AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015668.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015668.01.T01 MTR_3g074490 90.955 398 15 4 1 394 1 381 0.0 661
MsG0380015668.01.T01 MTR_8g090210 60.050 398 125 7 7 394 2 375 1.61e-149 429
MsG0380015668.01.T01 MTR_3g107510 35.526 304 165 6 95 394 95 371 1.85e-47 167
MsG0380015668.01.T01 MTR_3g107510 28.415 183 127 2 129 307 216 398 2.62e-18 86.3
MsG0380015668.01.T01 MTR_1g012030 35.842 279 149 5 123 394 133 388 1.48e-44 159
MsG0380015668.01.T01 MTR_1g012030 29.143 175 120 2 129 299 233 407 3.15e-17 83.2
MsG0380015668.01.T01 MTR_4g114320 36.232 276 152 5 123 394 117 372 5.03e-43 155
MsG0380015668.01.T01 MTR_4g114320 28.488 172 120 2 131 299 220 391 6.45e-17 82.4
MsG0380015668.01.T01 MTR_7g068340 35.472 265 131 9 140 393 98 333 9.06e-36 135
MsG0380015668.01.T01 MTR_7g068340 27.692 195 135 3 128 321 186 375 1.23e-16 81.3
MsG0380015668.01.T01 MTR_7g064980 29.195 298 165 7 124 397 20 295 5.60e-34 129
MsG0380015668.01.T01 MTR_7g064980 24.631 203 135 5 109 300 117 312 7.33e-13 69.3
MsG0380015668.01.T01 MTR_5g081150 30.508 295 161 7 125 397 30 302 1.15e-31 122
MsG0380015668.01.T01 MTR_8g096050 31.884 276 160 7 126 393 224 479 4.93e-30 121
MsG0380015668.01.T01 MTR_8g096050 25.405 185 130 3 125 301 317 501 2.17e-14 75.1
MsG0380015668.01.T01 MTR_8g027975 29.450 309 175 6 114 393 36 330 2.39e-29 117
MsG0380015668.01.T01 MTR_8g027975 26.131 199 121 4 128 300 153 351 3.07e-18 85.9
MsG0380015668.01.T01 MTR_5g009500 30.508 295 162 7 127 393 36 315 7.36e-29 115
MsG0380015668.01.T01 MTR_5g009500 26.009 223 141 4 102 300 114 336 8.34e-19 87.4
MsG0380015668.01.T01 MTR_4g119770 27.000 300 171 7 131 394 16 303 2.39e-27 111
MsG0380015668.01.T01 MTR_4g119770 27.273 198 120 5 131 305 131 327 1.52e-16 80.5
MsG0380015668.01.T01 MTR_3g098460 28.777 278 170 8 124 393 200 457 3.76e-27 112
MsG0380015668.01.T01 MTR_3g098460 24.309 181 129 3 129 301 299 479 5.03e-13 70.9
MsG0380015668.01.T01 MTR_7g084400 27.737 274 169 6 127 393 211 462 7.38e-27 112
MsG0380015668.01.T01 MTR_7g084400 25.843 178 125 3 129 301 309 484 2.95e-14 74.7
MsG0380015668.01.T01 MTR_7g084400 28.652 178 107 4 219 394 210 369 1.56e-12 69.3
MsG0380015668.01.T01 MTR_4g016730 32.342 269 131 9 140 393 100 332 8.10e-27 110
MsG0380015668.01.T01 MTR_4g016730 24.631 203 139 4 116 318 183 371 8.39e-11 63.5
MsG0380015668.01.T01 MTR_6g091800 28.223 287 162 6 127 391 17 281 2.24e-26 108
MsG0380015668.01.T01 MTR_4g119770 27.626 257 150 5 131 363 16 260 3.46e-26 106
MsG0380015668.01.T01 MTR_2g436930 27.152 302 166 9 131 394 17 302 7.38e-26 107
MsG0380015668.01.T01 MTR_2g436930 26.263 198 122 4 131 305 130 326 5.77e-17 81.6
MsG0380015668.01.T01 MTR_6g091800 29.249 253 140 5 127 362 17 247 7.67e-25 103
MsG0380015668.01.T01 MTR_8g107270 29.181 281 151 10 135 391 24 280 9.87e-25 103
MsG0380015668.01.T01 MTR_3g104500 27.217 327 190 9 94 397 2 303 1.57e-24 103
MsG0380015668.01.T01 MTR_6g091800 29.249 253 140 5 127 362 17 247 1.73e-24 102
MsG0380015668.01.T01 MTR_3g104600 26.333 300 170 5 127 397 33 310 1.03e-23 101
MsG0380015668.01.T01 MTR_5g081150 33.505 194 114 4 125 303 30 223 1.91e-23 99.0
MsG0380015668.01.T01 MTR_5g081150 33.505 194 114 4 125 303 30 223 2.03e-23 98.6
MsG0380015668.01.T01 MTR_6g091800 26.045 311 162 6 127 391 17 305 5.01e-23 99.0
MsG0380015668.01.T01 MTR_6g091800 26.045 311 162 6 127 391 17 305 6.40e-23 99.0
MsG0380015668.01.T01 MTR_4g005330 24.199 281 171 6 131 390 2 261 1.18e-21 94.7
MsG0380015668.01.T01 MTR_4g005330 24.199 281 171 5 131 390 68 327 1.34e-21 95.5
MsG0380015668.01.T01 MTR_6g091800 26.715 277 140 5 127 362 17 271 2.23e-21 94.0
MsG0380015668.01.T01 MTR_6g091800 26.715 277 140 5 127 362 17 271 4.04e-21 92.8
MsG0380015668.01.T01 MTR_7g084400 29.834 181 118 3 127 300 205 383 5.35e-20 91.7
MsG0380015668.01.T01 MTR_7g084400 28.652 178 107 4 219 394 204 363 1.02e-12 69.7
MsG0380015668.01.T01 MTR_6g034145 26.939 245 138 5 166 391 5 227 5.90e-20 89.0
MsG0380015668.01.T01 MTR_8g098240 25.362 276 178 5 127 398 318 569 9.03e-20 91.7
MsG0380015668.01.T01 MTR_8g098240 25.843 178 127 3 128 302 412 587 3.04e-15 77.8
MsG0380015668.01.T01 MTR_4g078545 28.269 283 155 11 132 390 78 336 2.57e-18 86.3
MsG0380015668.01.T01 MTR_3g028590 27.915 283 156 12 132 390 96 354 1.49e-17 84.0
MsG0380015668.01.T01 MTR_3g028590 27.915 283 156 12 132 390 100 358 1.67e-17 84.0
MsG0380015668.01.T01 MTR_2g436930 26.263 198 122 4 131 305 40 236 2.10e-17 81.3
MsG0380015668.01.T01 MTR_2g436930 26.222 225 129 8 191 394 4 212 3.59e-13 69.3
MsG0380015668.01.T01 MTR_6g092210 24.268 239 146 4 166 391 5 221 5.57e-17 80.5
MsG0380015668.01.T01 MTR_8g036880 27.465 284 157 10 132 390 105 364 4.23e-16 79.7
MsG0380015668.01.T01 MTR_6g091800 33.094 139 86 2 127 258 17 155 6.42e-16 75.9
MsG0380015668.01.T01 MTR_4g057850 27.014 211 133 5 109 302 97 303 1.51e-15 77.4
MsG0380015668.01.T01 MTR_4g057850 22.378 286 178 10 131 397 24 284 3.01e-11 64.3
MsG0380015668.01.T01 MTR_6g091800 34.146 123 78 1 127 246 17 139 1.85e-15 75.1
MsG0380015668.01.T01 MTR_2g098070 27.407 270 148 11 145 390 82 327 1.47e-14 74.7
MsG0380015668.01.T01 MTR_5g030530 27.419 248 147 8 163 397 50 277 2.19e-14 73.6
MsG0380015668.01.T01 MTR_8g092080 27.746 173 122 3 128 299 132 302 2.54e-14 73.9
MsG0380015668.01.T01 MTR_3g100570 25.543 184 126 4 126 299 125 307 8.22e-14 72.0
MsG0380015668.01.T01 MTR_8g066975 26.613 248 149 8 163 397 50 277 1.33e-13 71.2
MsG0380015668.01.T01 MTR_7g015870 23.106 264 173 8 148 396 46 294 1.52e-12 68.6
MsG0380015668.01.T01 MTR_1g097890 23.529 187 138 4 128 311 131 315 1.56e-12 68.2
MsG0380015668.01.T01 MTR_5g073040 27.778 198 123 6 119 302 123 314 1.72e-12 68.2
MsG0380015668.01.T01 MTR_7g109135 29.834 181 98 5 224 394 24 185 1.81e-12 68.2
MsG0380015668.01.T01 MTR_7g109135 25.271 277 170 9 131 390 24 280 5.10e-11 63.9
MsG0380015668.01.T01 MTR_7g015870 23.396 265 171 9 148 396 42 290 2.73e-12 67.8
MsG0380015668.01.T01 MTR_1g095780 26.667 165 118 3 145 309 630 791 6.78e-12 67.8
MsG0380015668.01.T01 MTR_5g055410 26.415 265 162 6 141 390 33 279 1.78e-11 65.5
MsG0380015668.01.T01 MTR_7g066690 23.239 284 179 6 131 397 19 280 2.16e-11 64.7
MsG0380015668.01.T01 MTR_4g018750 22.648 287 177 8 131 397 17 278 3.15e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015668.01.T01 AT5G64970 66.384 354 109 6 47 394 51 400 2.24e-154 442
MsG0380015668.01.T01 AT5G64970 66.384 354 109 6 47 394 51 400 3.23e-154 442
MsG0380015668.01.T01 AT5G64970 74.340 265 68 0 130 394 12 276 6.66e-143 409
MsG0380015668.01.T01 AT1G78180 61.497 374 124 5 30 394 31 393 7.96e-138 400
MsG0380015668.01.T01 AT4G32400 33.696 276 159 5 123 394 108 363 5.73e-40 147
MsG0380015668.01.T01 AT4G32400 26.857 175 124 2 129 299 208 382 2.80e-15 77.4
MsG0380015668.01.T01 AT3G53940 31.757 296 156 7 125 397 69 341 1.60e-38 142
MsG0380015668.01.T01 AT3G53940 21.978 182 129 4 128 299 179 357 2.40e-12 68.2
MsG0380015668.01.T01 AT2G37890 30.847 295 160 7 125 397 41 313 1.15e-37 139
MsG0380015668.01.T01 AT2G37890 22.703 185 132 4 124 299 147 329 5.53e-12 67.0
MsG0380015668.01.T01 AT3G55640 31.081 296 160 7 124 397 33 306 2.93e-37 138
MsG0380015668.01.T01 AT3G55640 22.632 190 138 4 118 299 134 322 1.00e-12 68.9
MsG0380015668.01.T01 AT3G55640 31.081 296 160 7 124 397 33 306 2.93e-37 138
MsG0380015668.01.T01 AT3G55640 22.632 190 138 4 118 299 134 322 1.00e-12 68.9
MsG0380015668.01.T01 AT3G51870 33.208 265 137 10 140 393 102 337 5.03e-33 127
MsG0380015668.01.T01 AT3G51870 27.225 191 135 3 128 318 190 376 1.60e-15 77.8
MsG0380015668.01.T01 AT5G01500 34.717 265 133 10 140 393 130 365 2.44e-32 126
MsG0380015668.01.T01 AT5G01500 26.866 201 141 3 128 327 218 413 8.27e-15 75.9
MsG0380015668.01.T01 AT4G01100 29.940 334 182 9 96 393 4 321 6.15e-31 121
MsG0380015668.01.T01 AT4G01100 25.778 225 141 4 102 300 118 342 1.79e-17 83.6
MsG0380015668.01.T01 AT4G26180 28.966 290 157 9 127 391 19 284 1.89e-30 119
MsG0380015668.01.T01 AT4G26180 28.966 290 157 9 127 391 19 284 3.34e-30 119
MsG0380015668.01.T01 AT3G53940 32.850 207 123 4 125 315 69 275 4.12e-29 115
MsG0380015668.01.T01 AT4G01100 29.598 348 179 10 96 393 4 335 4.22e-29 116
MsG0380015668.01.T01 AT4G01100 26.131 199 121 4 128 300 158 356 4.11e-16 79.7
MsG0380015668.01.T01 AT3G55640 34.536 194 112 4 124 302 33 226 4.25e-29 114
MsG0380015668.01.T01 AT3G55640 34.536 194 112 4 124 302 33 226 4.25e-29 114
MsG0380015668.01.T01 AT5G61810 29.137 278 165 6 126 397 62 313 6.70e-29 115
MsG0380015668.01.T01 AT5G61810 23.913 184 131 4 124 301 151 331 2.00e-11 65.1
MsG0380015668.01.T01 AT5G51050 29.348 276 164 5 126 393 220 472 1.37e-28 117
MsG0380015668.01.T01 AT5G51050 27.749 191 128 4 118 301 307 494 1.65e-14 75.5
MsG0380015668.01.T01 AT5G61810 29.137 278 165 6 126 397 205 456 3.49e-28 115
MsG0380015668.01.T01 AT5G61810 24.590 183 129 4 125 301 295 474 2.27e-11 65.9
MsG0380015668.01.T01 AT4G01100 30.662 287 152 8 138 393 1 271 5.18e-27 109
MsG0380015668.01.T01 AT4G01100 25.778 225 141 4 102 300 68 292 7.06e-18 84.0
MsG0380015668.01.T01 AT3G20240 26.690 281 164 8 131 390 54 313 7.95e-25 104
MsG0380015668.01.T01 AT3G20240 26.966 178 127 2 131 305 165 342 4.49e-12 67.4
MsG0380015668.01.T01 AT5G07320 29.008 262 154 6 138 393 218 453 1.04e-24 105
MsG0380015668.01.T01 AT5G07320 25.683 183 127 5 125 301 296 475 2.17e-13 72.0
MsG0380015668.01.T01 AT5G48970 27.152 302 169 8 131 394 24 312 2.61e-24 102
MsG0380015668.01.T01 AT5G48970 23.762 202 125 6 131 305 137 336 1.55e-13 71.6
MsG0380015668.01.T01 AT5G56450 27.759 299 165 9 127 397 32 307 1.23e-22 98.2
MsG0380015668.01.T01 AT1G14560 29.630 243 130 5 140 363 38 258 3.46e-22 96.3
MsG0380015668.01.T01 AT1G14560 29.630 243 130 5 140 363 38 258 3.87e-22 96.7
MsG0380015668.01.T01 AT3G21390 26.087 253 159 6 131 363 21 265 5.09e-21 93.6
MsG0380015668.01.T01 AT3G21390 22.680 194 123 3 131 297 132 325 1.41e-13 71.6
MsG0380015668.01.T01 AT3G21390 25.263 285 179 7 99 363 17 287 5.12e-21 94.0
MsG0380015668.01.T01 AT3G21390 22.680 194 123 3 131 297 154 347 1.95e-13 71.6
MsG0380015668.01.T01 AT5G48970 27.711 249 146 7 167 394 6 241 1.91e-20 90.5
MsG0380015668.01.T01 AT5G48970 23.762 202 125 6 131 305 66 265 8.51e-14 71.6
MsG0380015668.01.T01 AT4G28390 27.562 283 157 10 132 390 86 344 1.20e-18 87.4
MsG0380015668.01.T01 AT4G28390 27.562 283 157 10 132 390 86 344 1.20e-18 87.4
MsG0380015668.01.T01 AT4G11440 26.259 278 179 6 127 398 328 585 3.45e-18 87.0
MsG0380015668.01.T01 AT4G11440 24.444 180 129 3 128 300 422 601 1.19e-11 67.0
MsG0380015668.01.T01 AT4G11440 26.259 278 179 6 127 398 328 585 3.45e-18 87.0
MsG0380015668.01.T01 AT4G11440 24.444 180 129 3 128 300 422 601 1.19e-11 67.0
MsG0380015668.01.T01 AT3G08580 27.181 298 167 11 118 390 74 346 5.05e-16 79.3
MsG0380015668.01.T01 AT3G08580 27.181 298 167 11 118 390 74 346 5.05e-16 79.3
MsG0380015668.01.T01 AT5G13490 26.174 298 170 12 118 390 78 350 1.28e-15 78.2
MsG0380015668.01.T01 AT5G13490 26.174 298 170 12 118 390 78 350 1.28e-15 78.2
MsG0380015668.01.T01 AT5G17400 27.675 271 148 10 145 391 30 276 4.28e-15 75.9
MsG0380015668.01.T01 AT4G39460 27.136 199 128 5 128 321 138 324 7.77e-15 75.5
MsG0380015668.01.T01 AT4G39460 27.136 199 128 5 128 321 138 324 7.77e-15 75.5
MsG0380015668.01.T01 AT4G39460 27.136 199 128 5 128 321 138 324 7.77e-15 75.5
MsG0380015668.01.T01 AT5G46800 26.482 253 144 8 164 397 51 280 1.91e-14 73.9
MsG0380015668.01.T01 AT5G46800 26.482 253 144 8 164 397 51 280 1.91e-14 73.9
MsG0380015668.01.T01 AT5G46800 26.482 253 144 8 164 397 51 280 1.91e-14 73.9
MsG0380015668.01.T01 AT1G79900 26.816 179 124 4 132 306 113 288 4.33e-14 72.8
MsG0380015668.01.T01 AT5G26200 23.214 280 176 8 141 395 51 316 4.97e-14 73.2
MsG0380015668.01.T01 AT1G34065 26.554 177 127 3 124 299 158 332 8.82e-14 72.4
MsG0380015668.01.T01 AT1G34065 26.554 177 127 3 124 299 151 325 9.72e-14 72.4
MsG0380015668.01.T01 AT5G09470 24.571 175 128 1 122 292 148 322 1.26e-13 72.0
MsG0380015668.01.T01 AT3G54110 23.322 283 176 7 133 397 19 278 1.35e-13 71.6
MsG0380015668.01.T01 AT5G58970 22.340 282 180 6 133 397 20 279 1.73e-13 71.2
MsG0380015668.01.T01 AT1G07030 25.521 192 134 3 120 302 125 316 5.88e-13 69.7
MsG0380015668.01.T01 AT2G26360 28.070 171 119 4 134 303 210 377 3.85e-12 67.8
MsG0380015668.01.T01 AT4G24570 26.289 194 129 6 109 292 111 300 8.98e-12 66.2
MsG0380015668.01.T01 AT1G14560 29.444 180 89 4 200 363 3 160 1.07e-11 64.7
MsG0380015668.01.T01 AT5G01340 22.491 289 175 10 131 397 19 280 1.77e-11 65.1
MsG0380015668.01.T01 AT1G25380 28.571 238 141 7 162 390 63 280 4.40e-11 64.3
MsG0380015668.01.T01 AT1G25380 28.571 238 141 7 162 390 63 280 4.40e-11 64.3
MsG0380015668.01.T01 AT2G30160 25.128 195 134 4 120 302 127 321 6.85e-11 63.5

Find 96 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGGGTTGAAGAAAA+TGG 0.186752 3:-73361739 None:intergenic
AAACCGTTTGTATTGCAAAA+TGG 0.262834 3:+73361948 MsG0380015668.01.T01:CDS
TTTATTGCTGGTGCTGCTGC+TGG 0.268529 3:+73363477 MsG0380015668.01.T01:CDS
CTATATCTGCAATGGTTTCT+AGG 0.274328 3:+73362084 MsG0380015668.01.T01:CDS
AGCAATAAACCTCTCAAAAT+TGG 0.279930 3:-73363463 None:intergenic
GACTTATCCCAGCTTATTAC+AGG 0.284599 3:+73364559 MsG0380015668.01.T01:CDS
TTGATTTGATTTATCGGAAA+TGG 0.293776 3:-73361631 None:intergenic
GCGGAACCCTTCGCCGTTGC+CGG 0.298464 3:-73361863 None:intergenic
GCCTTTGATCAGCTAGAGTT+GGG 0.301546 3:+73364360 MsG0380015668.01.T01:CDS
ATAATACTACTAAGCATCTT+TGG 0.303243 3:+73362054 MsG0380015668.01.T01:CDS
ATATCTTTGATTTGATTTAT+CGG 0.304257 3:-73361637 None:intergenic
CTTGATTCTTTGCTTTCCTT+CGG 0.314639 3:-73364307 None:intergenic
CCATGCAACAATGTCCTTAC+TGG 0.315349 3:-73364384 None:intergenic
GAAACTTTGGGTGGTGTAAT+TGG 0.334173 3:+73364144 MsG0380015668.01.T01:CDS
TCCGCCAGGTGCCACTATCT+TGG 0.344178 3:-73364121 None:intergenic
TTGATTCTTTGCTTTCCTTC+GGG 0.346752 3:-73364306 None:intergenic
GGTGTCAAACGGTGTCGTTT+TGG 0.355217 3:+73361995 MsG0380015668.01.T01:CDS
TTGTTGCATGGGGCTATTGC+TGG 0.364598 3:+73364396 MsG0380015668.01.T01:CDS
CGGTTCGCAGAATATTTAGA+AGG 0.372550 3:-73363359 None:intergenic
TGCCTCCTCACCACTTCAAA+TGG 0.377301 3:-73364444 None:intergenic
CTCGTTATTCATCATATCTA+TGG 0.383525 3:+73361559 MsG0380015668.01.T01:five_prime_UTR
GGCACCTGGCGGAGAAACTT+TGG 0.384109 3:+73364131 MsG0380015668.01.T01:CDS
AAACAACTACTTAGATTCTC+TGG 0.390111 3:+73363426 MsG0380015668.01.T01:CDS
CTTCAGTTTGAATCATGTAT+TGG 0.396950 3:-73364173 None:intergenic
TTATTGCTGGTGCTGCTGCT+GGG 0.413053 3:+73363478 MsG0380015668.01.T01:CDS
CCATAAAAGACTGCACTAGA+AGG 0.436323 3:-73364246 None:intergenic
GAATTGGGGTTGAAGAAAAT+GGG 0.436592 3:-73361738 None:intergenic
GCACCTGGCGGAGAAACTTT+GGG 0.438440 3:+73364132 MsG0380015668.01.T01:CDS
TGCCTTTGATCAGCTAGAGT+TGG 0.440567 3:+73364359 MsG0380015668.01.T01:CDS
TTCAACCCCAATTCCAATCC+CGG 0.453864 3:+73361747 MsG0380015668.01.T01:CDS
GGCATTTCAGCCCTCTATGC+AGG 0.455367 3:+73364537 MsG0380015668.01.T01:CDS
ATTTAATACCTGTAATAAGC+TGG 0.455738 3:-73364567 None:intergenic
TGGTGAAGATGTTTCTGATA+AGG 0.457238 3:+73361968 MsG0380015668.01.T01:CDS
TGAAGATTTGATTCCGATGA+AGG 0.461304 3:-73361837 None:intergenic
AAGAACTTAATTTAGTAGAC+TGG 0.463964 3:-73364482 None:intergenic
CCCCTCCGGGATTGGAATTG+GGG 0.473569 3:-73361752 None:intergenic
GGAAGATTAGTAGTACTATT+CGG 0.474460 3:-73361915 None:intergenic
AGCTAGAGTTGGGGCCAGTA+AGG 0.478052 3:+73364370 MsG0380015668.01.T01:CDS
GTCTGGTGCTATATCTGCAA+TGG 0.484581 3:+73362076 MsG0380015668.01.T01:CDS
CAGTAAGGACATTGTTGCAT+GGG 0.487811 3:+73364385 MsG0380015668.01.T01:CDS
AAGTCAATTGCTACAACTCA+AGG 0.489182 3:+73363312 MsG0380015668.01.T01:CDS
GGAAATGGAAAATGAATAGC+TGG 0.497074 3:-73361616 None:intergenic
TTCACCACCGGCAACGGCGA+AGG 0.501185 3:+73361856 MsG0380015668.01.T01:CDS
ACCACTTGAAAGACTTAAGC+TGG 0.503394 3:+73363245 MsG0380015668.01.T01:CDS
CCAGTAAGGACATTGTTGCA+TGG 0.504976 3:+73364384 MsG0380015668.01.T01:CDS
GAATATGCATAAACATGGGC+AGG 0.505465 3:+73364329 MsG0380015668.01.T01:CDS
CGGCGAAGGGTTCCGCCGGT+TGG 0.505530 3:+73361870 MsG0380015668.01.T01:CDS
ACTACTAAGCATCTTTGGTC+TGG 0.506671 3:+73362059 MsG0380015668.01.T01:CDS
CAAATCTTCACCACCGGCAA+CGG 0.524130 3:+73361850 MsG0380015668.01.T01:CDS
GCCTCCTCACCACTTCAAAT+GGG 0.526042 3:-73364443 None:intergenic
AAGCTGGAATATATTGTTCG+TGG 0.526261 3:+73363261 MsG0380015668.01.T01:CDS
ATAGATTCGGACCAAGATAG+TGG 0.529404 3:+73364110 MsG0380015668.01.T01:intron
TATTGCTGGTGCTGCTGCTG+GGG 0.530538 3:+73363479 MsG0380015668.01.T01:CDS
ACTTAGATTCTCTGGAAATG+AGG 0.532399 3:+73363434 MsG0380015668.01.T01:CDS
TTCGTTACGAATTCCTTCAT+CGG 0.533641 3:+73361824 MsG0380015668.01.T01:CDS
TTTAATACCTGTAATAAGCT+GGG 0.539659 3:-73364566 None:intergenic
GAACCCTTCGCCGTTGCCGG+TGG 0.544177 3:-73361860 None:intergenic
TCACCACCGGCAACGGCGAA+GGG 0.548312 3:+73361857 MsG0380015668.01.T01:CDS
TGGGATAAGTCCTGCATAGA+GGG 0.551122 3:-73364547 None:intergenic
GATAAGGAGACGGTGTCAAA+CGG 0.552442 3:+73361984 MsG0380015668.01.T01:CDS
CCCAATTCCAATCCCGGAGG+GGG 0.553381 3:+73361753 MsG0380015668.01.T01:CDS
CTGGGATAAGTCCTGCATAG+AGG 0.559763 3:-73364548 None:intergenic
ATCAAGAATATGCATAAACA+TGG 0.565369 3:+73364324 MsG0380015668.01.T01:CDS
CCACCCAAAGTTTCTCCGCC+AGG 0.569871 3:-73364135 None:intergenic
AGTACCATCACTTATAAGCA+TGG 0.578373 3:+73364221 MsG0380015668.01.T01:CDS
CGGAATCAAATCTTCACCAC+CGG 0.579518 3:+73361844 MsG0380015668.01.T01:CDS
GCTACAACTCAAGGTTTGAG+AGG 0.579884 3:+73363321 MsG0380015668.01.T01:CDS
CAATACATGATTCAAACTGA+AGG 0.582238 3:+73364174 MsG0380015668.01.T01:CDS
ATATTGTTCGTGGTGAGAAG+AGG 0.584013 3:+73363271 MsG0380015668.01.T01:CDS
TCCAGCTTAAGTCTTTCAAG+TGG 0.587617 3:-73363246 None:intergenic
GGAGCCATGCTTATAAGTGA+TGG 0.588027 3:-73364225 None:intergenic
CCCCAACTCTAGCTGATCAA+AGG 0.592324 3:-73364361 None:intergenic
TTTGTCAAAATTGTGGAACA+AGG 0.592430 3:+73364513 MsG0380015668.01.T01:CDS
TCTTATCTGCATTCACCCGA+AGG 0.594846 3:+73364291 MsG0380015668.01.T01:CDS
ACCCATTTGAAGTGGTGAGG+AGG 0.596577 3:+73364442 MsG0380015668.01.T01:CDS
ACCCCAATTCCAATCCCGGA+GGG 0.598956 3:+73361751 MsG0380015668.01.T01:CDS
TGCTACATACCCATTTGAAG+TGG 0.602917 3:+73364434 MsG0380015668.01.T01:CDS
CGGACCAAGATAGTGGCACC+TGG 0.603892 3:+73364117 MsG0380015668.01.T01:CDS
TCACCACGTACAGTATCAAG+TGG 0.614556 3:-73363525 None:intergenic
AAATGGGAAGAGAATGTGAA+TGG 0.619907 3:-73361722 None:intergenic
CTAAAATTAACAGCTTTGAA+CGG 0.620147 3:-73363384 None:intergenic
GTCAAAATTGTGGAACAAGG+AGG 0.624778 3:+73364516 MsG0380015668.01.T01:CDS
CACGTACAGTATCAAGTGGA+AGG 0.625172 3:-73363521 None:intergenic
CCCCAATTCCAATCCCGGAG+GGG 0.625308 3:+73361752 MsG0380015668.01.T01:CDS
GCAACGGCGAAGGGTTCCGC+CGG 0.627687 3:+73361866 MsG0380015668.01.T01:CDS
CCTTTGATCAGCTAGAGTTG+GGG 0.635456 3:+73364361 MsG0380015668.01.T01:CDS
TCAAGAATATGCATAAACAT+GGG 0.635732 3:+73364325 MsG0380015668.01.T01:CDS
AGATGTTTCTGATAAGGAGA+CGG 0.648470 3:+73361974 MsG0380015668.01.T01:CDS
CATACCCATTTGAAGTGGTG+AGG 0.653731 3:+73364439 MsG0380015668.01.T01:CDS
TGGGAAGAGAATGTGAATGG+TGG 0.669990 3:-73361719 None:intergenic
AGTAAGGACATTGTTGCATG+GGG 0.675534 3:+73364386 MsG0380015668.01.T01:CDS
AACCCCAATTCCAATCCCGG+AGG 0.678704 3:+73361750 MsG0380015668.01.T01:CDS
AAGGTTAGGGCTAGAGAACG+CGG 0.685827 3:+73362023 MsG0380015668.01.T01:CDS
CCTGGCGGAGAAACTTTGGG+TGG 0.690555 3:+73364135 MsG0380015668.01.T01:CDS
ACCAAGATAGTGGCACCTGG+CGG 0.692494 3:+73364120 MsG0380015668.01.T01:CDS
ATTAACAGCTTTGAACGGAG+CGG 0.702918 3:-73363379 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGTAACAAAAACAAATA+AGG - Chr3:73364036-73364055 None:intergenic 15.0%
!! TCTAAATAAATAATCAAATG+TGG - Chr3:73363173-73363192 None:intergenic 15.0%
!!! ATATCTTTGATTTGATTTAT+CGG - Chr3:73361640-73361659 None:intergenic 15.0%
!!! ATTAAGTTGTTTATCTAAAT+AGG + Chr3:73362738-73362757 MsG0380015668.01.T01:intron 15.0%
!!! TTAAGTTGTTTATCTAAATA+GGG + Chr3:73362739-73362758 MsG0380015668.01.T01:intron 15.0%
!!! TTATTTTTACTAGCTTATAA+TGG - Chr3:73362486-73362505 None:intergenic 15.0%
!! AAACACAGAAAAAATATAAG+TGG - Chr3:73362937-73362956 None:intergenic 20.0%
!! ATTAAATCAAGATGATTACT+AGG - Chr3:73363137-73363156 None:intergenic 20.0%
!! GTTTATATATTTGCAATGTT+TGG + Chr3:73362327-73362346 MsG0380015668.01.T01:intron 20.0%
!! TAGTAATCATCTTGATTTAA+TGG + Chr3:73363136-73363155 MsG0380015668.01.T01:intron 20.0%
!!! AAAGAAACCCTTATTTTTAT+CGG + Chr3:73362604-73362623 MsG0380015668.01.T01:intron 20.0%
!!! TAAATTGTTTGAAACTCTTA+CGG + Chr3:73362788-73362807 MsG0380015668.01.T01:intron 20.0%
!!! TAGGTATAATTTGTTTCATA+TGG + Chr3:73363861-73363880 MsG0380015668.01.T01:intron 20.0%
!!! TTAAGTTCTTTAACTTTCTT+TGG + Chr3:73363665-73363684 MsG0380015668.01.T01:intron 20.0%
! AAACTATTTATGCAAAACAG+AGG - Chr3:73363828-73363847 None:intergenic 25.0%
! AACAGGATATCAAACATATT+TGG - Chr3:73363944-73363963 None:intergenic 25.0%
! AAGAACTTAATTTAGTAGAC+TGG - Chr3:73364485-73364504 None:intergenic 25.0%
! AATGAAACGAAAAAAGGAAT+CGG - Chr3:73361805-73361824 None:intergenic 25.0%
! ATAATACTACTAAGCATCTT+TGG + Chr3:73362054-73362073 MsG0380015668.01.T01:CDS 25.0%
! ATCAAGAATATGCATAAACA+TGG + Chr3:73364324-73364343 MsG0380015668.01.T01:CDS 25.0%
! ATGTGCAAGTTTATTCAATT+GGG - Chr3:73363586-73363605 None:intergenic 25.0%
! GTAACAAAAACAAATAAGGT+TGG - Chr3:73364032-73364051 None:intergenic 25.0%
! TAACGAAATGAAACGAAAAA+AGG - Chr3:73361811-73361830 None:intergenic 25.0%
! TCAAGAATATGCATAAACAT+GGG + Chr3:73364325-73364344 MsG0380015668.01.T01:CDS 25.0%
! TGTTGTAACATGCATTTATT+TGG + Chr3:73364001-73364020 MsG0380015668.01.T01:intron 25.0%
! TTGACTAAAAAAAACTCGTT+TGG - Chr3:73362538-73362557 None:intergenic 25.0%
!! AAAATATAAGTGGAGTTTTG+AGG - Chr3:73362927-73362946 None:intergenic 25.0%
!! TCTTTAACTTTCTTTGGTTA+AGG + Chr3:73363671-73363690 MsG0380015668.01.T01:intron 25.0%
!! TGAACTAGCTTATAAATATG+AGG + Chr3:73362363-73362382 MsG0380015668.01.T01:intron 25.0%
!! TTGATTTGATTTATCGGAAA+TGG - Chr3:73361634-73361653 None:intergenic 25.0%
!!! CTAAAATTAACAGCTTTGAA+CGG - Chr3:73363387-73363406 None:intergenic 25.0%
!!! TCATAAGTTGATTTCAACTT+AGG + Chr3:73362191-73362210 MsG0380015668.01.T01:intron 25.0%
AAACAACTACTTAGATTCTC+TGG + Chr3:73363426-73363445 MsG0380015668.01.T01:CDS 30.0%
AAACCGTTTGTATTGCAAAA+TGG + Chr3:73361948-73361967 MsG0380015668.01.T01:CDS 30.0%
AATCAAGATGATTACTAGGA+TGG - Chr3:73363133-73363152 None:intergenic 30.0%
ACAAAAACAAATAAGGTTGG+AGG - Chr3:73364029-73364048 None:intergenic 30.0%
AGAAACAAGAAACACAAGTT+AGG + Chr3:73362980-73362999 MsG0380015668.01.T01:intron 30.0%
AGCAATAAACCTCTCAAAAT+TGG - Chr3:73363466-73363485 None:intergenic 30.0%
AGGAACATATATGGATACAA+GGG - Chr3:73363808-73363827 None:intergenic 30.0%
ATGAAACGAAAAAAGGAATC+GGG - Chr3:73361804-73361823 None:intergenic 30.0%
ATTGTATTTGTGAGACTAGT+TGG + Chr3:73362143-73362162 MsG0380015668.01.T01:intron 30.0%
CAATACATGATTCAAACTGA+AGG + Chr3:73364174-73364193 MsG0380015668.01.T01:CDS 30.0%
CAGAAATAGCTTATGAAAAC+AGG + Chr3:73362631-73362650 MsG0380015668.01.T01:intron 30.0%
CATGTGCAAGTTTATTCAAT+TGG - Chr3:73363587-73363606 None:intergenic 30.0%
CTCGTTATTCATCATATCTA+TGG + Chr3:73361559-73361578 MsG0380015668.01.T01:five_prime_UTR 30.0%
CTTATTGAATTTGCAGTGTT+TGG + Chr3:73362284-73362303 MsG0380015668.01.T01:intron 30.0%
CTTCAGTTTGAATCATGTAT+TGG - Chr3:73364176-73364195 None:intergenic 30.0%
GGAAGATTAGTAGTACTATT+CGG - Chr3:73361918-73361937 None:intergenic 30.0%
TACTGTGTGTCTTATAGATT+CGG + Chr3:73364097-73364116 MsG0380015668.01.T01:intron 30.0%
TCTTACAACACATACCATTA+TGG - Chr3:73363977-73363996 None:intergenic 30.0%
TCTTTCTAGGTAGAAGTTTA+TGG + Chr3:73362821-73362840 MsG0380015668.01.T01:intron 30.0%
TTTAGGCAAAATCTAAGTGT+TGG + Chr3:73363079-73363098 MsG0380015668.01.T01:intron 30.0%
TTTGTCAAAATTGTGGAACA+AGG + Chr3:73364513-73364532 MsG0380015668.01.T01:CDS 30.0%
! AGCAACTTTTGTCAAAATTG+TGG + Chr3:73364506-73364525 MsG0380015668.01.T01:CDS 30.0%
! CTATCTGAAATTCTGCTAAA+TGG + Chr3:73363197-73363216 MsG0380015668.01.T01:intron 30.0%
! TCACCATTTTGCAATACAAA+CGG - Chr3:73361954-73361973 None:intergenic 30.0%
! TGTTTGAAGTACTTCCATAA+TGG + Chr3:73363960-73363979 MsG0380015668.01.T01:intron 30.0%
!! AATTTTGAGAGGTTTATTGC+TGG + Chr3:73363465-73363484 MsG0380015668.01.T01:CDS 30.0%
!! ATTATGGAAGTACTTCAAAC+AGG - Chr3:73363961-73363980 None:intergenic 30.0%
!! CGTTTTGGATAAAAAGGTTA+GGG + Chr3:73362010-73362029 MsG0380015668.01.T01:CDS 30.0%
!! TCGTTTTGGATAAAAAGGTT+AGG + Chr3:73362009-73362028 MsG0380015668.01.T01:CDS 30.0%
!!! CAATACAAACGGTTTTGAAT+CGG - Chr3:73361943-73361962 None:intergenic 30.0%
AAAAAAGGAATCGGGAATTG+AGG - Chr3:73361796-73361815 None:intergenic 35.0%
AAAAAGGAATCGGGAATTGA+GGG - Chr3:73361795-73361814 None:intergenic 35.0%
AAATAGGGCCATAGTCTATA+TGG + Chr3:73362754-73362773 MsG0380015668.01.T01:intron 35.0%
AAATGAGCTTACAAGACGTA+AGG + Chr3:73362556-73362575 MsG0380015668.01.T01:intron 35.0%
AAATGGGAAGAGAATGTGAA+TGG - Chr3:73361725-73361744 None:intergenic 35.0%
AAGCTGGAATATATTGTTCG+TGG + Chr3:73363261-73363280 MsG0380015668.01.T01:CDS 35.0%
AAGTCAATTGCTACAACTCA+AGG + Chr3:73363312-73363331 MsG0380015668.01.T01:CDS 35.0%
AATAGGGCCATAGTCTATAT+GGG + Chr3:73362755-73362774 MsG0380015668.01.T01:intron 35.0%
ACACATTCAGCATAATCACT+TGG + Chr3:73364068-73364087 MsG0380015668.01.T01:intron 35.0%
AGTACCATCACTTATAAGCA+TGG + Chr3:73364221-73364240 MsG0380015668.01.T01:CDS 35.0%
ATGAACATGACTATTGATCG+TGG + Chr3:73363604-73363623 MsG0380015668.01.T01:intron 35.0%
ATTTCAACTTAGGCTCTGTT+TGG + Chr3:73362201-73362220 MsG0380015668.01.T01:intron 35.0%
CTATATCTGCAATGGTTTCT+AGG + Chr3:73362084-73362103 MsG0380015668.01.T01:CDS 35.0%
CTGCAAGCCGATAAAAATAA+GGG - Chr3:73362614-73362633 None:intergenic 35.0%
CTTGATTCTTTGCTTTCCTT+CGG - Chr3:73364310-73364329 None:intergenic 35.0%
GAACATATATGGATACAAGG+GGG - Chr3:73363806-73363825 None:intergenic 35.0%
GAATTGGGGTTGAAGAAAAT+GGG - Chr3:73361741-73361760 None:intergenic 35.0%
GAGGAACATATATGGATACA+AGG - Chr3:73363809-73363828 None:intergenic 35.0%
GATTGCGATACTAATCCAAT+GGG + Chr3:73362861-73362880 MsG0380015668.01.T01:intron 35.0%
GCAAAACAGAGGAACATATA+TGG - Chr3:73363817-73363836 None:intergenic 35.0%
GGAAATGGAAAATGAATAGC+TGG - Chr3:73361619-73361638 None:intergenic 35.0%
GGAACATATATGGATACAAG+GGG - Chr3:73363807-73363826 None:intergenic 35.0%
TCTGCAAGCCGATAAAAATA+AGG - Chr3:73362615-73362634 None:intergenic 35.0%
TCTTTGGTTAAGGAGACATT+TGG + Chr3:73363681-73363700 MsG0380015668.01.T01:intron 35.0%
TGAAGATTTGATTCCGATGA+AGG - Chr3:73361840-73361859 None:intergenic 35.0%
TGATTGCGATACTAATCCAA+TGG + Chr3:73362860-73362879 MsG0380015668.01.T01:intron 35.0%
TTCGTTACGAATTCCTTCAT+CGG + Chr3:73361824-73361843 MsG0380015668.01.T01:CDS 35.0%
TTGATTCTTTGCTTTCCTTC+GGG - Chr3:73364309-73364328 None:intergenic 35.0%
! ACTTAGATTCTCTGGAAATG+AGG + Chr3:73363434-73363453 MsG0380015668.01.T01:CDS 35.0%
! AGATGTTTCTGATAAGGAGA+CGG + Chr3:73361974-73361993 MsG0380015668.01.T01:CDS 35.0%
! AGGAAACTACCAATTTTGAG+AGG + Chr3:73363454-73363473 MsG0380015668.01.T01:CDS 35.0%
! AGGCATCTTTTCTCTATACA+AGG + Chr3:73364194-73364213 MsG0380015668.01.T01:CDS 35.0%
! GAAACGTCATGCTTTATTGA+AGG - Chr3:73363759-73363778 None:intergenic 35.0%
! GGCATCTTTTCTCTATACAA+GGG + Chr3:73364195-73364214 MsG0380015668.01.T01:CDS 35.0%
! TGGTGAAGATGTTTCTGATA+AGG + Chr3:73361968-73361987 MsG0380015668.01.T01:CDS 35.0%
! TTAAGGAGACATTTGGAGTT+TGG + Chr3:73363688-73363707 MsG0380015668.01.T01:intron 35.0%
! TTTGTTGTCGTTGAAGCTTT+AGG + Chr3:73363062-73363081 MsG0380015668.01.T01:intron 35.0%
AACATGGTCCCATAATCACA+TGG - Chr3:73363901-73363920 None:intergenic 40.0%
ACAGTGAGTCCATGTGATTA+TGG + Chr3:73363889-73363908 MsG0380015668.01.T01:intron 40.0%
ACCACTTGAAAGACTTAAGC+TGG + Chr3:73363245-73363264 MsG0380015668.01.T01:CDS 40.0%
ACCGACAAAAAACAACCAAC+CGG - Chr3:73361888-73361907 None:intergenic 40.0%
ACTACTAAGCATCTTTGGTC+TGG + Chr3:73362059-73362078 MsG0380015668.01.T01:CDS 40.0%
ACTGTCTTAGCTGTAAGGAT+AGG + Chr3:73363005-73363024 MsG0380015668.01.T01:intron 40.0%
AGTAAGGACATTGTTGCATG+GGG + Chr3:73364386-73364405 MsG0380015668.01.T01:CDS 40.0%
ATAGATTCGGACCAAGATAG+TGG + Chr3:73364110-73364129 MsG0380015668.01.T01:intron 40.0%
ATATTGTTCGTGGTGAGAAG+AGG + Chr3:73363271-73363290 MsG0380015668.01.T01:CDS 40.0%
CACATTCGACAAGAAGTTCA+AGG - Chr3:73363036-73363055 None:intergenic 40.0%
CAGTAAGGACATTGTTGCAT+GGG + Chr3:73364385-73364404 MsG0380015668.01.T01:CDS 40.0%
CAGTGAGTCCATGTGATTAT+GGG + Chr3:73363890-73363909 MsG0380015668.01.T01:intron 40.0%
CCATAAAAGACTGCACTAGA+AGG - Chr3:73364249-73364268 None:intergenic 40.0%
CGGTTCGCAGAATATTTAGA+AGG - Chr3:73363362-73363381 None:intergenic 40.0%
CTGTCTTAGCTGTAAGGATA+GGG + Chr3:73363006-73363025 MsG0380015668.01.T01:intron 40.0%
CTTGAACTTCTTGTCGAATG+TGG + Chr3:73363034-73363053 MsG0380015668.01.T01:intron 40.0%
GAAACTCTTACGGTAGATGT+TGG + Chr3:73362798-73362817 MsG0380015668.01.T01:intron 40.0%
GAAACTTTGGGTGGTGTAAT+TGG + Chr3:73364144-73364163 MsG0380015668.01.T01:CDS 40.0%
GAATATGCATAAACATGGGC+AGG + Chr3:73364329-73364348 MsG0380015668.01.T01:CDS 40.0%
GACTTATCCCAGCTTATTAC+AGG + Chr3:73364559-73364578 MsG0380015668.01.T01:CDS 40.0%
GGAATTGGGGTTGAAGAAAA+TGG - Chr3:73361742-73361761 None:intergenic 40.0%
GTATCGCAATCATGAAGAGA+AGG - Chr3:73362852-73362871 None:intergenic 40.0%
GTCAAAATTGTGGAACAAGG+AGG + Chr3:73364516-73364535 MsG0380015668.01.T01:CDS 40.0%
TCCAGCTTAAGTCTTTCAAG+TGG - Chr3:73363249-73363268 None:intergenic 40.0%
TGCTACATACCCATTTGAAG+TGG + Chr3:73364434-73364453 MsG0380015668.01.T01:CDS 40.0%
TGTTAGTAGCTGAAATCAGC+AGG + Chr3:73363917-73363936 MsG0380015668.01.T01:intron 40.0%
! CCTTCTAGTGCAGTCTTTTA+TGG + Chr3:73364246-73364265 MsG0380015668.01.T01:CDS 40.0%
! CTCAAGGTTTGAGAGGTTTT+TGG + Chr3:73363328-73363347 MsG0380015668.01.T01:CDS 40.0%
! GAAGTGTTTCATGTGGTCTA+CGG - Chr3:73363109-73363128 None:intergenic 40.0%
! GCATTGACCCATATAGACTA+TGG - Chr3:73362765-73362784 None:intergenic 40.0%
! GCTGATAAACTAGCTTGTAG+CGG + Chr3:73362245-73362264 MsG0380015668.01.T01:intron 40.0%
! GCTGATTTCAGCTACTAACA+TGG - Chr3:73363917-73363936 None:intergenic 40.0%
!! AGGTTTGAGAGGTTTTTGGA+AGG + Chr3:73363332-73363351 MsG0380015668.01.T01:CDS 40.0%
!! ATTAACAGCTTTGAACGGAG+CGG - Chr3:73363382-73363401 None:intergenic 40.0%
!! GCGGGTTAGGCAAAAAAATA+AGG + Chr3:73362885-73362904 MsG0380015668.01.T01:intron 40.0%
!! GGTTTGAGAGGTTTTTGGAA+GGG + Chr3:73363333-73363352 MsG0380015668.01.T01:CDS 40.0%
!! GTTTGAGAGGTTTTTGGAAG+GGG + Chr3:73363334-73363353 MsG0380015668.01.T01:CDS 40.0%
!!! CGGTGTCGTTTTGGATAAAA+AGG + Chr3:73362004-73362023 MsG0380015668.01.T01:CDS 40.0%
!!! TACAAACGGTTTTGAATCGG+CGG - Chr3:73361940-73361959 None:intergenic 40.0%
AGGTCACTGTCTTAGCTGTA+AGG + Chr3:73363000-73363019 MsG0380015668.01.T01:intron 45.0%
CACGTACAGTATCAAGTGGA+AGG - Chr3:73363524-73363543 None:intergenic 45.0%
CCAGTAAGGACATTGTTGCA+TGG + Chr3:73364384-73364403 MsG0380015668.01.T01:CDS 45.0%
CCATGCAACAATGTCCTTAC+TGG - Chr3:73364387-73364406 None:intergenic 45.0%
CCTTTGATCAGCTAGAGTTG+GGG + Chr3:73364361-73364380 MsG0380015668.01.T01:CDS 45.0%
CGATACTAATCCAATGGGTG+CGG + Chr3:73362866-73362885 MsG0380015668.01.T01:intron 45.0%
CGGAATCAAATCTTCACCAC+CGG + Chr3:73361844-73361863 MsG0380015668.01.T01:CDS 45.0%
CTTCCACTTGATACTGTACG+TGG + Chr3:73363522-73363541 MsG0380015668.01.T01:intron 45.0%
GACAAAAAACAACCAACCGG+CGG - Chr3:73361885-73361904 None:intergenic 45.0%
GATACTAATCCAATGGGTGC+GGG + Chr3:73362867-73362886 MsG0380015668.01.T01:intron 45.0%
GCCTTTGATCAGCTAGAGTT+GGG + Chr3:73364360-73364379 MsG0380015668.01.T01:CDS 45.0%
GCTACAACTCAAGGTTTGAG+AGG + Chr3:73363321-73363340 MsG0380015668.01.T01:CDS 45.0%
GGAGCCATGCTTATAAGTGA+TGG - Chr3:73364228-73364247 None:intergenic 45.0%
TCACCACGTACAGTATCAAG+TGG - Chr3:73363528-73363547 None:intergenic 45.0%
TCTTATCTGCATTCACCCGA+AGG + Chr3:73364291-73364310 MsG0380015668.01.T01:CDS 45.0%
TGCCTTTGATCAGCTAGAGT+TGG + Chr3:73364359-73364378 MsG0380015668.01.T01:CDS 45.0%
TGGGAAGAGAATGTGAATGG+TGG - Chr3:73361722-73361741 None:intergenic 45.0%
TGGGATAAGTCCTGCATAGA+GGG - Chr3:73364550-73364569 None:intergenic 45.0%
TTCAACCCCAATTCCAATCC+CGG + Chr3:73361747-73361766 MsG0380015668.01.T01:CDS 45.0%
! CATACCCATTTGAAGTGGTG+AGG + Chr3:73364439-73364458 MsG0380015668.01.T01:CDS 45.0%
! GATAAGGAGACGGTGTCAAA+CGG + Chr3:73361984-73362003 MsG0380015668.01.T01:CDS 45.0%
!! CGGTAGATGTTGGTCTTTCT+AGG + Chr3:73362808-73362827 MsG0380015668.01.T01:intron 45.0%
!! GGATGGAGAAGTGTTTCATG+TGG - Chr3:73363116-73363135 None:intergenic 45.0%
!! GTCTGGTGCTATATCTGCAA+TGG + Chr3:73362076-73362095 MsG0380015668.01.T01:CDS 45.0%
!!! ACAAACGGTTTTGAATCGGC+GGG - Chr3:73361939-73361958 None:intergenic 45.0%
!!! GCCGGTTGGTTGTTTTTTGT+CGG + Chr3:73361884-73361903 MsG0380015668.01.T01:CDS 45.0%
!! TAGTTTAATAAAAAAATAAT+AGG + Chr3:73363842-73363861 MsG0380015668.01.T01:intron 5.0%
AAGGTTAGGGCTAGAGAACG+CGG + Chr3:73362023-73362042 MsG0380015668.01.T01:CDS 50.0%
CAAATCTTCACCACCGGCAA+CGG + Chr3:73361850-73361869 MsG0380015668.01.T01:CDS 50.0%
CCCCAACTCTAGCTGATCAA+AGG - Chr3:73364364-73364383 None:intergenic 50.0%
CTGGGATAAGTCCTGCATAG+AGG - Chr3:73364551-73364570 None:intergenic 50.0%
GCCTCCTCACCACTTCAAAT+GGG - Chr3:73364446-73364465 None:intergenic 50.0%
GTGTTTCATGTGGTCTACGG+TGG - Chr3:73363106-73363125 None:intergenic 50.0%
TAATCCAATGGGTGCGGGTT+AGG + Chr3:73362872-73362891 MsG0380015668.01.T01:intron 50.0%
TGCCTCCTCACCACTTCAAA+TGG - Chr3:73364447-73364466 None:intergenic 50.0%
TTGTTGCATGGGGCTATTGC+TGG + Chr3:73364396-73364415 MsG0380015668.01.T01:CDS 50.0%
! ACCCATTTGAAGTGGTGAGG+AGG + Chr3:73364442-73364461 MsG0380015668.01.T01:CDS 50.0%
!! TTATTGCTGGTGCTGCTGCT+GGG + Chr3:73363478-73363497 MsG0380015668.01.T01:CDS 50.0%
!! TTTATTGCTGGTGCTGCTGC+TGG + Chr3:73363477-73363496 MsG0380015668.01.T01:CDS 50.0%
!!! GGTGTCAAACGGTGTCGTTT+TGG + Chr3:73361995-73362014 MsG0380015668.01.T01:CDS 50.0%
AACCCCAATTCCAATCCCGG+AGG + Chr3:73361750-73361769 MsG0380015668.01.T01:CDS 55.0%
ACCCCAATTCCAATCCCGGA+GGG + Chr3:73361751-73361770 MsG0380015668.01.T01:CDS 55.0%
AGAAATAAGCCTCCCCCTCC+GGG - Chr3:73361768-73361787 None:intergenic 55.0%
AGCTAGAGTTGGGGCCAGTA+AGG + Chr3:73364370-73364389 MsG0380015668.01.T01:CDS 55.0%
GAGAAATAAGCCTCCCCCTC+CGG - Chr3:73361769-73361788 None:intergenic 55.0%
GCACCTGGCGGAGAAACTTT+GGG + Chr3:73364132-73364151 MsG0380015668.01.T01:CDS 55.0%
GGCATTTCAGCCCTCTATGC+AGG + Chr3:73364537-73364556 MsG0380015668.01.T01:CDS 55.0%
TTTGCCTAACCCGCACCCAT+TGG - Chr3:73362879-73362898 None:intergenic 55.0%
! ACCAAGATAGTGGCACCTGG+CGG + Chr3:73364120-73364139 MsG0380015668.01.T01:CDS 55.0%
!! TATTGCTGGTGCTGCTGCTG+GGG + Chr3:73363479-73363498 MsG0380015668.01.T01:CDS 55.0%
AATTCCAATCCCGGAGGGGG+AGG + Chr3:73361756-73361775 MsG0380015668.01.T01:CDS 60.0%
CCACCCAAAGTTTCTCCGCC+AGG - Chr3:73364138-73364157 None:intergenic 60.0%
CCCAATTCCAATCCCGGAGG+GGG + Chr3:73361753-73361772 MsG0380015668.01.T01:CDS 60.0%
CCCCAATTCCAATCCCGGAG+GGG + Chr3:73361752-73361771 MsG0380015668.01.T01:CDS 60.0%
CCCCCTCCGGGATTGGAATT+GGG - Chr3:73361756-73361775 None:intergenic 60.0%
CCCCTCCGGGATTGGAATTG+GGG - Chr3:73361755-73361774 None:intergenic 60.0%
CCTGGCGGAGAAACTTTGGG+TGG + Chr3:73364135-73364154 MsG0380015668.01.T01:CDS 60.0%
GGCACCTGGCGGAGAAACTT+TGG + Chr3:73364131-73364150 MsG0380015668.01.T01:CDS 60.0%
TCCCCCTCCGGGATTGGAAT+TGG - Chr3:73361757-73361776 None:intergenic 60.0%
! CGGACCAAGATAGTGGCACC+TGG + Chr3:73364117-73364136 MsG0380015668.01.T01:CDS 60.0%
!! TCCGCCAGGTGCCACTATCT+TGG - Chr3:73364124-73364143 None:intergenic 60.0%
TAAGCCTCCCCCTCCGGGAT+TGG - Chr3:73361763-73361782 None:intergenic 65.0%
TCACCACCGGCAACGGCGAA+GGG + Chr3:73361857-73361876 MsG0380015668.01.T01:CDS 65.0%
TTCACCACCGGCAACGGCGA+AGG + Chr3:73361856-73361875 MsG0380015668.01.T01:CDS 65.0%
GAACCCTTCGCCGTTGCCGG+TGG - Chr3:73361863-73361882 None:intergenic 70.0%
GCAACGGCGAAGGGTTCCGC+CGG + Chr3:73361866-73361885 MsG0380015668.01.T01:CDS 70.0%
GCGGAACCCTTCGCCGTTGC+CGG - Chr3:73361866-73361885 None:intergenic 70.0%
CGGCGAAGGGTTCCGCCGGT+TGG + Chr3:73361870-73361889 MsG0380015668.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 73361541 73364587 73361541 ID=MsG0380015668.01;Name=MsG0380015668.01
Chr3 mRNA 73361541 73364587 73361541 ID=MsG0380015668.01.T01;Parent=MsG0380015668.01;Name=MsG0380015668.01.T01;_AED=0.41;_eAED=0.41;_QI=146|1|0.66|1|1|1|3|0|398
Chr3 exon 73361541 73362105 73361541 ID=MsG0380015668.01.T01:exon:24245;Parent=MsG0380015668.01.T01
Chr3 exon 73363233 73363536 73363233 ID=MsG0380015668.01.T01:exon:24246;Parent=MsG0380015668.01.T01
Chr3 exon 73364114 73364587 73364114 ID=MsG0380015668.01.T01:exon:24247;Parent=MsG0380015668.01.T01
Chr3 five_prime_UTR 73361541 73361686 73361541 ID=MsG0380015668.01.T01:five_prime_utr;Parent=MsG0380015668.01.T01
Chr3 CDS 73361687 73362105 73361687 ID=MsG0380015668.01.T01:cds;Parent=MsG0380015668.01.T01
Chr3 CDS 73363233 73363536 73363233 ID=MsG0380015668.01.T01:cds;Parent=MsG0380015668.01.T01
Chr3 CDS 73364114 73364587 73364114 ID=MsG0380015668.01.T01:cds;Parent=MsG0380015668.01.T01
Gene Sequence

>MsG0380015668.01.T01

ATGACGACAATGCTAGAAAGCAACATTTGCAACCACCATTCACATTCTCTTCCCATTTTCTTCAACCCCAATTCCAATCCCGGAGGGGGAGGCTTATTTCTCGAACCCTCAATTCCCGATTCCTTTTTTCGTTTCATTTCGTTACGAATTCCTTCATCGGAATCAAATCTTCACCACCGGCAACGGCGAAGGGTTCCGCCGGTTGGTTGTTTTTTGTCGGTTAGTTTACCGAATAGTACTACTAATCTTCCCGCCGATTCAAAACCGTTTGTATTGCAAAATGGTGAAGATGTTTCTGATAAGGAGACGGTGTCAAACGGTGTCGTTTTGGATAAAAAGGTTAGGGCTAGAGAACGCGGTGCTGTTAATAATACTACTAAGCATCTTTGGTCTGGTGCTATATCTGCAATGGTTTCTAGAACTTGTGTTGCACCACTTGAAAGACTTAAGCTGGAATATATTGTTCGTGGTGAGAAGAGGAATATCTTTGAGCTTATTAAGTCAATTGCTACAACTCAAGGTTTGAGAGGTTTTTGGAAGGGGAACCTTCTAAATATTCTGCGAACCGCTCCGTTCAAAGCTGTTAATTTTAGTGCTTACGACACATATAGAAAACAACTACTTAGATTCTCTGGAAATGAGGAAACTACCAATTTTGAGAGGTTTATTGCTGGTGCTGCTGCTGGGGTTACTGCTACTATTATTTGCCTTCCACTTGATACTATTCGGACCAAGATAGTGGCACCTGGCGGAGAAACTTTGGGTGGTGTAATTGGTGCTTTCCAATACATGATTCAAACTGAAGGCATCTTTTCTCTATACAAGGGTTTAGTACCATCACTTATAAGCATGGCTCCTTCTAGTGCAGTCTTTTATGGTGTATACGATATGCTAAAATCATCTTATCTGCATTCACCCGAAGGAAAGCAAAGAATCAAGAATATGCATAAACATGGGCAGGAACTGAGTGCCTTTGATCAGCTAGAGTTGGGGCCAGTAAGGACATTGTTGCATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACATACCCATTTGAAGTGGTGAGGAGGCAGCTTCAATTGCAAGTCCAGTCTACTAAATTAAGTTCTTTAGCAACTTTTGTCAAAATTGTGGAACAAGGAGGCATTTCAGCCCTCTATGCAGGACTTATCCCAGCTTATTACAGGTATTAA

Protein sequence

>MsG0380015668.01.T01

MTTMLESNICNHHSHSLPIFFNPNSNPGGGGLFLEPSIPDSFFRFISLRIPSSESNLHHRQRRRVPPVGCFLSVSLPNSTTNLPADSKPFVLQNGEDVSDKETVSNGVVLDKKVRARERGAVNNTTKHLWSGAISAMVSRTCVAPLERLKLEYIVRGEKRNIFELIKSIATTQGLRGFWKGNLLNILRTAPFKAVNFSAYDTYRKQLLRFSGNEETTNFERFIAGAAAGVTATIICLPLDTIRTKIVAPGGETLGGVIGAFQYMIQTEGIFSLYKGLVPSLISMAPSSAVFYGVYDMLKSSYLHSPEGKQRIKNMHKHGQELSAFDQLELGPVRTLLHGAIAGACAEAATYPFEVVRRQLQLQVQSTKLSSLATFVKIVEQGGISALYAGLIPAYYRY*