AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0237440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237440 MtrunA17_Chr2g0286841 91.520 342 24 2 1 337 1 342 0.0 551
Msa0237440 MtrunA17_Chr4g0066521 61.032 349 118 4 2 337 1 344 7.13e-129 372
Msa0237440 MtrunA17_Chr8g0358391 39.474 342 172 7 10 337 22 342 2.82e-59 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237440 AT4G15545.1 53.666 341 130 8 6 337 16 337 1.41e-103 308
Msa0237440 AT1G16520.1 37.389 337 184 5 10 337 7 325 9.60e-61 197
Msa0237440 AT1G56080.1 37.464 347 154 8 7 333 4 307 1.91e-56 186

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGATGAGCTCGTCTTTCT+TGG 0.207103 2_2:+10596975 None:intergenic
AAGAAAGCTGATGAGATCTT+TGG 0.305279 2_2:-10594950 Msa0237440:CDS
TAATGCGAGGAGTCGTAGTT+TGG 0.347026 2_2:+10595673 None:intergenic
TGTTCATTAAATTGATTCCT+AGG 0.365398 2_2:-10594876 Msa0237440:exon
TTCAGCAAGTGCAAGCTTAT+CGG 0.366407 2_2:+10596903 None:intergenic
AACAAATAATTATTGAAAGT+TGG 0.395684 2_2:+10595474 None:intergenic
GATCTGTATACTATATTTGA+AGG 0.396057 2_2:-10594914 Msa0237440:CDS
CATCGCAGAGCTGGAAGCTC+AGG 0.396506 2_2:-10596959 Msa0237440:CDS
CGGTTTCCCTTCAAATTGAC+AGG 0.406170 2_2:-10595569 Msa0237440:CDS
GCTGAAGTAGAGGAAATATC+AGG 0.423713 2_2:+10594845 None:intergenic
ATTTCCTGCATCAGAAGTAT+TGG 0.424653 2_2:+10595930 None:intergenic
TGCAGCTATGTTACATAGTC+AGG 0.425161 2_2:-10596118 Msa0237440:CDS
AGAAAGCTGATGAGATCTTT+GGG 0.427930 2_2:-10594949 Msa0237440:CDS
GTTTGCATTGAAGAAGATCT+AGG 0.432984 2_2:+10595952 None:intergenic
ATTAACATGTAAATCATAGT+TGG 0.445931 2_2:+10594813 None:intergenic
AGCTCAGGCAGAGCCTCTCC+AGG 0.451645 2_2:-10596944 Msa0237440:CDS
AATGCGAGGAGTCGTAGTTT+GGG 0.451995 2_2:+10595674 None:intergenic
GATGATAATTGTGATCTTCC+AGG 0.453183 2_2:+10595720 None:intergenic
GCAGGTTTAGATGTTCTTGA+TGG 0.455452 2_2:+10595609 None:intergenic
GTTATAGGAGAAATTGTTGA+AGG 0.457411 2_2:-10596756 Msa0237440:intron
AGACGAGCTCATCGCAGAGC+TGG 0.457689 2_2:-10596968 Msa0237440:CDS
AAGAAGTCCTGTCAATTTGA+AGG 0.461711 2_2:+10595562 None:intergenic
GATACAGATGCAGAAACAAT+AGG 0.464230 2_2:+10595633 None:intergenic
TAGAACTTGCAGTAACTCCT+TGG 0.465416 2_2:+10597110 None:intergenic
CGTTTGTCTTATGAGCAGTT+TGG 0.470820 2_2:-10595131 Msa0237440:CDS
GTACAGTGAGGAAGCTCAGT+AGG 0.476497 2_2:-10596715 Msa0237440:CDS
GGAGAGGAATGCAGAAGCAT+TGG 0.489445 2_2:+10597269 None:intergenic
ACTGGTTCAATGTCTAGCTC+TGG 0.504686 2_2:-10595525 Msa0237440:CDS
TGCACTTGCTGAACAAGATA+AGG 0.510112 2_2:-10596893 Msa0237440:intron
AGAACTTGCAGTAACTCCTT+GGG 0.510647 2_2:+10597111 None:intergenic
AGGGAAACCGCATGGCGCCT+TGG 0.511504 2_2:+10595582 None:intergenic
CGGCTTCAGAAAGAGCAGCC+TGG 0.513407 2_2:+10596926 None:intergenic
ATTAGTTATTATTACAGTCA+TGG 0.521790 2_2:+10594769 None:intergenic
CAAACCAATACTTCTGATGC+AGG 0.521825 2_2:-10595934 Msa0237440:CDS
CGTGTTGACACGTGTTGAAA+GGG 0.523596 2_2:+10597035 None:intergenic
ACTCCTCGCATTAGTCCTCC+TGG 0.526413 2_2:-10595663 Msa0237440:CDS
GTAGAGCAGAAACTTCTGAT+TGG 0.533919 2_2:+10597010 None:intergenic
TTCCCACAAACAAACAAAAG+AGG 0.537066 2_2:-10595078 Msa0237440:intron
AGAAGTCCTGTCAATTTGAA+GGG 0.540242 2_2:+10595563 None:intergenic
CAAACTGCTCATAAGACAAA+CGG 0.554300 2_2:+10595132 None:intergenic
CATCTAAACCTGCGTCTCCA+AGG 0.554770 2_2:-10595599 Msa0237440:CDS
GCCACATCGAGTTGCTCGAA+AGG 0.555075 2_2:+10597078 None:intergenic
TTATTGAAAGTTGGACATTG+AGG 0.558245 2_2:+10595483 None:intergenic
AATATCAGGTATTACAACCT+AGG 0.559023 2_2:+10594859 None:intergenic
ACCACTTCCACATCTCAGCT+TGG 0.564003 2_2:-10596090 Msa0237440:CDS
ACTTCCACATCTCAGCTTGG+AGG 0.564335 2_2:-10596087 Msa0237440:intron
TAATAACTAATAAGTTTGAA+AGG 0.565059 2_2:-10594757 Msa0237440:three_prime_UTR
TGTAACATAGCTGCAATGTT+GGG 0.565145 2_2:+10596126 None:intergenic
TCAATGTCTAGCTCTGGCAC+AGG 0.576331 2_2:-10595519 Msa0237440:CDS
ATGTAACATAGCTGCAATGT+TGG 0.581127 2_2:+10596125 None:intergenic
GCTCAGTAGGGATGTCTCCA+AGG 0.581456 2_2:-10596702 Msa0237440:intron
TCAGAAAGAGCAGCCTGGAG+AGG 0.582682 2_2:+10596931 None:intergenic
GCGTGTTGACACGTGTTGAA+AGG 0.583885 2_2:+10597034 None:intergenic
TACAGTGAGGAAGCTCAGTA+GGG 0.584079 2_2:-10596714 Msa0237440:CDS
TCCAAGCTGAGATGTGGAAG+TGG 0.584301 2_2:+10596089 None:intergenic
ATCGAGTTGCTCGAAAGGAT+CGG 0.586114 2_2:+10597083 None:intergenic
GCATGGCGCCTTGGAGACGC+AGG 0.586987 2_2:+10595591 None:intergenic
GAAACAATAGGAGGTGAACC+AGG 0.588601 2_2:+10595645 None:intergenic
TAACTAATAAGTTTGAAAGG+AGG 0.592525 2_2:-10594754 Msa0237440:three_prime_UTR
GCTAGACATTGAACCAGTAG+AGG 0.593995 2_2:+10595530 None:intergenic
TGCAGGAAATTCCTTTGCAG+AGG 0.596634 2_2:-10595917 Msa0237440:CDS
TCCTTTCGAGCAACTCGATG+TGG 0.598793 2_2:-10597079 Msa0237440:CDS
CAATTTGAAGGGAAACCGCA+TGG 0.598917 2_2:+10595574 None:intergenic
AGTACCTCCAAGCTGAGATG+TGG 0.600275 2_2:+10596083 None:intergenic
AGAGAAGAACATGTTGGTGG+CGG 0.608636 2_2:-10597160 Msa0237440:exon
AGCAAGTGCAAGCTTATCGG+CGG 0.608654 2_2:+10596906 None:intergenic
GCAGAGGATCGTCAATCAGA+TGG 0.614191 2_2:-10595901 Msa0237440:intron
ACTTATGCAATCACTTCAAG+AGG 0.616703 2_2:-10596562 Msa0237440:CDS
AAGAGAGAAGAACATGTTGG+TGG 0.623218 2_2:-10597163 Msa0237440:exon
TGATTGACGATCCTCTGCAA+AGG 0.623637 2_2:+10595906 None:intergenic
GACACGTGTTGAAAGGGCAA+TGG 0.633302 2_2:+10597041 None:intergenic
TTCAAACCTCGATATTCCCA+AGG 0.644306 2_2:-10597127 Msa0237440:CDS
TGCGTCTCCAAGGCGCCATG+CGG 0.654382 2_2:-10595589 Msa0237440:CDS
GTAACTCCTTGGGAATATCG+AGG 0.661342 2_2:+10597121 None:intergenic
ACGTGTTGAAAGGGCAATGG+AGG 0.665793 2_2:+10597044 None:intergenic
ACAGATGCAGAAACAATAGG+AGG 0.674096 2_2:+10595636 None:intergenic
ATTGGAACGTGATAAGACAA+TGG 0.689309 2_2:+10597287 None:intergenic
AGTTGCTCGAAAGGATCGGA+CGG 0.696761 2_2:+10597087 None:intergenic
ATGTTGGTGGCGGAATTGAG+TGG 0.699161 2_2:-10597150 Msa0237440:CDS
GAACCAGGAGGACTAATGCG+AGG 0.700895 2_2:+10595660 None:intergenic
CTTCACTTTCTAGTACAGTG+AGG 0.701338 2_2:-10596727 Msa0237440:CDS
TGCATTGAAGAAGATCTAGG+TGG 0.725090 2_2:+10595955 None:intergenic
ACAATAGGAGGTGAACCAGG+AGG 0.746649 2_2:+10595648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTTATTAATAAA+TGG - chr2_2:10595614-10595633 Msa0237440:CDS 0.0%
!! ATTATTATTTATTAATAAAT+GGG - chr2_2:10595615-10595634 Msa0237440:CDS 0.0%
!!! TCTTAAATTTTAATTTGTTT+TGG - chr2_2:10595254-10595273 Msa0237440:intron 10.0%
!!! AAATTATATGCAATTAATTT+TGG + chr2_2:10596051-10596070 None:intergenic 10.0%
!! TATGTATGTATATAAATTAA+GGG - chr2_2:10596637-10596656 Msa0237440:intron 10.0%
!!! ATTTGCATGAAATTTTTATT+TGG - chr2_2:10595220-10595239 Msa0237440:intron 15.0%
!!! AATTTTCATTTTAGTAAATG+TGG - chr2_2:10595403-10595422 Msa0237440:intron 15.0%
!! AAATATTAATAACAACTTAC+AGG + chr2_2:10595525-10595544 None:intergenic 15.0%
!! CTGAATTAGTTAAAAAAATA+AGG - chr2_2:10595699-10595718 Msa0237440:CDS 15.0%
!! ATTAATTAAACCAAAACTAA+TGG + chr2_2:10595798-10595817 None:intergenic 15.0%
!!! CAATTAAGCATTTTAAAAAA+TGG + chr2_2:10595835-10595854 None:intergenic 15.0%
!!! TTTTAAATATAGTTAACAAG+AGG - chr2_2:10595859-10595878 Msa0237440:intron 15.0%
!!! TTAATTATAAGTGTCTATTT+TGG + chr2_2:10596241-10596260 None:intergenic 15.0%
!! AACAAATAATTATTGAAAGT+TGG + chr2_2:10596579-10596598 None:intergenic 15.0%
!! TATATGATCACTTTAATTAA+TGG - chr2_2:10596612-10596631 Msa0237440:intron 15.0%
!! GTATGTATGTATATAAATTA+AGG - chr2_2:10596636-10596655 Msa0237440:intron 15.0%
!! TAATAACTAATAAGTTTGAA+AGG - chr2_2:10597293-10597312 Msa0237440:five_prime_UTR 15.0%
!!! TTGTGATTTTATTCATAGTT+TGG + chr2_2:10594805-10594824 None:intergenic 20.0%
!! GTGGTTAATTAATGTTATAA+TGG - chr2_2:10595422-10595441 Msa0237440:intron 20.0%
!! TTAATATGAATATATGCAGT+TGG - chr2_2:10595449-10595468 Msa0237440:intron 20.0%
!!! TTAAGCATTTTAAAAAATGG+AGG + chr2_2:10595832-10595851 None:intergenic 20.0%
!! TATAAGTTGTTTATCCAAAT+AGG + chr2_2:10596770-10596789 None:intergenic 20.0%
!! ACAAATGTTACCATAAAAAA+GGG + chr2_2:10597021-10597040 None:intergenic 20.0%
!! TACAAATGTTACCATAAAAA+AGG + chr2_2:10597022-10597041 None:intergenic 20.0%
!! ATTAACATGTAAATCATAGT+TGG + chr2_2:10597240-10597259 None:intergenic 20.0%
!! ATTAGTTATTATTACAGTCA+TGG + chr2_2:10597284-10597303 None:intergenic 20.0%
!! ATTTTATTCATAGTTTGGAG+AGG + chr2_2:10594800-10594819 None:intergenic 25.0%
! TTAATTTAGAAAACGGTTCA+CGG + chr2_2:10595190-10595209 None:intergenic 25.0%
! AAATTTCATGCAAATTGAAC+CGG + chr2_2:10595215-10595234 None:intergenic 25.0%
! GAGATTGTGTAAATTGTTAT+AGG - chr2_2:10595279-10595298 Msa0237440:intron 25.0%
!!! TTAGACTTACTTTTTTCAGT+AGG - chr2_2:10595643-10595662 Msa0237440:CDS 25.0%
!!! TAGACTTACTTTTTTCAGTA+GGG - chr2_2:10595644-10595663 Msa0237440:CDS 25.0%
!! GTACAAAGTTCAAATTTTCT+TGG - chr2_2:10595755-10595774 Msa0237440:intron 25.0%
! AAATATCATCTACTTTATGC+AGG - chr2_2:10596180-10596199 Msa0237440:intron 25.0%
!! CACATGTTTTTCTTTTTTCT+TGG - chr2_2:10596680-10596699 Msa0237440:intron 25.0%
! AAACATGTAGAAATAAGTGA+AGG + chr2_2:10596884-10596903 None:intergenic 25.0%
!!! TCTACATGTTTGTTATCATT+AGG - chr2_2:10596893-10596912 Msa0237440:intron 25.0%
!!! TGCATTTTTAGCAAATGTTA+AGG - chr2_2:10596942-10596961 Msa0237440:CDS 25.0%
! CAAATGTTACCATAAAAAAG+GGG + chr2_2:10597020-10597039 None:intergenic 25.0%
! GATCTGTATACTATATTTGA+AGG - chr2_2:10597136-10597155 Msa0237440:CDS 25.0%
!! TGTTCATTAAATTGATTCCT+AGG - chr2_2:10597174-10597193 Msa0237440:five_prime_UTR 25.0%
! TAACTAATAAGTTTGAAAGG+AGG - chr2_2:10597296-10597315 Msa0237440:five_prime_UTR 25.0%
AAAAAGAGAGAAGAACATGT+TGG - chr2_2:10594884-10594903 Msa0237440:exon 30.0%
TAATTTAGAAAACGGTTCAC+GGG + chr2_2:10595189-10595208 None:intergenic 30.0%
! ACCGTTTTCTAAATTAAACC+CGG - chr2_2:10595193-10595212 Msa0237440:intron 30.0%
! ACCGGGTTTAATTTAGAAAA+CGG + chr2_2:10595197-10595216 None:intergenic 30.0%
AATTTCATGCAAATTGAACC+GGG + chr2_2:10595214-10595233 None:intergenic 30.0%
GTTATAGGAGAAATTGTTGA+AGG - chr2_2:10595294-10595313 Msa0237440:intron 30.0%
AAACCAAATTATTTGCACCT+TGG + chr2_2:10595368-10595387 None:intergenic 30.0%
ATATGAATATATGCAGTTGG+AGG - chr2_2:10595452-10595471 Msa0237440:intron 30.0%
!! CGTAAAATGACCATTAGTTT+TGG - chr2_2:10595785-10595804 Msa0237440:intron 30.0%
! TTGACATGTAACATGGTTTT+TGG - chr2_2:10595884-10595903 Msa0237440:intron 30.0%
TGTTCCAAATGAAAAGAACA+TGG - chr2_2:10596024-10596043 Msa0237440:intron 30.0%
! TTCTTTTCGAAAAATGTAGC+TGG - chr2_2:10596306-10596325 Msa0237440:intron 30.0%
TTATTGAAAGTTGGACATTG+AGG + chr2_2:10596570-10596589 None:intergenic 30.0%
AAGTGAAGGATTCAAAAGTT+AGG + chr2_2:10596870-10596889 None:intergenic 30.0%
CAATTTCACAAACACAACAA+AGG + chr2_2:10597068-10597087 None:intergenic 30.0%
!!! GTATACAGATCTTTGTTTTC+TGG + chr2_2:10597127-10597146 None:intergenic 30.0%
AATATCAGGTATTACAACCT+AGG + chr2_2:10597194-10597213 None:intergenic 30.0%
ATTGGAACGTGATAAGACAA+TGG + chr2_2:10594766-10594785 None:intergenic 35.0%
TCTCCAAGGTGCAAATAATT+TGG - chr2_2:10595362-10595381 Msa0237440:intron 35.0%
ACTTATGCAATCACTTCAAG+AGG - chr2_2:10595488-10595507 Msa0237440:CDS 35.0%
AGAGGATTTGACATGTAACA+TGG - chr2_2:10595877-10595896 Msa0237440:intron 35.0%
!!! TGTAACATGGTTTTTGGTGT+AGG - chr2_2:10595890-10595909 Msa0237440:intron 35.0%
!!! GTAACATGGTTTTTGGTGTA+GGG - chr2_2:10595891-10595910 Msa0237440:intron 35.0%
TGTAACATAGCTGCAATGTT+GGG + chr2_2:10595927-10595946 None:intergenic 35.0%
ATGTAACATAGCTGCAATGT+TGG + chr2_2:10595928-10595947 None:intergenic 35.0%
! TGGACCATGTTCTTTTCATT+TGG + chr2_2:10596031-10596050 None:intergenic 35.0%
GTTTGCATTGAAGAAGATCT+AGG + chr2_2:10596101-10596120 None:intergenic 35.0%
! ATTTCCTGCATCAGAAGTAT+TGG + chr2_2:10596123-10596142 None:intergenic 35.0%
GATGATAATTGTGATCTTCC+AGG + chr2_2:10596333-10596352 None:intergenic 35.0%
GATACAGATGCAGAAACAAT+AGG + chr2_2:10596420-10596439 None:intergenic 35.0%
AGAAGTCCTGTCAATTTGAA+GGG + chr2_2:10596490-10596509 None:intergenic 35.0%
AAGAAGTCCTGTCAATTTGA+AGG + chr2_2:10596491-10596510 None:intergenic 35.0%
! TCTTCAATGTTTTCCTCTAC+TGG - chr2_2:10596507-10596526 Msa0237440:intron 35.0%
GTTTATCCAAATAGGATCCA+AGG + chr2_2:10596762-10596781 None:intergenic 35.0%
CAAACTGCTCATAAGACAAA+CGG + chr2_2:10596921-10596940 None:intergenic 35.0%
TTCCCACAAACAAACAAAAG+AGG - chr2_2:10596972-10596991 Msa0237440:CDS 35.0%
!! CACCTCTTTTGTTTGTTTGT+GGG + chr2_2:10596977-10596996 None:intergenic 35.0%
!! TCACCTCTTTTGTTTGTTTG+TGG + chr2_2:10596978-10596997 None:intergenic 35.0%
ATGTTACCATAAAAAAGGGG+AGG + chr2_2:10597017-10597036 None:intergenic 35.0%
TGTTGTGTTTGTGAAATTGC+AGG - chr2_2:10597069-10597088 Msa0237440:CDS 35.0%
AAGAAAGCTGATGAGATCTT+TGG - chr2_2:10597100-10597119 Msa0237440:CDS 35.0%
AGAAAGCTGATGAGATCTTT+GGG - chr2_2:10597101-10597120 Msa0237440:CDS 35.0%
GAAAAAAGAAGCTGAAGTAG+AGG + chr2_2:10597218-10597237 None:intergenic 35.0%
AAGAGAGAAGAACATGTTGG+TGG - chr2_2:10594887-10594906 Msa0237440:exon 40.0%
TTCAAACCTCGATATTCCCA+AGG - chr2_2:10594923-10594942 Msa0237440:CDS 40.0%
AGAACTTGCAGTAACTCCTT+GGG + chr2_2:10594942-10594961 None:intergenic 40.0%
TAGAACTTGCAGTAACTCCT+TGG + chr2_2:10594943-10594962 None:intergenic 40.0%
GTAGAGCAGAAACTTCTGAT+TGG + chr2_2:10595043-10595062 None:intergenic 40.0%
TTCAGCAAGTGCAAGCTTAT+CGG + chr2_2:10595150-10595169 None:intergenic 40.0%
! TGCACTTGCTGAACAAGATA+AGG - chr2_2:10595157-10595176 Msa0237440:intron 40.0%
! CTTCACTTTCTAGTACAGTG+AGG - chr2_2:10595323-10595342 Msa0237440:intron 40.0%
TGCAGCTATGTTACATAGTC+AGG - chr2_2:10595932-10595951 Msa0237440:CDS 40.0%
TGCATTGAAGAAGATCTAGG+TGG + chr2_2:10596098-10596117 None:intergenic 40.0%
CAAACCAATACTTCTGATGC+AGG - chr2_2:10596116-10596135 Msa0237440:CDS 40.0%
ACAGATGCAGAAACAATAGG+AGG + chr2_2:10596417-10596436 None:intergenic 40.0%
GCAGGTTTAGATGTTCTTGA+TGG + chr2_2:10596444-10596463 None:intergenic 40.0%
CGTTTGTCTTATGAGCAGTT+TGG - chr2_2:10596919-10596938 Msa0237440:CDS 40.0%
!!! GTATCTCCTCCCCTTTTTTA+TGG - chr2_2:10597008-10597027 Msa0237440:CDS 40.0%
GCTGAAGTAGAGGAAATATC+AGG + chr2_2:10597208-10597227 None:intergenic 40.0%
! AGAGAAGAACATGTTGGTGG+CGG - chr2_2:10594890-10594909 Msa0237440:CDS 45.0%
GTAACTCCTTGGGAATATCG+AGG + chr2_2:10594932-10594951 None:intergenic 45.0%
! ATCGAGTTGCTCGAAAGGAT+CGG + chr2_2:10594970-10594989 None:intergenic 45.0%
! CGTGTTGACACGTGTTGAAA+GGG + chr2_2:10595018-10595037 None:intergenic 45.0%
TACAGTGAGGAAGCTCAGTA+GGG - chr2_2:10595336-10595355 Msa0237440:intron 45.0%
! GCAGTTGGAGGTTTTCAGAA+AGG - chr2_2:10595464-10595483 Msa0237440:intron 45.0%
TGCAGGAAATTCCTTTGCAG+AGG - chr2_2:10596133-10596152 Msa0237440:CDS 45.0%
TGATTGACGATCCTCTGCAA+AGG + chr2_2:10596147-10596166 None:intergenic 45.0%
TCGAAAAATGTAGCTGGACC+TGG - chr2_2:10596312-10596331 Msa0237440:intron 45.0%
AATGCGAGGAGTCGTAGTTT+GGG + chr2_2:10596379-10596398 None:intergenic 45.0%
TAATGCGAGGAGTCGTAGTT+TGG + chr2_2:10596380-10596399 None:intergenic 45.0%
GAAACAATAGGAGGTGAACC+AGG + chr2_2:10596408-10596427 None:intergenic 45.0%
CAATTTGAAGGGAAACCGCA+TGG + chr2_2:10596479-10596498 None:intergenic 45.0%
CGGTTTCCCTTCAAATTGAC+AGG - chr2_2:10596481-10596500 Msa0237440:intron 45.0%
GCTAGACATTGAACCAGTAG+AGG + chr2_2:10596523-10596542 None:intergenic 45.0%
! ACTGGTTCAATGTCTAGCTC+TGG - chr2_2:10596525-10596544 Msa0237440:intron 45.0%
TTCTTTCGCCAAGTCAGGTA+AGG - chr2_2:10596734-10596753 Msa0237440:CDS 45.0%
TCTTTCGCCAAGTCAGGTAA+GGG - chr2_2:10596735-10596754 Msa0237440:CDS 45.0%
AAGGGTCCTTGGATCCTATT+TGG - chr2_2:10596753-10596772 Msa0237440:intron 45.0%
AAAGGGGAGGAGATACATGA+GGG + chr2_2:10597004-10597023 None:intergenic 45.0%
AAAAGGGGAGGAGATACATG+AGG + chr2_2:10597005-10597024 None:intergenic 45.0%
!!! AATTAATATTTTTTTAATAG+AGG - chr2_2:10595578-10595597 Msa0237440:CDS 5.0%
!! AATATAATAATTACAATATT+TGG - chr2_2:10595722-10595741 Msa0237440:CDS 5.0%
! GGAGAGGAATGCAGAAGCAT+TGG + chr2_2:10594784-10594803 None:intergenic 50.0%
!! ATGTTGGTGGCGGAATTGAG+TGG - chr2_2:10594900-10594919 Msa0237440:CDS 50.0%
AGTTGCTCGAAAGGATCGGA+CGG + chr2_2:10594966-10594985 None:intergenic 50.0%
TCCTTTCGAGCAACTCGATG+TGG - chr2_2:10594971-10594990 Msa0237440:intron 50.0%
ACGTGTTGAAAGGGCAATGG+AGG + chr2_2:10595009-10595028 None:intergenic 50.0%
GACACGTGTTGAAAGGGCAA+TGG + chr2_2:10595012-10595031 None:intergenic 50.0%
! GCGTGTTGACACGTGTTGAA+AGG + chr2_2:10595019-10595038 None:intergenic 50.0%
TGCGATGAGCTCGTCTTTCT+TGG + chr2_2:10595078-10595097 None:intergenic 50.0%
AGCAAGTGCAAGCTTATCGG+CGG + chr2_2:10595147-10595166 None:intergenic 50.0%
GTACAGTGAGGAAGCTCAGT+AGG - chr2_2:10595335-10595354 Msa0237440:intron 50.0%
!!! TGGTTTTTGGTGTAGGGAGC+AGG - chr2_2:10595897-10595916 Msa0237440:intron 50.0%
ACCACTTCCACATCTCAGCT+TGG - chr2_2:10595960-10595979 Msa0237440:CDS 50.0%
TCCAAGCTGAGATGTGGAAG+TGG + chr2_2:10595964-10595983 None:intergenic 50.0%
ACTTCCACATCTCAGCTTGG+AGG - chr2_2:10595963-10595982 Msa0237440:CDS 50.0%
AGTACCTCCAAGCTGAGATG+TGG + chr2_2:10595970-10595989 None:intergenic 50.0%
GCAGAGGATCGTCAATCAGA+TGG - chr2_2:10596149-10596168 Msa0237440:intron 50.0%
ACAATAGGAGGTGAACCAGG+AGG + chr2_2:10596405-10596424 None:intergenic 50.0%
CATCTAAACCTGCGTCTCCA+AGG - chr2_2:10596451-10596470 Msa0237440:intron 50.0%
!! TCAATGTCTAGCTCTGGCAC+AGG - chr2_2:10596531-10596550 Msa0237440:intron 50.0%
TTCTTGGCTCAGCACGAACT+CGG - chr2_2:10596696-10596715 Msa0237440:intron 50.0%
AGGAGTTCTTTCGCCAAGTC+AGG - chr2_2:10596729-10596748 Msa0237440:CDS 50.0%
! GCCACATCGAGTTGCTCGAA+AGG + chr2_2:10594975-10594994 None:intergenic 55.0%
TCAGAAAGAGCAGCCTGGAG+AGG + chr2_2:10595122-10595141 None:intergenic 55.0%
GCTCAGTAGGGATGTCTCCA+AGG - chr2_2:10595348-10595367 Msa0237440:intron 55.0%
ACTCCTCGCATTAGTCCTCC+TGG - chr2_2:10596387-10596406 Msa0237440:intron 55.0%
GAACCAGGAGGACTAATGCG+AGG + chr2_2:10596393-10596412 None:intergenic 55.0%
TCTTGGCTCAGCACGAACTC+GGG - chr2_2:10596697-10596716 Msa0237440:intron 55.0%
ACGAACTCGGGTGGATGGAA+AGG - chr2_2:10596709-10596728 Msa0237440:CDS 55.0%
CCAAGGACCCTTACCTGACT+TGG + chr2_2:10596745-10596764 None:intergenic 55.0%
CCAAGTCAGGTAAGGGTCCT+TGG - chr2_2:10596742-10596761 Msa0237440:CDS 55.0%
AGACGAGCTCATCGCAGAGC+TGG - chr2_2:10595082-10595101 Msa0237440:CDS 60.0%
CATCGCAGAGCTGGAAGCTC+AGG - chr2_2:10595091-10595110 Msa0237440:CDS 60.0%
CGGCTTCAGAAAGAGCAGCC+TGG + chr2_2:10595127-10595146 None:intergenic 60.0%
TCAGCACGAACTCGGGTGGA+TGG - chr2_2:10596704-10596723 Msa0237440:CDS 60.0%
AGCTCAGGCAGAGCCTCTCC+AGG - chr2_2:10595106-10595125 Msa0237440:CDS 65.0%
! TGCGTCTCCAAGGCGCCATG+CGG - chr2_2:10596461-10596480 Msa0237440:intron 65.0%
AGGGAAACCGCATGGCGCCT+TGG + chr2_2:10596471-10596490 None:intergenic 65.0%
TGGCTCAGCACGAACTCGGG+TGG - chr2_2:10596700-10596719 Msa0237440:intron 65.0%
GCATGGCGCCTTGGAGACGC+AGG + chr2_2:10596462-10596481 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10594734 10597338 10594734 ID=Msa0237440;Name=Msa0237440
chr2_2 mRNA 10594734 10597338 10594734 ID=Msa0237440-mRNA-1;Parent=Msa0237440;Name=Msa0237440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|0.85|0.87|1|1|1|8|155|337
chr2_2 exon 10594734 10594981 10594734 ID=Msa0237440-mRNA-1:exon:4682;Parent=Msa0237440-mRNA-1
chr2_2 exon 10595079 10595157 10595079 ID=Msa0237440-mRNA-1:exon:4681;Parent=Msa0237440-mRNA-1
chr2_2 exon 10595477 10595747 10595477 ID=Msa0237440-mRNA-1:exon:4680;Parent=Msa0237440-mRNA-1
chr2_2 exon 10595902 10595994 10595902 ID=Msa0237440-mRNA-1:exon:4679;Parent=Msa0237440-mRNA-1
chr2_2 exon 10596088 10596160 10596088 ID=Msa0237440-mRNA-1:exon:4678;Parent=Msa0237440-mRNA-1
chr2_2 exon 10596548 10596604 10596548 ID=Msa0237440-mRNA-1:exon:4677;Parent=Msa0237440-mRNA-1
chr2_2 exon 10596703 10596771 10596703 ID=Msa0237440-mRNA-1:exon:4676;Parent=Msa0237440-mRNA-1
chr2_2 exon 10596894 10597338 10596894 ID=Msa0237440-mRNA-1:exon:4675;Parent=Msa0237440-mRNA-1
chr2_2 five_prime_UTR 10597173 10597338 10597173 ID=Msa0237440-mRNA-1:five_prime_utr;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10596894 10597172 10596894 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10596703 10596771 10596703 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10596548 10596604 10596548 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10596088 10596160 10596088 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10595902 10595994 10595902 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10595477 10595747 10595477 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10595079 10595157 10595079 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 CDS 10594889 10594981 10594889 ID=Msa0237440-mRNA-1:cds;Parent=Msa0237440-mRNA-1
chr2_2 three_prime_UTR 10594734 10594888 10594734 ID=Msa0237440-mRNA-1:three_prime_utr;Parent=Msa0237440-mRNA-1
Gene Sequence

>Msa0237440

ATGTTGGTGGCGGAATTGAGTGGTTCAAACCTCGATATTCCCAAGGAGTTACTGCAAGTTCTACCGTCCGATCCTTTCGAGCAACTCGATGTGGCTCGCAAAATCACCTCCATTGCCCTTTCAACACGTGTCAACACGCTCCAATCAGAAGTTTCTGCTCTACGTGACGAGCTTGCCAAGAAAGACGAGCTCATCGCAGAGCTGGAAGCTCAGGCAGAGCCTCTCCAGGCTGCTCTTTCTGAAGCCGCCGATAAGCTTGCACTTGCTGAACAAGATAAGGAGAAATTGTTGAAGGAGAATGCTTCACTTTCTAGTACAGTGAGGAAGCTCAGTAGGGATGTCTCCAAGTTGGAGGTTTTCAGAAAGGCACTTATGCAATCACTTCAAGAGGATGAAGAAAAACCTGGAGCAGGATCACCCAACATTGCAGCTATGTTACATAGTCAGGCAAGTACCACTTCCACATCTCAGCTTGGAGATGAAGATGATTCATTGCCACCTAGATCTTCTTCAATGCAAACCAATACTTCTGATGCAGGAAATTCCTTTGCAGAGGATCGTCAATCAGATGCTGGACCTGGAAGATCACAATTATCATCATCACATAATATTTTGTTAGCATCCCAAACTACGACTCCTCGCATTAGTCCTCCTGGTTCACCTCCTATTGTTTCTGCATCTGTATCACCATCAAGAACATCTAAACCTGCGTCTCCAAGGCGCCATGCGGTTTCCCTTCAAATTGACAGGACTTCTTCAATGTTTTCCTCTACTGGTTCAATGTCTAGCTCTGGCACAGGTTTCTGCATGCTACCTCAATGTCCAACTTTCAATAATTATTTGAGCCGTTTGTCTTATGAGCAGTTTGGTGCATTTTTAGCAAATGTTAAGGAACTGAATTCCCACAAACAAACAAAAGAGGAGACACTAAAGAAAGCTGATGAGATCTTTGGGCCAGAAAACAAAGATCTGTATACTATATTTGAAGGATTGATTAGTCGCAATGTTCATTAA

Protein sequence

>Msa0237440

MLVAELSGSNLDIPKELLQVLPSDPFEQLDVARKITSIALSTRVNTLQSEVSALRDELAKKDELIAELEAQAEPLQAALSEAADKLALAEQDKEKLLKENASLSSTVRKLSRDVSKLEVFRKALMQSLQEDEEKPGAGSPNIAAMLHSQASTTSTSQLGDEDDSLPPRSSSMQTNTSDAGNSFAEDRQSDAGPGRSQLSSSHNILLASQTTTPRISPPGSPPIVSASVSPSRTSKPASPRRHAVSLQIDRTSSMFSSTGSMSSSGTGFCMLPQCPTFNNYLSRLSYEQFGAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLISRNVH*