+GGG + chr3_3:34929854-34929873 Msa0449950:intron 30.0%
AGCAGTTGTATGATAAATCA+TGG + chr3_3:34930072-34930091 Msa0449950:intron 30.0%
TGATAAATCATGGAATTGCA+AGG + chr3_3:34930082-34930101 Msa0449950:intron 30.0%
! ATGGAATTGCAAGGTTATTT+TGG + chr3_3:34930091-34930110 Msa0449950:intron 30.0%
TAGAAATCATAATCCTCTCA+TGG + chr3_3:34930175-34930194 Msa0449950:intron 30.0%
AGAAATCATAATCCTCTCAT+GGG + chr3_3:34930176-34930195 Msa0449950:intron 30.0%
TTTGATTCTTGGTTAAGGAT+TGG + chr3_3:34930239-34930258 Msa0449950:intron 30.0%
TTGATTCTTGGTTAAGGATT+GGG + chr3_3:34930240-34930259 Msa0449950:intron 30.0%
ACTCATTTATTAAACGAGCT+AGG - chr3_3:34930498-34930517 None:intergenic 30.0%
!!! CTTTTTTATAAGCATAAGCC+CGG - chr3_3:34930561-34930580 None:intergenic 30.0%
TAATATACTCATATACGGGT+CGG - chr3_3:34930602-34930621 None:intergenic 30.0%
ATTGTGGTATGAGAATTTGA+AGG - chr3_3:34930678-34930697 None:intergenic 30.0%
!! TTGATTTGTGTGAACTGTTA+AGG + chr3_3:34930809-34930828 Msa0449950:intron 30.0%
ACAGAAACTCAAGAATAATC+AGG - chr3_3:34930904-34930923 None:intergenic 30.0%
!!! TCAAAGGCTTTATTTTAAGC+CGG - chr3_3:34931118-34931137 None:intergenic 30.0%
CTTAAAATAAAGCCTTTGAC+AGG + chr3_3:34931119-34931138 Msa0449950:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr3_3:34931258-34931277 Msa0449950:intron 30.0%
TGTGAATGTATACATGCTTA+AGG + chr3_3:34931446-34931465 Msa0449950:intron 30.0%
! GTTGTCATATTGATTAACTG+GGG + chr3_3:34931471-34931490 Msa0449950:intron 30.0%
GAGAAAATAATCTCTTCTCT+TGG - chr3_3:34931710-34931729 None:intergenic 30.0%
AACTCCTTAATACGCTAAAA+AGG + chr3_3:34931823-34931842 Msa0449950:intron 30.0%
!! AAGTCCTTTTTAGCGTATTA+AGG - chr3_3:34931830-34931849 None:intergenic 30.0%
GAACGAAATAAGTAAAAGTG+GGG + chr3_3:34931965-34931984 Msa0449950:intron 30.0%
CCAAAGTAAATTTACAGTAG+AGG - chr3_3:34932071-34932090 None:intergenic 30.0%
CCTCTACTGTAAATTTACTT+TGG + chr3_3:34932068-34932087 Msa0449950:intron 30.0%
GAAAAGATAGAGGAATACAA+AGG - chr3_3:34932521-34932540 None:intergenic 30.0%
! TTTTCAGCCATTAGGATATA+AGG + chr3_3:34932536-34932555 Msa0449950:intron 30.0%
! AAAAACTTTTCTACCATGCA+GGG + chr3_3:34932678-34932697 Msa0449950:intron 30.0%
!! TTTAACGGATCGTAAGTTTT+TGG - chr3_3:34932735-34932754 None:intergenic 30.0%
CTGAAAAAATTGAACTGTGA+TGG + chr3_3:34932770-34932789 Msa0449950:intron 30.0%
TGTAGTTCAGTTTAACAGTT+CGG + chr3_3:34932827-34932846 Msa0449950:intron 30.0%
TACAAATCGAATATTAAGCC+TGG - chr3_3:34932873-34932892 None:intergenic 30.0%
TCGTTCACAAAGAATTAGTT+TGG + chr3_3:34932945-34932964 Msa0449950:intron 30.0%
! AGAATTAGTTTGGTTCGAAA+AGG + chr3_3:34932955-34932974 Msa0449950:intron 30.0%
! GAATTAGTTTGGTTCGAAAA+GGG + chr3_3:34932956-34932975 Msa0449950:intron 30.0%
ATTAAGGACTAAAGTAGTTC+CGG + chr3_3:34932994-34933013 Msa0449950:intron 30.0%
AATTGTTTACTTGTTCCGAT+TGG - chr3_3:34933242-34933261 None:intergenic 30.0%
AGGAAGTTAATAGCATCAAA+AGG - chr3_3:34933305-34933324 None:intergenic 30.0%
!!! TCGTGATTATTTTTTGCAAC+AGG + chr3_3:34933635-34933654 Msa0449950:intron 30.0%
! ATTCCAGGAACTTAACTTTT+AGG - chr3_3:34933671-34933690 None:intergenic 30.0%
TAAATGACATCATAAGAGAC+AGG - chr3_3:34933875-34933894 None:intergenic 30.0%
AGTCTTGGATATTTACTTTC+TGG - chr3_3:34933899-34933918 None:intergenic 30.0%
TCGTCATATTGCAATATTGT+TGG - chr3_3:34933991-34934010 None:intergenic 30.0%
! TCACGCTATTTCAAAATTGT+TGG + chr3_3:34934091-34934110 Msa0449950:intron 30.0%
!! AAACTTAGATATGGTGCTAT+AGG - chr3_3:34934153-34934172 None:intergenic 30.0%
CAACGGATAAAACTTAGATA+TGG - chr3_3:34934162-34934181 None:intergenic 30.0%
TATCCGTTGCAAACAATATA+TGG + chr3_3:34934173-34934192 Msa0449950:intron 30.0%
TTCCAAAACAAGGCAATATA+AGG + chr3_3:34934259-34934278 Msa0449950:intron 30.0%
!!! TTCCTTATATTGCCTTGTTT+TGG - chr3_3:34934264-34934283 None:intergenic 30.0%
TGACATATGTTTCAACCATT+GGG - chr3_3:34934445-34934464 None:intergenic 30.0%
TTGAATCTATCAGTAAGTGT+TGG + chr3_3:34934470-34934489 Msa0449950:CDS 30.0%
! GTATCAATACATGTTTCTGA+AGG - chr3_3:34934548-34934567 None:intergenic 30.0%
! AGAAACATGTATTGATACTG+AGG + chr3_3:34934550-34934569 Msa0449950:CDS 30.0%
CAATTAAGAGAAAACCCAAA+GGG - chr3_3:34934650-34934669 None:intergenic 30.0%
TCAATTAAGAGAAAACCCAA+AGG - chr3_3:34934651-34934670 None:intergenic 30.0%
TTGACGAAAAAGAGAGAGTT+TGG - chr3_3:34928409-34928428 None:intergenic 35.0%
TGCTGAGAATGAGATAAAGA+AGG + chr3_3:34928736-34928755 Msa0449950:CDS 35.0%
GAGAATGAGATAAAGAAGGA+AGG + chr3_3:34928740-34928759 Msa0449950:CDS 35.0%
AAAGTCACAGACTAATTTGG+TGG - chr3_3:34928970-34928989 None:intergenic 35.0%
CTAAAGACTGAATGGATAGT+AGG + chr3_3:34929087-34929106 Msa0449950:intron 35.0%
GATAGTAGGTGGATAAACTT+AGG + chr3_3:34929101-34929120 Msa0449950:intron 35.0%
! CGTAACTCTAATAAAGTGTC+AGG - chr3_3:34929166-34929185 None:intergenic 35.0%
TTTGTATGGCACTCTCAAAT+AGG - chr3_3:34929220-34929239 None:intergenic 35.0%
!! AATTAGTCGCTGACTTTGTA+TGG - chr3_3:34929234-34929253 None:intergenic 35.0%
TACAAAGTCAGCGACTAATT+TGG + chr3_3:34929234-34929253 Msa0449950:intron 35.0%
! GAATTTGTCTTTTGCTAGTC+AGG + chr3_3:34929304-34929323 Msa0449950:intron 35.0%
AATAACAGAAGACACACTCA+AGG + chr3_3:34929434-34929453 Msa0449950:intron 35.0%
TGATATCGTCTCACACATTT+AGG + chr3_3:34929493-34929512 Msa0449950:intron 35.0%
! ATGCACTGATGAAGTAAAGT+AGG + chr3_3:34929557-34929576 Msa0449950:intron 35.0%
! TGCACTGATGAAGTAAAGTA+GGG + chr3_3:34929558-34929577 Msa0449950:intron 35.0%
ATTTGTCTTTGAACGTGAGA+CGG + chr3_3:34929626-34929645 Msa0449950:intron 35.0%
TATGTCTTTCGCTAGTAGTT+TGG + chr3_3:34929728-34929747 Msa0449950:intron 35.0%
TGGTCTTCGAATATGTTTGT+AGG + chr3_3:34929748-34929767 Msa0449950:intron 35.0%
GTCTTCTGTTAGAAATCTCA+AGG - chr3_3:34929787-34929806 None:intergenic 35.0%
TTCTAACAGAAGACACTCTT+TGG + chr3_3:34929793-34929812 Msa0449950:intron 35.0%
! CACAAACTAGGCTTTTAAAC+AGG + chr3_3:34931056-34931075 Msa0449950:intron 35.0%
! AGGCTTTTAAACAGGCTAAT+AGG + chr3_3:34931064-34931083 Msa0449950:intron 35.0%
!!! CAAAGGCTTTATTTTAAGCC+GGG - chr3_3:34931117-34931136 None:intergenic 35.0%
TAAAGCCTTTGACAGGTAAA+AGG + chr3_3:34931126-34931145 Msa0449950:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr3_3:34931263-34931282 Msa0449950:intron 35.0%
!!! TCTGTTGGGATCAAGTTTTT+TGG - chr3_3:34931309-34931328 None:intergenic 35.0%
TTAACTGGGGAAGTTTAGTT+AGG + chr3_3:34931484-34931503 Msa0449950:intron 35.0%
TAACTGGGGAAGTTTAGTTA+GGG + chr3_3:34931485-34931504 Msa0449950:intron 35.0%
CAGTGTTAAGTTTGTGCTAT+AGG + chr3_3:34931508-34931527 Msa0449950:intron 35.0%
AAGTTTGTGCTATAGGATTG+TGG + chr3_3:34931515-34931534 Msa0449950:intron 35.0%
! TAACCTAGTTCTTACCTCTT+TGG + chr3_3:34931645-34931664 Msa0449950:intron 35.0%
TAACCAAAGAGGTAAGAACT+AGG - chr3_3:34931651-34931670 None:intergenic 35.0%
GTTATGCAACACTGCTATAA+CGG + chr3_3:34932365-34932384 Msa0449950:intron 35.0%
TCATCCACCTTATATCCTAA+TGG - chr3_3:34932546-34932565 None:intergenic 35.0%
! GAAAAACTTTTCTACCATGC+AGG + chr3_3:34932677-34932696 Msa0449950:intron 35.0%
!! TCCCACAGTTTGGTTATTTT+CGG + chr3_3:34932804-34932823 Msa0449950:intron 35.0%
ACCGAAAATAACCAAACTGT+GGG - chr3_3:34932808-34932827 None:intergenic 35.0%
! TTTGTTATACCCGTTCAGTT+CGG + chr3_3:34933052-34933071 Msa0449950:intron 35.0%
! GTTTTACGGAACTGTTGTAA+TGG + chr3_3:34933074-34933093 Msa0449950:intron 35.0%
! TGACTCTAACCCTTTTACAA+TGG + chr3_3:34933173-34933192 Msa0449950:intron 35.0%
! GACTCTAACCCTTTTACAAT+GGG + chr3_3:34933174-34933193 Msa0449950:intron 35.0%
AACTTCGTCCCATTGTAAAA+GGG - chr3_3:34933185-34933204 None:intergenic 35.0%
TAACTTCGTCCCATTGTAAA+AGG - chr3_3:34933186-34933205 None:intergenic 35.0%
! AAGCTTTGTATACAAGCTAG+AGG + chr3_3:34933207-34933226 Msa0449950:intron 35.0%
TAGAGGATAATTGAGCCAAT+CGG + chr3_3:34933224-34933243 Msa0449950:intron 35.0%
!! TAGCATCAAAAGGAGTACTT+AGG - chr3_3:34933295-34933314 None:intergenic 35.0%
CTAGTAGACTGTTCGTTAAT+GGG - chr3_3:34933347-34933366 None:intergenic 35.0%
ACTAGTAGACTGTTCGTTAA+TGG - chr3_3:34933348-34933367 None:intergenic 35.0%
ATAAACCACGATAGACAGAT+AGG - chr3_3:34933378-34933397 None:intergenic 35.0%
AAAATTCACGATTCTTGGGA+AGG + chr3_3:34933609-34933628 Msa0449950:intron 35.0%
CATCCTAAAAGTTAAGTTCC+TGG + chr3_3:34933665-34933684 Msa0449950:intron 35.0%
ATAATTACGACGAAGATTCC+AGG - chr3_3:34933686-34933705 None:intergenic 35.0%
CTGTACTTGTCTCCATTATT+TGG + chr3_3:34933713-34933732 Msa0449950:intron 35.0%
TTGTCTCCATTATTTGGTAC+AGG + chr3_3:34933719-34933738 Msa0449950:intron 35.0%
GTTGCTAGCATTTACAAAGA+GGG + chr3_3:34933755-34933774 Msa0449950:CDS 35.0%
TTGCTAGCATTTACAAAGAG+GGG + chr3_3:34933756-34933775 Msa0449950:CDS 35.0%
! CTCTCTTTTCTTCCAAAACA+AGG + chr3_3:34934249-34934268 Msa0449950:intron 35.0%
! CAGGACTTTTCATACAGAAA+AGG + chr3_3:34934323-34934342 Msa0449950:intron 35.0%
!! TTATTTGGTGCTGAAACTAC+TGG + chr3_3:34934356-34934375 Msa0449950:CDS 35.0%
GATTGCAAAACTGAACCATA+TGG + chr3_3:34934401-34934420 Msa0449950:CDS 35.0%
CTGACATATGTTTCAACCAT+TGG - chr3_3:34934446-34934465 None:intergenic 35.0%
CAATGGTTGAAACATATGTC+AGG + chr3_3:34934444-34934463 Msa0449950:CDS 35.0%
! AACATGTATTGATACTGAGG+AGG + chr3_3:34934553-34934572 Msa0449950:CDS 35.0%
AATACAGAGAACATTCCCTT+TGG + chr3_3:34934632-34934651 Msa0449950:three_prime_UTR 35.0%
ATACAGAGAACATTCCCTTT+GGG + chr3_3:34934633-34934652 Msa0449950:three_prime_UTR 35.0%
!! TTTTAAAAACTCGACCGAAC+CGG + chr3_3:34934769-34934788 Msa0449950:three_prime_UTR 35.0%
ATCATGTTTACACTTCAGTC+TGG + chr3_3:34934841-34934860 Msa0449950:three_prime_UTR 35.0%
TAGTTTAGTTGAATCATCCG+CGG - chr3_3:34934902-34934921 None:intergenic 35.0%
CAACTAAACTAGACGTTTGT+TGG + chr3_3:34934911-34934930 Msa0449950:three_prime_UTR 35.0%
! ATTACTGGTAGTGAGAGAAG+AGG - chr3_3:34928469-34928488 None:intergenic 40.0%
AATTCTTCCGGTGGCAATTT+CGG - chr3_3:34928618-34928637 None:intergenic 40.0%
AGGAAGGAACTATAGTGACA+TGG - chr3_3:34928932-34928951 None:intergenic 40.0%
ATGTCACTATAGTTCCTTCC+TGG + chr3_3:34928931-34928950 Msa0449950:intron 40.0%
TGTCACTATAGTTCCTTCCT+GGG + chr3_3:34928932-34928951 Msa0449950:intron 40.0%
! TTTGTAGAGCGCTCTCAAAT+AGG + chr3_3:34928987-34929006 Msa0449950:intron 40.0%
AAGACTGAATGGATAGTAGG+TGG + chr3_3:34929090-34929109 Msa0449950:intron 40.0%
AAAGTCAGCGACTAATTTGG+TGG + chr3_3:34929237-34929256 Msa0449950:intron 40.0%
! TTGTCTTTTGCTAGTCAGGT+TGG + chr3_3:34929308-34929327 Msa0449950:intron 40.0%
! GCACTGATGAAGTAAAGTAG+GGG + chr3_3:34929559-34929578 Msa0449950:intron 40.0%
TGATGAAGTAAAGTAGGGGT+AGG + chr3_3:34929563-34929582 Msa0449950:intron 40.0%
TACTAGCGAAAGACATATCG+AGG - chr3_3:34929725-34929744 None:intergenic 40.0%
CACATATAAAGGGACTGTGA+TGG + chr3_3:34929864-34929883 Msa0449950:intron 40.0%
ATAATCCTCTCATGGGTCAT+GGG + chr3_3:34930183-34930202 Msa0449950:intron 40.0%
!! GCTTGATAGTGATATGCCTA+AGG + chr3_3:34930831-34930850 Msa0449950:intron 40.0%
AATCAGGTCTGATAACAGCA+AGG - chr3_3:34930888-34930907 None:intergenic 40.0%
!! ACCTTTTTGAAAGTCTGGCT+TGG - chr3_3:34931090-34931109 None:intergenic 40.0%
AAAAACTAAGGCCTAAGCCT+TGG - chr3_3:34931152-34931171 None:intergenic 40.0%
!!! AGGCCTTAGTTTTTTCAACC+AGG + chr3_3:34931158-34931177 Msa0449950:intron 40.0%
AGGCCTGGTTGAAAAAACTA+AGG - chr3_3:34931164-34931183 None:intergenic 40.0%
AGGCTTTGCTTAAATAGGCT+AGG - chr3_3:34931184-34931203 None:intergenic 40.0%
TAGCCTATTTAAGCAAAGCC+TGG + chr3_3:34931183-34931202 Msa0449950:intron 40.0%
TATTTAAGCAAAGCCTGGCT+CGG + chr3_3:34931188-34931207 Msa0449950:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr3_3:34931264-34931283 Msa0449950:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr3_3:34931265-34931284 Msa0449950:intron 40.0%
!!! TCAAGTTTTTTGGTAGTGGC+CGG - chr3_3:34931299-34931318 None:intergenic 40.0%
!!! GGGATCAAGTTTTTTGGTAG+TGG - chr3_3:34931303-34931322 None:intergenic 40.0%
! TTTTTGCACATGACAGGTCA+TGG - chr3_3:34931544-34931563 None:intergenic 40.0%
! AGAAGGTTTTTGCACATGAC+AGG - chr3_3:34931550-34931569 None:intergenic 40.0%
ACTCAAATCTGAGAGCAAGA+AGG - chr3_3:34931567-34931586 None:intergenic 40.0%
! CAACAGAGTTCTAACCAAAG+AGG - chr3_3:34931662-34931681 None:intergenic 40.0%
AGCGTATTAAGGAGTTCATC+AGG - chr3_3:34931819-34931838 None:intergenic 40.0%
TGTTGTTCTTGGTAGATTCC+AGG + chr3_3:34932151-34932170 Msa0449950:intron 40.0%
CTGTTGGACTACACTTAGTT+GGG + chr3_3:34932212-34932231 Msa0449950:CDS 40.0%
TGTTGGACTACACTTAGTTG+GGG + chr3_3:34932213-34932232 Msa0449950:CDS 40.0%
CACAATAGCGTAGCAGAATT+CGG - chr3_3:34932453-34932472 None:intergenic 40.0%
! TTCGCAGTGTTGTTAAATCG+CGG - chr3_3:34932485-34932504 None:intergenic 40.0%
CCTAATGGCTGAAAAGATAG+AGG - chr3_3:34932531-34932550 None:intergenic 40.0%
! CCTCTATCTTTTCAGCCATT+AGG + chr3_3:34932528-34932547 Msa0449950:intron 40.0%
TCAGCCATTAGGATATAAGG+TGG + chr3_3:34932539-34932558 Msa0449950:intron 40.0%
AATTCTAGTACTACCCTGCA+TGG - chr3_3:34932694-34932713 None:intergenic 40.0%
CACCGAAAATAACCAAACTG+TGG - chr3_3:34932809-34932828 None:intergenic 40.0%
AAAGTAGTTCCGGTTAGGAT+CGG + chr3_3:34933004-34933023 Msa0449950:intron 40.0%
GAACGGGTATAACAAAGGTT+TGG - chr3_3:34933048-34933067 None:intergenic 40.0%
GAACTGAACGGGTATAACAA+AGG - chr3_3:34933053-34933072 None:intergenic 40.0%
TTCCGTAAAACCGAACTGAA+CGG - chr3_3:34933065-34933084 None:intergenic 40.0%
ACGGAACTGTTGTAATGGTT+CGG + chr3_3:34933079-34933098 Msa0449950:intron 40.0%
!! TCAAAAGGAGTACTTAGGTC+TGG - chr3_3:34933290-34933309 None:intergenic 40.0%
TAGACTGTTCGTTAATGGGA+AGG - chr3_3:34933343-34933362 None:intergenic 40.0%
CACGATAGACAGATAGGTAA+TGG - chr3_3:34933372-34933391 None:intergenic 40.0%
CATTACCTATCTGTCTATCG+TGG + chr3_3:34933370-34933389 Msa0449950:intron 40.0%
! TCAAGATTTAGAGTACGCGT+AGG - chr3_3:34933433-34933452 None:intergenic 40.0%
CTCCATTATTTGGTACAGGA+AGG + chr3_3:34933723-34933742 Msa0449950:intron 40.0%
CACCTTCCTGTACCAAATAA+TGG - chr3_3:34933728-34933747 None:intergenic 40.0%
GGTTGCTAGCATTTACAAAG+AGG + chr3_3:34933754-34933773 Msa0449950:CDS 40.0%
GAGGGGAACAAAAATTCACT+CGG + chr3_3:34933773-34933792 Msa0449950:CDS 40.0%
TATGGTTCCTTGTATGTTGC+AGG + chr3_3:34934304-34934323 Msa0449950:intron 40.0%
GAAAAGTCCTGCAACATACA+AGG - chr3_3:34934314-34934333 None:intergenic 40.0%
TTGCAATCTAACAACGCTTC+AGG - chr3_3:34934389-34934408 None:intergenic 40.0%
TGCAAAACTGAACCATATGG+TGG + chr3_3:34934404-34934423 Msa0449950:CDS 40.0%
AAAACTGAACCATATGGTGG+TGG + chr3_3:34934407-34934426 Msa0449950:CDS 40.0%
! TTGATAGTTCCACCACCATA+TGG - chr3_3:34934419-34934438 None:intergenic 40.0%
TGGAACTATCAAGATCCCAA+TGG + chr3_3:34934427-34934446 Msa0449950:CDS 40.0%
ATGACCTGAAACCTGATCAA+GGG + chr3_3:34934682-34934701 Msa0449950:three_prime_UTR 40.0%
!! CAAGGGCATAGTCCTATTTT+AGG + chr3_3:34934699-34934718 Msa0449950:three_prime_UTR 40.0%
ATTCAACTAGTTGAACTGGC+CGG - chr3_3:34934791-34934810 None:intergenic 40.0%
GCCAGTTCAACTAGTTGAAT+CGG + chr3_3:34934791-34934810 Msa0449950:three_prime_UTR 40.0%
CCAGTTCAACTAGTTGAATC+GGG + chr3_3:34934792-34934811 Msa0449950:three_prime_UTR 40.0%
GGAGACAAGGTCATTTATGA+GGG - chr3_3:34934978-34934997 None:intergenic 40.0%
AGGAGACAAGGTCATTTATG+AGG - chr3_3:34934979-34934998 None:intergenic 40.0%
TGAGTGTTCCACTTGGAACT+TGG - chr3_3:34928246-34928265 None:intergenic 45.0%
AGTCTCAAGGCAACAGGAAA+TGG - chr3_3:34928330-34928349 None:intergenic 45.0%
GATTTCAGTCTCAAGGCAAC+AGG - chr3_3:34928336-34928355 None:intergenic 45.0%
GTTGAGGGATTTCAGTCTCA+AGG - chr3_3:34928343-34928362 None:intergenic 45.0%
GAAGAGGAAATGGAGGGAAA+AGG - chr3_3:34928453-34928472 None:intergenic 45.0%
GTGAGAGAAGAGGAAATGGA+GGG - chr3_3:34928459-34928478 None:intergenic 45.0%
AGTGAGAGAAGAGGAAATGG+AGG - chr3_3:34928460-34928479 None:intergenic 45.0%
GGTAGTGAGAGAAGAGGAAA+TGG - chr3_3:34928463-34928482 None:intergenic 45.0%
GAGAGAGAGAGAGAGATTAC+TGG - chr3_3:34928484-34928503 None:intergenic 45.0%
TCTCTCTCTCTCTCTCTTTG+TGG + chr3_3:34928536-34928555 Msa0449950:intron 45.0%
GGTCTCCTGTTCAATTCTTC+CGG - chr3_3:34928630-34928649 None:intergenic 45.0%
! AAGGAAGGTAGTTTGCCACA+TGG + chr3_3:34928755-34928774 Msa0449950:CDS 45.0%
AGTTGTGCTTGTTTCACCTC+AGG + chr3_3:34928823-34928842 Msa0449950:CDS 45.0%
TGAAGTAAAGTAGGGGTAGG+TGG + chr3_3:34929566-34929585 Msa0449950:intron 45.0%
GAAGTAAAGTAGGGGTAGGT+GGG + chr3_3:34929567-34929586 Msa0449950:intron 45.0%
CATAATCCTCTCATGGGTCA+TGG + chr3_3:34930182-34930201 Msa0449950:intron 45.0%
AAAAGCCTATGAAGCCTACC+AGG + chr3_3:34930576-34930595 Msa0449950:intron 45.0%
GCCAAGCCAGACTTTCAAAA+AGG + chr3_3:34931086-34931105 Msa0449950:intron 45.0%
GCCAGACTTTCAAAAAGGTC+AGG + chr3_3:34931091-34931110 Msa0449950:intron 45.0%
!! GCCTGACCTTTTTGAAAGTC+TGG - chr3_3:34931095-34931114 None:intergenic 45.0%
ACTTTCAAAAAGGTCAGGCC+CGG + chr3_3:34931096-34931115 Msa0449950:intron 45.0%
!! CTTGGCCTTTTACCTGTCAA+AGG - chr3_3:34931134-34931153 None:intergenic 45.0%
CTTTGACAGGTAAAAGGCCA+AGG + chr3_3:34931132-34931151 Msa0449950:intron 45.0%
TTGCTTAAATAGGCTAGGCC+TGG - chr3_3:34931179-34931198 None:intergenic 45.0%
GAGCCAGGCTTTGCTTAAAT+AGG - chr3_3:34931189-34931208 None:intergenic 45.0%
!!! AAGTTTTTTGGTAGTGGCCG+GGG - chr3_3:34931297-34931316 None:intergenic 45.0%
!!! CAAGTTTTTTGGTAGTGGCC+GGG - chr3_3:34931298-34931317 None:intergenic 45.0%
! ATCGGAGTTGGTTAAGTAGC+AGG + chr3_3:34931602-34931621 Msa0449950:intron 45.0%
TGGTAGATTCCAGGAAACAC+TGG + chr3_3:34932160-34932179 Msa0449950:intron 45.0%
GCTGTTGGACTACACTTAGT+TGG + chr3_3:34932211-34932230 Msa0449950:CDS 45.0%
GATACCAAACTAAAGCGAGC+TGG + chr3_3:34932564-34932583 Msa0449950:intron 45.0%
CAATCCAGCTCGCTTTAGTT+TGG - chr3_3:34932571-34932590 None:intergenic 45.0%
CAAACTAAAGCGAGCTGGAT+TGG + chr3_3:34932569-34932588 Msa0449950:intron 45.0%
TCGTGAACTATCCCACAGTT+TGG + chr3_3:34932794-34932813 Msa0449950:intron 45.0%
GGACTAAAGTAGTTCCGGTT+AGG + chr3_3:34932999-34933018 Msa0449950:intron 45.0%
TCTGTGTTTCCGATCCTAAC+CGG - chr3_3:34933016-34933035 None:intergenic 45.0%
TAGGATCGGAAACACAGAAC+AGG + chr3_3:34933018-34933037 Msa0449950:intron 45.0%
! ACCCGTTCAGTTCGGTTTTA+CGG + chr3_3:34933060-34933079 Msa0449950:intron 45.0%
TCCGTAAAACCGAACTGAAC+GGG - chr3_3:34933064-34933083 None:intergenic 45.0%
GAGTTCTGCTAGACCCTTAT+TGG + chr3_3:34933405-34933424 Msa0449950:intron 45.0%
TGGTACAGGAAGGTGAAAAG+AGG + chr3_3:34933733-34933752 Msa0449950:intron 45.0%
CAATCTAACAACGCTTCAGG+TGG - chr3_3:34934386-34934405 None:intergenic 45.0%
CATGACCTGAAACCTGATCA+AGG + chr3_3:34934681-34934700 Msa0449950:three_prime_UTR 45.0%
TATGCCCTTGATCAGGTTTC+AGG - chr3_3:34934689-34934708 None:intergenic 45.0%
ATAGGACTATGCCCTTGATC+AGG - chr3_3:34934696-34934715 None:intergenic 45.0%
CCCGATTCAACTAGTTGAAC+TGG - chr3_3:34934795-34934814 None:intergenic 45.0%
CAACTAGTTGAATCGGGAAC+TGG + chr3_3:34934798-34934817 Msa0449950:three_prime_UTR 45.0%
ACACTTCAGTCTGGTTGAAC+TGG + chr3_3:34934850-34934869 Msa0449950:three_prime_UTR 45.0%
GGTTTGTACCACGATTGAAG+TGG + chr3_3:34934871-34934890 Msa0449950:three_prime_UTR 45.0%
!!! TTTTTTTTTTATTTTGTATT+TGG + chr3_3:34930712-34930731 Msa0449950:intron 5.0%
!!! TTTTTTTTTATTTTGTATTT+GGG + chr3_3:34930713-34930732 Msa0449950:intron 5.0%
!!! AATAATTATTTTCATAATAT+TGG - chr3_3:34931869-34931888 None:intergenic 5.0%
AGAGTGGTGAGTGTTCCACT+TGG - chr3_3:34928253-34928272 None:intergenic 50.0%
ACACTCACCACTCTCTGCAT+CGG + chr3_3:34928259-34928278 Msa0449950:CDS 50.0%
CACTCTCTGCATCGGATAGA+CGG + chr3_3:34928267-34928286 Msa0449950:CDS 50.0%
ATGGAGGGAAAAGGTGAGGT+GGG - chr3_3:34928444-34928463 None:intergenic 50.0%
AATGGAGGGAAAAGGTGAGG+TGG - chr3_3:34928445-34928464 None:intergenic 50.0%
GGAAATGGAGGGAAAAGGTG+AGG - chr3_3:34928448-34928467 None:intergenic 50.0%
TGCCACCGGAAGAATTGAAC+AGG + chr3_3:34928622-34928641 Msa0449950:intron 50.0%
CTCCTGTTCAATTCTTCCGG+TGG - chr3_3:34928627-34928646 None:intergenic 50.0%
! GGTAGTTTGCCACATGGTGT+TGG + chr3_3:34928761-34928780 Msa0449950:CDS 50.0%
! TTTGCCACATGGTGTTGGAG+AGG + chr3_3:34928766-34928785 Msa0449950:CDS 50.0%
! TTGCCACATGGTGTTGGAGA+GGG + chr3_3:34928767-34928786 Msa0449950:CDS 50.0%
TATTGAGAGGGCGGAGAAAG+AGG + chr3_3:34930304-34930323 Msa0449950:intron 50.0%
ATTGAGAGGGCGGAGAAAGA+GGG + chr3_3:34930305-34930324 Msa0449950:intron 50.0%
TCCTTGAGTCCTCGTGAGTA+GGG + chr3_3:34930409-34930428 Msa0449950:intron 50.0%
TATTCCCATCCCTACTCACG+AGG - chr3_3:34930421-34930440 None:intergenic 50.0%
TCGTGAGTAGGGATGGGAAT+AGG + chr3_3:34930420-34930439 Msa0449950:intron 50.0%
! CTTTTAGTAGGCCGAGCCAT+AGG - chr3_3:34930465-34930484 None:intergenic 50.0%
CAGGTAAAAGGCCAAGGCTT+AGG + chr3_3:34931138-34931157 Msa0449950:intron 50.0%
TGAGCTAAGCTCACGAGTAG+GGG - chr3_3:34931229-34931248 None:intergenic 50.0%
CTGAGCTAAGCTCACGAGTA+GGG - chr3_3:34931230-34931249 None:intergenic 50.0%
ACTGAGCTAAGCTCACGAGT+AGG - chr3_3:34931231-34931250 None:intergenic 50.0%
ACTCGTGAGCTTAGCTCAGT+TGG + chr3_3:34931231-34931250 Msa0449950:intron 50.0%
TGAGCTTAGCTCAGTTGGCT+TGG + chr3_3:34931236-34931255 Msa0449950:intron 50.0%
AGCAGGAACTGCATTTGAGC+TGG + chr3_3:34931619-34931638 Msa0449950:intron 50.0%
AGTGGGGTTAGAGCAAGTCT+TGG + chr3_3:34931981-34932000 Msa0449950:intron 50.0%
ACATGTGCAGCATCAGCTGT+TGG + chr3_3:34932196-34932215 Msa0449950:CDS 50.0%
TGGACTACTGGACGTATCCT+TGG + chr3_3:34932589-34932608 Msa0449950:intron 50.0%
GAAGGTGACTAACTCGATGG+AGG - chr3_3:34933325-34933344 None:intergenic 50.0%
TGGGAAGGTGACTAACTCGA+TGG - chr3_3:34933328-34933347 None:intergenic 50.0%
GTACGCGTAGGAGCCAATAA+GGG - chr3_3:34933421-34933440 None:intergenic 50.0%
AGTACGCGTAGGAGCCAATA+AGG - chr3_3:34933422-34933441 None:intergenic 50.0%
ACTAGTTGAACTGGCCGGTT+CGG - chr3_3:34934786-34934805 None:intergenic 50.0%
CGGTTTGACCACTTCAATCG+TGG - chr3_3:34934882-34934901 None:intergenic 50.0%
CGATTGAAGTGGTCAAACCG+CGG + chr3_3:34934882-34934901 Msa0449950:three_prime_UTR 50.0%
CGTCTATCCGATGCAGAGAG+TGG - chr3_3:34928269-34928288 None:intergenic 55.0%
GCAGCAGCATTGTGAAGCGA+TGG + chr3_3:34928299-34928318 Msa0449950:CDS 55.0%
! TGCTGCTGCTGCTAGGTTGA+GGG - chr3_3:34928358-34928377 None:intergenic 55.0%
TAGCCCACCGAAATTGCCAC+CGG + chr3_3:34928608-34928627 Msa0449950:intron 55.0%
CTTCCGGTGGCAATTTCGGT+GGG - chr3_3:34928614-34928633 None:intergenic 55.0%
TCTTCCGGTGGCAATTTCGG+TGG - chr3_3:34928615-34928634 None:intergenic 55.0%
! TGCCACATGGTGTTGGAGAG+GGG + chr3_3:34928768-34928787 Msa0449950:CDS 55.0%
ATCCCCTCTCCAACACCATG+TGG - chr3_3:34928773-34928792 None:intergenic 55.0%
GCTTACTCACTCACCCAGGA+AGG - chr3_3:34928948-34928967 None:intergenic 55.0%
ACACACCCATGACCCATGAG+AGG - chr3_3:34930191-34930210 None:intergenic 55.0%
CTCCTTGAGTCCTCGTGAGT+AGG + chr3_3:34930408-34930427 Msa0449950:intron 55.0%
TCCCTACTCACGAGGACTCA+AGG - chr3_3:34930413-34930432 None:intergenic 55.0%
TGAGTCCTCGTGAGTAGGGA+TGG + chr3_3:34930413-34930432 Msa0449950:intron 55.0%
GAGTCCTCGTGAGTAGGGAT+GGG + chr3_3:34930414-34930433 Msa0449950:intron 55.0%
AGTAGGGATGGGAATAGGCC+AGG + chr3_3:34930425-34930444 Msa0449950:intron 55.0%
TTAAACGAGCTAGGCCGAGC+CGG - chr3_3:34930489-34930508 None:intergenic 55.0%
TACTCATATACGGGTCGGCC+TGG - chr3_3:34930597-34930616 None:intergenic 55.0%
CTAAGCTCACGAGTAGGGGT+GGG - chr3_3:34931225-34931244 None:intergenic 55.0%
GCAATGCAGCCAGTGTTTCC+TGG - chr3_3:34932172-34932191 None:intergenic 55.0%
! AGCGAGCTGGATTGGACTAC+TGG + chr3_3:34932577-34932596 Msa0449950:intron 55.0%
GAACTGGCGAGTTCGTTGGT+CGG + chr3_3:34934814-34934833 Msa0449950:three_prime_UTR 55.0%
CTGCTGCTGCTGCTAGGTTG+AGG - chr3_3:34928359-34928378 None:intergenic 60.0%
GGTGGCTTACTCACTCACCC+AGG - chr3_3:34928952-34928971 None:intergenic 60.0%
GGCTCGGCCTACTAAAAGCC+CGG + chr3_3:34930467-34930486 Msa0449950:intron 60.0%
GGCCTACTAAAAGCCCGGCT+CGG + chr3_3:34930472-34930491 Msa0449950:intron 60.0%
TAAACGAGCTAGGCCGAGCC+GGG - chr3_3:34930488-34930507 None:intergenic 60.0%
GTCGGCCTGGTAGGCTTCAT+AGG - chr3_3:34930584-34930603 None:intergenic 60.0%
CATATACGGGTCGGCCTGGT+AGG - chr3_3:34930593-34930612 None:intergenic 60.0%
AGTAGGGGTGGGAATGAGCC+GGG - chr3_3:34931214-34931233 None:intergenic 60.0%
GAGTAGGGGTGGGAATGAGC+CGG - chr3_3:34931215-34931234 None:intergenic 60.0%
GCTAAGCTCACGAGTAGGGG+TGG - chr3_3:34931226-34931245 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr3_3:34931277-34931296 Msa0449950:intron 60.0%
TCGGGAACTGGCGAGTTCGT+TGG + chr3_3:34934810-34934829 Msa0449950:three_prime_UTR 60.0%
CTGCTGCTGCTGCTGCTGCT+AGG - chr3_3:34928365-34928384 None:intergenic 65.0%
! GGCCGAGCCGGGCTTTTAGT+AGG - chr3_3:34930477-34930496 None:intergenic 65.0%
!! AAGCAAAGCCTGGCTCGGCC+CGG + chr3_3:34931193-34931212 Msa0449950:intron 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr3_3:34931285-34931304 None:intergenic 65.0%
AATAGGCCAGGCCGCCCGTC+AGG + chr3_3:34930437-34930456 Msa0449950:intron 70.0%
ATAGGCCAGGCCGCCCGTCA+GGG + chr3_3:34930438-34930457 Msa0449950:intron 70.0%
AGCCATAGGCCCCTGACGGG+CGG - chr3_3:34930451-34930470 None:intergenic 70.0%
CCGAGCCATAGGCCCCTGAC+GGG - chr3_3:34930454-34930473 None:intergenic 70.0%
CCCGTCAGGGGCCTATGGCT+CGG + chr3_3:34930451-34930470 Msa0449950:intron 70.0%
GCCGAGCCATAGGCCCCTGA+CGG - chr3_3:34930455-34930474 None:intergenic 70.0%
TAGGCCAGGCCGCCCGTCAG+GGG + chr3_3:34930439-34930458 Msa0449950:intron 75.0%
GGAATGAGCCGGGCCGAGCC+AGG - chr3_3:34931204-34931223 None:intergenic 75.0%
!! TAGGCCCCTGACGGGCGGCC+TGG - chr3_3:34930446-34930465 None:intergenic 80.0%
! GGCCGCCCGTCAGGGGCCTA+TGG + chr3_3:34930446-34930465 Msa0449950:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 34928237 34935009 34928237 ID=Msa0449950;Name=Msa0449950
chr3_3 mRNA 34928237 34935009 34928237 ID=Msa0449950-mRNA-1;Parent=Msa0449950;Name=Msa0449950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.8|1|1|1|5|402|260
chr3_3 exon 34928237 34928483 34928237 ID=Msa0449950-mRNA-1:exon:6217;Parent=Msa0449950-mRNA-1
chr3_3 exon 34928714 34928844 34928714 ID=Msa0449950-mRNA-1:exon:6218;Parent=Msa0449950-mRNA-1
chr3_3 exon 34932166 34932234 34932166 ID=Msa0449950-mRNA-1:exon:6219;Parent=Msa0449950-mRNA-1
chr3_3 exon 34933741 34933794 34933741 ID=Msa0449950-mRNA-1:exon:6220;Parent=Msa0449950-mRNA-1
chr3_3 exon 34934326 34935009 34934326 ID=Msa0449950-mRNA-1:exon:6221;Parent=Msa0449950-mRNA-1
chr3_3 CDS 34928237 34928483 34928237 ID=Msa0449950-mRNA-1:cds;Parent=Msa0449950-mRNA-1
chr3_3 CDS 34928714 34928844 34928714 ID=Msa0449950-mRNA-1:cds;Parent=Msa0449950-mRNA-1
chr3_3 CDS 34932166 34932234 34932166 ID=Msa0449950-mRNA-1:cds;Parent=Msa0449950-mRNA-1
chr3_3 CDS 34933741 34933794 34933741 ID=Msa0449950-mRNA-1:cds;Parent=Msa0449950-mRNA-1
chr3_3 CDS 34934326 34934607 34934326 ID=Msa0449950-mRNA-1:cds;Parent=Msa0449950-mRNA-1
chr3_3 three_prime_UTR 34934608 34935009 34934608 ID=Msa0449950-mRNA-1:three_prime_utr;Parent=Msa0449950-mRNA-1
Gene Sequence

>Msa0449950

ATGCTTCCAAGTTCCAAGTGGAACACTCACCACTCTCTGCATCGGATAGACGGAAAGAAGCAGCAGCAGCATTGTGAAGCGATGGACATACCATTTCCTGTTGCCTTGAGACTGAAATCCCTCAACCTAGCAGCAGCAGCAGCAGCAGCAAACCCTTTTCATTTTCGATCCAAACTCTCTCTTTTTCGTCAACTTCACTTCAAACCCACCTCACCTTTTCCCTCCATTTCCTCTTCTCTCACTACCAATGGTTCTGTTGCTGCTGCTGCTGCTGAGAATGAGATAAAGAAGGAAGGTAGTTTGCCACATGGTGTTGGAGAGGGGATTAATGAAGCATCACATTCTAAGATTCTTCAAGTTGTGCTTGTTTCACCTCAGATTCCAGGAAACACTGGCTGCATTGCTAGAACATGTGCAGCATCAGCTGTTGGACTACACTTAGTTGGGGAAGGTGAAAAGAGGTTGCTAGCATTTACAAAGAGGGGAACAAAAATTCACTCGGACTTTTCATACAGAAAAGGCGATTATCTTTTATTTGGTGCTGAAACTACTGGTCTTCCACCTGAAGCGTTGTTAGATTGCAAAACTGAACCATATGGTGGTGGAACTATCAAGATCCCAATGGTTGAAACATATGTCAGGTGTTTGAATCTATCAGTAAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAACTATGAATCACTTCAGATACCTTCAGAAACATGTATTGATACTGAGGAGGAATCATTAATTACTGAAGACATTTTTGGCTGA

Protein sequence

>Msa0449950

MLPSSKWNTHHSLHRIDGKKQQQHCEAMDIPFPVALRLKSLNLAAAAAAANPFHFRSKLSLFRQLHFKPTSPFPSISSSLTTNGSVAAAAAENEIKKEGSLPHGVGEGINEASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPYGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESLITEDIFG*