AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019377.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019377.01.T01 MTR_1g073140 95.192 104 5 0 1 104 1 104 4.22e-67 204
MsG0480019377.01.T01 MTR_1g073140 96.296 54 2 0 107 160 186 239 1.70e-32 115
MsG0480019377.01.T01 MTR_1g073140 95.192 104 5 0 1 104 1 104 6.90e-67 203
MsG0480019377.01.T01 MTR_1g073140 80.000 50 8 1 107 156 186 233 1.15e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019377.01.T01 AT2G33255 64.583 96 30 2 19 110 23 118 5.77e-36 125
MsG0480019377.01.T01 AT2G33255 59.259 54 22 0 107 160 192 245 5.83e-16 72.8

Find 49 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGCTTTATTGACTTCTT+AGG 0.133455 4:+19251328 MsG0480019377.01.T01:three_prime_UTR
GAAATCGACATTAGCATATT+CGG 0.286039 4:-19251035 None:intergenic
ATCATAAACCACAAAATAAA+TGG 0.325555 4:-19251155 None:intergenic
GACGCCACGGAGGCGCGTTT+TGG 0.336627 4:-19248805 None:intergenic
AATAATGTTGTATCATATCT+TGG 0.360992 4:+19251296 MsG0480019377.01.T01:three_prime_UTR
AAAATGAGCAATGGTATCAT+AGG 0.361847 4:-19248994 None:intergenic
AGGGAAGTTACCTTGAAATC+TGG 0.368119 4:-19251061 None:intergenic
AAATCGACATTAGCATATTC+GGG 0.370379 4:-19251034 None:intergenic
TAAGCTTTATTGACTTCTTA+GGG 0.375413 4:+19251329 MsG0480019377.01.T01:three_prime_UTR
GTATTACTACCAGCATGATT+TGG 0.378259 4:-19249040 None:intergenic
TGGTTTATGATATAAGAATC+TGG 0.392922 4:+19251167 MsG0480019377.01.T01:three_prime_UTR
CGATTTCAAACCAGATTTCA+AGG 0.418712 4:+19251051 MsG0480019377.01.T01:CDS
ACTTGTCTGCTTGATCAAAC+TGG 0.423784 4:+19250998 MsG0480019377.01.T01:CDS
TTTATTCCTCACCTCATGTA+AGG 0.429471 4:+19251219 MsG0480019377.01.T01:three_prime_UTR
ATTGCTTGTGGAGGGCGAGC+AGG 0.444789 4:+19250968 MsG0480019377.01.T01:CDS
ATCGATTCCAGCAGGGTTTG+AGG 0.464862 4:-19248925 None:intergenic
GAGGAGGTGACATCTACATT+TGG 0.473312 4:+19251189 MsG0480019377.01.T01:three_prime_UTR
TTCAAGATATCGATTCCAGC+AGG 0.477823 4:-19248933 None:intergenic
GCCGAGTACTGCTTTGTACA+TGG 0.510991 4:-19248877 None:intergenic
GCGAACAAAACTTGAGATCA+TGG 0.518487 4:-19251127 None:intergenic
GTCAAAGCCTCAAACCCTGC+TGG 0.521374 4:+19248918 MsG0480019377.01.T01:CDS
ACATGGTGCGTGGGAAGAGA+AGG 0.533604 4:-19248767 None:intergenic
GAGCAATGGTATCATAGGCT+TGG 0.543525 4:-19248989 None:intergenic
TCTTGAAACTCATTGATCAC+TGG 0.545427 4:+19248949 MsG0480019377.01.T01:CDS
GAATGAATGTCACAAAATAG+TGG 0.551438 4:+19251351 MsG0480019377.01.T01:three_prime_UTR
AGGGAAATCAATGACGGGGA+CGG 0.561282 4:-19248853 None:intergenic
TTACTACCAGCATGATTTGG+AGG 0.566719 4:-19249037 None:intergenic
TCCATGTACAAAGCAGTACT+CGG 0.569767 4:+19248876 MsG0480019377.01.T01:CDS
CGATCACCTCCAAATCATGC+TGG 0.570443 4:+19249031 MsG0480019377.01.T01:CDS
ATGGAAGGGAAATCAATGAC+GGG 0.572088 4:-19248858 None:intergenic
AGTACTGCTTTGTACATGGA+AGG 0.576818 4:-19248873 None:intergenic
TAGGCTTGGCGTTGTTGATG+TGG 0.585097 4:-19248975 None:intergenic
GGTGGTTAAGTGTGATGACA+TGG 0.587907 4:-19248784 None:intergenic
ATGATATAAGAATCTGGAGG+AGG 0.593886 4:+19251173 MsG0480019377.01.T01:three_prime_UTR
TCATGACCTTACATGAGGTG+AGG 0.596319 4:-19251225 None:intergenic
AATTGAGTAAACTTCAGAGA+GGG 0.606847 4:-19251080 None:intergenic
CATGGAAGGGAAATCAATGA+CGG 0.615972 4:-19248859 None:intergenic
GAGGTGACATCTACATTTGG+AGG 0.622873 4:+19251192 MsG0480019377.01.T01:three_prime_UTR
GTCTGCTTGATCAAACTGGA+AGG 0.626822 4:+19251002 MsG0480019377.01.T01:CDS
AAGTGTGATGACATGGTGCG+TGG 0.628658 4:-19248777 None:intergenic
TCAAGATATCGATTCCAGCA+GGG 0.632481 4:-19248932 None:intergenic
ACCACCAAAACGCGCCTCCG+TGG 0.633706 4:+19248801 MsG0480019377.01.T01:CDS
GTACTGCTTTGTACATGGAA+GGG 0.645077 4:-19248872 None:intergenic
CCATGTCGAAAACGACGCCA+CGG 0.669079 4:-19248818 None:intergenic
AGTGTGATGACATGGTGCGT+GGG 0.699733 4:-19248776 None:intergenic
TGTCGAAAACGACGCCACGG+AGG 0.727352 4:-19248815 None:intergenic
TGGAAGGGAAATCAATGACG+GGG 0.729656 4:-19248857 None:intergenic
GAATTGAGTAAACTTCAGAG+AGG 0.733429 4:-19251081 None:intergenic
TTTATGATATAAGAATCTGG+AGG 0.768254 4:+19251170 MsG0480019377.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTACTTTTTTTTATTATATT+AGG + Chr4:19249082-19249101 MsG0480019377.01.T01:intron 10.0%
!! AATAATGTTGTATCATATCT+TGG + Chr4:19251296-19251315 MsG0480019377.01.T01:three_prime_UTR 20.0%
!! AATATGAACAAATAAAAGGA+GGG - Chr4:19250181-19250200 None:intergenic 20.0%
!! AGAGCATGTTTATAAAAAAA+AGG - Chr4:19249651-19249670 None:intergenic 20.0%
!! ATCATAAACCACAAAATAAA+TGG - Chr4:19251158-19251177 None:intergenic 20.0%
!! CATGAATATGAACAAATAAA+AGG - Chr4:19250185-19250204 None:intergenic 20.0%
!! GAACATTCAATCAAATTAAT+GGG - Chr4:19250455-19250474 None:intergenic 20.0%
!! GAGCATGTTTATAAAAAAAA+GGG - Chr4:19249650-19249669 None:intergenic 20.0%
!! GTTTGTTTGAATTGATTATT+TGG - Chr4:19250080-19250099 None:intergenic 20.0%
!! TCAATTTACATTACACAATT+GGG + Chr4:19249285-19249304 MsG0480019377.01.T01:intron 20.0%
!! TGAACATTCAATCAAATTAA+TGG - Chr4:19250456-19250475 None:intergenic 20.0%
!! TTGAATGTTCATGATTTATA+TGG + Chr4:19250465-19250484 MsG0480019377.01.T01:intron 20.0%
