AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605040 MtrunA17_Chr4g0034311 90.107 374 14 2 1 374 1 351 0.0 668
Msa0605040 MtrunA17_Chr2g0305541 93.714 175 9 1 200 374 1 173 1.88e-116 335
Msa0605040 MtrunA17_Chr2g0305541 74.093 193 22 4 1 192 1 166 2.38e-90 269
Msa0605040 MtrunA17_Chr2g0305551 81.218 197 15 1 1 197 1 175 1.00e-107 313
Msa0605040 MtrunA17_Chr2g0305551 87.117 163 18 2 200 362 8 167 6.83e-98 288
Msa0605040 MtrunA17_Chr4g0034301 82.550 149 26 0 208 356 9 157 1.69e-84 253
Msa0605040 MtrunA17_Chr4g0034301 70.175 171 29 1 14 184 9 157 5.69e-78 237
Msa0605040 MtrunA17_Chr1g0197501 49.333 150 75 1 207 355 22 171 4.19e-37 132
Msa0605040 MtrunA17_Chr1g0197501 43.605 172 74 2 13 183 22 171 2.37e-32 119
Msa0605040 MtrunA17_Chr5g0417631 50.000 148 70 2 208 355 3 146 1.38e-36 130
Msa0605040 MtrunA17_Chr5g0417631 43.605 172 71 3 12 183 1 146 1.35e-32 119
Msa0605040 MtrunA17_Chr5g0435991 47.297 148 74 2 208 355 3 146 1.81e-36 129
Msa0605040 MtrunA17_Chr5g0435991 41.279 172 75 3 12 183 1 146 7.00e-33 120
Msa0605040 MtrunA17_Chr1g0148751 50.000 148 69 3 208 355 3 145 1.88e-36 129
Msa0605040 MtrunA17_Chr1g0148751 43.605 172 70 4 12 183 1 145 1.76e-32 119
Msa0605040 MtrunA17_Chr5g0435621 47.973 148 73 2 208 355 3 146 1.89e-36 129
Msa0605040 MtrunA17_Chr5g0435621 41.860 172 74 3 12 183 1 146 2.22e-32 119
Msa0605040 MtrunA17_Chr5g0435981 49.324 148 70 3 208 355 3 145 1.35e-35 127
Msa0605040 MtrunA17_Chr5g0435981 43.023 172 71 4 12 183 1 145 1.24e-31 117
Msa0605040 MtrunA17_Chr5g0427351 47.651 149 74 2 207 355 2 146 5.58e-35 125
Msa0605040 MtrunA17_Chr5g0427351 40.698 172 76 3 12 183 1 146 2.52e-30 113
Msa0605040 MtrunA17_Chr1g0170851 46.980 149 76 2 207 355 2 147 2.70e-34 124
Msa0605040 MtrunA17_Chr1g0170851 41.279 172 76 3 12 183 1 147 1.80e-30 114
Msa0605040 MtrunA17_Chr1g0197531 46.622 148 76 1 208 355 3 147 1.51e-33 122
Msa0605040 MtrunA17_Chr1g0197531 41.176 170 75 2 14 183 3 147 6.48e-30 112
Msa0605040 MtrunA17_Chr5g0435611 47.333 150 73 3 208 356 3 147 1.54e-33 122
Msa0605040 MtrunA17_Chr5g0435611 41.860 172 72 4 14 184 3 147 1.47e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605040 AT2G16060.1 70.513 156 46 0 200 355 1 156 3.14e-75 230
Msa0605040 AT2G16060.1 61.714 175 45 1 9 183 4 156 6.76e-71 219
Msa0605040 AT3G10520.1 56.667 150 65 0 208 357 6 155 3.57e-52 171
Msa0605040 AT3G10520.1 46.591 176 72 1 10 185 2 155 2.08e-47 159

Find 78 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTTCTGGATTGGAAATT+TGG 0.151390 4_2:-50800731 Msa0605040:three_prime_UTR
AAAATTTAAAAGCATGTTAT+TGG 0.155551 4_2:-50800660 Msa0605040:three_prime_UTR
TTTAAAATTACTTATCAAAT+TGG 0.196171 4_2:+50803082 None:intergenic
TGTTATTGGTGTTATTATTA+AGG 0.208825 4_2:-50800646 Msa0605040:three_prime_UTR
ATTATGACATGTTAGAATTC+TGG 0.211312 4_2:-50801849 Msa0605040:intron
GGTAACAAAACAAGCTCTTT+TGG 0.251442 4_2:-50803234 Msa0605040:CDS
GGTAACAAAGCAAGCCCTTT+TGG 0.262800 4_2:-50801192 Msa0605040:CDS
TCAACTTCAATAAGCTTGTT+TGG 0.263429 4_2:-50800972 Msa0605040:three_prime_UTR
CCAGAACTGATCAAAATAAA+TGG 0.269045 4_2:+50800744 None:intergenic
ATTAGTTAGGCTTAAATTGT+AGG 0.299094 4_2:+50800595 None:intergenic
AATTCTGATTGTTAGAATAC+TGG 0.324830 4_2:-50803774 Msa0605040:CDS
GATTTATATATGTTGCTATT+GGG 0.329197 4_2:-50800918 Msa0605040:three_prime_UTR
GTCTAATTAAGAGGAGGGTT+TGG 0.334332 4_2:+50801025 None:intergenic
AATGAAAACATTTGCTTAGC+TGG 0.335061 4_2:+50803740 None:intergenic
CAACTTCAATAAGCTTGTTT+GGG 0.339010 4_2:-50800971 Msa0605040:three_prime_UTR
GAAAGATTCAAATGTTCCTT+TGG 0.344016 4_2:-50803714 Msa0605040:CDS
ATAGCTAGAGACCACATTTC+AGG 0.345376 4_2:+50803191 None:intergenic
TGATTTATATATGTTGCTAT+TGG 0.349197 4_2:-50800919 Msa0605040:three_prime_UTR
GTTATTGGTGTTATTATTAA+GGG 0.353418 4_2:-50800645 Msa0605040:three_prime_UTR
AAAAGATTCAAATGTTCCTT+TGG 0.354441 4_2:-50801789 Msa0605040:CDS
CATCTCAGCTTTGATGGCAT+TGG 0.372687 4_2:+50801091 None:intergenic
GCCGTTTCTGAGATCACTTA+TGG 0.378144 4_2:-50800623 Msa0605040:three_prime_UTR
GAATCAAATTTGAAGAAGTT+AGG 0.398518 4_2:-50803406 Msa0605040:CDS
AATGAGAACAATTGCTTAGC+TGG 0.398732 4_2:+50801815 None:intergenic
GGTGCCACTCATTTCAAAAC+TGG 0.400143 4_2:-50801522 Msa0605040:CDS
GGTGCCACTCATTTCAAAAC+TGG 0.400143 4_2:-50803385 Msa0605040:CDS
TGAGATGTGGTCACCGGCTA+TGG 0.409008 4_2:-50801147 Msa0605040:CDS
GAAAGAAGCTCATGATCAAC+TGG 0.424877 4_2:-50803111 Msa0605040:CDS
ATAGCATGTGGCTTGAGCTT+AGG 0.435870 4_2:+50803683 None:intergenic
TGGCATTGGCCAGCTGATCA+TGG 0.436974 4_2:+50801105 None:intergenic
GAATCAAACTTGAAGAAGTT+AGG 0.452597 4_2:-50801543 Msa0605040:CDS
ATGGCATGAGGCTTGAGCTT+AGG 0.456443 4_2:+50801758 None:intergenic
CATTTCAGCTTTGATAGCAT+TGG 0.458163 4_2:+50803133 None:intergenic
AATCATGAGTGATACTCAAT+TGG 0.458460 4_2:+50803798 None:intergenic
TTTGGATTTATCTTCAACAT+TGG 0.461851 4_2:+50801043 None:intergenic
ATTTATATATGTTGCTATTG+GGG 0.462800 4_2:-50800917 Msa0605040:three_prime_UTR
CTCTCTTATAACACATAACA+TGG 0.470590 4_2:-50804109 Msa0605040:exon
TGTTTATTAAATTGTGGTGG+TGG 0.483667 4_2:+50804141 None:intergenic
AGAAACATAGTCTAATTAAG+AGG 0.496520 4_2:+50801016 None:intergenic
GCAGTTCAATTGAGAAATGC+TGG 0.500173 4_2:-50801582 Msa0605040:CDS
GGCAGAAGCTCATGATCAGC+TGG 0.502848 4_2:-50803156 Msa0605040:CDS
AATTGTGGTGGTGGTGGCAA+TGG 0.504814 4_2:+50804150 None:intergenic
TGCCATGTCTGTCTTTCTCA+TGG 0.508395 4_2:-50801741 Msa0605040:intron
GCAGTTCAATTGCGTAAGGC+TGG 0.515135 4_2:-50803445 Msa0605040:CDS
GGGAGAAGCCCATGATCAGC+TGG 0.521253 4_2:-50801114 Msa0605040:CDS
TCCATAAGTGATCTCAGAAA+CGG 0.524930 4_2:+50800622 None:intergenic
CACCGGCTATGGAAAATGCA+TGG 0.527671 4_2:-50801136 Msa0605040:CDS
GGCATTGGCCAGCTGATCAT+GGG 0.529199 4_2:+50801106 None:intergenic
TGCTATGTCTGTCTTTCTCA+TGG 0.531096 4_2:-50803666 Msa0605040:intron
ATAGCCGGTGACCACATCTC+AGG 0.534181 4_2:+50801149 None:intergenic
AAGCTCTAGTCGTGAAGTCA+TGG 0.537512 4_2:-50802003 Msa0605040:CDS
ACCGGCTATGGAAAATGCAT+GGG 0.537843 4_2:-50801135 Msa0605040:CDS
TTATTAAATTGTGGTGGTGG+TGG 0.538141 4_2:+50804144 None:intergenic
AAGCTCTAGTGCTAAAGTCA+TGG 0.546385 4_2:-50804035 Msa0605040:CDS
TTCTTAATCAGCAGTTAACA+TGG 0.559415 4_2:-50802062 Msa0605040:intron
GAGAACAAGAAAACTGTGGA+TGG 0.560503 4_2:-50804084 Msa0605040:CDS
AATGCAATCAAGAACAACTC+TGG 0.563556 4_2:-50801980 Msa0605040:CDS
CTTATTGAAGTTGAGAGCAA+AGG 0.567872 4_2:+50800981 None:intergenic
