AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605160 MtrunA17_Chr4g0034311 90.107 374 14 2 1 374 1 351 0.0 668
Msa0605160 MtrunA17_Chr2g0305541 93.714 175 9 1 200 374 1 173 1.88e-116 335
Msa0605160 MtrunA17_Chr2g0305541 74.093 193 22 4 1 192 1 166 2.38e-90 269
Msa0605160 MtrunA17_Chr2g0305551 81.218 197 15 1 1 197 1 175 1.00e-107 313
Msa0605160 MtrunA17_Chr2g0305551 87.117 163 18 2 200 362 8 167 6.83e-98 288
Msa0605160 MtrunA17_Chr4g0034301 82.550 149 26 0 208 356 9 157 1.69e-84 253
Msa0605160 MtrunA17_Chr4g0034301 70.175 171 29 1 14 184 9 157 5.69e-78 237
Msa0605160 MtrunA17_Chr1g0197501 49.333 150 75 1 207 355 22 171 4.19e-37 132
Msa0605160 MtrunA17_Chr1g0197501 43.605 172 74 2 13 183 22 171 2.37e-32 119
Msa0605160 MtrunA17_Chr5g0417631 50.000 148 70 2 208 355 3 146 1.38e-36 130
Msa0605160 MtrunA17_Chr5g0417631 43.605 172 71 3 12 183 1 146 1.35e-32 119
Msa0605160 MtrunA17_Chr5g0435991 47.297 148 74 2 208 355 3 146 1.81e-36 129
Msa0605160 MtrunA17_Chr5g0435991 41.279 172 75 3 12 183 1 146 7.00e-33 120
Msa0605160 MtrunA17_Chr1g0148751 50.000 148 69 3 208 355 3 145 1.88e-36 129
Msa0605160 MtrunA17_Chr1g0148751 43.605 172 70 4 12 183 1 145 1.76e-32 119
Msa0605160 MtrunA17_Chr5g0435621 47.973 148 73 2 208 355 3 146 1.89e-36 129
Msa0605160 MtrunA17_Chr5g0435621 41.860 172 74 3 12 183 1 146 2.22e-32 119
Msa0605160 MtrunA17_Chr5g0435981 49.324 148 70 3 208 355 3 145 1.35e-35 127
Msa0605160 MtrunA17_Chr5g0435981 43.023 172 71 4 12 183 1 145 1.24e-31 117
Msa0605160 MtrunA17_Chr5g0427351 47.651 149 74 2 207 355 2 146 5.58e-35 125
Msa0605160 MtrunA17_Chr5g0427351 40.698 172 76 3 12 183 1 146 2.52e-30 113
Msa0605160 MtrunA17_Chr1g0170851 46.980 149 76 2 207 355 2 147 2.70e-34 124
Msa0605160 MtrunA17_Chr1g0170851 41.279 172 76 3 12 183 1 147 1.80e-30 114
Msa0605160 MtrunA17_Chr1g0197531 46.622 148 76 1 208 355 3 147 1.51e-33 122
Msa0605160 MtrunA17_Chr1g0197531 41.176 170 75 2 14 183 3 147 6.48e-30 112
Msa0605160 MtrunA17_Chr5g0435611 47.333 150 73 3 208 356 3 147 1.54e-33 122
Msa0605160 MtrunA17_Chr5g0435611 41.860 172 72 4 14 184 3 147 1.47e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605160 AT2G16060.1 70.513 156 46 0 200 355 1 156 3.14e-75 230
Msa0605160 AT2G16060.1 61.714 175 45 1 9 183 4 156 6.76e-71 219
Msa0605160 AT3G10520.1 56.667 150 65 0 208 357 6 155 3.57e-52 171
Msa0605160 AT3G10520.1 46.591 176 72 1 10 185 2 155 2.08e-47 159

Find 78 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTTCTGGATTGGAAATT+TGG 0.151390 4_2:-50911719 Msa0605160:three_prime_UTR
AAAATTTAAAAGCATGTTAT+TGG 0.155551 4_2:-50911648 Msa0605160:three_prime_UTR
TTTAAAATTACTTATCAAAT+TGG 0.196171 4_2:+50914065 None:intergenic
TGTTATTGGTGTTATTATTA+AGG 0.208825 4_2:-50911634 Msa0605160:three_prime_UTR
ATTATGACATGTTAGAATTC+TGG 0.211312 4_2:-50912836 Msa0605160:intron
GGTAACAAAACAAGCTCTTT+TGG 0.251442 4_2:-50914217 Msa0605160:CDS
GGTAACAAAGCAAGCCCTTT+TGG 0.262800 4_2:-50912180 Msa0605160:CDS
TCAACTTCAATAAGCTTGTT+TGG 0.263429 4_2:-50911960 Msa0605160:three_prime_UTR
CCAGAACTGATCAAAATAAA+TGG 0.269045 4_2:+50911732 None:intergenic
ATTAGTTAGGCTTAAATTGT+AGG 0.299094 4_2:+50911583 None:intergenic
AATTCTGATTGTTAGAATAC+TGG 0.324830 4_2:-50914757 Msa0605160:CDS
GATTTATATATGTTGCTATT+GGG 0.329197 4_2:-50911906 Msa0605160:three_prime_UTR
GTCTAATTAAGAGGAGGGTT+TGG 0.334332 4_2:+50912013 None:intergenic
AATGAAAACATTTGCTTAGC+TGG 0.335061 4_2:+50914723 None:intergenic
CAACTTCAATAAGCTTGTTT+GGG 0.339010 4_2:-50911959 Msa0605160:three_prime_UTR
GAAAGATTCAAATGTTCCTT+TGG 0.344016 4_2:-50914697 Msa0605160:CDS
ATAGCTAGAGACCACATTTC+AGG 0.345376 4_2:+50914174 None:intergenic
TGATTTATATATGTTGCTAT+TGG 0.349197 4_2:-50911907 Msa0605160:three_prime_UTR
GTTATTGGTGTTATTATTAA+GGG 0.353418 4_2:-50911633 Msa0605160:three_prime_UTR
AAAAGATTCAAATGTTCCTT+TGG 0.354441 4_2:-50912776 Msa0605160:CDS
CATCTCAGCTTTGATGGCAT+TGG 0.372687 4_2:+50912079 None:intergenic
GCCGTTTCTGAGATCACTTA+TGG 0.378144 4_2:-50911611 Msa0605160:three_prime_UTR
GAATCAAATTTGAAGAAGTT+AGG 0.398518 4_2:-50914389 Msa0605160:CDS
AATGAGAACAATTGCTTAGC+TGG 0.398732 4_2:+50912802 None:intergenic
GGTGCCACTCATTTCAAAAC+TGG 0.400143 4_2:-50912509 Msa0605160:CDS
GGTGCCACTCATTTCAAAAC+TGG 0.400143 4_2:-50914368 Msa0605160:CDS
TGAGATGTGGTCACCGGCTA+TGG 0.409008 4_2:-50912135 Msa0605160:CDS
GAAAGAAGCTCATGATCAAC+TGG 0.424877 4_2:-50914094 Msa0605160:CDS
ATAGCATGTGGCTTGAGCTT+AGG 0.435870 4_2:+50914666 None:intergenic
TGGCATTGGCCAGCTGATCA+TGG 0.436974 4_2:+50912093 None:intergenic
GAATCAAACTTGAAGAAGTT+AGG 0.452597 4_2:-50912530 Msa0605160:CDS
ATGGCATGAGGCTTGAGCTT+AGG 0.456443 4_2:+50912745 None:intergenic
CATTTCAGCTTTGATAGCAT+TGG 0.458163 4_2:+50914116 None:intergenic
AATCATGAGTGATACTCAAT+TGG 0.458460 4_2:+50914781 None:intergenic
TTTGGATTTATCTTCAACAT+TGG 0.461851 4_2:+50912031 None:intergenic
ATTTATATATGTTGCTATTG+GGG 0.462800 4_2:-50911905 Msa0605160:three_prime_UTR
CTCTCTTATAACACATAACA+TGG 0.470590 4_2:-50915093 Msa0605160:exon
TGTTTATTAAATTGTGGTGG+TGG 0.483667 4_2:+50915125 None:intergenic
AGAAACATAGTCTAATTAAG+AGG 0.496520 4_2:+50912004 None:intergenic
GCAGTTCAATTGAGAAATGC+TGG 0.500173 4_2:-50912569 Msa0605160:CDS
GGCAGAAGCTCATGATCAGC+TGG 0.502848 4_2:-50914139 Msa0605160:CDS
AATTGTGGTGGTGGTGGCAA+TGG 0.504814 4_2:+50915134 None:intergenic
TGCCATGTCTGTCTTTCTCA+TGG 0.508395 4_2:-50912728 Msa0605160:intron
GCAGTTCAATTGCGTAAGGC+TGG 0.515135 4_2:-50914428 Msa0605160:CDS
GGGAGAAGCCCATGATCAGC+TGG 0.521253 4_2:-50912102 Msa0605160:CDS
TCCATAAGTGATCTCAGAAA+CGG 0.524930 4_2:+50911610 None:intergenic
CACCGGCTATGGAAAATGCA+TGG 0.527671 4_2:-50912124 Msa0605160:CDS
GGCATTGGCCAGCTGATCAT+GGG 0.529199 4_2:+50912094 None:intergenic
TGCTATGTCTGTCTTTCTCA+TGG 0.531096 4_2:-50914649 Msa0605160:intron
ATAGCCGGTGACCACATCTC+AGG 0.534181 4_2:+50912137 None:intergenic
AAGCTCTAGTCGTGAAGTCA+TGG 0.537512 4_2:-50912990 Msa0605160:CDS
ACCGGCTATGGAAAATGCAT+GGG 0.537843 4_2:-50912123 Msa0605160:CDS
TTATTAAATTGTGGTGGTGG+TGG 0.538141 4_2:+50915128 None:intergenic
AAGCTCTAGTGCTAAAGTCA+TGG 0.546385 4_2:-50915019 Msa0605160:CDS
TTCTTAATCAGCAGTTAACA+TGG 0.559415 4_2:-50913049 Msa0605160:intron
GAGAACAAGAAAACTGTGGA+TGG 0.560503 4_2:-50915068 Msa0605160:CDS
AATGCAATCAAGAACAACTC+TGG 0.563556 4_2:-50912967 Msa0605160:CDS
CTTATTGAAGTTGAGAGCAA+AGG 0.567872 4_2:+50911969 None:intergenic