!! TTTCTCAAAGATTAACAAAA+TGG - Chr4:19249761-19249780 None:intergenic 20.0%
!!! CTTTTATTTGTTCATATTCA+TGG + Chr4:19250183-19250202 MsG0480019377.01.T01:intron 20.0%
!!! GTGTTTTTTCAAATTATTAG+CGG + Chr4:19249390-19249409 MsG0480019377.01.T01:intron 20.0%
!!! TGATTTTATTCTATCTGTTA+TGG - Chr4:19249911-19249930 None:intergenic 20.0%
! AATTGAAACGGTTAAAGTTA+TGG - Chr4:19250734-19250753 None:intergenic 25.0%
! AGAAACAATTGTAAAATCGA+AGG + Chr4:19250530-19250549 MsG0480019377.01.T01:intron 25.0%
! ATATGAACAAATAAAAGGAG+GGG - Chr4:19250180-19250199 None:intergenic 25.0%
! ATTGAAACGGTTAAAGTTAT+GGG - Chr4:19250733-19250752 None:intergenic 25.0%
! CAATTCAAACAAACCTTAAA+AGG + Chr4:19250086-19250105 MsG0480019377.01.T01:intron 25.0%
! CTCAATTTACATTACACAAT+TGG + Chr4:19249284-19249303 MsG0480019377.01.T01:intron 25.0%
! GAATATGAACAAATAAAAGG+AGG - Chr4:19250182-19250201 None:intergenic 25.0%
! GAGAAAACAAAATCAGTAAA+AGG + Chr4:19249775-19249794 MsG0480019377.01.T01:intron 25.0%
! GCATAATAAATTGAACTAAC+AGG + Chr4:19250140-19250159 MsG0480019377.01.T01:intron 25.0%
! GGAGTTAAATCTATAAAGTT+TGG + Chr4:19249723-19249742 MsG0480019377.01.T01:intron 25.0%
! TAAGTGGCATAAAATTGAAA+CGG - Chr4:19250746-19250765 None:intergenic 25.0%
! TAATCATTGTATTAGTGTGT+CGG - Chr4:19249369-19249388 None:intergenic 25.0%
! TACAAAAGAAGAAGAAAAGT+AGG - Chr4:19249065-19249084 None:intergenic 25.0%
! TGAATCAACAAATATTTCGT+TGG - Chr4:19250889-19250908 None:intergenic 25.0%
! TGGTTTATGATATAAGAATC+TGG + Chr4:19251167-19251186 MsG0480019377.01.T01:three_prime_UTR 25.0%
! TGTTATCAAGTTACTACTAT+TGG + Chr4:19249683-19249702 MsG0480019377.01.T01:intron 25.0%
! TGTTCTTGATTCAAAGAATT+AGG + Chr4:19249149-19249168 MsG0480019377.01.T01:intron 25.0%
! TTGATTAATAATTATGCTGC+AGG + Chr4:19249108-19249127 MsG0480019377.01.T01:intron 25.0%
! TTTATGATATAAGAATCTGG+AGG + Chr4:19251170-19251189 MsG0480019377.01.T01:three_prime_UTR 25.0%
!! GACAACTGAGTAATTTTATA+TGG + Chr4:19249819-19249838 MsG0480019377.01.T01:intron 25.0%
!! TCTTGAGACAAATTTTGAAT+TGG + Chr4:19251102-19251121 MsG0480019377.01.T01:CDS 25.0%
!!! AAAAAGTCCTTGACATTTTT+TGG + Chr4:19251252-19251271 MsG0480019377.01.T01:three_prime_UTR 25.0%
!!! AGATGTTCATAAGTTGTTTT+CGG - Chr4:19249997-19250016 None:intergenic 25.0%
!!! TAAGCTTTATTGACTTCTTA+GGG + Chr4:19251329-19251348 MsG0480019377.01.T01:three_prime_UTR 25.0%
!!! TTTGTTGATTCAGATGTATT+TGG + Chr4:19250897-19250916 MsG0480019377.01.T01:intron 25.0%
!!! TTTTATGCCACTTATAATAC+CGG + Chr4:19250752-19250771 MsG0480019377.01.T01:intron 25.0%