AACATAGTCTAATTAAGAGG+AGG 0.573065 4_2:+50801019 None:intergenic
ACATAGTCTAATTAAGAGGA+GGG 0.576395 4_2:+50801020 None:intergenic
GAAAACATTTGCTTAGCTGG+TGG 0.587466 4_2:+50803743 None:intergenic
ATCAGCAGTTCAATTGCGTA+AGG 0.590365 4_2:-50803449 Msa0605040:CDS
AATATAAATAAATTCTACAA+TGG 0.593261 4_2:+50800796 None:intergenic
AATGTTTGTTTATTAAATTG+TGG 0.595500 4_2:+50804135 None:intergenic
CTATAATTTAAAAGAAACGC+AGG 0.608306 4_2:+50800703 None:intergenic
ATTACCTGAGATGTGGTCAC+CGG 0.617794 4_2:-50801153 Msa0605040:CDS
GAGAACAATTGCTTAGCTGG+TGG 0.618028 4_2:+50801818 None:intergenic
GTTTGTTTATTAAATTGTGG+TGG 0.618956 4_2:+50804138 None:intergenic
AAGAAGCATTACCTGAGATG+TGG 0.630182 4_2:-50801160 Msa0605040:CDS
AGGAAGCAATACCTGAAATG+TGG 0.633362 4_2:-50803202 Msa0605040:CDS
GTTAACATGGAAGAGAACAC+AGG 0.664637 4_2:-50802049 Msa0605040:CDS
AGAAAGACAGACATGGCATG+AGG 0.665594 4_2:+50801746 None:intergenic
GGAAGAGAACAAGAAAACTG+TGG 0.684809 4_2:-50804088 Msa0605040:CDS
AGAAAGACAGACATAGCATG+TGG 0.690738 4_2:+50803671 None:intergenic
CCGGCTATGGAAAATGCATG+GGG 0.691095 4_2:-50801134 Msa0605040:CDS
TAATTTAAAAGAAACGCAGG+AGG 0.695858 4_2:+50800706 None:intergenic
CACAGGCAGTTGTTTCACAG+AGG 0.716668 4_2:-50802032 Msa0605040:CDS
TACCATGAGAAAGACAGACA+TGG 0.729739 4_2:+50801739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTCAAAAAAAAAAAAAAAA+AGG - chr4_2:50800926-50800945 Msa0605040:three_prime_UTR 10.0%
!!! TTATTATTTCATATTTGTTA+AGG - chr4_2:50801546-50801565 Msa0605040:CDS 10.0%
!!! TTTAAAATTACTTATCAAAT+TGG + chr4_2:50801722-50801741 None:intergenic 10.0%
!!! TAAAAAATATTTTATGGTTT+TGG + chr4_2:50802163-50802182 None:intergenic 10.0%
!!! ATTAATTTCATTTTTCATTT+AGG - chr4_2:50802878-50802897 Msa0605040:intron 10.0%
!! AATATAAATAAATTCTACAA+TGG + chr4_2:50804008-50804027 None:intergenic 10.0%
!!! TTTCTTTTAAATTATAGAAT+AGG - chr4_2:50804104-50804123 Msa0605040:exon 10.0%
!! AATGTTTGTTTATTAAATTG+TGG + chr4_2:50800669-50800688 None:intergenic 15.0%
!!! AGACATTTTTTTTTTTTTGA+AGG - chr4_2:50800954-50800973 Msa0605040:three_prime_UTR 15.0%
!!! TTTTTTTTTTTGAAGGAAAA+AGG - chr4_2:50800961-50800980 Msa0605040:three_prime_UTR 15.0%
!!! TTTTTCTAATTTAAGTCATA+AGG + chr4_2:50801213-50801232 None:intergenic 15.0%
!!! TATCCAATTTTTATTATAGT+CGG - chr4_2:50801864-50801883 Msa0605040:intron 15.0%
!! GTAATTAATCAATAAACAAA+TGG + chr4_2:50803109-50803128 None:intergenic 15.0%
!!! GAGTTTAATCTTTTTAATTA+TGG - chr4_2:50803503-50803522 Msa0605040:intron 15.0%
!! TTTATATTATTCAATGATCT+AGG + chr4_2:50803978-50803997 None:intergenic 15.0%
!!! AAAATTTAAAAGCATGTTAT+TGG - chr4_2:50804141-50804160 Msa0605040:five_prime_UTR 15.0%
!!! TAATTAATTTTCAGCTTGTA+AGG - chr4_2:50800891-50800910 Msa0605040:intron 20.0%
!! TCATCTAATTAGTATAATTG+AGG - chr4_2:50801176-50801195 Msa0605040:CDS 20.0%
!! TTCATACTAGTAATATTGAA+AGG + chr4_2:50801478-50801497 None:intergenic 20.0%
!!! AAATATTTTATGGTTTTGGT+TGG + chr4_2:50802159-50802178 None:intergenic 20.0%
!!! AATATGTATTTTTAAGCATG+TGG - chr4_2:50802308-50802327 Msa0605040:intron 20.0%
!!! ATATGTATTTTTAAGCATGT+GGG - chr4_2:50802309-50802328 Msa0605040:intron 20.0%
!!! CTTGAATGGATATAAAATTT+TGG + chr4_2:50802349-50802368 None:intergenic 20.0%
!!! TTTTCTTTTTAAGTTTTTGC+AGG + chr4_2:50802493-50802512 None:intergenic 20.0%
!!! TATTAATACTCCTAATTTGT+TGG - chr4_2:50802559-50802578 Msa0605040:intron 20.0%
!! ATTAAGAATAATAGTGACAA+TGG + chr4_2:50802727-50802746 None:intergenic 20.0%
!! TTTACTAGTATATATTGACA+AGG - chr4_2:50803395-50803414 Msa0605040:CDS 20.0%
!! AACTCATATTGTGTATATTT+GGG + chr4_2:50803488-50803507 None:intergenic 20.0%
!! AAACTCATATTGTGTATATT+TGG + chr4_2:50803489-50803508 None:intergenic 20.0%
!!! TTTTATTGTTTCGTTATGTA+AGG - chr4_2:50803588-50803607 Msa0605040:intron 20.0%
!! TGATTTATATATGTTGCTAT+TGG - chr4_2:50803882-50803901 Msa0605040:intron 20.0%
!!! GATTTATATATGTTGCTATT+GGG - chr4_2:50803883-50803902 Msa0605040:intron 20.0%
!!! ATTTATATATGTTGCTATTG+GGG - chr4_2:50803884-50803903 Msa0605040:intron 20.0%
!!! TGTTATTGGTGTTATTATTA+AGG - chr4_2:50804155-50804174 Msa0605040:five_prime_UTR 20.0%
!!! GTTATTGGTGTTATTATTAA+GGG - chr4_2:50804156-50804175 Msa0605040:five_prime_UTR 20.0%
!!! ATTGTTGTTTTGCTCTATTA+CGG + chr4_2:50800623-50800642 None:intergenic 25.0%
! GTTTGTTTATTAAATTGTGG+TGG + chr4_2:50800666-50800685 None:intergenic 25.0%
! AATGCAATGAAGAAAAATTC+TGG - chr4_2:50800789-50800808 Msa0605040:three_prime_UTR 25.0%
! ATGCAATGAAGAAAAATTCT+GGG - chr4_2:50800790-50800809 Msa0605040:three_prime_UTR 25.0%
! AATTCTGATTGTTAGAATAC+TGG - chr4_2:50801027-50801046 Msa0605040:exon 25.0%
! CATTACTTGTATCTCTTATT+TGG - chr4_2:50801290-50801309 Msa0605040:intron 25.0%
! GAATCAAATTTGAAGAAGTT+AGG - chr4_2:50801395-50801414 Msa0605040:intron 25.0%
!!! TTACATTAGTCTTCTACAAA+AGG + chr4_2:50801514-50801533 None:intergenic 25.0%
!! ACACCGACTATAATAAAAAT+TGG + chr4_2:50801870-50801889 None:intergenic 25.0%
!! GTGTTTTTCTTTGGATTTAA+CGG + chr4_2:50801967-50801986 None:intergenic 25.0%
!! AGATGTGTTGTATAATCTTT+TGG + chr4_2:50802136-50802155 None:intergenic 25.0%
!! AAAATTTTGGACACAAGATT+TGG + chr4_2:50802336-50802355 None:intergenic 25.0%
! CACACTTTAACCAAAATATA+TGG - chr4_2:50802448-50802467 Msa0605040:intron 25.0%
!! ACATACACTACCATATATTT+TGG + chr4_2:50802461-50802480 None:intergenic 25.0%
!! ATTCACTCATTGATTAAAGA+TGG + chr4_2:50802642-50802661 None:intergenic 25.0%
! ATTATGACATGTTAGAATTC+TGG - chr4_2:50802952-50802971 Msa0605040:intron 25.0%
! AAAAGATTCAAATGTTCCTT+TGG - chr4_2:50803012-50803031 Msa0605040:intron 25.0%
! GTAATACTAACATACTACTA+TGG - chr4_2:50803324-50803343 Msa0605040:intron 25.0%
!! GTGTATATTTGAAATCATGA+TGG - chr4_2:50803430-50803449 Msa0605040:CDS 25.0%
! TTTGGATTTATCTTCAACAT+TGG + chr4_2:50803761-50803780 None:intergenic 25.0%
! AGAAACATAGTCTAATTAAG+AGG + chr4_2:50803788-50803807 None:intergenic 25.0%
! CTATAATTTAAAAGAAACGC+AGG + chr4_2:50804101-50804120 None:intergenic 25.0%
TGTTTATTAAATTGTGGTGG+TGG + chr4_2:50800663-50800682 None:intergenic 30.0%
CTCTCTTATAACACATAACA+TGG - chr4_2:50800692-50800711 Msa0605040:three_prime_UTR 30.0%
TGCAATGAAGAAAAATTCTG+GGG - chr4_2:50800791-50800810 Msa0605040:three_prime_UTR 30.0%
AATCATGAGTGATACTCAAT+TGG + chr4_2:50801006-50801025 None:intergenic 30.0%
AATGAAAACATTTGCTTAGC+TGG + chr4_2:50801064-50801083 None:intergenic 30.0%
GAAAGATTCAAATGTTCCTT+TGG - chr4_2:50801087-50801106 Msa0605040:CDS 30.0%
! TGTAAAAGATGAGCATTTTG+AGG - chr4_2:50801439-50801458 Msa0605040:intron 30.0%
TCTAGCTATGAAAAATGCAT+GGG - chr4_2:50801624-50801643 Msa0605040:intron 30.0%
TACTAATAGTACAAGTTACG+AGG + chr4_2:50801770-50801789 None:intergenic 30.0%
! TCGTAACTTGTACTATTAGT+AGG - chr4_2:50801769-50801788 Msa0605040:CDS 30.0%
! CGTAACTTGTACTATTAGTA+GGG - chr4_2:50801770-50801789 Msa0605040:CDS 30.0%
CAATGTCAAGAAAACTTACA+AGG - chr4_2:50801997-50802016 Msa0605040:CDS 30.0%
! TTTTGGTCGTTATGAATCAT+TGG + chr4_2:50802119-50802138 None:intergenic 30.0%
TCTACAGGAAAATACTTGAA+TGG + chr4_2:50802363-50802382 None:intergenic 30.0%
ATATGAGAGATGTTATCTAC+AGG + chr4_2:50802378-50802397 None:intergenic 30.0%
!!! TGTGCTTTTTCCAACAAATT+AGG + chr4_2:50802572-50802591 None:intergenic 30.0%
! TCATTGATTAAAGATGGAGT+TGG + chr4_2:50802636-50802655 None:intergenic 30.0%
!! TGATTTTGTAGTTTGTGCTA+TGG + chr4_2:50802688-50802707 None:intergenic 30.0%
TTCTTAATCAGCAGTTAACA+TGG - chr4_2:50802739-50802758 Msa0605040:intron 30.0%
GAATCAAACTTGAAGAAGTT+AGG - chr4_2:50803258-50803277 Msa0605040:intron 30.0%
! TGTAAAAGATGAGCATTTTG+AGG - chr4_2:50801439-50801458 Msa0605040:intron 30.0%
! GTTCTTCTAGAAAAGTAGTA+CGG + chr4_2:50803544-50803563 None:intergenic 30.0%
! TTCTTTTATGGTCTCCAAAA+GGG + chr4_2:50803626-50803645 None:intergenic 30.0%
!!! TTTTTTCATCTCAGCTTTGA+TGG + chr4_2:50803719-50803738 None:intergenic 30.0%
ACATAGTCTAATTAAGAGGA+GGG + chr4_2:50803784-50803803 None:intergenic 30.0%
AACATAGTCTAATTAAGAGG+AGG + chr4_2:50803785-50803804 None:intergenic 30.0%
! TCAACTTCAATAAGCTTGTT+TGG - chr4_2:50803829-50803848 Msa0605040:intron 30.0%
! CAACTTCAATAAGCTTGTTT+GGG - chr4_2:50803830-50803849 Msa0605040:intron 30.0%
!! TGGGGTTTGATAAGTTTTAA+AGG - chr4_2:50803902-50803921 Msa0605040:intron 30.0%
CCAGAACTGATCAAAATAAA+TGG + chr4_2:50804060-50804079 None:intergenic 30.0%
!!! CCATTTATTTTGATCAGTTC+TGG - chr4_2:50804057-50804076 Msa0605040:CDS 30.0%
!!! TATTTTGATCAGTTCTGGAT+TGG - chr4_2:50804062-50804081 Msa0605040:CDS 30.0%
TAATTTAAAAGAAACGCAGG+AGG + chr4_2:50804098-50804117 None:intergenic 30.0%
!! TTATTAAATTGTGGTGGTGG+TGG + chr4_2:50800660-50800679 None:intergenic 35.0%
TTGTGAAAAAGTTGAGACTC+AGG + chr4_2:50800818-50800837 None:intergenic 35.0%
!!! TACACCAGTTTTGAAATGAG+TGG + chr4_2:50801423-50801442 None:intergenic 35.0%
! GGTAACAAAACAAGCTCTTT+TGG - chr4_2:50801567-50801586 Msa0605040:CDS 35.0%
CTCTAGCTATGAAAAATGCA+TGG - chr4_2:50801623-50801642 Msa0605040:intron 35.0%
! CATTTCAGCTTTGATAGCAT+TGG + chr4_2:50801671-50801690 None:intergenic 35.0%
TTGTTGATATCAAGTGTGAG+TGG + chr4_2:50801901-50801920 None:intergenic 35.0%
!!! AGTCAAGAGGTGTTTTTCTT+TGG + chr4_2:50801976-50801995 None:intergenic 35.0%
TTCTTGACATTGTAGTCAAG+AGG + chr4_2:50801989-50802008 None:intergenic 35.0%
TTACAAGGATCAAATAGAGC+AGG - chr4_2:50802012-50802031 Msa0605040:CDS 35.0%
! CTCTTCACCAAGTTGAATTA+GGG - chr4_2:50802046-50802065 Msa0605040:CDS 35.0%
ATAAGAGCCCTAATTCAACT+TGG + chr4_2:50802056-50802075 None:intergenic 35.0%
ATTGCAAAATAACTCCCCAT+TGG - chr4_2:50802601-50802620 Msa0605040:intron 35.0%
AATGCAATCAAGAACAACTC+TGG - chr4_2:50802821-50802840 Msa0605040:intron 35.0%
AATGAGAACAATTGCTTAGC+TGG + chr4_2:50802989-50803008 None:intergenic 35.0%
!!! TACACCAGTTTTGAAATGAG+TGG + chr4_2:50801423-50801442 None:intergenic 35.0%
ACTATGGTTGACACAATGTT+AGG - chr4_2:50803340-50803359 Msa0605040:intron 35.0%
AAAAGACTTGTACATTCGCA+CGG + chr4_2:50803378-50803397 None:intergenic 35.0%
! ATTGTGTATATTTGGGTTCG+TGG + chr4_2:50803481-50803500 None:intergenic 35.0%
! CTTCTTTTATGGTCTCCAAA+AGG + chr4_2:50803627-50803646 None:intergenic 35.0%
! CTCAGGTAATGCTTCTTTTA+TGG + chr4_2:50803638-50803657 None:intergenic 35.0%
CTTATTGAAGTTGAGAGCAA+AGG + chr4_2:50803823-50803842 None:intergenic 35.0%
!! TCAGTTCTGGATTGGAAATT+TGG - chr4_2:50804070-50804089 Msa0605040:CDS 35.0%
TCCATAAGTGATCTCAGAAA+CGG + chr4_2:50804182-50804201 None:intergenic 35.0%
GGAAGAGAACAAGAAAACTG+TGG - chr4_2:50800713-50800732 Msa0605040:three_prime_UTR 40.0%
GAGAACAAGAAAACTGTGGA+TGG - chr4_2:50800717-50800736 Msa0605040:three_prime_UTR 40.0%
! AAGCTCTAGTGCTAAAGTCA+TGG - chr4_2:50800766-50800785 Msa0605040:three_prime_UTR 40.0%
GAAAACATTTGCTTAGCTGG+TGG + chr4_2:50801061-50801080 None:intergenic 40.0%
! AGCTTAGGATTTTGCTCCAA+AGG + chr4_2:50801106-50801125 None:intergenic 40.0%
AGAAAGACAGACATAGCATG+TGG + chr4_2:50801133-50801152 None:intergenic 40.0%
TGCTATGTCTGTCTTTCTCA+TGG - chr4_2:50801135-50801154 Msa0605040:CDS 40.0%
ATCAGCAGTTCAATTGCGTA+AGG - chr4_2:50801352-50801371 Msa0605040:intron 40.0%
!! AGCTCTTTTGGAGACAATAG+AGG - chr4_2:50801579-50801598 Msa0605040:CDS 40.0%
AGGAAGCAATACCTGAAATG+TGG - chr4_2:50801599-50801618 Msa0605040:intron 40.0%
ATAGCTAGAGACCACATTTC+AGG + chr4_2:50801613-50801632 None:intergenic 40.0%
GAAAGAAGCTCATGATCAAC+TGG - chr4_2:50801690-50801709 Msa0605040:intron 40.0%
TTAACGGCAATGCAAGTGTA+GGG + chr4_2:50801951-50801970 None:intergenic 40.0%
TTTAACGGCAATGCAAGTGT+AGG + chr4_2:50801952-50801971 None:intergenic 40.0%
! GCTCTTCACCAAGTTGAATT+AGG - chr4_2:50802045-50802064 Msa0605040:CDS 40.0%
GACCACAAACAATTCTTGTG+TGG - chr4_2:50802187-50802206 Msa0605040:intron 40.0%
GACCACACAAGAATTGTTTG+TGG + chr4_2:50802192-50802211 None:intergenic 40.0%
CTTGTGTGGTCACAATACTT+TGG - chr4_2:50802201-50802220 Msa0605040:intron 40.0%
GTTAACATGGAAGAGAACAC+AGG - chr4_2:50802752-50802771 Msa0605040:intron 40.0%
! AGCTTAGGATTTTGCTCCAA+AGG + chr4_2:50801106-50801125 None:intergenic 40.0%
TACCATGAGAAAGACAGACA+TGG + chr4_2:50801140-50801159 None:intergenic 40.0%
TGGATGCTAAGTGTTAAGCA+AGG + chr4_2:50803089-50803108 None:intergenic 40.0%
GCAGTTCAATTGAGAAATGC+TGG - chr4_2:50803219-50803238 Msa0605040:CDS 40.0%
!! AAGAAGCATTACCTGAGATG+TGG - chr4_2:50803641-50803660 Msa0605040:intron 40.0%
GTCTAATTAAGAGGAGGGTT+TGG + chr4_2:50803779-50803798 None:intergenic 40.0%
ATAGCATGTGGCTTGAGCTT+AGG + chr4_2:50801121-50801140 None:intergenic 45.0%
!! GGTGCCACTCATTTCAAAAC+TGG - chr4_2:50801416-50801435 Msa0605040:intron 45.0%
! ATCGAAAAGAGAGAGCGTGT+AGG - chr4_2:50801822-50801841 Msa0605040:CDS 45.0%
!! TTAGAGTCCATAGAAGCGTC+AGG - chr4_2:50802081-50802100 Msa0605040:intron 45.0%
! AAGCTCTAGTCGTGAAGTCA+TGG - chr4_2:50802798-50802817 Msa0605040:intron 45.0%
GAGAACAATTGCTTAGCTGG+TGG + chr4_2:50802986-50803005 None:intergenic 45.0%
AGAAAGACAGACATGGCATG+AGG + chr4_2:50803058-50803077 None:intergenic 45.0%
TGCCATGTCTGTCTTTCTCA+TGG - chr4_2:50803060-50803079 Msa0605040:intron 45.0%
!! GGTGCCACTCATTTCAAAAC+TGG - chr4_2:50801416-50801435 Msa0605040:intron 45.0%
! GGTAACAAAGCAAGCCCTTT+TGG - chr4_2:50803609-50803628 Msa0605040:intron 45.0%
ATTACCTGAGATGTGGTCAC+CGG - chr4_2:50803648-50803667 Msa0605040:intron 45.0%
ACCGGCTATGGAAAATGCAT+GGG - chr4_2:50803666-50803685 Msa0605040:intron 45.0%
! CATCTCAGCTTTGATGGCAT+TGG + chr4_2:50803713-50803732 None:intergenic 45.0%
!! GCCGTTTCTGAGATCACTTA+TGG - chr4_2:50804178-50804197 Msa0605040:five_prime_UTR 45.0%
!! AAATTAATTAATATAATTGA+CGG + chr4_2:50800881-50800900 None:intergenic 5.0%
!!! TAAGTAATTTTAAATATAAT+TGG - chr4_2:50801728-50801747 Msa0605040:intron 5.0%
!!! TCTATATAAAAAATATTTTA+TGG + chr4_2:50802169-50802188 None:intergenic 5.0%
!!! ATTTATATTCATTTTATTAT+AGG - chr4_2:50804019-50804038 Msa0605040:CDS 5.0%
!! AATTGTGGTGGTGGTGGCAA+TGG + chr4_2:50800654-50800673 None:intergenic 50.0%
GCAGTTCAATTGCGTAAGGC+TGG - chr4_2:50801356-50801375 Msa0605040:intron 50.0%
TAGGGTAGCATGCTCTGCAA+TGG - chr4_2:50801788-50801807 Msa0605040:CDS 50.0%
GGCAATGCAAGTGTAGGGTA+TGG + chr4_2:50801946-50801965 None:intergenic 50.0%
TGTTGCTCCTGACGCTTCTA+TGG + chr4_2:50802091-50802110 None:intergenic 50.0%
! AGTTGGCTCTTCGTGCCAAT+GGG + chr4_2:50802619-50802638 None:intergenic 50.0%
! CACAGGCAGTTGTTTCACAG+AGG - chr4_2:50802769-50802788 Msa0605040:intron 50.0%
ATGGCATGAGGCTTGAGCTT+AGG + chr4_2:50803046-50803065 None:intergenic 50.0%
TGTACATTCGCACGGATGCA+CGG + chr4_2:50803370-50803389 None:intergenic 50.0%
! CACCGGCTATGGAAAATGCA+TGG - chr4_2:50803665-50803684 Msa0605040:intron 50.0%
! CCCCATGCATTTTCCATAGC+CGG + chr4_2:50803670-50803689 None:intergenic 50.0%
CCGGCTATGGAAAATGCATG+GGG - chr4_2:50803667-50803686 Msa0605040:CDS 50.0%
GGCAGAAGCTCATGATCAGC+TGG - chr4_2:50801645-50801664 Msa0605040:intron 55.0%
! GTTGGCTCTTCGTGCCAATG+GGG + chr4_2:50802618-50802637 None:intergenic 55.0%
! GAGTTGGCTCTTCGTGCCAA+TGG + chr4_2:50802620-50802639 None:intergenic 55.0%
ATAGCCGGTGACCACATCTC+AGG + chr4_2:50803655-50803674 None:intergenic 55.0%
! TGAGATGTGGTCACCGGCTA+TGG - chr4_2:50803654-50803673 Msa0605040:intron 55.0%
!! GGCATTGGCCAGCTGATCAT+GGG + chr4_2:50803698-50803717 None:intergenic 55.0%
!! TGGCATTGGCCAGCTGATCA+TGG + chr4_2:50803699-50803718 None:intergenic 55.0%
GGGAGAAGCCCATGATCAGC+TGG - chr4_2:50803687-50803706 Msa0605040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50800602 50804221 50800602 ID=Msa0605040;Name=Msa0605040
chr4_2 mRNA 50800602 50804221 50800602 ID=Msa0605040-mRNA-1;Parent=Msa0605040;Name=Msa0605040-mRNA-1;_AED=0.23;_eAED=0.23;_QI=109|0.75|0.77|1|0.87|0.77|9|360|374
chr4_2 exon 50800602 50800843 50800602 ID=Msa0605040-mRNA-1:exon:12061;Parent=Msa0605040-mRNA-1
chr4_2 exon 50800913 50801213 50800913 ID=Msa0605040-mRNA-1:exon:12060;Parent=Msa0605040-mRNA-1
chr4_2 exon 50801500 50801616 50801500 ID=Msa0605040-mRNA-1:exon:12059;Parent=Msa0605040-mRNA-1
chr4_2 exon 50801742 50801856 50801742 ID=Msa0605040-mRNA-1:exon:12058;Parent=Msa0605040-mRNA-1
chr4_2 exon 50801953 50802073 50801953 ID=Msa0605040-mRNA-1:exon:12057;Parent=Msa0605040-mRNA-1
chr4_2 exon 50803093 50803255 50803093 ID=Msa0605040-mRNA-1:exon:12056;Parent=Msa0605040-mRNA-1
chr4_2 exon 50803363 50803479 50803363 ID=Msa0605040-mRNA-1:exon:12055;Parent=Msa0605040-mRNA-1
chr4_2 exon 50803667 50803847 50803667 ID=Msa0605040-mRNA-1:exon:12054;Parent=Msa0605040-mRNA-1
chr4_2 exon 50803985 50804221 50803985 ID=Msa0605040-mRNA-1:exon:12053;Parent=Msa0605040-mRNA-1
chr4_2 five_prime_UTR 50804113 50804221 50804113 ID=Msa0605040-mRNA-1:five_prime_utr;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50803985 50804112 50803985 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50803667 50803847 50803667 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50803363 50803479 50803363 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50803093 50803255 50803093 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50801953 50802073 50801953 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50801742 50801856 50801742 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50801500 50801616 50801500 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 CDS 50801031 50801213 50801031 ID=Msa0605040-mRNA-1:cds;Parent=Msa0605040-mRNA-1
chr4_2 three_prime_UTR 50800913 50801030 50800913 ID=Msa0605040-mRNA-1:three_prime_utr;Parent=Msa0605040-mRNA-1
chr4_2 three_prime_UTR 50800602 50800843 50800602 ID=Msa0605040-mRNA-1:three_prime_utr;Parent=Msa0605040-mRNA-1
Gene Sequence

>Msa0605040

ATGGAAGAGAACAAGAAAACTGTGGATGGAAGTGTTTGTTTCACAGAAGAGCAAGAAGCTCTAGTGCTAAAGTCATGGAATGCAATGAAGAAAAATTCTGGGGACCTGAGTCTCAACTTTTTCACAAAGAAAAAGGTAACTAGACATGTTTTTGACCAATTGAGTATCACTCATGATTTAATTCTGATTGTTAGAATACTGGAGATTGCTCCACCAGCTAAGCAAATGTTTTCATTCTTGAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCACATGCTATGTCTGTCTTTCTCATGACTTGTGAATCAGCAGTTCAATTGCGTAAGGCTGGTAAAGTCACAGTGAGAGAATCAAATTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAACAAAACAAGCTCTTTTGGAGACAATAGAGGAAGCAATACCTGAAATGTGGTCTCTAGCTATGAAAAATGCATGGGCAGAAGCTCATGATCAGCTGGCCAATGCTATCAAAGCTGAAATGAAAGAAGCTCATGATCAACTGGACAATGCCAATTTGATAACAGTTAACATGGAAGAGAACACAGGCAGTTGTTTCACAGAGGAACAAGAAGCTCTAGTCGTGAAGTCATGGAATGCAATCAAGAACAACTCTGGAGATCTGAGTCTCAAGTTTTTCAAGAAAATTCTGGAGATTGCTCCACCAGCTAAGCAATTGTTCTCATTCTTAAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCTCATGCCATGTCTGTCTTTCTCATGACATGTGAATCAGCAGTTCAATTGAGAAATGCTGGTAAAGTAACTGTTAGAGAATCAAACTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAACAAAGCAAGCCCTTTTGGAGACCATAAAAGAAGCATTACCTGAGATGTGGTCACCGGCTATGGAAAATGCATGGGGAGAAGCCCATGATCAGCTGGCCAATGCCATCAAAGCTGAGATGAAAAAAGCTGATCATGATCATCAGACCAATGTTGAAGATAAATCCAAACCCTCCTCTTAA

Protein sequence

>Msa0605040

MEENKKTVDGSVCFTEEQEALVLKSWNAMKKNSGDLSLNFFTKKKVTRHVFDQLSITHDLILIVRILEIAPPAKQMFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRKAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIEEAIPEMWSLAMKNAWAEAHDQLANAIKAEMKEAHDQLDNANLITVNMEENTGSCFTEEQEALVVKSWNAIKNNSGDLSLKFFKKILEIAPPAKQLFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRNAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIKEALPEMWSPAMENAWGEAHDQLANAIKAEMKKADHDHQTNVEDKSKPSS*