AACATAGTCTAATTAAGAGG+AGG 0.573065 4_2:+50912007 None:intergenic
ACATAGTCTAATTAAGAGGA+GGG 0.576395 4_2:+50912008 None:intergenic
GAAAACATTTGCTTAGCTGG+TGG 0.587466 4_2:+50914726 None:intergenic
ATCAGCAGTTCAATTGCGTA+AGG 0.590365 4_2:-50914432 Msa0605160:CDS
AATATAAATAAATTCTACAA+TGG 0.593261 4_2:+50911784 None:intergenic
AATGTTTGTTTATTAAATTG+TGG 0.595500 4_2:+50915119 None:intergenic
CTATAATTTAAAAGAAACGC+AGG 0.608306 4_2:+50911691 None:intergenic
ATTACCTGAGATGTGGTCAC+CGG 0.617794 4_2:-50912141 Msa0605160:CDS
GAGAACAATTGCTTAGCTGG+TGG 0.618028 4_2:+50912805 None:intergenic
GTTTGTTTATTAAATTGTGG+TGG 0.618956 4_2:+50915122 None:intergenic
AAGAAGCATTACCTGAGATG+TGG 0.630182 4_2:-50912148 Msa0605160:CDS
AGGAAGCAATACCTGAAATG+TGG 0.633362 4_2:-50914185 Msa0605160:CDS
GTTAACATGGAAGAGAACAC+AGG 0.664637 4_2:-50913036 Msa0605160:CDS
AGAAAGACAGACATGGCATG+AGG 0.665594 4_2:+50912733 None:intergenic
GGAAGAGAACAAGAAAACTG+TGG 0.684809 4_2:-50915072 Msa0605160:CDS
AGAAAGACAGACATAGCATG+TGG 0.690738 4_2:+50914654 None:intergenic
CCGGCTATGGAAAATGCATG+GGG 0.691095 4_2:-50912122 Msa0605160:CDS
TAATTTAAAAGAAACGCAGG+AGG 0.695858 4_2:+50911694 None:intergenic
CACAGGCAGTTGTTTCACAG+AGG 0.716668 4_2:-50913019 Msa0605160:CDS
TACCATGAGAAAGACAGACA+TGG 0.729739 4_2:+50912726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTCAAAAAAAAAAAAAAAAA+AGG - chr4_2:50911915-50911934 Msa0605160:three_prime_UTR 10.0%
!!! TTATTATTTCATATTTGTTA+AGG - chr4_2:50912535-50912554 Msa0605160:CDS 10.0%
!!! TTTAAAATTACTTATCAAAT+TGG + chr4_2:50912711-50912730 None:intergenic 10.0%
!!! ATAAAAAATTTTTATGGTTT+TGG + chr4_2:50913152-50913171 None:intergenic 10.0%
!!! GTCTATATAAAAAATTTTTA+TGG + chr4_2:50913158-50913177 None:intergenic 10.0%
!!! ATTAATTTCATTTTTCATTT+AGG - chr4_2:50913863-50913882 Msa0605160:intron 10.0%
!! AATATAAATAAATTCTACAA+TGG + chr4_2:50914992-50915011 None:intergenic 10.0%
!!! TTTCTTTTAAATTATAGAAT+AGG - chr4_2:50915088-50915107 Msa0605160:exon 10.0%
!! AATGTTTGTTTATTAAATTG+TGG + chr4_2:50911657-50911676 None:intergenic 15.0%
!!! AGACATTTTTTTTTTTTTGA+AGG - chr4_2:50911943-50911962 Msa0605160:three_prime_UTR 15.0%
!!! TTTTTTTTTTTGAAGGAAAA+AGG - chr4_2:50911950-50911969 Msa0605160:three_prime_UTR 15.0%
!!! TTTTTCTAATTTAAGTCATA+AGG + chr4_2:50912202-50912221 None:intergenic 15.0%
!!! TATCCAATTTTTATTATAGT+CGG - chr4_2:50912853-50912872 Msa0605160:intron 15.0%
!! GTAATTAATCAATAAACAAA+TGG + chr4_2:50914094-50914113 None:intergenic 15.0%
!!! GAGTTTAATCTTTTTAATTA+TGG - chr4_2:50914487-50914506 Msa0605160:intron 15.0%
!! TTTATATTATTCAATGATCT+AGG + chr4_2:50914962-50914981 None:intergenic 15.0%
!!! AAAATTTAAAAGCATGTTAT+TGG - chr4_2:50915125-50915144 Msa0605160:five_prime_UTR 15.0%
!!! TAATTAATTTTCAGCTTGTA+AGG - chr4_2:50911879-50911898 Msa0605160:intron 20.0%
!! TCATCTAATTAGTATAATTG+AGG - chr4_2:50912165-50912184 Msa0605160:CDS 20.0%
!! TTCATACTAGTAATATTGAA+AGG + chr4_2:50912467-50912486 None:intergenic 20.0%
!!! AAAATTTTTATGGTTTTGGT+TGG + chr4_2:50913148-50913167 None:intergenic 20.0%
!!! AATATGTATTTTTAAGCATG+TGG - chr4_2:50913294-50913313 Msa0605160:intron 20.0%
!!! ATATGTATTTTTAAGCATGT+GGG - chr4_2:50913295-50913314 Msa0605160:intron 20.0%
!!! ACTTGAATGGATATAAATTT+TGG + chr4_2:50913335-50913354 None:intergenic 20.0%
!!! TTTTCTTTTTAAGTTTTTGC+AGG + chr4_2:50913478-50913497 None:intergenic 20.0%
!!! TATTAATACTCCTAATTTGT+TGG - chr4_2:50913544-50913563 Msa0605160:intron 20.0%
!! ATTAAGAATAATAGTGACAA+TGG + chr4_2:50913712-50913731 None:intergenic 20.0%
!! AACTCATATTGTGTATATTT+GGG + chr4_2:50914472-50914491 None:intergenic 20.0%
!! AAACTCATATTGTGTATATT+TGG + chr4_2:50914473-50914492 None:intergenic 20.0%
!!! TTTTATTGTTTCGTTATGTA+AGG - chr4_2:50914572-50914591 Msa0605160:intron 20.0%
!! TGATTTATATATGTTGCTAT+TGG - chr4_2:50914866-50914885 Msa0605160:intron 20.0%
!!! GATTTATATATGTTGCTATT+GGG - chr4_2:50914867-50914886 Msa0605160:intron 20.0%
!!! ATTTATATATGTTGCTATTG+GGG - chr4_2:50914868-50914887 Msa0605160:intron 20.0%
!!! TGTTATTGGTGTTATTATTA+AGG - chr4_2:50915139-50915158 Msa0605160:five_prime_UTR 20.0%
!!! GTTATTGGTGTTATTATTAA+GGG - chr4_2:50915140-50915159 Msa0605160:five_prime_UTR 20.0%
!!! ATTGTTGTTTTGCTCTATTA+CGG + chr4_2:50911611-50911630 None:intergenic 25.0%
! GTTTGTTTATTAAATTGTGG+TGG + chr4_2:50911654-50911673 None:intergenic 25.0%
! AATGCAATGAAGAAAAATTC+TGG - chr4_2:50911777-50911796 Msa0605160:three_prime_UTR 25.0%
! ATGCAATGAAGAAAAATTCT+GGG - chr4_2:50911778-50911797 Msa0605160:three_prime_UTR 25.0%
! AATTCTGATTGTTAGAATAC+TGG - chr4_2:50912016-50912035 Msa0605160:exon 25.0%
! CATTACTTGTATCTCTTATT+TGG - chr4_2:50912279-50912298 Msa0605160:intron 25.0%
! GAATCAAATTTGAAGAAGTT+AGG - chr4_2:50912384-50912403 Msa0605160:intron 25.0%
!!! TTACATTAGTCTTCTACAAA+AGG + chr4_2:50912503-50912522 None:intergenic 25.0%
!! ACACCGACTATAATAAAAAT+TGG + chr4_2:50912859-50912878 None:intergenic 25.0%
!! GTGTTTTTCTTTGGATTTAA+CGG + chr4_2:50912956-50912975 None:intergenic 25.0%
!! AGATGTGTTGTATAATCTTT+TGG + chr4_2:50913125-50913144 None:intergenic 25.0%
!! TAAATTTTGGACACAAGATT+TGG + chr4_2:50913322-50913341 None:intergenic 25.0%
! CACACTTTAACCAAAATATA+TGG - chr4_2:50913433-50913452 Msa0605160:intron 25.0%
!! ACATACACTACCATATATTT+TGG + chr4_2:50913446-50913465 None:intergenic 25.0%
!! ATTCACTCATTGATTAAAGA+TGG + chr4_2:50913627-50913646 None:intergenic 25.0%
! ATTATGACATGTTAGAATTC+TGG - chr4_2:50913937-50913956 Msa0605160:intron 25.0%
! AAAAGATTCAAATGTTCCTT+TGG - chr4_2:50913997-50914016 Msa0605160:intron 25.0%
! GTAATACTAACATACTACTA+TGG - chr4_2:50914309-50914328 Msa0605160:intron 25.0%
!! GTGTATATTTGAAATCATGA+TGG - chr4_2:50914414-50914433 Msa0605160:CDS 25.0%
! TTTGGATTTATCTTCAACAT+TGG + chr4_2:50914745-50914764 None:intergenic 25.0%
! AGAAACATAGTCTAATTAAG+AGG + chr4_2:50914772-50914791 None:intergenic 25.0%
! CTATAATTTAAAAGAAACGC+AGG + chr4_2:50915085-50915104 None:intergenic 25.0%
TGTTTATTAAATTGTGGTGG+TGG + chr4_2:50911651-50911670 None:intergenic 30.0%
CTCTCTTATAACACATAACA+TGG - chr4_2:50911680-50911699 Msa0605160:three_prime_UTR 30.0%
TGCAATGAAGAAAAATTCTG+GGG - chr4_2:50911779-50911798 Msa0605160:three_prime_UTR 30.0%
AATCATGAGTGATACTCAAT+TGG + chr4_2:50911995-50912014 None:intergenic 30.0%
AATGAAAACATTTGCTTAGC+TGG + chr4_2:50912053-50912072 None:intergenic 30.0%
GAAAGATTCAAATGTTCCTT+TGG - chr4_2:50912076-50912095 Msa0605160:CDS 30.0%
! TGTAAAAGATGAGCATTTTG+AGG - chr4_2:50912428-50912447 Msa0605160:intron 30.0%
TCTAGCTATGAAAAATGCAT+GGG - chr4_2:50912613-50912632 Msa0605160:intron 30.0%
TACTAATAGTACAAGTTACG+AGG + chr4_2:50912759-50912778 None:intergenic 30.0%
! TCGTAACTTGTACTATTAGT+AGG - chr4_2:50912758-50912777 Msa0605160:CDS 30.0%
! CGTAACTTGTACTATTAGTA+GGG - chr4_2:50912759-50912778 Msa0605160:CDS 30.0%
CAATGTCAAGAAAACTTACA+AGG - chr4_2:50912986-50913005 Msa0605160:CDS 30.0%
! TTTTGGTCGTTATGAATCAT+TGG + chr4_2:50913108-50913127 None:intergenic 30.0%
TCTACAGGAAAATACTTGAA+TGG + chr4_2:50913348-50913367 None:intergenic 30.0%
ATATGAGAGATGTTATCTAC+AGG + chr4_2:50913363-50913382 None:intergenic 30.0%
!!! TGTGCTTTTTCCAACAAATT+AGG + chr4_2:50913557-50913576 None:intergenic 30.0%
! TCATTGATTAAAGATGGAGT+TGG + chr4_2:50913621-50913640 None:intergenic 30.0%
!! TGATTTTGTAGTTTGTGCTA+TGG + chr4_2:50913673-50913692 None:intergenic 30.0%
TTCTTAATCAGCAGTTAACA+TGG - chr4_2:50913724-50913743 Msa0605160:intron 30.0%
GAATCAAACTTGAAGAAGTT+AGG - chr4_2:50914243-50914262 Msa0605160:intron 30.0%
! TGTAAAAGATGAGCATTTTG+AGG - chr4_2:50912428-50912447 Msa0605160:intron 30.0%
! GTTCTTCTAGAAAAGTAGTA+CGG + chr4_2:50914528-50914547 None:intergenic 30.0%
! TTCTTTTATGGTCTCCAAAA+GGG + chr4_2:50914610-50914629 None:intergenic 30.0%
!!! TTTTTTCATCTCAGCTTTGA+TGG + chr4_2:50914703-50914722 None:intergenic 30.0%
ACATAGTCTAATTAAGAGGA+GGG + chr4_2:50914768-50914787 None:intergenic 30.0%
AACATAGTCTAATTAAGAGG+AGG + chr4_2:50914769-50914788 None:intergenic 30.0%
! TCAACTTCAATAAGCTTGTT+TGG - chr4_2:50914813-50914832 Msa0605160:intron 30.0%
! CAACTTCAATAAGCTTGTTT+GGG - chr4_2:50914814-50914833 Msa0605160:intron 30.0%
!! TGGGGTTTGATAAGTTTTAA+AGG - chr4_2:50914886-50914905 Msa0605160:intron 30.0%
CCAGAACTGATCAAAATAAA+TGG + chr4_2:50915044-50915063 None:intergenic 30.0%
!!! CCATTTATTTTGATCAGTTC+TGG - chr4_2:50915041-50915060 Msa0605160:CDS 30.0%
!!! TATTTTGATCAGTTCTGGAT+TGG - chr4_2:50915046-50915065 Msa0605160:CDS 30.0%
TAATTTAAAAGAAACGCAGG+AGG + chr4_2:50915082-50915101 None:intergenic 30.0%
!! TTATTAAATTGTGGTGGTGG+TGG + chr4_2:50911648-50911667 None:intergenic 35.0%
TTGTGAAAAAGTTGAGACTC+AGG + chr4_2:50911806-50911825 None:intergenic 35.0%
!!! TACACCAGTTTTGAAATGAG+TGG + chr4_2:50912412-50912431 None:intergenic 35.0%
! GGTAACAAAACAAGCTCTTT+TGG - chr4_2:50912556-50912575 Msa0605160:CDS 35.0%
CTCTAGCTATGAAAAATGCA+TGG - chr4_2:50912612-50912631 Msa0605160:intron 35.0%
! CATTTCAGCTTTGATAGCAT+TGG + chr4_2:50912660-50912679 None:intergenic 35.0%
TTGTTGATATCAAGTGTGAG+TGG + chr4_2:50912890-50912909 None:intergenic 35.0%
!!! AGTCAAGAGGTGTTTTTCTT+TGG + chr4_2:50912965-50912984 None:intergenic 35.0%
TTCTTGACATTGTAGTCAAG+AGG + chr4_2:50912978-50912997 None:intergenic 35.0%
TTACAAGGATCAAATAGAGC+AGG - chr4_2:50913001-50913020 Msa0605160:CDS 35.0%
! CTCTTCACCAAGTTGAATTA+GGG - chr4_2:50913035-50913054 Msa0605160:CDS 35.0%
ATAAGAGCCCTAATTCAACT+TGG + chr4_2:50913045-50913064 None:intergenic 35.0%
ATTGCAAAATAACTCCCCAT+TGG - chr4_2:50913586-50913605 Msa0605160:intron 35.0%
AATGCAATCAAGAACAACTC+TGG - chr4_2:50913806-50913825 Msa0605160:intron 35.0%
AATGAGAACAATTGCTTAGC+TGG + chr4_2:50913974-50913993 None:intergenic 35.0%
!!! TACACCAGTTTTGAAATGAG+TGG + chr4_2:50912412-50912431 None:intergenic 35.0%
ACTATGGTTGACACAATGTT+AGG - chr4_2:50914325-50914344 Msa0605160:intron 35.0%
AAAAGACTTGTACATTCGCA+CGG + chr4_2:50914363-50914382 None:intergenic 35.0%
! ATTGTGTATATTTGGGTTCG+TGG + chr4_2:50914465-50914484 None:intergenic 35.0%
! CTTCTTTTATGGTCTCCAAA+AGG + chr4_2:50914611-50914630 None:intergenic 35.0%
! CTCAGGTAATGCTTCTTTTA+TGG + chr4_2:50914622-50914641 None:intergenic 35.0%
CTTATTGAAGTTGAGAGCAA+AGG + chr4_2:50914807-50914826 None:intergenic 35.0%
!! TCAGTTCTGGATTGGAAATT+TGG - chr4_2:50915054-50915073 Msa0605160:CDS 35.0%
TCCATAAGTGATCTCAGAAA+CGG + chr4_2:50915166-50915185 None:intergenic 35.0%
GGAAGAGAACAAGAAAACTG+TGG - chr4_2:50911701-50911720 Msa0605160:three_prime_UTR 40.0%
GAGAACAAGAAAACTGTGGA+TGG - chr4_2:50911705-50911724 Msa0605160:three_prime_UTR 40.0%
! AAGCTCTAGTGCTAAAGTCA+TGG - chr4_2:50911754-50911773 Msa0605160:three_prime_UTR 40.0%
GAAAACATTTGCTTAGCTGG+TGG + chr4_2:50912050-50912069 None:intergenic 40.0%
! AGCTTAGGATTTTGCTCCAA+AGG + chr4_2:50912095-50912114 None:intergenic 40.0%
AGAAAGACAGACATAGCATG+TGG + chr4_2:50912122-50912141 None:intergenic 40.0%
TGCTATGTCTGTCTTTCTCA+TGG - chr4_2:50912124-50912143 Msa0605160:CDS 40.0%
ATCAGCAGTTCAATTGCGTA+AGG - chr4_2:50912341-50912360 Msa0605160:intron 40.0%
!! AGCTCTTTTGGAGACAATAG+AGG - chr4_2:50912568-50912587 Msa0605160:CDS 40.0%
AGGAAGCAATACCTGAAATG+TGG - chr4_2:50912588-50912607 Msa0605160:intron 40.0%
ATAGCTAGAGACCACATTTC+AGG + chr4_2:50912602-50912621 None:intergenic 40.0%
GAAAGAAGCTCATGATCAAC+TGG - chr4_2:50912679-50912698 Msa0605160:intron 40.0%
TTAACGGCAATGCAAGTGTA+GGG + chr4_2:50912940-50912959 None:intergenic 40.0%
TTTAACGGCAATGCAAGTGT+AGG + chr4_2:50912941-50912960 None:intergenic 40.0%
! GCTCTTCACCAAGTTGAATT+AGG - chr4_2:50913034-50913053 Msa0605160:CDS 40.0%
GACCACAAACAATTCTTGTG+TGG - chr4_2:50913175-50913194 Msa0605160:intron 40.0%
GACCACACAAGAATTGTTTG+TGG + chr4_2:50913180-50913199 None:intergenic 40.0%
CTTGTGTGGTCACAATACTT+TGG - chr4_2:50913189-50913208 Msa0605160:intron 40.0%
GTTAACATGGAAGAGAACAC+AGG - chr4_2:50913737-50913756 Msa0605160:intron 40.0%
! AGCTTAGGATTTTGCTCCAA+AGG + chr4_2:50912095-50912114 None:intergenic 40.0%
TACCATGAGAAAGACAGACA+TGG + chr4_2:50912129-50912148 None:intergenic 40.0%
TGGATGCTAAGTGTTAAGCA+AGG + chr4_2:50914074-50914093 None:intergenic 40.0%
GCAGTTCAATTGAGAAATGC+TGG - chr4_2:50914204-50914223 Msa0605160:CDS 40.0%
!! AAGAAGCATTACCTGAGATG+TGG - chr4_2:50914625-50914644 Msa0605160:intron 40.0%
GTCTAATTAAGAGGAGGGTT+TGG + chr4_2:50914763-50914782 None:intergenic 40.0%
ATAGCATGTGGCTTGAGCTT+AGG + chr4_2:50912110-50912129 None:intergenic 45.0%
!! GGTGCCACTCATTTCAAAAC+TGG - chr4_2:50912405-50912424 Msa0605160:intron 45.0%
! ATCGAAAAGAGAGAGCGTGT+AGG - chr4_2:50912811-50912830 Msa0605160:CDS 45.0%
!! TTAGAGTCCATAGAAGCGTC+AGG - chr4_2:50913070-50913089 Msa0605160:intron 45.0%
! AAGCTCTAGTCGTGAAGTCA+TGG - chr4_2:50913783-50913802 Msa0605160:intron 45.0%
GAGAACAATTGCTTAGCTGG+TGG + chr4_2:50913971-50913990 None:intergenic 45.0%
AGAAAGACAGACATGGCATG+AGG + chr4_2:50914043-50914062 None:intergenic 45.0%
TGCCATGTCTGTCTTTCTCA+TGG - chr4_2:50914045-50914064 Msa0605160:intron 45.0%
!! GGTGCCACTCATTTCAAAAC+TGG - chr4_2:50912405-50912424 Msa0605160:intron 45.0%
! GGTAACAAAGCAAGCCCTTT+TGG - chr4_2:50914593-50914612 Msa0605160:intron 45.0%
ATTACCTGAGATGTGGTCAC+CGG - chr4_2:50914632-50914651 Msa0605160:intron 45.0%
ACCGGCTATGGAAAATGCAT+GGG - chr4_2:50914650-50914669 Msa0605160:CDS 45.0%
! CATCTCAGCTTTGATGGCAT+TGG + chr4_2:50914697-50914716 None:intergenic 45.0%
!! GCCGTTTCTGAGATCACTTA+TGG - chr4_2:50915162-50915181 Msa0605160:five_prime_UTR 45.0%
!! AAATTAATTAATATAATTGA+CGG + chr4_2:50911869-50911888 None:intergenic 5.0%
!!! TAAGTAATTTTAAATATAAT+TGG - chr4_2:50912717-50912736 Msa0605160:intron 5.0%
!!! ATTTATATTCATTTTATTAT+AGG - chr4_2:50915003-50915022 Msa0605160:CDS 5.0%
!! AATTGTGGTGGTGGTGGCAA+TGG + chr4_2:50911642-50911661 None:intergenic 50.0%
GCAGTTCAATTGCGTAAGGC+TGG - chr4_2:50912345-50912364 Msa0605160:intron 50.0%
TAGGGTAGCATGCTCTGCAA+TGG - chr4_2:50912777-50912796 Msa0605160:CDS 50.0%
GGCAATGCAAGTGTAGGGTA+TGG + chr4_2:50912935-50912954 None:intergenic 50.0%
TGTTGCTCCTGACGCTTCTA+TGG + chr4_2:50913080-50913099 None:intergenic 50.0%
! AGTTGGCTCTTCGTGCCAAT+GGG + chr4_2:50913604-50913623 None:intergenic 50.0%
! CACAGGCAGTTGTTTCACAG+AGG - chr4_2:50913754-50913773 Msa0605160:intron 50.0%
ATGGCATGAGGCTTGAGCTT+AGG + chr4_2:50914031-50914050 None:intergenic 50.0%
TGTACATTCGCACGGATGCA+CGG + chr4_2:50914355-50914374 None:intergenic 50.0%
! CACCGGCTATGGAAAATGCA+TGG - chr4_2:50914649-50914668 Msa0605160:intron 50.0%
! CCCCATGCATTTTCCATAGC+CGG + chr4_2:50914654-50914673 None:intergenic 50.0%
CCGGCTATGGAAAATGCATG+GGG - chr4_2:50914651-50914670 Msa0605160:CDS 50.0%
GGCAGAAGCTCATGATCAGC+TGG - chr4_2:50912634-50912653 Msa0605160:intron 55.0%
! GTTGGCTCTTCGTGCCAATG+GGG + chr4_2:50913603-50913622 None:intergenic 55.0%
! GAGTTGGCTCTTCGTGCCAA+TGG + chr4_2:50913605-50913624 None:intergenic 55.0%
ATAGCCGGTGACCACATCTC+AGG + chr4_2:50914639-50914658 None:intergenic 55.0%
! TGAGATGTGGTCACCGGCTA+TGG - chr4_2:50914638-50914657 Msa0605160:intron 55.0%
!! GGCATTGGCCAGCTGATCAT+GGG + chr4_2:50914682-50914701 None:intergenic 55.0%
!! TGGCATTGGCCAGCTGATCA+TGG + chr4_2:50914683-50914702 None:intergenic 55.0%
GGGAGAAGCCCATGATCAGC+TGG - chr4_2:50914671-50914690 Msa0605160:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50911590 50915205 50911590 ID=Msa0605160;Name=Msa0605160
chr4_2 mRNA 50911590 50915205 50911590 ID=Msa0605160-mRNA-1;Parent=Msa0605160;Name=Msa0605160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=109|0.75|0.77|1|0.87|0.77|9|360|374
chr4_2 exon 50911590 50911831 50911590 ID=Msa0605160-mRNA-1:exon:12153;Parent=Msa0605160-mRNA-1
chr4_2 exon 50911901 50912201 50911901 ID=Msa0605160-mRNA-1:exon:12152;Parent=Msa0605160-mRNA-1
chr4_2 exon 50912487 50912603 50912487 ID=Msa0605160-mRNA-1:exon:12151;Parent=Msa0605160-mRNA-1
chr4_2 exon 50912729 50912843 50912729 ID=Msa0605160-mRNA-1:exon:12150;Parent=Msa0605160-mRNA-1
chr4_2 exon 50912940 50913060 50912940 ID=Msa0605160-mRNA-1:exon:12149;Parent=Msa0605160-mRNA-1
chr4_2 exon 50914076 50914238 50914076 ID=Msa0605160-mRNA-1:exon:12148;Parent=Msa0605160-mRNA-1
chr4_2 exon 50914346 50914462 50914346 ID=Msa0605160-mRNA-1:exon:12147;Parent=Msa0605160-mRNA-1
chr4_2 exon 50914650 50914830 50914650 ID=Msa0605160-mRNA-1:exon:12146;Parent=Msa0605160-mRNA-1
chr4_2 exon 50914969 50915205 50914969 ID=Msa0605160-mRNA-1:exon:12145;Parent=Msa0605160-mRNA-1
chr4_2 five_prime_UTR 50915097 50915205 50915097 ID=Msa0605160-mRNA-1:five_prime_utr;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50914969 50915096 50914969 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50914650 50914830 50914650 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50914346 50914462 50914346 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50914076 50914238 50914076 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50912940 50913060 50912940 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50912729 50912843 50912729 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50912487 50912603 50912487 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 CDS 50912019 50912201 50912019 ID=Msa0605160-mRNA-1:cds;Parent=Msa0605160-mRNA-1
chr4_2 three_prime_UTR 50911901 50912018 50911901 ID=Msa0605160-mRNA-1:three_prime_utr;Parent=Msa0605160-mRNA-1
chr4_2 three_prime_UTR 50911590 50911831 50911590 ID=Msa0605160-mRNA-1:three_prime_utr;Parent=Msa0605160-mRNA-1
Gene Sequence

>Msa0605160

ATGGAAGAGAACAAGAAAACTGTGGATGGAAGTGTTTGTTTCACAGAAGAGCAAGAAGCTCTAGTGCTAAAGTCATGGAATGCAATGAAGAAAAATTCTGGGGACCTGAGTCTCAACTTTTTCACAAAGAAAAAGGTAACTAGACATGTTTTTGACCAATTGAGTATCACTCATGATTTAATTCTGATTGTTAGAATACTGGAGATTGCTCCACCAGCTAAGCAAATGTTTTCATTCTTGAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCACATGCTATGTCTGTCTTTCTCATGACTTGTGAATCAGCAGTTCAATTGCGTAAGGCTGGTAAAGTCACAGTGAGAGAATCAAATTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAACAAAACAAGCTCTTTTGGAGACAATAGAGGAAGCAATACCTGAAATGTGGTCTCTAGCTATGAAAAATGCATGGGCAGAAGCTCATGATCAGCTGGCCAATGCTATCAAAGCTGAAATGAAAGAAGCTCATGATCAACTGGACAATGCCAATTTGATAACAGTTAACATGGAAGAGAACACAGGCAGTTGTTTCACAGAGGAACAAGAAGCTCTAGTCGTGAAGTCATGGAATGCAATCAAGAACAACTCTGGAGATCTGAGTCTCAAGTTTTTCAAGAAAATTCTGGAGATTGCTCCACCAGCTAAGCAATTGTTCTCATTCTTAAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCTCATGCCATGTCTGTCTTTCTCATGACATGTGAATCAGCAGTTCAATTGAGAAATGCTGGTAAAGTAACTGTTAGAGAATCAAACTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAACAAAGCAAGCCCTTTTGGAGACCATAAAAGAAGCATTACCTGAGATGTGGTCACCGGCTATGGAAAATGCATGGGGAGAAGCCCATGATCAGCTGGCCAATGCCATCAAAGCTGAGATGAAAAAAGCTGATCATGATCATCAGACCAATGTTGAAGATAAATCCAAACCCTCCTCTTAA

Protein sequence

>Msa0605160

MEENKKTVDGSVCFTEEQEALVLKSWNAMKKNSGDLSLNFFTKKKVTRHVFDQLSITHDLILIVRILEIAPPAKQMFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRKAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIEEAIPEMWSLAMKNAWAEAHDQLANAIKAEMKEAHDQLDNANLITVNMEENTGSCFTEEQEALVVKSWNAIKNNSGDLSLKFFKKILEIAPPAKQLFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRNAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIKEALPEMWSPAMENAWGEAHDQLANAIKAEMKKADHDHQTNVEDKSKPSS*