AAAATGAGCAATGGTATCAT+AGG - Chr4:19248997-19249016 None:intergenic 30.0%
AAATCGACATTAGCATATTC+GGG - Chr4:19251037-19251056 None:intergenic 30.0%
AACCACTTACATCATCTTTA+AGG - Chr4:19250427-19250446 None:intergenic 30.0%
AATTGAGTAAACTTCAGAGA+GGG - Chr4:19251083-19251102 None:intergenic 30.0%
ATACCAAAATGCATAGTGAA+AGG - Chr4:19250707-19250726 None:intergenic 30.0%
ATACTGTTTGAGAAAGCTTA+TGG - Chr4:19250032-19250051 None:intergenic 30.0%
ATTATGCCTCCAATAGAATT+GGG - Chr4:19250127-19250146 None:intergenic 30.0%
ATTGGCTGTAGTTTCAATAT+TGG + Chr4:19249701-19249720 MsG0480019377.01.T01:intron 30.0%
CATTATTGTCATGTCAACAA+AGG + Chr4:19249590-19249609 MsG0480019377.01.T01:intron 30.0%
CTATGAACCAAAAAATGTCA+AGG - Chr4:19251262-19251281 None:intergenic 30.0%
CTTGATTCAAAGAATTAGGA+GGG + Chr4:19249153-19249172 MsG0480019377.01.T01:intron 30.0%
GAAATCGACATTAGCATATT+CGG - Chr4:19251038-19251057 None:intergenic 30.0%
GAATGAATGTCACAAAATAG+TGG + Chr4:19251351-19251370 MsG0480019377.01.T01:three_prime_UTR 30.0%
TACTTACAACTATTCAGAGT+TGG + Chr4:19249260-19249279 MsG0480019377.01.T01:intron 30.0%
TATTATGCCTCCAATAGAAT+TGG - Chr4:19250128-19250147 None:intergenic 30.0%
TCAACCAAATGAAGTAGTAA+TGG + Chr4:19250392-19250411 MsG0480019377.01.T01:intron 30.0%
TCTTGATTCAAAGAATTAGG+AGG + Chr4:19249152-19249171 MsG0480019377.01.T01:intron 30.0%
TGGAAAATATGTGCATAGAA+TGG - Chr4:19250869-19250888 None:intergenic 30.0%
TTGATTCAAAGAATTAGGAG+GGG + Chr4:19249154-19249173 MsG0480019377.01.T01:intron 30.0%
TTGGCTGTAGTTTCAATATT+GGG + Chr4:19249702-19249721 MsG0480019377.01.T01:intron 30.0%
TTTACAAGCAATCACACTAT+GGG - Chr4:19250666-19250685 None:intergenic 30.0%
TTTACATTACACAATTGGGT+TGG + Chr4:19249289-19249308 MsG0480019377.01.T01:intron 30.0%
TTTCAAATTATTAGCGGTGT+CGG + Chr4:19249396-19249415 MsG0480019377.01.T01:intron 30.0%
TTTCACAACAAAATCCAGAA+AGG + Chr4:19250576-19250595 MsG0480019377.01.T01:intron 30.0%
! AAAAGCAGATGAACCTTTTA+AGG - Chr4:19250102-19250121 None:intergenic 30.0%
! ATTGAACTAACAGGTTTTTC+TGG + Chr4:19250149-19250168 MsG0480019377.01.T01:intron 30.0%
! GATTCAGATGTATTTGGAAT+TGG + Chr4:19250903-19250922 MsG0480019377.01.T01:intron 30.0%
! GTCTACTAGTTAGAACTTTT+AGG - Chr4:19250603-19250622 None:intergenic 30.0%
! TTTTACAAGCAATCACACTA+TGG - Chr4:19250667-19250686 None:intergenic 30.0%
!! CATTGCTCATTTTGAAAAAC+AGG + Chr4:19249004-19249023 MsG0480019377.01.T01:CDS 30.0%
!! CTGTTTTTCAAAATGAGCAA+TGG - Chr4:19249006-19249025 None:intergenic 30.0%
!! GTAAGCTTTATTGACTTCTT+AGG + Chr4:19251328-19251347 MsG0480019377.01.T01:three_prime_UTR 30.0%
!! TTGATTTGCAATAAGGATGA+GGG + Chr4:19250778-19250797 MsG0480019377.01.T01:intron 30.0%
!! TTTGATTTGCAATAAGGATG+AGG + Chr4:19250777-19250796 MsG0480019377.01.T01:intron 30.0%
!!! ACATTTTTTGGTTCATAGGT+GGG + Chr4:19251264-19251283 MsG0480019377.01.T01:three_prime_UTR 30.0%
!!! CTTGACATTTTTTGGTTCAT+AGG + Chr4:19251260-19251279 MsG0480019377.01.T01:three_prime_UTR 30.0%
!!! TGCTTTTTTCCCAATTCTAT+TGG + Chr4:19250115-19250134 MsG0480019377.01.T01:intron 30.0%
!!! TTTTTTCATGACCTTACATG+AGG - Chr4:19251233-19251252 None:intergenic 30.0%
!!! TTTTTTCCCAATTCTATTGG+AGG + Chr4:19250118-19250137 MsG0480019377.01.T01:intron 30.0%
ACAACACTGAATATGAAGCA+CGG - Chr4:19249445-19249464 None:intergenic 35.0%
ACTGCATATCTGTTCTCTTT+GGG + Chr4:19250365-19250384 MsG0480019377.01.T01:intron 35.0%
AGCCTTAAAGATGATGTAAG+TGG + Chr4:19250422-19250441 MsG0480019377.01.T01:intron 35.0%
ATAGCCGCTATTAACAACAT+TGG + Chr4:19249531-19249550 MsG0480019377.01.T01:intron 35.0%
ATGATATAAGAATCTGGAGG+AGG + Chr4:19251173-19251192 MsG0480019377.01.T01:three_prime_UTR 35.0%
ATTTATTCCACCAACGCTTT+GGG + Chr4:19249208-19249227 MsG0480019377.01.T01:intron 35.0%
CAAATGAAGTAGTAATGGTC+GGG + Chr4:19250397-19250416 MsG0480019377.01.T01:intron 35.0%
CAAGCCAATGTTGTTAATAG+CGG - Chr4:19249538-19249557 None:intergenic 35.0%
CATGTCAACAAAGGTTTGTA+TGG + Chr4:19249599-19249618 MsG0480019377.01.T01:intron 35.0%
CCAAATGAAGTAGTAATGGT+CGG + Chr4:19250396-19250415 MsG0480019377.01.T01:intron 35.0%
CCTTATTGCAAATCAAATGC+CGG - Chr4:19250774-19250793 None:intergenic 35.0%
CGATTTCAAACCAGATTTCA+AGG + Chr4:19251051-19251070 MsG0480019377.01.T01:CDS 35.0%
GAAAGATATTGCTTCAAGCT+GGG - Chr4:19250847-19250866 None:intergenic 35.0%
GAATTGAGTAAACTTCAGAG+AGG - Chr4:19251084-19251103 None:intergenic 35.0%
GATTGTTCATTTGTACCCAA+AGG - Chr4:19250507-19250526 None:intergenic 35.0%
GCACAGATTGCAAAAAATAG+TGG + Chr4:19249468-19249487 MsG0480019377.01.T01:intron 35.0%
GTATTACTACCAGCATGATT+TGG - Chr4:19249043-19249062 None:intergenic 35.0%
TACTGCATATCTGTTCTCTT+TGG + Chr4:19250364-19250383 MsG0480019377.01.T01:intron 35.0%
TCAAATGCCGGTATTATAAG+TGG - Chr4:19250762-19250781 None:intergenic 35.0%
TCTTGAAACTCATTGATCAC+TGG + Chr4:19248949-19248968 MsG0480019377.01.T01:CDS 35.0%
TGTAAAAGAACCCTATGACT+CGG + Chr4:19250680-19250699 MsG0480019377.01.T01:intron 35.0%
TTTATTCCTCACCTCATGTA+AGG + Chr4:19251219-19251238 MsG0480019377.01.T01:three_prime_UTR 35.0%
! AAGCTATCTTAGAGAGCTTT+TGG + Chr4:19249964-19249983 MsG0480019377.01.T01:intron 35.0%
! ATTTTCTCCAGCATTAAGCA+GGG + Chr4:19250309-19250328 MsG0480019377.01.T01:intron 35.0%
! CAGATGTATTTGGAATTGGA+TGG + Chr4:19250907-19250926 MsG0480019377.01.T01:intron 35.0%
! GTAAAAGGAATTTGAGACTG+TGG + Chr4:19249790-19249809 MsG0480019377.01.T01:intron 35.0%
!! TAGAACTTTTAGGTCCTTTC+TGG - Chr4:19250593-19250612 None:intergenic 35.0%
!!! GACATTTTTTGGTTCATAGG+TGG + Chr4:19251263-19251282 MsG0480019377.01.T01:three_prime_UTR 35.0%
AAAATGTAATCGCAGCAACG+AGG - Chr4:19250294-19250313 None:intergenic 40.0%
AAGCCATAATTGTCCACCTT+TGG + Chr4:19250488-19250507 MsG0480019377.01.T01:intron 40.0%
ACTTGTCTGCTTGATCAAAC+TGG + Chr4:19250998-19251017 MsG0480019377.01.T01:CDS 40.0%
AGAGAACAGATATGCAGTAG+TGG - Chr4:19250363-19250382 None:intergenic 40.0%
AGCCATAATTGTCCACCTTT+GGG + Chr4:19250489-19250508 MsG0480019377.01.T01:intron 40.0%
AGGGAAGTTACCTTGAAATC+TGG - Chr4:19251064-19251083 None:intergenic 40.0%
AGTACTGCTTTGTACATGGA+AGG - Chr4:19248876-19248895 None:intergenic 40.0%
ATGGAAGGGAAATCAATGAC+GGG - Chr4:19248861-19248880 None:intergenic 40.0%
CATAAATAAGTGCCTGCACA+GGG + Chr4:19250812-19250831 MsG0480019377.01.T01:intron 40.0%
CATATTCATGGCTCATCGTA+TGG + Chr4:19250195-19250214 MsG0480019377.01.T01:intron 40.0%
CATGGAAGGGAAATCAATGA+CGG - Chr4:19248862-19248881 None:intergenic 40.0%
CCGACCATTACTACTTCATT+TGG - Chr4:19250399-19250418 None:intergenic 40.0%
CTGAATATGAAGCACGGATA+CGG - Chr4:19249439-19249458 None:intergenic 40.0%
GACACGGACACAATAATTTG+AGG - Chr4:19249341-19249360 None:intergenic 40.0%
GATTTATTCCACCAACGCTT+TGG + Chr4:19249207-19249226 MsG0480019377.01.T01:intron 40.0%
GCGAACAAAACTTGAGATCA+TGG - Chr4:19251130-19251149 None:intergenic 40.0%
GGAAAGATATTGCTTCAAGC+TGG - Chr4:19250848-19250867 None:intergenic 40.0%
GTACTGCTTTGTACATGGAA+GGG - Chr4:19248875-19248894 None:intergenic 40.0%
TACCCAAAGGTGGACAATTA+TGG - Chr4:19250494-19250513 None:intergenic 40.0%
TCATAAATAAGTGCCTGCAC+AGG + Chr4:19250811-19250830 MsG0480019377.01.T01:intron 40.0%
TCCACAAGCAATCTGCAAAA+TGG - Chr4:19250960-19250979 None:intergenic 40.0%
TCCATGTACAAAGCAGTACT+CGG + Chr4:19248876-19248895 MsG0480019377.01.T01:CDS 40.0%
TGTTCATTTGTACCCAAAGG+TGG - Chr4:19250504-19250523 None:intergenic 40.0%
TTAGGAGGGGTTTGATTACA+AGG + Chr4:19249167-19249186 MsG0480019377.01.T01:intron 40.0%
! ACCATTTTGCAGATTGCTTG+TGG + Chr4:19250956-19250975 MsG0480019377.01.T01:intron 40.0%
! ATTTTGCAGATTGCTTGTGG+AGG + Chr4:19250959-19250978 MsG0480019377.01.T01:intron 40.0%
! CATTTTCTCCAGCATTAAGC+AGG + Chr4:19250308-19250327 MsG0480019377.01.T01:intron 40.0%
! CGCTATTAACAACATTGGCT+TGG + Chr4:19249536-19249555 MsG0480019377.01.T01:intron 40.0%
! GAAGAGAAGGAAAGCTTTTG+CGG - Chr4:19248757-19248776 None:intergenic 40.0%
! GAATTTGAGACTGTGGCATT+TGG + Chr4:19249797-19249816 MsG0480019377.01.T01:intron 40.0%
! GGTCCTTTCACTATGCATTT+TGG + Chr4:19250701-19250720 MsG0480019377.01.T01:intron 40.0%
! TTACTACCAGCATGATTTGG+AGG - Chr4:19249040-19249059 None:intergenic 40.0%
! TTGTATTAGTGTGTCGGTGT+CGG - Chr4:19249363-19249382 None:intergenic 40.0%
! TTTTGCAGATTGCTTGTGGA+GGG + Chr4:19250960-19250979 MsG0480019377.01.T01:intron 40.0%
!! CCGGCATTTGATTTGCAATA+AGG + Chr4:19250771-19250790 MsG0480019377.01.T01:intron 40.0%
!! TCAAGATATCGATTCCAGCA+GGG - Chr4:19248935-19248954 None:intergenic 40.0%
!! TTCAAGATATCGATTCCAGC+AGG - Chr4:19248936-19248955 None:intergenic 40.0%
AGTGAAAGGACCGAGTCATA+GGG - Chr4:19250693-19250712 None:intergenic 45.0%
ATGAAGCACGGATACGGATA+CGG - Chr4:19249433-19249452 None:intergenic 45.0%
CGAAATTCCCTGCTTAATGC+TGG - Chr4:19250319-19250338 None:intergenic 45.0%
GAGCAATGGTATCATAGGCT+TGG - Chr4:19248992-19249011 None:intergenic 45.0%
GAGGAGGTGACATCTACATT+TGG + Chr4:19251189-19251208 MsG0480019377.01.T01:three_prime_UTR 45.0%
GAGGTGACATCTACATTTGG+AGG + Chr4:19251192-19251211 MsG0480019377.01.T01:three_prime_UTR 45.0%
GGTGGTTAAGTGTGATGACA+TGG - Chr4:19248787-19248806 None:intergenic 45.0%
GTAAAACTGACCCAAAGCGT+TGG - Chr4:19249221-19249240 None:intergenic 45.0%
GTCTGCTTGATCAAACTGGA+AGG + Chr4:19251002-19251021 MsG0480019377.01.T01:CDS 45.0%
TAGTGAAAGGACCGAGTCAT+AGG - Chr4:19250694-19250713 None:intergenic 45.0%
TCATGACCTTACATGAGGTG+AGG - Chr4:19251228-19251247 None:intergenic 45.0%
TGGAAGGGAAATCAATGACG+GGG - Chr4:19248860-19248879 None:intergenic 45.0%
TGGAGCTGGATCAGGTTATA+AGG - Chr4:19250343-19250362 None:intergenic 45.0%
!!! CGCGTGGACCATTTATTTTG+TGG + Chr4:19251147-19251166 MsG0480019377.01.T01:three_prime_UTR 45.0%
!!! GATCTCAAGTTTTGTTCGCG+TGG + Chr4:19251131-19251150 MsG0480019377.01.T01:exon 45.0%
AAGTGTGATGACATGGTGCG+TGG - Chr4:19248780-19248799 None:intergenic 50.0%
AGTGTGATGACATGGTGCGT+GGG - Chr4:19248779-19248798 None:intergenic 50.0%
CATGGCTCATCGTATGGTGA+AGG + Chr4:19250201-19250220 MsG0480019377.01.T01:intron 50.0%
CGATCACCTCCAAATCATGC+TGG + Chr4:19249031-19249050 MsG0480019377.01.T01:CDS 50.0%
TAGGCTTGGCGTTGTTGATG+TGG - Chr4:19248978-19248997 None:intergenic 50.0%
! AGGGAAATCAATGACGGGGA+CGG - Chr4:19248856-19248875 None:intergenic 50.0%
! ATCGATTCCAGCAGGGTTTG+AGG - Chr4:19248928-19248947 None:intergenic 50.0%
! CAGATATGCAGTAGTGGAGC+TGG - Chr4:19250357-19250376 None:intergenic 50.0%
! GCCGAGTACTGCTTTGTACA+TGG - Chr4:19248880-19248899 None:intergenic 50.0%
! GCTTTTGCGGAAGAGAGCAA+TGG - Chr4:19248744-19248763 None:intergenic 50.0%
!! AAACTGACCCAAAGCGTTGG+TGG - Chr4:19249218-19249237 None:intergenic 50.0%
ACATGGTGCGTGGGAAGAGA+AGG - Chr4:19248770-19248789 None:intergenic 55.0%
CCATGTCGAAAACGACGCCA+CGG - Chr4:19248821-19248840 None:intergenic 55.0%
GGGTTGAAGTTACCCTGTGC+AGG - Chr4:19250827-19250846 None:intergenic 55.0%
GTCAAAGCCTCAAACCCTGC+TGG + Chr4:19248918-19248937 MsG0480019377.01.T01:CDS 55.0%
! TGCAGTAGTGGAGCTGGATC+AGG - Chr4:19250351-19250370 None:intergenic 55.0%
!! GGCGTCGTTTTCGACATGGA+CGG + Chr4:19248822-19248841 MsG0480019377.01.T01:CDS 55.0%
!! TAGTGTGTCGGTGTCGGACA+CGG - Chr4:19249357-19249376 None:intergenic 55.0%
ATTGCTTGTGGAGGGCGAGC+AGG + Chr4:19250968-19250987 MsG0480019377.01.T01:CDS 60.0%
TGTCGAAAACGACGCCACGG+AGG - Chr4:19248818-19248837 None:intergenic 60.0%
!! CCGTGGCGTCGTTTTCGACA+TGG + Chr4:19248818-19248837 MsG0480019377.01.T01:CDS 60.0%
ACCACCAAAACGCGCCTCCG+TGG + Chr4:19248801-19248820 MsG0480019377.01.T01:CDS 65.0%
!! GACGCCACGGAGGCGCGTTT+TGG - Chr4:19248808-19248827 None:intergenic 70.0%
!! GCCACGGAGGCGCGTTTTGG+TGG - Chr4:19248805-19248824 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 19248738 19251379 19248738 ID=MsG0480019377.01;Name=MsG0480019377.01
Chr4 mRNA 19248738 19251379 19248738 ID=MsG0480019377.01.T01;Parent=MsG0480019377.01;Name=MsG0480019377.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|0|0.5|2|247|160
Chr4 exon 19248738 19249055 19248738 ID=MsG0480019377.01.T01:exon:9352;Parent=MsG0480019377.01.T01
Chr4 exon 19250968 19251379 19250968 ID=MsG0480019377.01.T01:exon:9353;Parent=MsG0480019377.01.T01
Chr4 CDS 19248738 19249055 19248738 ID=MsG0480019377.01.T01:cds;Parent=MsG0480019377.01.T01
Chr4 CDS 19250968 19251132 19250968 ID=MsG0480019377.01.T01:cds;Parent=MsG0480019377.01.T01
Chr4 three_prime_UTR 19251133 19251379 19251133 ID=MsG0480019377.01.T01:three_prime_utr;Parent=MsG0480019377.01.T01
Gene Sequence

>MsG0480019377.01.T01

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCTGGTAATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>MsG0480019377.01.T01

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMLVIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*