AlfalfaGEDB | MS.gene91964

M. sativa cultivar XinJiangDaYe / MS.gene91964

KEGG: K02639
GO: GO:0003674 GO:0003824 GO:0005488 GO:0009055 GO:0016491 GO:0048037 GO:0051536 GO:0051540
PFAM: PF00111.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91964.t1	XP_003608621.1	97.5	163	3	1	1	163	1	162	1.20E-84	322.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91964.t1	Q9C7Y4	61.4	158	58	2	6	163	3	157	1.7e-47	190.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91964.t1	G7JGG5	97.5	163	3	1	1	163	1	162	8.8e-85	322.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene91964	0.851434	8.90E-61	-1.69E-46
MS.gene049171	MS.gene91964	0.896886	2.40E-76	-1.69E-46
MS.gene049173	MS.gene91964	0.879487	1.20E-69	-1.69E-46
MS.gene049217	MS.gene91964	0.907845	3.26E-81	-1.69E-46
MS.gene049222	MS.gene91964	0.905608	3.59E-80	-1.69E-46
MS.gene049232	MS.gene91964	0.861682	8.64E-64	-1.69E-46
MS.gene049285	MS.gene91964	0.910464	1.82E-82	-1.69E-46
MS.gene049320	MS.gene91964	0.893759	4.66E-75	-1.69E-46
MS.gene049369	MS.gene91964	0.813786	2.15E-51	-1.69E-46
MS.gene04939	MS.gene91964	0.807228	5.60E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91964.t1	MTR_4g098490	96.951	164	4	1	1	164	1	163	1.01e-116	328
MS.gene91964.t1	MTR_1g112030	39.286	84	51	0	74	157	71	154	7.39e-18	76.3
MS.gene91964.t1	MTR_1g112030	39.286	84	51	0	74	157	75	158	8.26e-18	75.9
MS.gene91964.t1	MTR_1g112050	39.286	84	51	0	74	157	69	152	1.15e-17	75.5
MS.gene91964.t1	MTR_2g006290	40.741	81	48	0	77	157	67	147	1.81e-17	74.7
MS.gene91964.t1	MTR_4g053120	29.167	144	99	1	14	157	13	153	9.68e-17	73.2
MS.gene91964.t1	MTR_8g088720	37.037	81	51	0	77	157	65	145	1.00e-16	72.8
MS.gene91964.t1	MTR_2g086510	34.524	84	55	0	74	157	70	153	4.30e-15	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91964.t1	AT1G32550	61.006	159	59	2	6	164	3	158	4.62e-64	194
MS.gene91964.t1	AT1G32550	54.286	175	58	4	6	164	3	171	1.25e-56	176
MS.gene91964.t1	AT2G27510	41.250	80	47	0	78	157	74	153	6.99e-17	73.6
MS.gene91964.t1	AT1G10960	39.726	73	44	0	84	156	73	145	5.56e-15	68.6
MS.gene91964.t1	AT1G60950	33.043	115	64	3	54	159	37	147	1.64e-14	67.0
MS.gene91964.t1	AT4G14890	33.673	98	60	3	61	157	50	143	7.97e-11	57.8

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Find 43 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGTACCATGCCTGC+AGG	0.542760	8.3:+12002981	None:intergenic
AACCCTCCGCAAGTCGACGG+TGG	0.642319	8.3:-12003303	MS.gene91964:CDS
AACGATTACCGGTATCCTAG+TGG	0.663180	8.3:-12003236	MS.gene91964:CDS
AATCGAACAACAACTACTAC+TGG	0.397418	8.3:+12003364	None:intergenic
ACAGTCTTTAGGATATATAC+TGG	0.389290	8.3:-12000829	MS.gene91964:intron
ACAGTTCACGATAGACAACG+AGG	0.785544	8.3:-12003191	MS.gene91964:CDS
ACATACCTGCTCTCTCAGTT+CGG	0.483855	8.3:+12002123	None:intergenic
ACTACTGGGAATTCGAAGAA+GGG	0.593926	8.3:+12003379	None:intergenic
AGAAACTCAAGATGAAGATG+AGG	0.630393	8.3:-12001019	MS.gene91964:intron
AGCGACGGAGCTTCAAACGC+CGG	0.637539	8.3:-12003276	MS.gene91964:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATATTCTCACCCAA+AGG	+	chr8.3:12001659-12001678	None:intergenic	30.0%
AAAGAATATTCTCACCCAAA+GGG	+	chr8.3:12001658-12001677	None:intergenic	30.0%
AAATATCTTCGTTCTGTTGT+AGG	+	chr8.3:12002946-12002965	None:intergenic	30.0%
AACAGAGAAATAAGAGACAT+TGG	+	chr8.3:12003084-12003103	None:intergenic	30.0%
AATAGCAGAGACTAAATTGA+TGG	+	chr8.3:12001492-12001511	None:intergenic	30.0%
AATATCTTCGTTCTGTTGTA+GGG	+	chr8.3:12002945-12002964	None:intergenic	30.0%
AATGTGAACACGTTTAGTAT+TGG	+	chr8.3:12002407-12002426	None:intergenic	30.0%
ACCTATACTTCAACTATACA+TGG	+	chr8.3:12001767-12001786	None:intergenic	30.0%
AGATGATTAATTCAAACCTC+AGG	+	chr8.3:12001066-12001085	None:intergenic	30.0%
ATATCGGCCATTCAAATAAT+AGG	-	chr8.3:12002615-12002634	MS.gene91964:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	12000820	12003411	12000820	ID=MS.gene91964
chr8.3	mRNA	12000820	12003411	12000820	ID=MS.gene91964.t1;Parent=MS.gene91964
chr8.3	exon	12003163	12003411	12003163	ID=MS.gene91964.t1.exon1;Parent=MS.gene91964.t1
chr8.3	CDS	12003163	12003411	12003163	ID=cds.MS.gene91964.t1;Parent=MS.gene91964.t1
chr8.3	exon	12002992	12003055	12002992	ID=MS.gene91964.t1.exon2;Parent=MS.gene91964.t1
chr8.3	CDS	12002992	12003055	12002992	ID=cds.MS.gene91964.t1;Parent=MS.gene91964.t1
chr8.3	exon	12002129	12002217	12002129	ID=MS.gene91964.t1.exon3;Parent=MS.gene91964.t1
chr8.3	CDS	12002129	12002217	12002129	ID=cds.MS.gene91964.t1;Parent=MS.gene91964.t1
chr8.3	exon	12001020	12001088	12001020	ID=MS.gene91964.t1.exon4;Parent=MS.gene91964.t1
chr8.3	CDS	12001020	12001088	12001020	ID=cds.MS.gene91964.t1;Parent=MS.gene91964.t1
chr8.3	exon	12000820	12000840	12000820	ID=MS.gene91964.t1.exon5;Parent=MS.gene91964.t1
chr8.3	CDS	12000820	12000840	12000820	ID=cds.MS.gene91964.t1;Parent=MS.gene91964.t1

Gene Sequence

>MS.gene91964

ATGGCGCTACCCCTTCTTCGAATTCCCAGTAGTAGTTGTTGTTCGATTCCATTTATTAATACAAAGCCGCAATCTCTTCCTTCTAAAACCCTCCGCAAGTCGACGGTGGCAGCAGCGACGGAGCTTCAAACGCCGGTGAGACTAACGGAAGCAAACGATTACCGGTATCCTAGTGGTGATGCTCCAACTCATAAGGTCACAGTTCACGATAGACAACGAGGAGTTGTTCACGAATTCCTTGTACCTGAGGTTTGAATTAATCATCTACTCAACTAAATTAACCAGATGTTGCATGTGTAGAAAAAAAAATGTCCGTATATATCAATGTTAATGTGAGTACTGTTTGTGAAATGCAGGACCAGTATATATTGCATACTGCTGAGTCTCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTACTTATTTTTATCTTCAAATTATGATTACTTTAAACTTACGCAAATCATCGTATAACTATTGAATTAGGATGAATCACAGATACCTAACACGATCCTGACACTGGTAGTAATTTGAAGGAAAAAAAAAATGGATGTAACAAATGTGTCGATGTCGTATTGGTGTAGACACTGATACATGCCTGACCCTGGATACGCCTTCTATCTGAAGTGTCGGTGCTATATGGCTACACAGTACCAAAGAATAAACCATCAATTTAGTCTCTGCTATTAAGATGTTAGGGATTAAATTGACGGATTTTCATATACTTTAGGAACTAGTTATTATGGTTTATGGGCTAAATTGGAGAGAGTAATAGTTTAGGGACTAAATTGATGGTTAATTCCATACGAAGTTTGATATTTTTAACCTATACCCTTTGGGTGAGAATATTCTTTTCAATTTTCATTGGTTCCATAGATGTTCCAACTTCCATATGTAATTAGTATTGGCCCTTACCTACCAATTATAGATTCAATTTCATCCATGTATAGTTGAAGTATAGGTTAAATTCTGATCAATGTATACTAGTGTAAAATTCATTTTCCCTCCTATTGGGAACGTAGACAATCACAATTTTCCTGTGTAGATCATGTAATGCATCATTGATACTTGTTTTCTGTGCTGCTTCTGTTTCCGTTTAGATTGATATATGTTTGGTTTTTGATGCTATTGCTGGTTTCCTGATTTTGTTTGCTTATTTGATGCATCATGCATTGCTATTTTTATGGTAGGTTGTTGTACTAGTTGCGCTGTTCGCATAAAGAATGGGAAGATTAAACAGCCAGAGGCTCTTGGGATCTCTGCCGAACTGAGAGAGCAGGTATGTAAAACCATGTTTATGAACTTTTTTTTTCTTGAATTGATCATTTTGATTTGTTAAGTAGCAATGCATGATGCTCTGGTGGCATGCTTTGTATTTGCTGCTTTTCCCATCAACCATCTTCAATGACGCTAAAGAAGAGGATCAGATTTTATTTTCCATTTTCATTCTAATCTTGAAAAGTAAAAGAAGATATTTGAAATTGATAACCATTATACTTTATACATGTTATTATAGAGGAGAGGAGGACGAAGTGGTGGTTGTAGTGGTATAAAACTATCTTCATTTCAGTTTCAACATGCCAATACTAAACGTGTTCACATTATGATGTCTTACCTGTCTACAAGTTTACTTTATTCATTTGACGGGAAATAAGACATTGAATTGAAAATTGTGTATTTCTGTCACAGTGCCATTGTGCTGAACTTGTAGTTATTGTTTTCATTTATTATTATAGTTAAATGCAAAGCCAAAATAACAGTTGCTTCTAACAATAATGAACTAATGTGATTATATCGGCCATTCAAATAATAGGGTGCTGTTTTCTGTATTTTTCTATTACGCTGTTTATCCATTTTTTGAATGTTAACTTCACTGAATCACTTGAATTAAATTTTTAAAAAAACCAAATGTATTAACGTGTTTTTTTTGGTTTGTTCCAGTTATTAAAATAAGAATGTGAATTGAAAATGATTTACTTGTTCAATTTAGAAGTTTGTCTACTCAAACTCATTTTTCTGGTATATTCCTCTTATGATTGTTTGTATATTTTACATTTTGATTTCTTTGTTGGTGTTTCAATTTAAGGGTCCCAACACAAACAAGTAATTAAGATATATCCCTACAACAGAACGAAGATATTTTTCAGCTTATGGATAGTTTGATGCCATTTGCTATGAACACCCTTTTTCCACTATAGTAGTTAACAACTACGAGGAAAACATTTTATTTGTTTCATTATCATTACTCTCGCAAATTCCAATGTCTCTTATTTCTCTGTTGGACATGTTTTTGAGATTTTTGTTTCATTTCATTTTCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTAACAAGCAAAATTATAATCATAGCTTTCATTTTATGGTAACTGTTTGAATAGATACCAAATCAAATCAACACTAAGCAGATGTTTTTAATTTTAATCTTGTTAGTATACCTGCAAAATATCTCACATTACTTTTGGTGTACCTTTGAATATTCTTGAATATTTTACACAGTCTTTAGGATATATACTGGAACCAATTA

Protein sequence

>MS.gene91964.t1

MALPLLRIPSSSCCSIPFINTKPQSLPSKTLRKSTVAAATELQTPVRLTEANDYRYPSGDAPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKNGKIKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEDIYWNQL