AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028860 MtrunA17_Chr7g0249221 94.737 418 1 1 1 397 1 418 0.0 807
Msa1028860 MtrunA17_Chr4g0066941 41.805 421 163 15 27 374 43 454 3.84e-81 258
Msa1028860 MtrunA17_Chr1g0195891 45.201 323 141 9 9 304 30 343 6.87e-80 249
Msa1028860 MtrunA17_Chr1g0195891 52.632 76 36 0 254 329 91 166 6.40e-19 87.4
Msa1028860 MtrunA17_Chr5g0438891 41.298 339 146 10 23 336 32 342 1.79e-79 250
Msa1028860 MtrunA17_Chr2g0286151 39.109 404 190 11 8 367 26 417 6.94e-77 246
Msa1028860 MtrunA17_Chr3g0116431 35.714 364 164 7 4 332 150 478 3.70e-66 218
Msa1028860 MtrunA17_Chr3g0116431 42.697 89 36 2 254 334 171 252 6.91e-14 73.2
Msa1028860 MtrunA17_Chr4g0058011 35.829 374 171 13 27 363 231 572 1.21e-61 208
Msa1028860 MtrunA17_Chr8g0356241 31.378 392 173 13 6 329 111 474 5.59e-44 159
Msa1028860 MtrunA17_Chr8g0356241 49.367 79 35 2 254 332 190 263 2.28e-17 84.0
Msa1028860 MtrunA17_Chr8g0356241 44.000 75 38 1 62 132 406 480 1.20e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028860 AT3G02830.1 57.895 418 104 10 8 395 18 393 3.79e-158 451
Msa1028860 AT3G02830.2 57.831 415 103 10 11 395 1 373 1.94e-156 446
Msa1028860 AT5G16540.1 49.537 432 121 12 1 395 1 372 2.35e-132 384
Msa1028860 AT5G16540.3 50.852 411 116 11 11 395 1 351 1.49e-130 379
Msa1028860 AT5G16540.2 48.148 432 120 13 1 395 1 365 9.16e-125 365
Msa1028860 AT2G47850.1 47.185 373 150 10 2 345 23 377 2.17e-105 319
Msa1028860 AT2G47850.3 47.185 373 150 10 2 345 23 377 2.17e-105 319
Msa1028860 AT5G16540.4 51.097 319 81 8 11 304 1 269 2.94e-102 304
Msa1028860 AT5G16540.4 42.500 120 61 2 254 370 63 177 2.54e-21 93.2
Msa1028860 AT5G16540.4 41.053 95 49 2 254 342 18 111 4.14e-16 78.2
Msa1028860 AT5G18550.3 41.840 337 147 9 27 328 16 338 1.69e-83 261
Msa1028860 AT5G18550.3 30.556 144 63 5 62 171 276 416 5.61e-12 67.4
Msa1028860 AT5G18550.1 41.840 337 147 9 27 328 48 370 2.68e-83 262
Msa1028860 AT5G18550.1 30.556 144 63 5 62 171 308 448 5.36e-12 67.8
Msa1028860 AT5G18550.4 41.840 337 147 9 27 328 48 370 3.92e-83 261
Msa1028860 AT5G18550.4 30.556 144 63 5 62 171 308 448 6.50e-12 67.4
Msa1028860 AT3G06410.1 40.997 361 155 10 11 328 33 378 2.75e-78 249
Msa1028860 AT2G47850.2 41.803 366 142 12 8 345 29 351 3.19e-77 246
Msa1028860 AT5G18550.2 39.466 337 142 9 27 328 48 357 9.91e-76 242
Msa1028860 AT3G48440.1 40.805 348 143 11 19 330 99 419 3.05e-75 241
Msa1028860 AT3G48440.1 34.328 134 40 2 244 329 97 230 3.24e-16 80.5
Msa1028860 AT1G04990.1 39.244 344 154 8 8 330 25 334 2.81e-74 237
Msa1028860 AT1G04990.6 39.244 344 154 8 8 330 25 334 2.81e-74 237
Msa1028860 AT1G04990.2 39.244 344 154 8 8 330 25 334 2.81e-74 237
Msa1028860 AT2G47850.4 48.864 264 115 8 90 345 4 255 2.16e-73 233
Msa1028860 AT2G47850.4 42.000 100 34 1 27 126 164 239 3.63e-20 91.3
Msa1028860 AT2G32930.2 34.434 424 207 13 8 392 22 413 6.52e-66 217
Msa1028860 AT1G04990.5 37.209 344 141 9 8 330 25 314 9.97e-66 214
Msa1028860 AT2G32930.3 35.167 418 200 13 14 392 1 386 1.88e-65 215
Msa1028860 AT5G63260.1 37.572 346 167 7 27 345 98 421 3.71e-65 214
Msa1028860 AT5G63260.1 35.484 124 33 2 253 329 97 220 1.74e-15 78.2
Msa1028860 AT2G32930.1 34.286 420 209 13 8 392 22 409 3.83e-65 214
Msa1028860 AT5G63260.2 35.912 362 167 7 27 345 98 437 1.30e-62 208
Msa1028860 AT1G04990.3 40.590 271 125 6 62 330 17 253 7.13e-59 194
Msa1028860 AT1G04990.3 45.714 70 37 1 260 329 12 80 1.48e-14 74.3
Msa1028860 AT1G04990.3 26.199 271 140 10 38 283 17 252 2.09e-13 71.2
Msa1028860 AT1G04990.4 38.007 271 112 7 62 330 17 233 3.27e-50 171
Msa1028860 AT1G04990.4 45.714 70 37 1 260 329 12 80 8.66e-15 75.1
Msa1028860 AT3G12680.1 31.339 351 171 10 27 329 171 499 3.09e-47 169
Msa1028860 AT3G12680.1 31.217 189 46 4 20 126 260 446 1.68e-21 96.7
Msa1028860 AT3G12680.1 51.899 79 35 1 254 332 222 297 1.35e-19 90.9
Msa1028860 AT3G12680.1 32.778 180 79 5 247 394 258 427 2.23e-19 90.5
Msa1028860 AT3G12680.1 33.333 135 59 2 5 132 395 505 1.75e-18 87.8
Msa1028860 AT3G12680.1 42.857 84 39 3 253 329 170 251 2.83e-12 68.6
Msa1028860 AT1G48195.1 53.846 78 36 0 251 328 3 80 1.36e-25 99.4
Msa1028860 AT1G48195.1 39.423 104 39 2 22 125 1 80 2.98e-15 70.9

Find 178 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGGTCAATGCAAATT+TGG 0.130342 7_1:-62057567 Msa1028860:CDS
AAAACAGGAACTTGCAAATT+TGG 0.136623 7_1:-62057991 Msa1028860:CDS
CGGTATGGCATATGCAAATT+TGG 0.215054 7_1:-62055216 Msa1028860:CDS
GCAACCCCAGCCTTGTCTTT+AGG 0.238635 7_1:+62057946 None:intergenic
AAAGACAAGGCTGGGGTTGC+TGG 0.272337 7_1:-62057943 Msa1028860:CDS
GGGGCCTTGCCACCTTGGAC+TGG 0.285983 7_1:+62057392 None:intergenic
ACTCCTTGAGGTAGAATTAA+AGG 0.289469 7_1:+62057357 None:intergenic
AGAACCGGCCTTTGTAGATT+TGG 0.298865 7_1:-62060311 Msa1028860:CDS
TTATTCTTTGTTCTCATTTG+TGG 0.315569 7_1:-62061570 Msa1028860:five_prime_UTR
CAAGGAGTGGTTTCAGTGCC+TGG 0.319809 7_1:-62057342 Msa1028860:CDS
TTCTCTCTTGGTTGAGTTGA+GGG 0.324527 7_1:-62061416 Msa1028860:five_prime_UTR
TCATAAATATTTGTCACATT+TGG 0.326359 7_1:-62054755 Msa1028860:three_prime_UTR
CCTGATTCCATTGTTTCACT+TGG 0.338494 7_1:+62060380 None:intergenic
TGAATTGATTTCCCCATTGC+TGG 0.341453 7_1:-62054894 Msa1028860:three_prime_UTR
TTCATGTAGAATTGGCATTC+AGG 0.344518 7_1:+62056470 None:intergenic
TTCATTATTCTAGGGTCAAA+TGG 0.349387 7_1:-62056669 Msa1028860:intron
CCATCCTCAACCAAGTAATA+TGG 0.367721 7_1:-62057526 Msa1028860:CDS
GTTGGCAAATCCAGTCGTTC+TGG 0.368904 7_1:-62054805 Msa1028860:three_prime_UTR
CCCCAGTCTTCATGTAGAAT+TGG 0.370124 7_1:+62056462 None:intergenic
CACAATAATAAATACTTCAT+TGG 0.372039 7_1:+62054469 None:intergenic
AGAAACAGTTATAGATAGAT+TGG 0.373070 7_1:-62061631 Msa1028860:five_prime_UTR
GATGGTCAAACTTGCAGCTT+GGG 0.376214 7_1:+62055193 None:intergenic
GGGCCTTGCCACCTTGGACT+GGG 0.379660 7_1:+62057393 None:intergenic
AGGTGATGCAGATACATTAT+AGG 0.382033 7_1:+62055155 None:intergenic
GAACTGGTCAATGCAAATTT+GGG 0.387377 7_1:-62057566 Msa1028860:CDS
ATAATGTTGTCTCTTGGAAA+TGG 0.390974 7_1:-62054965 Msa1028860:exon
TGTGCTTATTATTTAAGAAC+TGG 0.391344 7_1:-62057582 Msa1028860:CDS
TTTGACATGAACTCTGTGTT+TGG 0.391786 7_1:+62054857 None:intergenic
TGCCAACTGCATTCAATAGT+AGG 0.395511 7_1:+62054821 None:intergenic
GTATATTCTCAATACCGTTC+TGG 0.396199 7_1:-62056557 Msa1028860:CDS
GACTGGACAGTAGGATAAAC+AGG 0.398708 7_1:+62057483 None:intergenic
CGTTAAAGAAAAGGATTTGC+TGG 0.401745 7_1:+62054609 None:intergenic
GGTTTAATCATCCTCCTAAC+AGG 0.403742 7_1:-62060277 Msa1028860:CDS
GTTCGTACCAGCTTCCTGTT+AGG 0.404770 7_1:+62060263 None:intergenic
AGGGGACTCAAAACACAATC+AGG 0.404981 7_1:+62056380 None:intergenic
CTCTGTACATCTCCAGCAAT+GGG 0.406575 7_1:+62054882 None:intergenic
AAGACTGGGGATTGCAAGTT+CGG 0.406993 7_1:-62056449 Msa1028860:CDS
TTACAGTACTATCTGAAAAC+AGG 0.407139 7_1:-62058006 Msa1028860:intron
ATATATAATAAATCAATGTT+TGG 0.409540 7_1:-62054648 Msa1028860:three_prime_UTR
AATTGGCATTCAGGCTGATC+AGG 0.416142 7_1:+62056479 None:intergenic
TGCAATGGCAAGCCAACATT+AGG 0.418386 7_1:-62054542 Msa1028860:three_prime_UTR
CAACTGTTTCGTTAAAGAAA+AGG 0.419546 7_1:+62054600 None:intergenic
CACTTTGTGTATTCTATTCG+CGG 0.422525 7_1:-62055236 Msa1028860:CDS
CTTGGTTGAGTTGAGGGTGG+AGG 0.426121 7_1:-62061410 Msa1028860:five_prime_UTR
GAGACTAGACCGAATCCTTC+CGG 0.432361 7_1:-62055012 Msa1028860:CDS
TCAGGCTGATCAGGTCTCTC+TGG 0.434727 7_1:+62056488 None:intergenic
ATCATCCTAAAGACAAGGCT+GGG 0.436765 7_1:-62057951 Msa1028860:CDS
ATGCGGCAGGAATTACAAAT+TGG 0.438347 7_1:-62057434 Msa1028860:CDS
CTTGAGGGGCCTTGCCACCT+TGG 0.438502 7_1:+62057387 None:intergenic
GCCGCAGGACGGCGTCTGCT+AGG 0.441580 7_1:-62055123 Msa1028860:CDS
AATGGAATCAGGACCGTATC+CGG 0.442898 7_1:-62060369 Msa1028860:CDS
CGTCCTGCGGCTTCAGCTAA+AGG 0.445120 7_1:+62055135 None:intergenic
TGTGTATTCTATTCGCGGTA+TGG 0.447990 7_1:-62055231 Msa1028860:CDS
TGCAAAGCATAGAATCCTAC+TGG 0.461939 7_1:+62056527 None:intergenic
TTGAGGGTGGAGGTTGATCT+CGG 0.463280 7_1:-62061400 Msa1028860:five_prime_UTR
TATATGCCGCATCGCATCAA+TGG 0.463698 7_1:-62061273 Msa1028860:exon
ATTGGAAGTACCATATTACT+TGG 0.463756 7_1:+62057516 None:intergenic
AAGGATATTGATCCTAATGT+TGG 0.464076 7_1:+62054530 None:intergenic
TGCCAATTCTACATGAAGAC+TGG 0.464264 7_1:-62056464 Msa1028860:CDS
TCATCATCACCGGAAGGATT+CGG 0.466357 7_1:+62055003 None:intergenic
CCAAGTGAAACAATGGAATC+AGG 0.466799 7_1:-62060380 Msa1028860:CDS
TGTTCATATTACATAAGAAC+CGG 0.466818 7_1:-62060326 Msa1028860:CDS
CTTATGTAATATGAACAATC+TGG 0.467160 7_1:+62060332 None:intergenic
TCATTTCTCATTGTTTGTTG+TGG 0.469765 7_1:+62056635 None:intergenic
TAATGTTGTCTCTTGGAAAT+GGG 0.470925 7_1:-62054964 Msa1028860:three_prime_UTR
TCATTATTCTAGGGTCAAAT+GGG 0.471117 7_1:-62056668 Msa1028860:intron
TATGAACAATCTGGTTCTCC+AGG 0.476295 7_1:+62060341 None:intergenic
TCTCCAGGATGCTCCGGATA+CGG 0.476462 7_1:+62060356 None:intergenic
TCTGATAATGAAAGCCTCCT+TGG 0.480995 7_1:+62055033 None:intergenic
CCAGAAAATGCAGGACTCCC+AGG 0.485002 7_1:-62056581 Msa1028860:CDS
ATTAAAGGTGCATAACTTGA+GGG 0.486909 7_1:+62057372 None:intergenic
TTCTTTGTTCTCATTTGTGG+AGG 0.495948 7_1:-62061567 Msa1028860:five_prime_UTR
CATCATCCTAAAGACAAGGC+TGG 0.496258 7_1:-62057952 Msa1028860:CDS
AAGGAGTGGTTTCAGTGCCT+GGG 0.496753 7_1:-62057341 Msa1028860:CDS
TTTCTCTCTTGGTTGAGTTG+AGG 0.497025 7_1:-62061417 Msa1028860:five_prime_UTR
ATGAGATGAGGTTGGTTGGT+TGG 0.498789 7_1:-62061596 Msa1028860:five_prime_UTR
GCAAATTTGGAGCCACATGC+AGG 0.499420 7_1:-62057978 Msa1028860:CDS
ATGAGAAATGATCAAACCTA+TGG 0.501705 7_1:-62056623 Msa1028860:CDS
GGATGGTCAAACTTGCAGCT+TGG 0.504043 7_1:+62055192 None:intergenic
CGGTATTGAGAATATACCCC+TGG 0.505547 7_1:+62056563 None:intergenic
GACTGCTGACCTGCTGTAGT+TGG 0.505631 7_1:+62057459 None:intergenic
TAAACAGGAGAACCTCTCAT+TGG 0.506558 7_1:+62057498 None:intergenic
TCTGGTTCTCCAGGATGCTC+CGG 0.509312 7_1:+62060350 None:intergenic
TGGATAGCCTAAAATATTCA+AGG 0.511388 7_1:+62057912 None:intergenic
AGTTTGTGAGTGTGACAGAC+AGG 0.516203 7_1:-62061323 Msa1028860:five_prime_UTR
GGACCGTATCCGGAGCATCC+TGG 0.519002 7_1:-62060359 Msa1028860:CDS
AGGATTCTATGCTTTGCAAA+GGG 0.522548 7_1:-62056522 Msa1028860:CDS
TCAGAAGGACTTGTTGAGTC+GGG 0.523918 7_1:-62055066 Msa1028860:CDS
TGCTCCAAATCTACAAAGGC+CGG 0.524252 7_1:+62060307 None:intergenic
TCTCTTGGTTGAGTTGAGGG+TGG 0.525048 7_1:-62061413 Msa1028860:five_prime_UTR
AGTACCATATTACTTGGTTG+AGG 0.526229 7_1:+62057522 None:intergenic
AACCTACTATTGAATGCAGT+TGG 0.529624 7_1:-62054823 Msa1028860:three_prime_UTR
ATAGATAGATGAGATGAGGT+TGG 0.533233 7_1:-62061604 Msa1028860:five_prime_UTR
TGAGGGATAATGTTGTCTCT+TGG 0.536943 7_1:-62054971 Msa1028860:exon
AACTGAAGAAATGTTCACAT+TGG 0.537104 7_1:+62054725 None:intergenic
CAGGACGCAAAGGAAGGCCA+AGG 0.538208 7_1:+62056360 None:intergenic
TGTATAGAAATTTGTTGCAA+TGG 0.538257 7_1:-62054557 Msa1028860:three_prime_UTR
CCATATTACTTGGTTGAGGA+TGG 0.539028 7_1:+62057526 None:intergenic
CGTCTGCTAGGTTCTTCGTC+AGG 0.539323 7_1:-62055111 Msa1028860:CDS
AAAAGAGAAGAGAACCTTGA+GGG 0.541426 7_1:+62061237 None:intergenic
GCCAATTCTACATGAAGACT+GGG 0.541639 7_1:-62056463 Msa1028860:CDS
TGCAAGTTTGACCATCCAAT+GGG 0.542643 7_1:-62055186 Msa1028860:CDS
CGTACCAGCTTCCTGTTAGG+AGG 0.546788 7_1:+62060266 None:intergenic
AGGTGAAGATTCCCATTGGA+TGG 0.548300 7_1:+62055175 None:intergenic
GACCTGCTGTAGTTGGAGAC+TGG 0.551761 7_1:+62057466 None:intergenic
CGTTCTGGCTCTGTTCCAGT+AGG 0.552611 7_1:-62056542 Msa1028860:CDS
ATCATCAATGTCATCATCAC+CGG 0.554108 7_1:+62054993 None:intergenic
GGTCAGCAGTCATATGCGGC+AGG 0.561665 7_1:-62057447 Msa1028860:CDS
CAGAAAATGCAGGACTCCCA+GGG 0.561675 7_1:-62056580 Msa1028860:CDS
TCATCCTCCTAACAGGAAGC+TGG 0.561961 7_1:-62060270 Msa1028860:intron
ATCAGAAGGACTTGTTGAGT+CGG 0.563006 7_1:-62055067 Msa1028860:CDS
TAGGATTCTATGCTTTGCAA+AGG 0.563647 7_1:-62056523 Msa1028860:CDS
ACTCTGTACATCTCCAGCAA+TGG 0.565187 7_1:+62054881 None:intergenic
GCATTAAGTTTATCATCAGA+AGG 0.566420 7_1:-62055081 Msa1028860:CDS
AGCATGAAATCCAGAACGAC+TGG 0.570834 7_1:+62054795 None:intergenic
CTTGAGGCCAAGTGAAACAA+TGG 0.571072 7_1:-62060387 Msa1028860:CDS
CTCAAAACACAATCAGGGGC+AGG 0.571149 7_1:+62056386 None:intergenic
TTTAATTCTACCTCAAGGAG+TGG 0.571343 7_1:-62057355 Msa1028860:CDS
TGAGGGTGGAGGTTGATCTC+GGG 0.573732 7_1:-62061399 Msa1028860:five_prime_UTR
CGCGAATAGAATACACAAAG+TGG 0.573840 7_1:+62055237 None:intergenic
GCACCTTTAATTCTACCTCA+AGG 0.574609 7_1:-62057360 Msa1028860:CDS
CTGCAAGTTTGACCATCCAA+TGG 0.575545 7_1:-62055187 Msa1028860:CDS
GTCCAGTCTCCAACTACAGC+AGG 0.575929 7_1:-62057468 Msa1028860:CDS
GAATCGTCCTCTCACGTGGA+TGG 0.576252 7_1:+62056408 None:intergenic
AATTAAAGGTGCATAACTTG+AGG 0.578502 7_1:+62057371 None:intergenic
ATAGATGAGATGAGGTTGGT+TGG 0.578888 7_1:-62061600 Msa1028860:five_prime_UTR
TCACCTTTAGCTGAAGCCGC+AGG 0.584776 7_1:-62055138 Msa1028860:CDS
GGGGACTCAAAACACAATCA+GGG 0.586867 7_1:+62056381 None:intergenic
TTATAGGTGAAGATTCCCAT+TGG 0.587312 7_1:+62055171 None:intergenic
ATTCCCAGTCCAAGGTGGCA+AGG 0.587489 7_1:-62057396 Msa1028860:CDS
GAGAAGAGAACCTTGAGGGA+TGG 0.594361 7_1:+62061241 None:intergenic
CAAGGTGATCCAGAAAATGC+AGG 0.595566 7_1:-62056590 Msa1028860:CDS
AGGACGCAAAGGAAGGCCAA+GGG 0.598969 7_1:+62056361 None:intergenic
GTAGTTGGAGACTGGACAGT+AGG 0.599936 7_1:+62057474 None:intergenic
AAGAGTGAGTTAACAAAACG+TGG 0.605140 7_1:-62061353 Msa1028860:five_prime_UTR
CATCATATATTCCCAGTCCA+AGG 0.605376 7_1:-62057404 Msa1028860:CDS
ATAGATAGATAGATGAGATG+AGG 0.607511 7_1:-62061608 Msa1028860:five_prime_UTR
AACTCACAGGACGCAAAGGA+AGG 0.607839 7_1:+62056354 None:intergenic
CAATGTGGCAAATGAGCTTG+AGG 0.610902 7_1:-62060403 Msa1028860:CDS
GAATACGATGCCATCCCTCA+AGG 0.613701 7_1:-62061251 Msa1028860:intron
GCAGGAATCGTCCTCTCACG+TGG 0.617223 7_1:+62056404 None:intergenic
ACCTTGGTGAGAAGTTCCAT+AGG 0.618037 7_1:+62056607 None:intergenic
TGATGATGACATTGATGATG+AGG 0.621578 7_1:-62054989 Msa1028860:CDS
TATCAACTCACAGGACGCAA+AGG 0.625938 7_1:+62056350 None:intergenic
ACCTAGCAGACGCCGTCCTG+CGG 0.633483 7_1:+62055122 None:intergenic
GAGTGGTTTCAGTGCCTGGG+TGG 0.634998 7_1:-62057338 Msa1028860:CDS
AGTCGGGCTCAGTAAAGCCA+AGG 0.638264 7_1:-62055050 Msa1028860:CDS
ATTTGCTGGAAGATTCACAC+TGG 0.639436 7_1:+62054623 None:intergenic
CTACTGGAACAGAGCCAGAA+CGG 0.644056 7_1:+62056543 None:intergenic
TTGGTATTTCAGAGGCAATG+TGG 0.648210 7_1:-62060418 Msa1028860:intron
AGCAGGTCAGCAGTCATATG+CGG 0.648949 7_1:-62057451 Msa1028860:CDS
CTTTAGCTGAAGCCGCAGGA+CGG 0.650765 7_1:-62055134 Msa1028860:CDS
GGCACTGAAACCACTCCTTG+AGG 0.654184 7_1:+62057345 None:intergenic
GTAGATTTGGAGCAACATGT+CGG 0.656899 7_1:-62060298 Msa1028860:CDS
TCATCCTAAAGACAAGGCTG+GGG 0.657086 7_1:-62057950 Msa1028860:CDS
AATATGGTACTTCCAATGAG+AGG 0.663744 7_1:-62057510 Msa1028860:CDS
TTAAAGGTGCATAACTTGAG+GGG 0.664735 7_1:+62057373 None:intergenic
AGAGTGAGTTAACAAAACGT+GGG 0.665229 7_1:-62061352 Msa1028860:five_prime_UTR
TCAATGTCATCATCACCGGA+AGG 0.666162 7_1:+62054997 None:intergenic
GGGACTCAAAACACAATCAG+GGG 0.668670 7_1:+62056382 None:intergenic
TGAATACTAACTGGGCGGAG+TGG 0.668928 7_1:+62057892 None:intergenic
GGTATTGAGAATATACCCCT+GGG 0.672817 7_1:+62056564 None:intergenic
GGACGCAAAGGAAGGCCAAG+GGG 0.673705 7_1:+62056362 None:intergenic
CATATATTCCCAGTCCAAGG+TGG 0.674314 7_1:-62057401 Msa1028860:CDS
ACCTATGGAACTTCTCACCA+AGG 0.676965 7_1:-62056608 Msa1028860:CDS
ATGTTGCTCCAAATCTACAA+AGG 0.680968 7_1:+62060303 None:intergenic
GATGATGACATTGATGATGA+GGG 0.686486 7_1:-62054988 Msa1028860:CDS
GTTTCATCATCCTAAAGACA+AGG 0.693217 7_1:-62057956 Msa1028860:CDS
CGGGCTCAGTAAAGCCAAGG+AGG 0.694995 7_1:-62055047 Msa1028860:CDS
GAGTGAGTTAACAAAACGTG+GGG 0.698884 7_1:-62061351 Msa1028860:five_prime_UTR
CGTATTCCATTGATGCGATG+CGG 0.699906 7_1:+62061267 None:intergenic
ACATTGTATGTACTCCACCC+AGG 0.709130 7_1:+62057324 None:intergenic
CCAATTCTACATGAAGACTG+GGG 0.719635 7_1:-62056462 Msa1028860:CDS
AGGATGATGAAACCTGCATG+TGG 0.722276 7_1:+62057966 None:intergenic
AGAAAATGCAGGACTCCCAG+GGG 0.722646 7_1:-62056579 Msa1028860:CDS
TCTGTACATCTCCAGCAATG+GGG 0.726457 7_1:+62054883 None:intergenic
GTTTGTGAGTGTGACAGACA+GGG 0.735791 7_1:-62061322 Msa1028860:five_prime_UTR
TGTGAGTGTGACAGACAGGG+CGG 0.805451 7_1:-62061319 Msa1028860:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAACAAAAAAAAAA+AGG + chr7_1:62055016-62055035 None:intergenic 10.0%
!!! TTTTTTTTGTTTGTTTTTTT+TGG - chr7_1:62055018-62055037 Msa1028860:CDS 10.0%
!! ACATGTTTAAAAAAATAATT+TGG + chr7_1:62055334-62055353 None:intergenic 10.0%
!! AAATTTATTATGAATGTATT+TGG - chr7_1:62055911-62055930 Msa1028860:intron 10.0%
!! TAGACTATTAATTAATATTA+AGG + chr7_1:62058477-62058496 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGCAA+AGG + chr7_1:62059992-62060011 None:intergenic 10.0%
!! TGATAAAATGTTAAAAAAAA+AGG + chr7_1:62060303-62060322 None:intergenic 10.0%
!! ATATATAATAAATCAATGTT+TGG - chr7_1:62061472-62061491 Msa1028860:five_prime_UTR 10.0%
!!! TTTTGATTGTGATAATAAAA+AGG + chr7_1:62054644-62054663 None:intergenic 15.0%
!! ATGATTAAAAAAACAATTGT+TGG + chr7_1:62055277-62055296 None:intergenic 15.0%
!! AATATTCAAAGATGAAAAAA+TGG + chr7_1:62055409-62055428 None:intergenic 15.0%
!! GATATAACTATAAATTCAAA+GGG + chr7_1:62056591-62056610 None:intergenic 15.0%
!!! TCATTACAAATAAGTTTTAT+AGG - chr7_1:62056931-62056950 Msa1028860:intron 15.0%
!! ATATGTAAACTTATTATTAG+AGG - chr7_1:62057198-62057217 Msa1028860:intron 15.0%
!! ATAGAAATAAACATTCATAT+GGG + chr7_1:62057466-62057485 None:intergenic 15.0%
!! AATAGAAATAAACATTCATA+TGG + chr7_1:62057467-62057486 None:intergenic 15.0%
!! CAATTCAAATTTCTAATAAA+AGG - chr7_1:62057493-62057512 Msa1028860:CDS 15.0%
!!! CTTTTATTAGGATATTTTTT+AGG + chr7_1:62057522-62057541 None:intergenic 15.0%
!!! TAACATCATTATCTTTTATT+AGG + chr7_1:62057534-62057553 None:intergenic 15.0%
!! AGATATCAATATTTGTAATA+TGG + chr7_1:62058084-62058103 None:intergenic 15.0%
!! CATAGTATAAAAAGTTTATA+CGG + chr7_1:62058360-62058379 None:intergenic 15.0%
!! TACTTCATTATAATTATCAT+AGG - chr7_1:62059855-62059874 Msa1028860:intron 15.0%
!! TAAAATTAATACTTCTATGT+TGG - chr7_1:62060411-62060430 Msa1028860:intron 15.0%
!!! AATAATAACACTGATATTTT+GGG + chr7_1:62060684-62060703 None:intergenic 15.0%
!!! AAATAATAACACTGATATTT+TGG + chr7_1:62060685-62060704 None:intergenic 15.0%
!!! GTTTTACAATTTTTTTCTTA+GGG - chr7_1:62061187-62061206 Msa1028860:intron 15.0%
!!! TTTTACAATTTTTTTCTTAG+GGG - chr7_1:62061188-62061207 Msa1028860:intron 15.0%
!!! ATCAATATCCTTAATTTTTT+TGG - chr7_1:62061601-62061620 Msa1028860:five_prime_UTR 15.0%
!! AACAAAAAAAAAAAGGTAGT+TGG + chr7_1:62055009-62055028 None:intergenic 20.0%
!!! TGAATTACTAGTTTGAAAAA+AGG + chr7_1:62055155-62055174 None:intergenic 20.0%
!! AAAATTAGCAGAAAATTGAA+AGG + chr7_1:62055187-62055206 None:intergenic 20.0%
!! GTTATAGATTTAACATTAGA+TGG + chr7_1:62056262-62056281 None:intergenic 20.0%
!! TGGACATAATTAGATAATAT+AGG - chr7_1:62056311-62056330 Msa1028860:intron 20.0%
!! TAAAATTCCATCTATGAAAT+AGG + chr7_1:62056500-62056519 None:intergenic 20.0%
!! GGATATAACTATAAATTCAA+AGG + chr7_1:62056592-62056611 None:intergenic 20.0%
!!! ATATTTGTTATTCCTAGATA+GGG + chr7_1:62057182-62057201 None:intergenic 20.0%
!! CAGAGATAATAATACAAAAA+TGG + chr7_1:62057709-62057728 None:intergenic 20.0%
!! GTAATTACATATAAACAAGA+GGG + chr7_1:62058260-62058279 None:intergenic 20.0%
!! TGTAATTACATATAAACAAG+AGG + chr7_1:62058261-62058280 None:intergenic 20.0%
!! ATGAGTAATGAAACAATAAT+TGG + chr7_1:62058315-62058334 None:intergenic 20.0%
!! TTATTGTTTCATTACTCATT+TGG - chr7_1:62058316-62058335 Msa1028860:intron 20.0%
!! AATGGAATATTCATTATTCT+AGG - chr7_1:62059442-62059461 Msa1028860:intron 20.0%
!! ATGGAATATTCATTATTCTA+GGG - chr7_1:62059443-62059462 Msa1028860:intron 20.0%
!!! TTTAAATTTTGAGTTTGCTA+AGG - chr7_1:62059879-62059898 Msa1028860:intron 20.0%
!!! CGTTTTACAATTTTTTTCTT+AGG - chr7_1:62061186-62061205 Msa1028860:intron 20.0%
!! TCATAAATATTTGTCACATT+TGG - chr7_1:62061365-62061384 Msa1028860:five_prime_UTR 20.0%
!!! AGTATTTTCAATAGATAGAT+TGG + chr7_1:62061424-62061443 None:intergenic 20.0%
!! AAGATTGTCCAAAAAAATTA+AGG + chr7_1:62061612-62061631 None:intergenic 20.0%
!! CACAATAATAAATACTTCAT+TGG + chr7_1:62061654-62061673 None:intergenic 20.0%
! AGAAACAGTTATAGATAGAT+TGG - chr7_1:62054489-62054508 Msa1028860:three_prime_UTR 25.0%
! TTATTCTTTGTTCTCATTTG+TGG - chr7_1:62054550-62054569 Msa1028860:three_prime_UTR 25.0%
!! AATAATTGTGTTTTCTCTCT+TGG - chr7_1:62054692-62054711 Msa1028860:three_prime_UTR 25.0%
! TTGGTTTATCATGAAATCAA+CGG + chr7_1:62055315-62055334 None:intergenic 25.0%
!!! TTAACTTTTTCATTACACAG+TGG - chr7_1:62055510-62055529 Msa1028860:intron 25.0%
!!! TAACTTTTTCATTACACAGT+GGG - chr7_1:62055511-62055530 Msa1028860:intron 25.0%
! ATGGTTATGTATCTGAAAAA+TGG + chr7_1:62055585-62055604 None:intergenic 25.0%
! CTTATGTAATATGAACAATC+TGG + chr7_1:62055791-62055810 None:intergenic 25.0%
! TGTTCATATTACATAAGAAC+CGG - chr7_1:62055794-62055813 Msa1028860:intron 25.0%
! CTTGGAAATTAGTGATAATA+AGG + chr7_1:62055995-62056014 None:intergenic 25.0%
! CTTATTATCACTAATTTCCA+AGG - chr7_1:62055993-62056012 Msa1028860:intron 25.0%
!!! ATAGAAAAGTATCAACAAGA+CGG + chr7_1:62056286-62056305 None:intergenic 25.0%
!! TTGATACTTTTCTATTTGAC+TGG - chr7_1:62056291-62056310 Msa1028860:intron 25.0%
!! GTTTTACTTCAAATATTGTC+AGG - chr7_1:62056344-62056363 Msa1028860:intron 25.0%
!! TTTAGGAGTTATCTTTTAAC+GGG + chr7_1:62056630-62056649 None:intergenic 25.0%
!!! CTTTAGGAGTTATCTTTTAA+CGG + chr7_1:62056631-62056650 None:intergenic 25.0%
! AAAGATAACTCCTAAAGTAT+AGG - chr7_1:62056634-62056653 Msa1028860:CDS 25.0%
! AAGATAACTCCTAAAGTATA+GGG - chr7_1:62056635-62056654 Msa1028860:CDS 25.0%
! AACTCATTAGATGAACTATA+AGG + chr7_1:62056786-62056805 None:intergenic 25.0%
!!! TATTTGTTATTCCTAGATAG+GGG + chr7_1:62057181-62057200 None:intergenic 25.0%
!!! CATATTTGTTATTCCTAGAT+AGG + chr7_1:62057183-62057202 None:intergenic 25.0%
! TAGTAAAGTTATACAGCATT+TGG + chr7_1:62057271-62057290 None:intergenic 25.0%
! TTGTCCAAATTGTCTATATA+TGG + chr7_1:62057329-62057348 None:intergenic 25.0%
! ATATAGACAATTTGGACAAA+TGG - chr7_1:62057330-62057349 Msa1028860:CDS 25.0%
! TTGTTTGAAAGTAGTGTATT+TGG - chr7_1:62057754-62057773 Msa1028860:intron 25.0%
! TGTTTGAAAGTAGTGTATTT+GGG - chr7_1:62057755-62057774 Msa1028860:intron 25.0%
!!! TTTTTAAGTAATTAGCACAC+TGG + chr7_1:62057921-62057940 None:intergenic 25.0%
! AATAGATCTTAAGAGAAACA+TGG + chr7_1:62057951-62057970 None:intergenic 25.0%
!! GGAAATTTTGAATACTAACT+GGG + chr7_1:62058239-62058258 None:intergenic 25.0%
!!! CTCTGTTTTTCTAAAATTTG+TGG - chr7_1:62058405-62058424 Msa1028860:intron 25.0%
!! GTAATAAATAGAAGCATACA+AGG + chr7_1:62058431-62058450 None:intergenic 25.0%
!!! TACCTTACCTGAATTTTTTA+TGG - chr7_1:62058448-62058467 Msa1028860:intron 25.0%
!!! ACCTTACCTGAATTTTTTAT+GGG - chr7_1:62058449-62058468 Msa1028860:intron 25.0%
! TGTGCTTATTATTTAAGAAC+TGG - chr7_1:62058538-62058557 Msa1028860:intron 25.0%
! TGCATTAAATTAGAGGTTAA+AGG + chr7_1:62059322-62059341 None:intergenic 25.0%
! ACCTCTAATTTAATGCAATA+TGG - chr7_1:62059325-62059344 Msa1028860:intron 25.0%
! CAAATAACTGACAAAAGTAA+AGG + chr7_1:62060015-62060034 None:intergenic 25.0%
! ATATCTCTACTAAAATCGTA+GGG + chr7_1:62060073-62060092 None:intergenic 25.0%
! TATATCTCTACTAAAATCGT+AGG + chr7_1:62060074-62060093 None:intergenic 25.0%
! AAGATTGATTATAACTTCTC+TGG - chr7_1:62060226-62060245 Msa1028860:intron 25.0%
!! ATTGTATGATGATAACTTGT+TGG - chr7_1:62060277-62060296 Msa1028860:CDS 25.0%
! CTAGTTACTAACAGTAATAA+CGG - chr7_1:62060386-62060405 Msa1028860:CDS 25.0%
! AGTAAACATTGACCTTTAAT+TGG - chr7_1:62060729-62060748 Msa1028860:intron 25.0%
! GTAAACATTGACCTTTAATT+GGG - chr7_1:62060730-62060749 Msa1028860:intron 25.0%
!!! CAGAAAGATATTTTTTACAC+TGG + chr7_1:62061449-62061468 None:intergenic 25.0%
! CAGTGTAAAAAATATCTTTC+TGG - chr7_1:62061447-62061466 Msa1028860:five_prime_UTR 25.0%
!! TTTTCTTTAACGAAACAGTT+GGG - chr7_1:62061522-62061541 Msa1028860:five_prime_UTR 25.0%
!!! TGTATAGAAATTTGTTGCAA+TGG - chr7_1:62061563-62061582 Msa1028860:five_prime_UTR 25.0%
ATAGATAGATAGATGAGATG+AGG - chr7_1:62054512-62054531 Msa1028860:three_prime_UTR 30.0%
TTGAAGAATTAAGCGATGAT+CGG + chr7_1:62054920-62054939 None:intergenic 30.0%
!! CTTTTGAAAAGTCGTACAAA+GGG - chr7_1:62055486-62055505 Msa1028860:intron 30.0%
!! TTTTGAAAAGTCGTACAAAG+GGG - chr7_1:62055487-62055506 Msa1028860:intron 30.0%
!!! AACTTTTTCATTACACAGTG+GGG - chr7_1:62055512-62055531 Msa1028860:intron 30.0%
!!! AAATTGACTTGTACGTGTTT+TGG - chr7_1:62055683-62055702 Msa1028860:intron 30.0%
TACGAACTATGCATTTCATA+TGG - chr7_1:62055873-62055892 Msa1028860:intron 30.0%
CAGTTGAAACTGAAACTATT+TGG - chr7_1:62056032-62056051 Msa1028860:intron 30.0%
GAAAGCAGTGAAAAGAAATT+TGG + chr7_1:62056209-62056228 None:intergenic 30.0%
GTGAATTCCTATTTCATAGA+TGG - chr7_1:62056490-62056509 Msa1028860:CDS 30.0%
!! CATGAAATCTTTAGAACACT+TGG - chr7_1:62056539-62056558 Msa1028860:CDS 30.0%
!! AATCTTTAGAACACTTGGAA+TGG - chr7_1:62056544-62056563 Msa1028860:CDS 30.0%
!! ATCTTTAGAACACTTGGAAT+GGG - chr7_1:62056545-62056564 Msa1028860:CDS 30.0%
TATGGGATAAAGTGTAACTA+TGG + chr7_1:62056832-62056851 None:intergenic 30.0%
ACACTTTATCCCATATAAGA+TGG - chr7_1:62056837-62056856 Msa1028860:intron 30.0%
TAGATGTTGAATGACTAGAT+TGG - chr7_1:62056881-62056900 Msa1028860:intron 30.0%
AATGATTGAGTTTCATTGCA+CGG + chr7_1:62056916-62056935 None:intergenic 30.0%
!! AAAAGCAGAGTTTCAAGTTA+TGG + chr7_1:62057025-62057044 None:intergenic 30.0%
ATCTTTCAAACTGAAGACTT+GGG + chr7_1:62057103-62057122 None:intergenic 30.0%
TATCTTTCAAACTGAAGACT+TGG + chr7_1:62057104-62057123 None:intergenic 30.0%
ATTTGGTATAGTACGTACTA+AGG + chr7_1:62057254-62057273 None:intergenic 30.0%
GAGACCATATATAGACAATT+TGG - chr7_1:62057322-62057341 Msa1028860:intron 30.0%
CTATGTGCGATAATTAGATT+TGG - chr7_1:62057571-62057590 Msa1028860:CDS 30.0%
! ATCCTTTGTCTTTTGATGAA+TGG - chr7_1:62057621-62057640 Msa1028860:intron 30.0%
!! GGTTTTCTTTTGTTTCACAT+AGG + chr7_1:62057878-62057897 None:intergenic 30.0%
AAACCAGTTTAACAATTCAC+TGG - chr7_1:62057893-62057912 Msa1028860:intron 30.0%
ACAATGACTAAAGCAATACT+GGG + chr7_1:62058030-62058049 None:intergenic 30.0%
TACAATGACTAAAGCAATAC+TGG + chr7_1:62058031-62058050 None:intergenic 30.0%
TTACAGTACTATCTGAAAAC+AGG - chr7_1:62058114-62058133 Msa1028860:intron 30.0%
AAAACAGGAACTTGCAAATT+TGG - chr7_1:62058129-62058148 Msa1028860:intron 30.0%
! AGAGTTGCCTTGAATATTTT+AGG - chr7_1:62058201-62058220 Msa1028860:intron 30.0%
TGGATAGCCTAAAATATTCA+AGG + chr7_1:62058211-62058230 None:intergenic 30.0%
! AATTTTGAATACTAACTGGG+CGG + chr7_1:62058236-62058255 None:intergenic 30.0%
! GGGAAATTTTGAATACTAAC+TGG + chr7_1:62058240-62058259 None:intergenic 30.0%
! ACTCATTTGGTTTCATTCAA+TGG - chr7_1:62058329-62058348 Msa1028860:intron 30.0%
TCCCATAAAAAATTCAGGTA+AGG + chr7_1:62058453-62058472 None:intergenic 30.0%
AAGGATCCCATAAAAAATTC+AGG + chr7_1:62058458-62058477 None:intergenic 30.0%
!! ATTGGAAGTACCATATTACT+TGG + chr7_1:62058607-62058626 None:intergenic 30.0%
! ATTAAAGGTGCATAACTTGA+GGG + chr7_1:62058751-62058770 None:intergenic 30.0%
! AATTAAAGGTGCATAACTTG+AGG + chr7_1:62058752-62058771 None:intergenic 30.0%
! TTGTGTTTTCACATAGCTTA+AGG - chr7_1:62058954-62058973 Msa1028860:intron 30.0%
! TTTCACATAGCTTAAGGTTT+TGG - chr7_1:62058960-62058979 Msa1028860:intron 30.0%
GCCATATTGCATTAAATTAG+AGG + chr7_1:62059329-62059348 None:intergenic 30.0%
ATGCTAACACATTACAGTAT+TGG + chr7_1:62059384-62059403 None:intergenic 30.0%
TGTAATGTGTTAGCATCTAA+TGG - chr7_1:62059388-62059407 Msa1028860:intron 30.0%
ATGCTAACACATTACAGTAT+TGG + chr7_1:62059384-62059403 None:intergenic 30.0%
!! TTCATTATTCTAGGGTCAAA+TGG - chr7_1:62059451-62059470 Msa1028860:intron 30.0%
!! TCATTATTCTAGGGTCAAAT+GGG - chr7_1:62059452-62059471 Msa1028860:intron 30.0%
! TCATTTCTCATTGTTTGTTG+TGG + chr7_1:62059488-62059507 None:intergenic 30.0%
ATGAGAAATGATCAAACCTA+TGG - chr7_1:62059497-62059516 Msa1028860:intron 30.0%
ATAACAAGATATCAACTCAC+AGG + chr7_1:62059782-62059801 None:intergenic 30.0%
!! GTGAGTTGATATCTTGTTAT+CGG - chr7_1:62059782-62059801 Msa1028860:intron 30.0%
! AGTCTTCTTAATTTTGCTTG+TGG - chr7_1:62059917-62059936 Msa1028860:intron 30.0%
AATATGGGTCATCTGATTTA+GGG - chr7_1:62060150-62060169 Msa1028860:intron 30.0%
!! TCACTTTGTTTCTAAAAGCT+AGG - chr7_1:62060320-62060339 Msa1028860:CDS 30.0%
!!! TGTTCTCATCACATTGATTT+TGG - chr7_1:62060820-62060839 Msa1028860:intron 30.0%
!! ATTTTGGTACAATCTGATAG+AGG - chr7_1:62060836-62060855 Msa1028860:intron 30.0%
GCATTAAGTTTATCATCAGA+AGG - chr7_1:62061039-62061058 Msa1028860:intron 30.0%
ATAATGTTGTCTCTTGGAAA+TGG - chr7_1:62061155-62061174 Msa1028860:intron 30.0%
TAATGTTGTCTCTTGGAAAT+GGG - chr7_1:62061156-62061175 Msa1028860:intron 30.0%
AACTGAAGAAATGTTCACAT+TGG + chr7_1:62061398-62061417 None:intergenic 30.0%
CAACTGTTTCGTTAAAGAAA+AGG + chr7_1:62061523-62061542 None:intergenic 30.0%
! CTTTTCTTTAACGAAACAGT+TGG - chr7_1:62061521-62061540 Msa1028860:five_prime_UTR 30.0%
AAGGATATTGATCCTAATGT+TGG + chr7_1:62061593-62061612 None:intergenic 30.0%
ATAGATAGATGAGATGAGGT+TGG - chr7_1:62054516-62054535 Msa1028860:three_prime_UTR 35.0%
TTCTTTGTTCTCATTTGTGG+AGG - chr7_1:62054553-62054572 Msa1028860:three_prime_UTR 35.0%
AGAAAAAGAGAAAGAGAGAG+AGG + chr7_1:62054594-62054613 None:intergenic 35.0%
AAGAGTGAGTTAACAAAACG+TGG - chr7_1:62054767-62054786 Msa1028860:three_prime_UTR 35.0%
AGAGTGAGTTAACAAAACGT+GGG - chr7_1:62054768-62054787 Msa1028860:three_prime_UTR 35.0%
AAAAGAGAAGAGAACCTTGA+GGG + chr7_1:62054886-62054905 None:intergenic 35.0%
CATTTACCAACAGAAACACA+TGG + chr7_1:62055057-62055076 None:intergenic 35.0%
CTTTCTAACATATGCATGCA+AGG - chr7_1:62055218-62055237 Msa1028860:CDS 35.0%
TCTTCAGAGTCACACAAAAA+AGG + chr7_1:62055438-62055457 None:intergenic 35.0%
TTTCAAAAGCTGTAGTGTCA+TGG + chr7_1:62055475-62055494 None:intergenic 35.0%
!! GCTTTTGAAAAGTCGTACAA+AGG - chr7_1:62055485-62055504 Msa1028860:intron 35.0%
! GGCATTGTGGATTTAACTTA+TGG + chr7_1:62055604-62055623 None:intergenic 35.0%
!!! TACGTGTTTTGGTATTTCAG+AGG - chr7_1:62055694-62055713 Msa1028860:intron 35.0%
ATGTTGCTCCAAATCTACAA+AGG + chr7_1:62055820-62055839 None:intergenic 35.0%
TGTTGAAAGAAGAACAGCAA+GGG + chr7_1:62056070-62056089 None:intergenic 35.0%
TTGTTGAAAGAAGAACAGCA+AGG + chr7_1:62056071-62056090 None:intergenic 35.0%
TTCAACAAGTGATCTTTGCT+TGG - chr7_1:62056083-62056102 Msa1028860:intron 35.0%
TGTTTCTCAATGACTGCATA+AGG - chr7_1:62056438-62056457 Msa1028860:CDS 35.0%
AACGGGATTTGAATTGTTAC+TGG + chr7_1:62056613-62056632 None:intergenic 35.0%
GTCTTGTATCCCTATACTTT+AGG + chr7_1:62056647-62056666 None:intergenic 35.0%
AGCTGATTGCCATCTTATAT+GGG + chr7_1:62056849-62056868 None:intergenic 35.0%
AAGCTGATTGCCATCTTATA+TGG + chr7_1:62056850-62056869 None:intergenic 35.0%
! ACAGTATTTTGTTGGGATTG+AGG + chr7_1:62057074-62057093 None:intergenic 35.0%
TCCCAACAAAATACTGTAGT+TGG - chr7_1:62057077-62057096 Msa1028860:intron 35.0%
! GCCAACTACAGTATTTTGTT+GGG + chr7_1:62057081-62057100 None:intergenic 35.0%
AGTAATGATAACCCCTATCT+AGG - chr7_1:62057167-62057186 Msa1028860:intron 35.0%
AATCTTTGCAAACTGTGCAT+TGG - chr7_1:62057290-62057309 Msa1028860:intron 35.0%
ATCTTTGCAAACTGTGCATT+GGG - chr7_1:62057291-62057310 Msa1028860:intron 35.0%
TAGACAATTTGGACAAATGG+CGG - chr7_1:62057333-62057352 Msa1028860:CDS 35.0%
!! AGAAAGTATTCCCATGATCA+AGG - chr7_1:62057370-62057389 Msa1028860:CDS 35.0%
AAAGGATGTCTTCCTCATAT+TGG + chr7_1:62057608-62057627 None:intergenic 35.0%
CTCCATTCATCAAAAGACAA+AGG + chr7_1:62057626-62057645 None:intergenic 35.0%
! GTCTTTTGATGAATGGAGAT+TGG - chr7_1:62057628-62057647 Msa1028860:intron 35.0%
TATTATTATCTCTGCCTCTC+TGG - chr7_1:62057715-62057734 Msa1028860:intron 35.0%
CAAAATAAGTCATTCCAGAG+AGG + chr7_1:62057732-62057751 None:intergenic 35.0%
GAACCAGTGAATTGTTAAAC+TGG + chr7_1:62057899-62057918 None:intergenic 35.0%
ATACTGGGGCTTAACATTAT+AGG + chr7_1:62058015-62058034 None:intergenic 35.0%
CAATGACTAAAGCAATACTG+GGG + chr7_1:62058029-62058048 None:intergenic 35.0%
GTTTCATCATCCTAAAGACA+AGG - chr7_1:62058164-62058183 Msa1028860:intron 35.0%
! TCGATGAACGTTTACTGATT+TGG + chr7_1:62058285-62058304 None:intergenic 35.0%
!! AGTAAACGTTCATCGATTTG+TGG - chr7_1:62058289-62058308 Msa1028860:intron 35.0%
AGAACTGGTCAATGCAAATT+TGG - chr7_1:62058553-62058572 Msa1028860:intron 35.0%
GAACTGGTCAATGCAAATTT+GGG - chr7_1:62058554-62058573 Msa1028860:intron 35.0%
AGTACCATATTACTTGGTTG+AGG + chr7_1:62058601-62058620 None:intergenic 35.0%
AATATGGTACTTCCAATGAG+AGG - chr7_1:62058610-62058629 Msa1028860:intron 35.0%
! TTAAAGGTGCATAACTTGAG+GGG + chr7_1:62058750-62058769 None:intergenic 35.0%
ACTCCTTGAGGTAGAATTAA+AGG + chr7_1:62058766-62058785 None:intergenic 35.0%
TTTAATTCTACCTCAAGGAG+TGG - chr7_1:62058765-62058784 Msa1028860:intron 35.0%
! AGATCATCCAATCTTTTCGT+AGG - chr7_1:62058820-62058839 Msa1028860:intron 35.0%
! ATCCAATCTTTTCGTAGGAT+AGG - chr7_1:62058825-62058844 Msa1028860:intron 35.0%
AACCTATCCTACGAAAAGAT+TGG + chr7_1:62058830-62058849 None:intergenic 35.0%
CGTAGGATAGGTTATAACAA+AGG - chr7_1:62058837-62058856 Msa1028860:intron 35.0%
AACAAAGGAATAGAAAGACG+TGG - chr7_1:62058852-62058871 Msa1028860:intron 35.0%
!! GCTTAAGGTTTTGGTATAGT+TGG - chr7_1:62058969-62058988 Msa1028860:intron 35.0%
! CACACACACAAGTGTATTTT+TGG + chr7_1:62059031-62059050 None:intergenic 35.0%
!! GCTTGAACTTTTTGAAGAGT+TGG - chr7_1:62059124-62059143 Msa1028860:intron 35.0%
AACACCATGGTTAAGTTAGT+TGG - chr7_1:62059152-62059171 Msa1028860:intron 35.0%
ACACCATGGTTAAGTTAGTT+GGG - chr7_1:62059153-62059172 Msa1028860:intron 35.0%
GAAATAGACCTTTATGGACA+AGG + chr7_1:62059206-62059225 None:intergenic 35.0%
CCAGAAGAAATAGACCTTTA+TGG + chr7_1:62059212-62059231 None:intergenic 35.0%
! CCATAAAGGTCTATTTCTTC+TGG - chr7_1:62059209-62059228 Msa1028860:intron 35.0%
!! GCGTTTTTCAGAGAATAACT+TGG - chr7_1:62059269-62059288 Msa1028860:intron 35.0%
TTGGCATCATCTGTATGATA+TGG - chr7_1:62059288-62059307 Msa1028860:intron 35.0%
GTATATTCTCAATACCGTTC+TGG - chr7_1:62059563-62059582 Msa1028860:intron 35.0%
TAGGATTCTATGCTTTGCAA+AGG - chr7_1:62059597-62059616 Msa1028860:intron 35.0%
AGGATTCTATGCTTTGCAAA+GGG - chr7_1:62059598-62059617 Msa1028860:intron 35.0%
TTCATGTAGAATTGGCATTC+AGG + chr7_1:62059653-62059672 None:intergenic 35.0%
!!! TATCCTTTGAGTTTTAGCTC+TGG - chr7_1:62060041-62060060 Msa1028860:intron 35.0%
ATATACCCAGCACAATTGTT+GGG - chr7_1:62060089-62060108 Msa1028860:intron 35.0%
GATGACCCATATTGAGTATA+GGG + chr7_1:62060143-62060162 None:intergenic 35.0%
AGATGACCCATATTGAGTAT+AGG + chr7_1:62060144-62060163 None:intergenic 35.0%
CAATATGGGTCATCTGATTT+AGG - chr7_1:62060149-62060168 Msa1028860:intron 35.0%
!!! CTTGTTGTGTTGATAGCTTT+TGG + chr7_1:62060359-62060378 None:intergenic 35.0%
TTCCCACTTAAGATGTTACA+TGG - chr7_1:62060445-62060464 Msa1028860:intron 35.0%
TCCCACTTAAGATGTTACAT+GGG - chr7_1:62060446-62060465 Msa1028860:intron 35.0%
TCCCATGTAACATCTTAAGT+GGG + chr7_1:62060450-62060469 None:intergenic 35.0%
TTCCCATGTAACATCTTAAG+TGG + chr7_1:62060451-62060470 None:intergenic 35.0%
TAAGATGTTACATGGGAAAC+AGG - chr7_1:62060453-62060472 Msa1028860:intron 35.0%
AAGATGTTACATGGGAAACA+GGG - chr7_1:62060454-62060473 Msa1028860:intron 35.0%
ATATTAGTTACTCCCTTTGC+TGG + chr7_1:62060504-62060523 None:intergenic 35.0%
AATATCCCATGGTCTCATAT+TGG - chr7_1:62060519-62060538 Msa1028860:intron 35.0%
TATGGGATATATTGGAACCA+AGG - chr7_1:62060566-62060585 Msa1028860:intron 35.0%
ATGGGATATATTGGAACCAA+GGG - chr7_1:62060567-62060586 Msa1028860:intron 35.0%
ATACAAGCTACTATTTCCCT+TGG + chr7_1:62060586-62060605 None:intergenic 35.0%
TCTAAACAAATCGTGATCTG+TGG - chr7_1:62060621-62060640 Msa1028860:intron 35.0%
TATTCGCTTCACCCAATTAA+AGG + chr7_1:62060744-62060763 None:intergenic 35.0%
CACTTTGTGTATTCTATTCG+CGG - chr7_1:62060884-62060903 Msa1028860:intron 35.0%
TTATAGGTGAAGATTCCCAT+TGG + chr7_1:62060952-62060971 None:intergenic 35.0%
AGGTGATGCAGATACATTAT+AGG + chr7_1:62060968-62060987 None:intergenic 35.0%
ATCATCAATGTCATCATCAC+CGG + chr7_1:62061130-62061149 None:intergenic 35.0%
!! TGATGATGACATTGATGATG+AGG - chr7_1:62061131-62061150 Msa1028860:intron 35.0%
!! GATGATGACATTGATGATGA+GGG - chr7_1:62061132-62061151 Msa1028860:intron 35.0%
TTTGACATGAACTCTGTGTT+TGG + chr7_1:62061266-62061285 None:intergenic 35.0%
AACCTACTATTGAATGCAGT+TGG - chr7_1:62061297-62061316 Msa1028860:five_prime_UTR 35.0%
CGTTAAAGAAAAGGATTTGC+TGG + chr7_1:62061514-62061533 None:intergenic 35.0%
! ATAGATGAGATGAGGTTGGT+TGG - chr7_1:62054520-62054539 Msa1028860:three_prime_UTR 40.0%
! TTTCTCTCTTGGTTGAGTTG+AGG - chr7_1:62054703-62054722 Msa1028860:three_prime_UTR 40.0%
!! TTCTCTCTTGGTTGAGTTGA+GGG - chr7_1:62054704-62054723 Msa1028860:three_prime_UTR 40.0%
GAGTGAGTTAACAAAACGTG+GGG - chr7_1:62054769-62054788 Msa1028860:three_prime_UTR 40.0%
GAAAAGAGAAGAGAACCTTG+AGG + chr7_1:62054887-62054906 None:intergenic 40.0%
AATTAAGCGATGATCGGTGA+TGG + chr7_1:62054914-62054933 None:intergenic 40.0%
!! AGTTGGTTTGAAGAGAGTGA+CGG + chr7_1:62054992-62055011 None:intergenic 40.0%
GATCAATTCCACTTTCACAC+TGG + chr7_1:62055625-62055644 None:intergenic 40.0%
TTGGTATTTCAGAGGCAATG+TGG - chr7_1:62055702-62055721 Msa1028860:intron 40.0%
CCTGATTCCATTGTTTCACT+TGG + chr7_1:62055743-62055762 None:intergenic 40.0%
CCAAGTGAAACAATGGAATC+AGG - chr7_1:62055740-62055759 Msa1028860:intron 40.0%
!! TATGAACAATCTGGTTCTCC+AGG + chr7_1:62055782-62055801 None:intergenic 40.0%
! GTAGATTTGGAGCAACATGT+CGG - chr7_1:62055822-62055841 Msa1028860:intron 40.0%
GGTTTAATCATCCTCCTAAC+AGG - chr7_1:62055843-62055862 Msa1028860:intron 40.0%
ATCACTAATTTCCAAGGTGC+TGG - chr7_1:62055999-62056018 Msa1028860:intron 40.0%
TTGAAAGAAGAACAGCAAGG+GGG + chr7_1:62056068-62056087 None:intergenic 40.0%
GTTGAAAGAAGAACAGCAAG+GGG + chr7_1:62056069-62056088 None:intergenic 40.0%
AATTACCTGCACACATGTTC+AGG - chr7_1:62056120-62056139 Msa1028860:intron 40.0%
AAGTATAGGGATACAAGACG+AGG - chr7_1:62056648-62056667 Msa1028860:CDS 40.0%
CCAAATCTCTTCAAGCACAT+AGG + chr7_1:62056755-62056774 None:intergenic 40.0%
CCTATGTGCTTGAAGAGATT+TGG - chr7_1:62056752-62056771 Msa1028860:intron 40.0%
! GGCCAACTACAGTATTTTGT+TGG + chr7_1:62057082-62057101 None:intergenic 40.0%
AATTTGGACAAATGGCGGTT+TGG - chr7_1:62057338-62057357 Msa1028860:CDS 40.0%
!! TCAAAGCCTCATTTTAACCC+CGG + chr7_1:62057396-62057415 None:intergenic 40.0%
TCTTCCTCATATTGGACATG+AGG + chr7_1:62057600-62057619 None:intergenic 40.0%
! AATCCTATTTGAGGCATGTC+AGG + chr7_1:62057838-62057857 None:intergenic 40.0%
ACTGGAGGTAATCCTATTTG+AGG + chr7_1:62057847-62057866 None:intergenic 40.0%
AATAGGATTACCTCCAGTAG+AGG - chr7_1:62057849-62057868 Msa1028860:intron 40.0%
ATAGGATTACCTCCAGTAGA+GGG - chr7_1:62057850-62057869 Msa1028860:intron 40.0%
ATCATCCTAAAGACAAGGCT+GGG - chr7_1:62058169-62058188 Msa1028860:intron 40.0%
CCATATTACTTGGTTGAGGA+TGG + chr7_1:62058597-62058616 None:intergenic 40.0%
CCATCCTCAACCAAGTAATA+TGG - chr7_1:62058594-62058613 Msa1028860:intron 40.0%
TAAACAGGAGAACCTCTCAT+TGG + chr7_1:62058625-62058644 None:intergenic 40.0%
ATGCGGCAGGAATTACAAAT+TGG - chr7_1:62058686-62058705 Msa1028860:intron 40.0%
CATCATATATTCCCAGTCCA+AGG - chr7_1:62058716-62058735 Msa1028860:intron 40.0%
GCACCTTTAATTCTACCTCA+AGG - chr7_1:62058760-62058779 Msa1028860:intron 40.0%
TATGACACACTCTTGAAGTG+TGG + chr7_1:62058905-62058924 None:intergenic 40.0%
GGTATAGTTGGTTAGTGACA+TGG - chr7_1:62058981-62059000 Msa1028860:intron 40.0%
! AGAGTTGGTTCATAACACCA+TGG - chr7_1:62059139-62059158 Msa1028860:intron 40.0%
! GGTATTGAGAATATACCCCT+GGG + chr7_1:62059559-62059578 None:intergenic 40.0%
TGCAAAGCATAGAATCCTAC+TGG + chr7_1:62059596-62059615 None:intergenic 40.0%
TGCCAATTCTACATGAAGAC+TGG - chr7_1:62059656-62059675 Msa1028860:intron 40.0%
GCCAATTCTACATGAAGACT+GGG - chr7_1:62059657-62059676 Msa1028860:intron 40.0%
CCAATTCTACATGAAGACTG+GGG - chr7_1:62059658-62059677 Msa1028860:intron 40.0%
!!! TTTTGAGTTTGCTAAGGCCT+CGG - chr7_1:62059885-62059904 Msa1028860:intron 40.0%
! AGAAGACTCATTCTTTTCCG+AGG + chr7_1:62059905-62059924 None:intergenic 40.0%
TGTCCAGAGCTAAAACTCAA+AGG + chr7_1:62060047-62060066 None:intergenic 40.0%
!!! TTTGAGTTTTAGCTCTGGAC+AGG - chr7_1:62060046-62060065 Msa1028860:intron 40.0%
GATATACCCAGCACAATTGT+TGG - chr7_1:62060088-62060107 Msa1028860:intron 40.0%
TTGGGACCCTATACTCAATA+TGG - chr7_1:62060134-62060153 Msa1028860:intron 40.0%
TGGGACCCTATACTCAATAT+GGG - chr7_1:62060135-62060154 Msa1028860:intron 40.0%
! AGCGTCGAGTTCATAATTTC+TGG + chr7_1:62060194-62060213 None:intergenic 40.0%
AGAAATTATGAACTCGACGC+TGG - chr7_1:62060193-62060212 Msa1028860:intron 40.0%
TTACATGGGAAACAGGGTAA+CGG - chr7_1:62060460-62060479 Msa1028860:intron 40.0%
TTGCTGGTCGTGATTACTTA+GGG + chr7_1:62060488-62060507 None:intergenic 40.0%
TTTGCTGGTCGTGATTACTT+AGG + chr7_1:62060489-62060508 None:intergenic 40.0%
TAAGTAATCACGACCAGCAA+AGG - chr7_1:62060488-62060507 Msa1028860:intron 40.0%
AAGTAATCACGACCAGCAAA+GGG - chr7_1:62060489-62060508 Msa1028860:intron 40.0%
AGGGAGTAACTAATATCCCA+TGG - chr7_1:62060508-62060527 Msa1028860:intron 40.0%
TCTCTCCAATATGAGACCAT+GGG + chr7_1:62060527-62060546 None:intergenic 40.0%
AAAAAGAGCAGAGGCAGTAT+GGG - chr7_1:62060549-62060568 Msa1028860:intron 40.0%
AGAGGCAGTATGGGATATAT+TGG - chr7_1:62060558-62060577 Msa1028860:intron 40.0%
! AGGTAATCCCATTTTCTGCA+GGG - chr7_1:62060856-62060875 Msa1028860:intron 40.0%
CGCGAATAGAATACACAAAG+TGG + chr7_1:62060886-62060905 None:intergenic 40.0%
TGTGTATTCTATTCGCGGTA+TGG - chr7_1:62060889-62060908 Msa1028860:intron 40.0%
CGGTATGGCATATGCAAATT+TGG - chr7_1:62060904-62060923 Msa1028860:intron 40.0%
TGCAAGTTTGACCATCCAAT+GGG - chr7_1:62060934-62060953 Msa1028860:intron 40.0%
!! ATCAGAAGGACTTGTTGAGT+CGG - chr7_1:62061053-62061072 Msa1028860:intron 40.0%
! TCTGATAATGAAAGCCTCCT+TGG + chr7_1:62061090-62061109 None:intergenic 40.0%
TGAGGGATAATGTTGTCTCT+TGG - chr7_1:62061149-62061168 Msa1028860:intron 40.0%
! TGAATTGATTTCCCCATTGC+TGG - chr7_1:62061226-62061245 Msa1028860:intron 40.0%
TGCCAACTGCATTCAATAGT+AGG + chr7_1:62061302-62061321 None:intergenic 40.0%
! ATTTGCTGGAAGATTCACAC+TGG + chr7_1:62061500-62061519 None:intergenic 40.0%
! ATGAGATGAGGTTGGTTGGT+TGG - chr7_1:62054524-62054543 Msa1028860:three_prime_UTR 45.0%
AGTTTGTGAGTGTGACAGAC+AGG - chr7_1:62054797-62054816 Msa1028860:three_prime_UTR 45.0%
GTTTGTGAGTGTGACAGACA+GGG - chr7_1:62054798-62054817 Msa1028860:three_prime_UTR 45.0%
TATATGCCGCATCGCATCAA+TGG - chr7_1:62054847-62054866 Msa1028860:three_prime_UTR 45.0%
CGTATTCCATTGATGCGATG+CGG + chr7_1:62054856-62054875 None:intergenic 45.0%
! GCAGTTCCATGTGTTTCTGT+TGG - chr7_1:62055048-62055067 Msa1028860:CDS 45.0%
AAGTTCCAAGTCACAGACAC+TGG + chr7_1:62055553-62055572 None:intergenic 45.0%
CAATGTGGCAAATGAGCTTG+AGG - chr7_1:62055717-62055736 Msa1028860:intron 45.0%
CTTGAGGCCAAGTGAAACAA+TGG - chr7_1:62055733-62055752 Msa1028860:intron 45.0%
AATGGAATCAGGACCGTATC+CGG - chr7_1:62055751-62055770 Msa1028860:intron 45.0%
AGAACCGGCCTTTGTAGATT+TGG - chr7_1:62055809-62055828 Msa1028860:intron 45.0%
TGCTCCAAATCTACAAAGGC+CGG + chr7_1:62055816-62055835 None:intergenic 45.0%
CAAGTACATGCCTGACATTC+TGG + chr7_1:62056420-62056439 None:intergenic 45.0%
GGGCTGAGAGATTTCTTCTT+AGG - chr7_1:62056565-62056584 Msa1028860:CDS 45.0%
! ACAAATGGCGGTTTGGCAAA+AGG - chr7_1:62057345-62057364 Msa1028860:CDS 45.0%
AGTATTCCCATGATCAAGGC+CGG - chr7_1:62057374-62057393 Msa1028860:CDS 45.0%
! AATGAGGCTTTGACACCAAC+TGG - chr7_1:62057403-62057422 Msa1028860:CDS 45.0%
GTATCCTTGAGAGTTCCAGT+TGG + chr7_1:62057421-62057440 None:intergenic 45.0%
CTGGAACTCTCAAGGATACT+TGG - chr7_1:62057422-62057441 Msa1028860:CDS 45.0%
! TTCATATGGGCTGATCTCTC+AGG + chr7_1:62057453-62057472 None:intergenic 45.0%
GAGTCCTCATGTCCAATATG+AGG - chr7_1:62057593-62057612 Msa1028860:CDS 45.0%
TGATGAATGGAGATTGGCAG+TGG - chr7_1:62057634-62057653 Msa1028860:intron 45.0%
GATGAATGGAGATTGGCAGT+GGG - chr7_1:62057635-62057654 Msa1028860:intron 45.0%
ATGAATGGAGATTGGCAGTG+GGG - chr7_1:62057636-62057655 Msa1028860:intron 45.0%
AGGATGATGAAACCTGCATG+TGG + chr7_1:62058157-62058176 None:intergenic 45.0%
CATCATCCTAAAGACAAGGC+TGG - chr7_1:62058168-62058187 Msa1028860:intron 45.0%
TCATCCTAAAGACAAGGCTG+GGG - chr7_1:62058170-62058189 Msa1028860:intron 45.0%
GACTGGACAGTAGGATAAAC+AGG + chr7_1:62058640-62058659 None:intergenic 45.0%
CATATATTCCCAGTCCAAGG+TGG - chr7_1:62058719-62058738 Msa1028860:intron 45.0%
ACATTGTATGTACTCCACCC+AGG + chr7_1:62058799-62058818 None:intergenic 45.0%
GACGTGGTATTCTATGCTTG+TGG - chr7_1:62058868-62058887 Msa1028860:intron 45.0%
! ATTCATGTGCTGCTGTCACT+TGG - chr7_1:62059099-62059118 Msa1028860:intron 45.0%
TCGCCCAACTAACTTAACCA+TGG + chr7_1:62059159-62059178 None:intergenic 45.0%
GGTTAAGTTAGTTGGGCGAT+TGG - chr7_1:62059160-62059179 Msa1028860:intron 45.0%
TATGGACAAGGACGTGAGAT+GGG + chr7_1:62059194-62059213 None:intergenic 45.0%
TTATGGACAAGGACGTGAGA+TGG + chr7_1:62059195-62059214 None:intergenic 45.0%
TCTCACGTCCTTGTCCATAA+AGG - chr7_1:62059195-62059214 Msa1028860:intron 45.0%
ACCTATGGAACTTCTCACCA+AGG - chr7_1:62059512-62059531 Msa1028860:intron 45.0%
ACCTTGGTGAGAAGTTCCAT+AGG + chr7_1:62059516-62059535 None:intergenic 45.0%
! CTGCATTTTCTGGATCACCT+TGG + chr7_1:62059532-62059551 None:intergenic 45.0%
CAAGGTGATCCAGAAAATGC+AGG - chr7_1:62059530-62059549 Msa1028860:intron 45.0%
! CGGTATTGAGAATATACCCC+TGG + chr7_1:62059560-62059579 None:intergenic 45.0%
AATTGGCATTCAGGCTGATC+AGG + chr7_1:62059644-62059663 None:intergenic 45.0%
CCCCAGTCTTCATGTAGAAT+TGG + chr7_1:62059661-62059680 None:intergenic 45.0%
AAGACTGGGGATTGCAAGTT+CGG - chr7_1:62059671-62059690 Msa1028860:intron 45.0%
GGGACTCAAAACACAATCAG+GGG + chr7_1:62059741-62059760 None:intergenic 45.0%
GGGGACTCAAAACACAATCA+GGG + chr7_1:62059742-62059761 None:intergenic 45.0%
AGGGGACTCAAAACACAATC+AGG + chr7_1:62059743-62059762 None:intergenic 45.0%
!! GATTGTGTTTTGAGTCCCCT+TGG - chr7_1:62059743-62059762 Msa1028860:intron 45.0%
TATCAACTCACAGGACGCAA+AGG + chr7_1:62059773-62059792 None:intergenic 45.0%
CAAAGCCCAACAATTGTGCT+GGG + chr7_1:62060097-62060116 None:intergenic 45.0%
ACAAAGCCCAACAATTGTGC+TGG + chr7_1:62060098-62060117 None:intergenic 45.0%
TGTGCTCTGTGCAGGAATAT+TGG - chr7_1:62060115-62060134 Msa1028860:intron 45.0%
GTGCTCTGTGCAGGAATATT+GGG - chr7_1:62060116-62060135 Msa1028860:intron 45.0%
CTCTCTCCAATATGAGACCA+TGG + chr7_1:62060528-62060547 None:intergenic 45.0%
CATGGTCTCATATTGGAGAG+AGG - chr7_1:62060526-62060545 Msa1028860:intron 45.0%
GAAAAAGAGCAGAGGCAGTA+TGG - chr7_1:62060548-62060567 Msa1028860:intron 45.0%
! GAGGTAATCCCATTTTCTGC+AGG - chr7_1:62060855-62060874 Msa1028860:intron 45.0%
TGGTTCTCCCTGCAGAAAAT+GGG + chr7_1:62060866-62060885 None:intergenic 45.0%
GATGGTCAAACTTGCAGCTT+GGG + chr7_1:62060930-62060949 None:intergenic 45.0%
CTGCAAGTTTGACCATCCAA+TGG - chr7_1:62060933-62060952 Msa1028860:intron 45.0%
AGGTGAAGATTCCCATTGGA+TGG + chr7_1:62060948-62060967 None:intergenic 45.0%
!! TCAGAAGGACTTGTTGAGTC+GGG - chr7_1:62061054-62061073 Msa1028860:intron 45.0%
TCATCATCACCGGAAGGATT+CGG + chr7_1:62061120-62061139 None:intergenic 45.0%
TCAATGTCATCATCACCGGA+AGG + chr7_1:62061126-62061145 None:intergenic 45.0%
TCTGTACATCTCCAGCAATG+GGG + chr7_1:62061240-62061259 None:intergenic 45.0%
CTCTGTACATCTCCAGCAAT+GGG + chr7_1:62061241-62061260 None:intergenic 45.0%
ACTCTGTACATCTCCAGCAA+TGG + chr7_1:62061242-62061261 None:intergenic 45.0%
AGCATGAAATCCAGAACGAC+TGG + chr7_1:62061328-62061347 None:intergenic 45.0%
TGCAATGGCAAGCCAACATT+AGG - chr7_1:62061578-62061597 Msa1028860:five_prime_UTR 45.0%
TGAAAAAAGGGAGCGAGCGA+GGG - chr7_1:62054446-62054465 Msa1028860:three_prime_UTR 50.0%
!! TCTCTTGGTTGAGTTGAGGG+TGG - chr7_1:62054707-62054726 Msa1028860:three_prime_UTR 50.0%
! TTGAGGGTGGAGGTTGATCT+CGG - chr7_1:62054720-62054739 Msa1028860:three_prime_UTR 50.0%
GAATACGATGCCATCCCTCA+AGG - chr7_1:62054869-62054888 Msa1028860:three_prime_UTR 50.0%
GAGAAGAGAACCTTGAGGGA+TGG + chr7_1:62054882-62054901 None:intergenic 50.0%
CCACTTTCACACTGGCATTG+TGG + chr7_1:62055617-62055636 None:intergenic 50.0%
CCACAATGCCAGTGTGAAAG+TGG - chr7_1:62055614-62055633 Msa1028860:intron 50.0%
TCATCCTCCTAACAGGAAGC+TGG - chr7_1:62055850-62055869 Msa1028860:intron 50.0%
GTTCGTACCAGCTTCCTGTT+AGG + chr7_1:62055860-62055879 None:intergenic 50.0%
GTACTCCTGAACATGTGTGC+AGG + chr7_1:62056128-62056147 None:intergenic 50.0%
ATTGCCACTGCACGGATGAA+AGG - chr7_1:62056369-62056388 Msa1028860:CDS 50.0%
TGAAAGGCGAGTTCCCAGAA+AGG - chr7_1:62056385-62056404 Msa1028860:CDS 50.0%
GCGAGTTCCCAGAAAGGTTA+GGG - chr7_1:62056391-62056410 Msa1028860:CDS 50.0%
ATCAACTCTCCCAACTCAGC+TGG - chr7_1:62056686-62056705 Msa1028860:intron 50.0%
TCAACTCTCCCAACTCAGCT+GGG - chr7_1:62056687-62056706 Msa1028860:intron 50.0%
GAGTTTCATTGCACGGACGT+TGG + chr7_1:62056909-62056928 None:intergenic 50.0%
GTATTCCCATGATCAAGGCC+GGG - chr7_1:62057375-62057394 Msa1028860:CDS 50.0%
TATTCCCATGATCAAGGCCG+GGG - chr7_1:62057376-62057395 Msa1028860:CDS 50.0%
TTAACCCCGGCCTTGATCAT+GGG + chr7_1:62057383-62057402 None:intergenic 50.0%
TTTAACCCCGGCCTTGATCA+TGG + chr7_1:62057384-62057403 None:intergenic 50.0%
TCAAGGCCGGGGTTAAAATG+AGG - chr7_1:62057387-62057406 Msa1028860:CDS 50.0%
GACACCAACTGGAACTCTCA+AGG - chr7_1:62057414-62057433 Msa1028860:CDS 50.0%
TGAATGGAGATTGGCAGTGG+GGG - chr7_1:62057637-62057656 Msa1028860:intron 50.0%
GTGCCTGACATGCCTCAAAT+AGG - chr7_1:62057832-62057851 Msa1028860:intron 50.0%
TTCACATAGGCTCCCTCTAC+TGG + chr7_1:62057865-62057884 None:intergenic 50.0%
! GCAAATTTGGAGCCACATGC+AGG - chr7_1:62058142-62058161 Msa1028860:intron 50.0%
TGAATACTAACTGGGCGGAG+TGG + chr7_1:62058231-62058250 None:intergenic 50.0%
GTAGTTGGAGACTGGACAGT+AGG + chr7_1:62058649-62058668 None:intergenic 50.0%
AGCAGGTCAGCAGTCATATG+CGG - chr7_1:62058669-62058688 Msa1028860:intron 50.0%
AAGGAGTGGTTTCAGTGCCT+GGG - chr7_1:62058779-62058798 Msa1028860:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr7_1:62059041-62059060 Msa1028860:intron 50.0%
TGTGTGTGTGTGTGTGTGGT+GGG - chr7_1:62059055-62059074 Msa1028860:intron 50.0%
ATGGACAAGGACGTGAGATG+GGG + chr7_1:62059193-62059212 None:intergenic 50.0%
CAGAAAATGCAGGACTCCCA+GGG - chr7_1:62059540-62059559 Msa1028860:intron 50.0%
AGAAAATGCAGGACTCCCAG+GGG - chr7_1:62059541-62059560 Msa1028860:intron 50.0%
CTACTGGAACAGAGCCAGAA+CGG + chr7_1:62059580-62059599 None:intergenic 50.0%
! GTTTTCACCATCCACGTGAG+AGG - chr7_1:62059705-62059724 Msa1028860:intron 50.0%
CTCAAAACACAATCAGGGGC+AGG + chr7_1:62059737-62059756 None:intergenic 50.0%
AACTCACAGGACGCAAAGGA+AGG + chr7_1:62059769-62059788 None:intergenic 50.0%
AACTCGACGCTGGAGCTAAA+AGG - chr7_1:62060203-62060222 Msa1028860:intron 50.0%
GGAGAGAGGAAAAAGAGCAG+AGG - chr7_1:62060540-62060559 Msa1028860:intron 50.0%
! TGTGGCAGCATTGCTGTTGA+TGG - chr7_1:62060648-62060667 Msa1028860:intron 50.0%
GTGGTTCTCCCTGCAGAAAA+TGG + chr7_1:62060867-62060886 None:intergenic 50.0%
GGATGGTCAAACTTGCAGCT+TGG + chr7_1:62060931-62060950 None:intergenic 50.0%
GAGACTAGACCGAATCCTTC+CGG - chr7_1:62061108-62061127 Msa1028860:intron 50.0%
GTTGGCAAATCCAGTCGTTC+TGG - chr7_1:62061315-62061334 Msa1028860:five_prime_UTR 50.0%
GTGAAAAAAGGGAGCGAGCG+AGG - chr7_1:62054445-62054464 Msa1028860:three_prime_UTR 55.0%
GAAAAAAGGGAGCGAGCGAG+GGG - chr7_1:62054447-62054466 Msa1028860:three_prime_UTR 55.0%
AAAAAAGGGAGCGAGCGAGG+GGG - chr7_1:62054448-62054467 Msa1028860:three_prime_UTR 55.0%
!! CTTGGTTGAGTTGAGGGTGG+AGG - chr7_1:62054710-62054729 Msa1028860:three_prime_UTR 55.0%
! TGAGGGTGGAGGTTGATCTC+GGG - chr7_1:62054721-62054740 Msa1028860:three_prime_UTR 55.0%
TGTGAGTGTGACAGACAGGG+CGG - chr7_1:62054801-62054820 Msa1028860:three_prime_UTR 55.0%
CCAAGTCACAGACACTGGCA+GGG + chr7_1:62055548-62055567 None:intergenic 55.0%
TCCAAGTCACAGACACTGGC+AGG + chr7_1:62055549-62055568 None:intergenic 55.0%
TCTCCAGGATGCTCCGGATA+CGG + chr7_1:62055767-62055786 None:intergenic 55.0%
!! TCTGGTTCTCCAGGATGCTC+CGG + chr7_1:62055773-62055792 None:intergenic 55.0%
CGTACCAGCTTCCTGTTAGG+AGG + chr7_1:62055857-62055876 None:intergenic 55.0%
!! TCCAAGGTGCTGGCAGCTAT+AGG - chr7_1:62056009-62056028 Msa1028860:intron 55.0%
AGAAGAACAGCAAGGGGGAG+TGG + chr7_1:62056063-62056082 None:intergenic 55.0%
GTCAGGCTATTGCCACTGCA+CGG - chr7_1:62056361-62056380 Msa1028860:CDS 55.0%
GGCGAGTTCCCAGAAAGGTT+AGG - chr7_1:62056390-62056409 Msa1028860:CDS 55.0%
CTGGCTGCCCTAACCTTTCT+GGG + chr7_1:62056401-62056420 None:intergenic 55.0%
TCTGGCTGCCCTAACCTTTC+TGG + chr7_1:62056402-62056421 None:intergenic 55.0%
GTTAGGGCAGCCAGAATGTC+AGG - chr7_1:62056407-62056426 Msa1028860:CDS 55.0%
CAACTCTCCCAACTCAGCTG+GGG - chr7_1:62056688-62056707 Msa1028860:intron 55.0%
ATGTCTGCCCCAGCTGAGTT+GGG + chr7_1:62056698-62056717 None:intergenic 55.0%
GAATGGAGATTGGCAGTGGG+GGG - chr7_1:62057638-62057657 Msa1028860:intron 55.0%
ACATAGGCTCCCTCTACTGG+AGG + chr7_1:62057862-62057881 None:intergenic 55.0%
! GCAACCCCAGCCTTGTCTTT+AGG + chr7_1:62058177-62058196 None:intergenic 55.0%
AAAGACAAGGCTGGGGTTGC+TGG - chr7_1:62058177-62058196 Msa1028860:intron 55.0%
GTCCAGTCTCCAACTACAGC+AGG - chr7_1:62058652-62058671 Msa1028860:intron 55.0%
GACCTGCTGTAGTTGGAGAC+TGG + chr7_1:62058657-62058676 None:intergenic 55.0%
GACTGCTGACCTGCTGTAGT+TGG + chr7_1:62058664-62058683 None:intergenic 55.0%
ATTCCCAGTCCAAGGTGGCA+AGG - chr7_1:62058724-62058743 Msa1028860:intron 55.0%
! GGCACTGAAACCACTCCTTG+AGG + chr7_1:62058778-62058797 None:intergenic 55.0%
CAAGGAGTGGTTTCAGTGCC+TGG - chr7_1:62058778-62058797 Msa1028860:intron 55.0%
GTGTGTGTGTGTGTGTGTGG+TGG - chr7_1:62059054-62059073 Msa1028860:intron 55.0%
GTGTGTGTGTGTGTGTGGTG+GGG - chr7_1:62059056-62059075 Msa1028860:intron 55.0%
TGTGTGTGTGTGTGTGGTGG+GGG - chr7_1:62059057-62059076 Msa1028860:intron 55.0%
! CATGTGCTGCTGTCACTTGG+TGG - chr7_1:62059102-62059121 Msa1028860:intron 55.0%
! CCTGGGAGTCCTGCATTTTC+TGG + chr7_1:62059542-62059561 None:intergenic 55.0%
CCAGAAAATGCAGGACTCCC+AGG - chr7_1:62059539-62059558 Msa1028860:intron 55.0%
!! CGTTCTGGCTCTGTTCCAGT+AGG - chr7_1:62059578-62059597 Msa1028860:intron 55.0%
TCAGGCTGATCAGGTCTCTC+TGG + chr7_1:62059635-62059654 None:intergenic 55.0%
GAATCGTCCTCTCACGTGGA+TGG + chr7_1:62059715-62059734 None:intergenic 55.0%
AGGACGCAAAGGAAGGCCAA+GGG + chr7_1:62059762-62059781 None:intergenic 55.0%
! TTGGGCTTTGTGCTCTGTGC+AGG - chr7_1:62060107-62060126 Msa1028860:intron 55.0%
ATCGTGATCTGTGGCAGCTG+TGG - chr7_1:62060630-62060649 Msa1028860:intron 55.0%
TCACCTTTAGCTGAAGCCGC+AGG - chr7_1:62060982-62061001 Msa1028860:intron 55.0%
CTTTAGCTGAAGCCGCAGGA+CGG - chr7_1:62060986-62061005 Msa1028860:intron 55.0%
CGTCTGCTAGGTTCTTCGTC+AGG - chr7_1:62061009-62061028 Msa1028860:intron 55.0%
AGTCGGGCTCAGTAAAGCCA+AGG - chr7_1:62061070-62061089 Msa1028860:intron 55.0%
AAAAAGGGAGCGAGCGAGGG+GGG - chr7_1:62054449-62054468 Msa1028860:three_prime_UTR 60.0%
! GACACTGGCAGGGTGCTTGA+TGG + chr7_1:62055538-62055557 None:intergenic 60.0%
CCCTGCCAGTGTCTGTGACT+TGG - chr7_1:62055545-62055564 Msa1028860:intron 60.0%
GCCTATAGCTGCCAGCACCT+TGG + chr7_1:62056013-62056032 None:intergenic 60.0%
CTCGCCTTTCATCCGTGCAG+TGG + chr7_1:62056376-62056395 None:intergenic 60.0%
CATGTCTGCCCCAGCTGAGT+TGG + chr7_1:62056699-62056718 None:intergenic 60.0%
GGTCAGCAGTCATATGCGGC+AGG - chr7_1:62058673-62058692 Msa1028860:intron 60.0%
GAGTGGTTTCAGTGCCTGGG+TGG - chr7_1:62058782-62058801 Msa1028860:intron 60.0%
! GTGTGTGTGTGTGTGGTGGG+GGG - chr7_1:62059058-62059077 Msa1028860:intron 60.0%
! TGTGTGGTGGGGGGCTTGTT+CGG - chr7_1:62059067-62059086 Msa1028860:intron 60.0%
GCAGGAATCGTCCTCTCACG+TGG + chr7_1:62059719-62059738 None:intergenic 60.0%
GGACGCAAAGGAAGGCCAAG+GGG + chr7_1:62059761-62059780 None:intergenic 60.0%
CAGGACGCAAAGGAAGGCCA+AGG + chr7_1:62059763-62059782 None:intergenic 60.0%
CGTCCTGCGGCTTCAGCTAA+AGG + chr7_1:62060988-62061007 None:intergenic 60.0%
CGGGCTCAGTAAAGCCAAGG+AGG - chr7_1:62061073-62061092 Msa1028860:intron 60.0%
! GGACCGTATCCGGAGCATCC+TGG - chr7_1:62055761-62055780 Msa1028860:intron 65.0%
GGGCCTTGCCACCTTGGACT+GGG + chr7_1:62058730-62058749 None:intergenic 65.0%
CTTGAGGGGCCTTGCCACCT+TGG + chr7_1:62058736-62058755 None:intergenic 65.0%
ACCTAGCAGACGCCGTCCTG+CGG + chr7_1:62061001-62061020 None:intergenic 65.0%
GCGAGCGAGGGGGGATCACT+AGG - chr7_1:62054458-62054477 Msa1028860:three_prime_UTR 70.0%
GGGGCCTTGCCACCTTGGAC+TGG + chr7_1:62058731-62058750 None:intergenic 70.0%
GCCGCAGGACGGCGTCTGCT+AGG - chr7_1:62060997-62061016 Msa1028860:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62054440 62061702 62054440 ID=Msa1028860;Name=Msa1028860
chr7_1 mRNA 62054440 62061702 62054440 ID=Msa1028860-mRNA-1;Parent=Msa1028860;Name=Msa1028860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=426|0.8|1|1|1|1|6|544|397
chr7_1 exon 62054440 62055265 62054440 ID=Msa1028860-mRNA-1:exon:13182;Parent=Msa1028860-mRNA-1
chr7_1 exon 62056361 62056678 62056361 ID=Msa1028860-mRNA-1:exon:13181;Parent=Msa1028860-mRNA-1
chr7_1 exon 62057326 62057616 62057326 ID=Msa1028860-mRNA-1:exon:13180;Parent=Msa1028860-mRNA-1
chr7_1 exon 62057903 62058022 62057903 ID=Msa1028860-mRNA-1:exon:13179;Parent=Msa1028860-mRNA-1
chr7_1 exon 62060271 62060428 62060271 ID=Msa1028860-mRNA-1:exon:13178;Parent=Msa1028860-mRNA-1
chr7_1 exon 62061252 62061702 62061252 ID=Msa1028860-mRNA-1:exon:13177;Parent=Msa1028860-mRNA-1
chr7_1 five_prime_UTR 62061277 62061702 62061277 ID=Msa1028860-mRNA-1:five_prime_utr;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62061252 62061276 62061252 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62060271 62060428 62060271 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62057903 62058022 62057903 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62057326 62057616 62057326 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62056361 62056678 62056361 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 CDS 62054984 62055265 62054984 ID=Msa1028860-mRNA-1:cds;Parent=Msa1028860-mRNA-1
chr7_1 three_prime_UTR 62054440 62054983 62054440 ID=Msa1028860-mRNA-1:three_prime_utr;Parent=Msa1028860-mRNA-1
Gene Sequence

>Msa1028860

ATGGAATACGATGCCATCCCTCAAGAGGCAATGTGGCAAATGAGCTTGAGGCCAAGTGAAACAATGGAATCAGGACCGTATCCGGAGCATCCTGGAGAACCAGATTGTTCATATTACATAAGAACCGGCCTTTGTAGATTTGGAGCAACATGTCGGTTTAATCATCCTCCTAACAGGAAGCTGTACTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACTGGTCAATGCAAATTTGGGAACACTTGTAAATTTCACCATCCTCAACCAAGTAATATGGTACTTCCAATGAGAGGTTCTCCTGTTTATCCTACTGTCCAGTCTCCAACTACAGCAGGTCAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTACTTCATCATATATTCCCAGTCCAAGGTGGCAAGGCCCCTCAAGTTATGCACCTTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGATCCAGAAAATGCAGGACTCCCAGGGGTATATTCTCAATACCGTTCTGGCTCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTCGGTGCTGTCTGTCGTTTTCACCATCCACGTGAGAGGACGATTCCTGCCCCTGATTGTGTTTTGAGTCCCCTTGGCCTTCCTTTGCGTCCTGGAGAACCACTTTGTGTATTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGACCATCCAATGGGAATCTTCACCTATAATGTATCTGCATCACCTTTAGCTGAAGCCGCAGGACGGCGTCTGCTAGGTTCTTCGTCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGCTCAGTAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCGAATCCTTCCGGTGATGATGACATTGATGATGAGGGATAA
Protein sequence

>Msa1028860

MEYDAIPQEAMWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPSNMVLPMRGSPVYPTVQSPTTAGQQSYAAGITNWSTSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSHQGDPENAGLPGVYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLAEAAGRRLLGSSSGTAALSLSSEGLVESGSVKPRRLSLSETRPNPSGDDDIDDEG*