AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07524


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07524.t1 MTR_1g078110 95.251 379 18 0 1 379 382 760 0.0 742
MS.gene07524.t1 MTR_8g024380 79.420 379 74 2 1 375 383 761 0.0 627
MS.gene07524.t1 MTR_2g049200 70.942 382 105 5 1 379 384 762 0.0 538
MS.gene07524.t1 MTR_8g024390 69.761 377 108 4 3 374 384 759 0.0 531
MS.gene07524.t1 MTR_8g024420 70.976 379 104 4 1 374 346 723 0.0 527
MS.gene07524.t1 MTR_8g024370 67.708 384 110 6 1 374 379 758 2.22e-170 494
MS.gene07524.t1 MTR_7g118080 65.517 377 122 7 4 375 385 758 6.26e-164 478
MS.gene07524.t1 MTR_7g079310 47.757 379 184 9 4 372 389 763 2.52e-107 332
MS.gene07524.t1 MTR_7g079300 47.074 376 189 8 4 372 393 765 4.51e-104 324
MS.gene07524.t1 MTR_1g079120 46.419 377 191 8 4 372 387 760 3.65e-97 306
MS.gene07524.t1 MTR_4g073540 44.216 389 194 12 3 376 391 771 4.38e-88 282
MS.gene07524.t1 MTR_8g027660 66.497 197 41 2 183 378 80 252 1.84e-84 257
MS.gene07524.t1 MTR_8g022870 41.799 378 201 8 11 373 403 776 1.31e-83 270
MS.gene07524.t1 MTR_8g021130 40.214 373 201 9 12 370 408 772 2.18e-80 262
MS.gene07524.t1 MTR_4g102400 42.507 367 188 10 14 372 401 752 3.29e-79 258
MS.gene07524.t1 MTR_1g102350 36.911 382 207 9 11 375 415 779 4.79e-75 248
MS.gene07524.t1 MTR_7g075900 38.710 372 212 8 11 373 408 772 6.19e-75 247
MS.gene07524.t1 MTR_7g098630 38.889 378 203 10 12 372 394 760 3.43e-72 241
MS.gene07524.t1 MTR_4g125180 37.766 376 205 12 13 373 391 752 3.88e-72 239
MS.gene07524.t1 MTR_7g081580 39.474 380 196 11 12 372 419 783 5.13e-72 240
MS.gene07524.t1 MTR_5g055920 40.849 377 207 11 3 372 299 666 9.57e-72 236
MS.gene07524.t1 MTR_7g081750 44.828 290 148 6 87 372 516 797 1.32e-71 239
MS.gene07524.t1 MTR_2g042130 35.450 378 227 7 9 377 408 777 1.50e-71 238
MS.gene07524.t1 MTR_3g102810 40.909 374 198 10 12 370 387 752 2.88e-71 237
MS.gene07524.t1 MTR_5g025010 38.965 367 199 8 12 372 370 717 3.30e-71 236
MS.gene07524.t1 MTR_5g025010 38.965 367 199 8 12 372 402 749 5.23e-71 236
MS.gene07524.t1 MTR_3g061110 40.710 366 203 8 12 372 396 752 7.80e-71 236
MS.gene07524.t1 MTR_4g103480 40.053 377 210 11 3 372 419 786 5.63e-70 234
MS.gene07524.t1 MTR_5g016120 41.019 373 197 11 11 371 398 759 1.42e-69 233
MS.gene07524.t1 MTR_7g081380 45.017 291 147 8 87 372 524 806 5.54e-69 232
MS.gene07524.t1 MTR_4g103450 39.788 377 211 11 3 372 376 743 6.29e-69 231
MS.gene07524.t1 MTR_7g081420 38.583 381 199 11 12 372 419 784 1.40e-68 230
MS.gene07524.t1 MTR_3g082200 37.500 384 213 12 3 375 267 634 3.81e-68 226
MS.gene07524.t1 MTR_3g082200 37.500 384 213 12 3 375 282 649 5.59e-68 226
MS.gene07524.t1 MTR_7g481600 37.995 379 203 10 12 372 419 783 5.70e-68 229
MS.gene07524.t1 MTR_4g095360 37.330 367 219 7 13 373 394 755 6.66e-68 228
MS.gene07524.t1 MTR_0047s0120 38.859 368 210 7 11 370 394 754 9.38e-68 228
MS.gene07524.t1 MTR_7g081500 38.522 379 201 11 12 372 418 782 1.25e-67 228
MS.gene07524.t1 MTR_5g011190 39.946 373 191 10 13 372 401 753 2.51e-67 226
MS.gene07524.t1 MTR_3g082200 37.500 384 213 12 3 375 405 772 3.78e-67 226
MS.gene07524.t1 MTR_8g033150 40.052 382 195 14 3 374 369 726 6.29e-67 225
MS.gene07524.t1 MTR_5g085690 38.560 389 188 13 12 372 423 788 7.33e-67 226
MS.gene07524.t1 MTR_8g033150 40.052 382 195 14 3 374 396 753 9.39e-67 225
MS.gene07524.t1 MTR_5g011310 41.298 339 175 8 43 372 430 753 1.25e-66 224
MS.gene07524.t1 MTR_4g103430 39.295 369 205 10 12 372 411 768 3.52e-66 224
MS.gene07524.t1 MTR_1g018510 37.701 374 214 10 12 370 354 723 4.99e-66 223
MS.gene07524.t1 MTR_8g072440 37.705 366 203 8 12 372 365 710 5.59e-66 222
MS.gene07524.t1 MTR_5g011340 42.059 340 168 9 44 372 429 750 7.64e-66 223
MS.gene07524.t1 MTR_5g011370 39.410 373 193 10 13 372 421 773 8.44e-66 223
MS.gene07524.t1 MTR_4g134320 38.360 378 217 9 3 376 404 769 9.96e-66 223
MS.gene07524.t1 MTR_5g011320 38.211 369 202 9 13 372 394 745 1.20e-65 222
MS.gene07524.t1 MTR_8g072440 37.705 366 203 8 12 372 407 752 1.29e-65 222
MS.gene07524.t1 MTR_5g044060 74.265 136 34 1 87 221 1 136 5.06e-65 205
MS.gene07524.t1 MTR_7g098070 38.360 378 217 8 3 376 400 765 1.21e-64 219
MS.gene07524.t1 MTR_5g011280 38.667 375 194 11 13 372 402 755 2.00e-64 219
MS.gene07524.t1 MTR_8g042670 37.634 372 208 11 11 372 276 633 6.07e-64 215
MS.gene07524.t1 MTR_8g079900 38.830 376 195 11 9 374 295 645 1.28e-63 214
MS.gene07524.t1 MTR_8g042710 36.675 379 209 12 9 372 401 763 1.87e-63 216
MS.gene07524.t1 MTR_8g042670 37.903 372 207 11 11 372 400 757 3.47e-63 215
MS.gene07524.t1 MTR_8g079900 38.830 376 195 11 9 374 393 743 5.36e-63 214
MS.gene07524.t1 MTR_5g096750 41.053 380 189 15 9 378 413 767 8.96e-63 214
MS.gene07524.t1 MTR_5g011270 38.814 371 198 9 13 372 399 751 1.23e-62 214
MS.gene07524.t1 MTR_4g103490 37.705 366 215 9 12 372 426 783 1.51e-62 214
MS.gene07524.t1 MTR_5g011260 39.018 387 196 14 3 372 388 751 2.13e-62 213
MS.gene07524.t1 MTR_4g103495 39.189 370 206 10 11 372 265 623 4.14e-62 210
MS.gene07524.t1 MTR_8g083220 41.667 300 154 7 85 379 498 781 1.18e-61 211
MS.gene07524.t1 MTR_4g053630 36.757 370 217 8 13 377 300 657 4.46e-61 208
MS.gene07524.t1 MTR_4g103400 38.667 375 208 12 11 372 411 776 6.69e-61 209
MS.gene07524.t1 MTR_4g053630 37.260 365 212 8 13 372 377 729 1.51e-60 208
MS.gene07524.t1 MTR_8g027260 40.753 292 155 5 89 375 376 654 3.11e-59 203
MS.gene07524.t1 MTR_7g034380 36.605 377 209 12 3 372 338 691 5.80e-59 203
MS.gene07524.t1 MTR_7g075890 37.903 372 200 12 9 372 549 897 3.12e-58 203
MS.gene07524.t1 MTR_8g005710 35.602 382 214 10 2 375 344 701 3.18e-58 201
MS.gene07524.t1 MTR_2g018135 38.259 379 211 10 5 373 418 783 3.38e-58 202
MS.gene07524.t1 MTR_1g006990 36.434 387 200 14 6 377 384 739 8.60e-57 197
MS.gene07524.t1 MTR_6g055570 36.292 383 190 15 13 375 384 732 8.87e-57 197
MS.gene07524.t1 MTR_3g114420 36.592 358 200 12 33 375 422 767 1.18e-56 197
MS.gene07524.t1 MTR_4g053635 36.216 370 216 9 13 377 323 677 1.38e-56 196
MS.gene07524.t1 MTR_2g018125 37.995 379 212 10 5 373 419 784 1.41e-56 197
MS.gene07524.t1 MTR_1g007030 36.176 387 201 15 6 377 382 737 7.35e-56 195
MS.gene07524.t1 MTR_3g104930 37.203 379 208 13 11 373 398 762 1.68e-55 194
MS.gene07524.t1 MTR_3g010080 37.209 387 201 15 4 377 379 736 1.35e-54 192
MS.gene07524.t1 MTR_3g464790 36.148 379 198 13 4 373 389 732 2.68e-54 191
MS.gene07524.t1 MTR_7g104200 35.422 367 212 9 12 372 394 741 1.84e-53 189
MS.gene07524.t1 MTR_1g048110 36.788 386 196 15 6 375 380 733 2.42e-53 188
MS.gene07524.t1 MTR_8g006680 36.962 395 183 18 4 377 378 727 9.04e-53 186
MS.gene07524.t1 MTR_8g005300 36.962 395 183 18 4 377 378 727 9.04e-53 186
MS.gene07524.t1 MTR_8g005640 36.962 395 183 18 4 377 378 727 9.04e-53 186
MS.gene07524.t1 MTR_6g075370 38.290 269 147 5 99 363 424 677 8.28e-51 181
MS.gene07524.t1 MTR_4g103495 39.677 310 170 8 11 313 414 713 3.09e-50 180
MS.gene07524.t1 MTR_6g055410 41.155 277 138 10 108 375 454 714 1.23e-49 177
MS.gene07524.t1 MTR_2g042650 34.286 385 197 15 4 377 308 647 1.86e-44 162
MS.gene07524.t1 MTR_7g079295 50.296 169 72 4 206 372 351 509 8.01e-41 150
MS.gene07524.t1 MTR_2g044630 38.783 263 128 10 122 372 464 705 1.37e-40 152
MS.gene07524.t1 MTR_4g127480 36.177 293 152 11 97 371 537 812 2.66e-38 146
MS.gene07524.t1 MTR_2g070260 40.385 208 103 8 159 360 1 193 2.23e-34 126
MS.gene07524.t1 MTR_2g042640 35.075 268 134 7 75 334 376 611 3.23e-34 134
MS.gene07524.t1 MTR_4g126230 34.934 229 128 5 76 300 37 248 6.46e-34 126
MS.gene07524.t1 MTR_3g452290 28.684 380 175 14 2 375 282 571 9.58e-34 132
MS.gene07524.t1 MTR_3g451220 28.684 380 175 14 2 375 282 571 9.58e-34 132
MS.gene07524.t1 MTR_4g132620 32.975 279 166 7 99 367 542 809 3.27e-32 128
MS.gene07524.t1 MTR_3g114140 36.719 256 143 9 84 330 176 421 7.54e-32 125
MS.gene07524.t1 MTR_8g089230 33.766 308 170 13 83 372 554 845 7.63e-31 124
MS.gene07524.t1 MTR_2g037850 38.174 241 120 8 97 320 537 765 8.98e-31 124
MS.gene07524.t1 MTR_4g053665 34.866 261 123 7 118 377 1 215 2.88e-30 115
MS.gene07524.t1 MTR_7g081660 37.778 180 103 3 195 372 380 552 5.81e-29 118
MS.gene07524.t1 MTR_2g046740 34.122 296 154 13 99 372 562 838 2.30e-27 114
MS.gene07524.t1 MTR_3g114410 38.798 183 109 3 9 190 400 580 1.88e-26 111
MS.gene07524.t1 MTR_8g042710 37.306 193 101 7 9 190 401 584 2.21e-26 111
MS.gene07524.t1 MTR_4g071560 36.022 186 107 6 14 191 339 520 1.21e-22 99.8
MS.gene07524.t1 MTR_5g081130 34.615 182 94 7 202 372 5 172 2.51e-21 91.3
MS.gene07524.t1 MTR_5g011300 51.648 91 43 1 159 249 1 90 6.29e-18 78.6
MS.gene07524.t1 MTR_8g027670 57.500 80 34 0 246 325 33 112 9.49e-16 73.2
MS.gene07524.t1 MTR_3g005755 43.038 79 44 1 141 218 228 306 4.40e-14 72.8
MS.gene07524.t1 MTR_3g114400 32.402 179 90 9 203 373 8 163 5.60e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07524.t1 AT5G67090 42.553 376 184 9 9 375 380 732 2.08e-86 277
MS.gene07524.t1 AT4G34980 41.927 384 209 9 3 375 381 761 2.35e-83 269
MS.gene07524.t1 AT3G14240 40.000 380 203 7 13 373 397 770 1.66e-78 257
MS.gene07524.t1 AT5G51750 37.831 378 222 7 5 375 406 777 6.11e-78 255
MS.gene07524.t1 AT5G67360 40.162 371 205 7 11 373 394 755 9.74e-77 252
MS.gene07524.t1 AT2G05920 34.795 365 224 6 13 370 390 747 1.25e-73 243
MS.gene07524.t1 AT3G14067 36.267 375 218 9 13 372 399 767 1.47e-71 238
MS.gene07524.t1 AT1G20160 39.267 382 212 11 4 374 352 724 7.65e-69 230
MS.gene07524.t1 AT1G04110 35.979 378 217 10 11 373 404 771 1.47e-68 230
MS.gene07524.t1 AT1G20160 39.267 382 212 11 4 374 391 763 1.61e-68 230
MS.gene07524.t1 AT4G00230 39.467 375 195 11 9 374 394 745 6.65e-67 225
MS.gene07524.t1 AT2G04160 39.247 372 200 12 12 372 414 770 1.76e-66 224
MS.gene07524.t1 AT1G01900 38.786 379 213 10 8 373 400 772 3.20e-64 218
MS.gene07524.t1 AT4G26330 37.173 382 221 7 3 372 347 721 2.03e-62 213
MS.gene07524.t1 AT4G26330 37.173 382 221 7 3 372 361 735 2.88e-62 213
MS.gene07524.t1 AT5G59810 37.802 373 204 8 11 372 419 774 5.00e-61 210
MS.gene07524.t1 AT5G45650 37.859 383 203 12 8 373 425 789 5.44e-60 207
MS.gene07524.t1 AT5G45650 37.859 383 203 12 8 373 425 789 5.44e-60 207
MS.gene07524.t1 AT1G20150 38.727 377 207 11 13 374 405 772 4.03e-58 202
MS.gene07524.t1 AT4G10550 36.939 379 215 12 7 378 355 716 1.02e-57 200
MS.gene07524.t1 AT4G10550 36.939 379 215 12 7 378 355 716 1.02e-57 200
MS.gene07524.t1 AT3G46850 38.919 370 192 12 11 372 391 734 1.23e-57 200
MS.gene07524.t1 AT4G10550 36.939 379 215 12 7 378 411 772 1.66e-57 200
MS.gene07524.t1 AT4G10550 36.939 379 215 12 7 378 427 788 2.24e-57 200
MS.gene07524.t1 AT5G11940 37.183 355 199 10 32 379 422 759 2.47e-56 197
MS.gene07524.t1 AT4G10540 35.696 381 218 11 7 378 407 769 2.50e-55 194
MS.gene07524.t1 AT3G46840 37.166 374 193 13 11 372 391 734 3.34e-55 193
MS.gene07524.t1 AT1G32970 36.772 378 215 10 3 372 361 722 3.80e-54 190
MS.gene07524.t1 AT4G10510 34.715 386 225 13 4 379 348 716 7.58e-54 189
MS.gene07524.t1 AT4G10510 35.000 380 222 12 8 379 339 701 7.85e-54 189
MS.gene07524.t1 AT4G10510 34.715 386 225 13 4 379 392 760 1.15e-53 189
MS.gene07524.t1 AT4G10510 34.715 386 225 13 4 379 404 772 1.35e-53 189
MS.gene07524.t1 AT5G59100 36.170 376 204 11 11 375 390 740 3.53e-53 188
MS.gene07524.t1 AT5G03620 37.578 322 165 7 68 372 456 758 9.17e-53 187
MS.gene07524.t1 AT5G58840 35.870 368 198 12 13 372 369 706 1.51e-52 186
MS.gene07524.t1 AT5G58830 38.095 357 188 13 35 372 363 705 3.60e-52 185
MS.gene07524.t1 AT5G59090 37.027 370 199 13 12 372 384 728 4.49e-52 185
MS.gene07524.t1 AT5G59090 37.027 370 199 13 12 372 382 726 4.73e-52 185
MS.gene07524.t1 AT1G32960 34.715 386 225 11 3 378 403 771 4.93e-52 185
MS.gene07524.t1 AT5G59090 36.757 370 195 13 12 372 384 723 1.34e-51 183
MS.gene07524.t1 AT5G58820 38.503 374 194 15 5 372 357 700 3.68e-51 182
MS.gene07524.t1 AT5G59190 36.533 375 199 14 13 376 346 692 7.64e-51 181
MS.gene07524.t1 AT4G10520 36.842 342 198 7 40 378 424 750 9.78e-51 181
MS.gene07524.t1 AT1G32940 35.509 383 218 11 6 378 354 717 2.91e-50 179
MS.gene07524.t1 AT1G32940 35.509 383 218 11 6 378 354 717 2.91e-50 179
MS.gene07524.t1 AT1G32940 35.509 383 218 11 6 378 405 768 4.96e-50 179
MS.gene07524.t1 AT4G21326 40.367 327 172 8 50 372 380 687 8.55e-49 175
MS.gene07524.t1 AT4G21630 37.910 335 185 10 44 372 436 753 2.86e-48 174
MS.gene07524.t1 AT5G59130 36.667 360 190 11 35 372 343 686 7.28e-48 172
MS.gene07524.t1 AT4G21323 38.532 327 175 8 59 379 491 797 8.71e-48 173
MS.gene07524.t1 AT1G32950 34.031 382 225 11 6 378 353 716 9.06e-48 172
MS.gene07524.t1 AT5G59130 36.486 370 194 11 13 372 387 725 9.18e-48 173
MS.gene07524.t1 AT5G59130 36.486 370 194 11 13 372 383 721 1.03e-47 172
MS.gene07524.t1 AT1G32950 34.031 382 225 11 6 378 404 767 1.54e-47 172
MS.gene07524.t1 AT2G39850 35.013 377 200 17 29 376 409 769 1.69e-47 172
MS.gene07524.t1 AT5G59120 33.696 368 214 13 12 372 383 727 5.36e-47 171
MS.gene07524.t1 AT4G21650 37.026 343 192 11 37 372 435 760 1.65e-46 169
MS.gene07524.t1 AT1G66210 36.023 347 193 10 40 379 433 757 2.03e-46 169
MS.gene07524.t1 AT4G21640 39.032 310 166 10 69 372 435 727 2.18e-46 169
MS.gene07524.t1 AT5G59130 36.103 349 197 11 35 372 382 715 3.87e-46 168
MS.gene07524.t1 AT4G10530 33.721 344 197 7 38 378 426 741 1.13e-43 161
MS.gene07524.t1 AT1G66220 35.452 299 164 7 85 379 475 748 1.89e-43 161
MS.gene07524.t1 AT4G15040 34.656 378 200 11 10 372 340 685 2.04e-43 160
MS.gene07524.t1 AT4G15040 34.656 378 200 11 10 372 340 685 2.04e-43 160
MS.gene07524.t1 AT5G45640 32.708 373 223 12 13 373 396 752 2.26e-42 158
MS.gene07524.t1 AT1G32980 47.120 191 90 5 155 341 3 186 3.14e-41 144
MS.gene07524.t1 AT2G19170 36.426 291 155 11 97 371 533 809 5.72e-37 142
MS.gene07524.t1 AT2G19170 36.426 291 155 11 97 371 533 809 5.72e-37 142
MS.gene07524.t1 AT4G30020 35.811 296 160 12 97 376 534 815 5.54e-36 139
MS.gene07524.t1 AT4G30020 35.811 296 160 12 97 376 534 815 5.54e-36 139
MS.gene07524.t1 AT4G30020 35.811 296 160 12 97 376 534 815 5.54e-36 139
MS.gene07524.t1 AT4G30020 35.811 296 160 12 97 376 534 815 5.54e-36 139
MS.gene07524.t1 AT1G62340 31.051 409 196 17 33 375 444 832 8.18e-36 139
MS.gene07524.t1 AT5G44530 35.052 291 157 11 99 372 558 833 2.39e-34 135
MS.gene07524.t1 AT4G20430 34.589 292 159 11 99 373 549 825 3.33e-34 134
MS.gene07524.t1 AT1G30600 32.845 341 185 14 62 372 500 826 3.42e-34 134
MS.gene07524.t1 AT4G20430 34.589 292 159 11 99 373 573 849 3.53e-34 134
MS.gene07524.t1 AT4G20430 34.589 292 159 11 99 373 573 849 3.53e-34 134
MS.gene07524.t1 AT4G00230 41.463 205 101 6 9 209 394 583 4.39e-33 130
MS.gene07524.t1 AT5G44530 32.911 316 155 12 99 372 558 858 4.47e-31 125
MS.gene07524.t1 AT5G58840 35.359 181 96 5 13 190 369 531 4.43e-24 103
MS.gene07524.t1 AT5G03620 45.600 125 65 1 68 192 456 577 2.50e-22 99.0
MS.gene07524.t1 AT1G32940 35.437 206 117 6 6 205 405 600 1.21e-19 91.3
MS.gene07524.t1 AT5G59110 35.583 163 95 5 216 372 8 166 3.11e-18 82.0

Find 65 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATTGATTTGGTCAAAT+AGG 0.231583 1.2:-62502750 None:intergenic
GCTAGCATTGCACCAATTAA+AGG 0.236062 1.2:+62503594 MS.gene07524:CDS
TCATTAAACACCAACTTGTT+TGG 0.255326 1.2:-62503636 None:intergenic
TTGAATGCAGCAAAAGCTTT+TGG 0.264078 1.2:+62502772 MS.gene07524:CDS
GTGACACGAAACCCTTTAAT+TGG 0.274687 1.2:-62503606 None:intergenic
CTGCATTCAAATTATTGATT+TGG 0.289501 1.2:-62502759 None:intergenic
AAATTAAAGAAAGTGGCTTT+TGG 0.323736 1.2:+62503711 MS.gene07524:CDS
CATTAAACACCAACTTGTTT+GGG 0.335235 1.2:-62503635 None:intergenic
CCAGGGTCAAGTGCTCTATT+AGG 0.357114 1.2:-62503333 None:intergenic
TTGACAATTTCACCATTCAT+TGG 0.357479 1.2:-62502865 None:intergenic
TGAAAGGAGTGCATAGTGAT+TGG 0.379645 1.2:+62503181 MS.gene07524:CDS
ATGATGGAAATTCTTCTTCA+AGG 0.390280 1.2:+62503511 MS.gene07524:CDS
TGTGATAAGTGGAACATCTA+TGG 0.398520 1.2:+62503125 MS.gene07524:CDS
TTGAGGCTGGTGACCACAAT+AGG 0.402287 1.2:-62503774 None:intergenic
ATGGCGTGTCCTCATGTTGC+AGG 0.412710 1.2:+62503144 MS.gene07524:CDS
AGCGAATTCAATGTGATAAG+TGG 0.413723 1.2:+62503114 MS.gene07524:CDS
CTAGCATTGCACCAATTAAA+GGG 0.414915 1.2:+62503595 MS.gene07524:CDS
TGATTGCTCTAAACCTTCCT+TGG 0.422318 1.2:+62503455 MS.gene07524:CDS
GAATCTAGAATTTCAATTTG+AGG 0.433320 1.2:-62503791 None:intergenic
CCTGGACTTGTTTATGATGT+TGG 0.437192 1.2:+62503351 MS.gene07524:CDS
GGAAGGTTTAGAGCAATCAT+TGG 0.449304 1.2:-62503451 None:intergenic
ATTGGAGCCCAGCAGCTATT+CGG 0.456616 1.2:+62503199 MS.gene07524:CDS
TCCAACACAGGAACATTTGT+AGG 0.457074 1.2:-62503069 None:intergenic
CATAGAACAGTTACCAATGT+TGG 0.459195 1.2:+62503549 MS.gene07524:CDS
CTAGAATTTCAATTTGAGGC+TGG 0.467619 1.2:-62503787 None:intergenic
TATGACAAAATTAAAGAAAG+TGG 0.475264 1.2:+62503704 MS.gene07524:CDS
ATCATTGTTAATCCAATGAA+TGG 0.476760 1.2:+62502853 MS.gene07524:CDS
ATTCATTGGATTAACAATGA+TGG 0.477861 1.2:-62502851 None:intergenic
AGAAGCTAAGCTACAAATTG+AGG 0.490516 1.2:+62503667 MS.gene07524:CDS
GTTCTATGAAATTCTTGTAT+CGG 0.496052 1.2:-62503534 None:intergenic
ATTGCCGACCGAATAGCTGC+TGG 0.510132 1.2:-62503207 None:intergenic
TGCCGCTAAGATCGAAGTAC+CGG 0.513591 1.2:-62503043 None:intergenic
TGACCAGCTCCCAATGCAAA+AGG 0.515149 1.2:-62503303 None:intergenic
TGCTTGTCCGTCACCAACAT+TGG 0.519518 1.2:-62503562 None:intergenic
TTTAGAGCAATCATTGGAAG+AGG 0.527393 1.2:-62503445 None:intergenic
TGTGAAGACAAGAATGGAAC+TGG 0.534251 1.2:+62502727 MS.gene07524:CDS
CCAACATCATAAACAAGTCC+AGG 0.542527 1.2:-62503351 None:intergenic
GTACCGGGTGCAGTAATGTC+AGG 0.544360 1.2:-62503027 None:intergenic
TACGAATCAACACTAGGTGC+TGG 0.546608 1.2:-62502961 None:intergenic
CACTGTTATCCCAAACAAGT+TGG 0.557580 1.2:+62503626 MS.gene07524:CDS
GCCTACAAATGTTCCTGTGT+TGG 0.558529 1.2:+62503068 MS.gene07524:CDS
ACGAATGGACAACTATATGA+TGG 0.560428 1.2:-62502997 None:intergenic
AGAAGGGTAGTTAAGATCCA+AGG 0.564628 1.2:-62503472 None:intergenic
AAGGAACACATCAAAGACAT+TGG 0.567669 1.2:+62503261 MS.gene07524:CDS
GTTGATTCGTATAGTTCAAG+AGG 0.572994 1.2:+62502973 MS.gene07524:CDS
TCCTCATGTTGCAGGTGTCG+CGG 0.581039 1.2:+62503152 MS.gene07524:CDS
CCTAATAGAGCACTTGACCC+TGG 0.582345 1.2:+62503333 MS.gene07524:CDS
TGAGACTCAAATTCCAACAC+AGG 0.582851 1.2:-62503081 None:intergenic
ATGTCAGGTTTCAACACGAA+TGG 0.584244 1.2:-62503012 None:intergenic
AGACATATTTGATAATGCTA+AGG 0.587983 1.2:+62503242 MS.gene07524:CDS
AAACCTGACATTACTGCACC+CGG 0.592592 1.2:+62503024 MS.gene07524:CDS
TTGCCGACCGAATAGCTGCT+GGG 0.596434 1.2:-62503206 None:intergenic
ACCCGGTACTTCGATCTTAG+CGG 0.602662 1.2:+62503041 MS.gene07524:CDS
GTACTTCGATCTTAGCGGCA+TGG 0.611328 1.2:+62503046 MS.gene07524:CDS
GGGTAGTTAAGATCCAAGGA+AGG 0.612984 1.2:-62503468 None:intergenic
TGTTGTTAGAAGTCCTATTG+TGG 0.614388 1.2:+62503761 MS.gene07524:CDS
GCCGCGACACCTGCAACATG+AGG 0.621524 1.2:-62503153 None:intergenic
ATTGGAAGAGGATCTTGTGA+TGG 0.630373 1.2:-62503433 None:intergenic
ATAGTGTGTGAAGACAAGAA+TGG 0.635090 1.2:+62502721 MS.gene07524:CDS
GAACTATACGAATCAACACT+AGG 0.641343 1.2:-62502967 None:intergenic
GCCGCTAAGATCGAAGTACC+GGG 0.646643 1.2:-62503042 None:intergenic
GAGCCCAGCAGCTATTCGGT+CGG 0.647472 1.2:+62503203 MS.gene07524:CDS
TTGATTCGTATAGTTCAAGA+GGG 0.648596 1.2:+62502974 MS.gene07524:CDS
ACAGTTACCAATGTTGGTGA+CGG 0.649485 1.2:+62503555 MS.gene07524:CDS
CAACATCATAAACAAGTCCA+GGG 0.666695 1.2:-62503350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGACAAAATTAAAGAAAG+TGG + chr1.2:62503704-62503723 MS.gene07524:CDS 20.0%
!! TGAAAAAAGCAATAAAAGAA+GGG - chr1.2:62503491-62503510 None:intergenic 20.0%
!! TTGAAAAAAGCAATAAAAGA+AGG - chr1.2:62503492-62503511 None:intergenic 20.0%
!!! AATTATTGATTTGGTCAAAT+AGG - chr1.2:62502753-62502772 None:intergenic 20.0%
!!! TTTATTGCTTTTTTCAATGA+TGG + chr1.2:62503495-62503514 MS.gene07524:CDS 20.0%
! ATCATTGTTAATCCAATGAA+TGG + chr1.2:62502853-62502872 MS.gene07524:CDS 25.0%
! ATTCATTGGATTAACAATGA+TGG - chr1.2:62502854-62502873 None:intergenic 25.0%
! GTTCTATGAAATTCTTGTAT+CGG - chr1.2:62503537-62503556 None:intergenic 25.0%
!! AAATTAAAGAAAGTGGCTTT+TGG + chr1.2:62503711-62503730 MS.gene07524:CDS 25.0%
!! CTGCATTCAAATTATTGATT+TGG - chr1.2:62502762-62502781 None:intergenic 25.0%
!! TCTTTCATGAAAACAGTTTT+TGG + chr1.2:62502931-62502950 MS.gene07524:CDS 25.0%
!!! AGACATATTTGATAATGCTA+AGG + chr1.2:62503242-62503261 MS.gene07524:CDS 25.0%
TTGACAATTTCACCATTCAT+TGG - chr1.2:62502868-62502887 None:intergenic 30.0%
! ATGATGGAAATTCTTCTTCA+AGG + chr1.2:62503511-62503530 MS.gene07524:CDS 30.0%
! CATTAAACACCAACTTGTTT+GGG - chr1.2:62503638-62503657 None:intergenic 30.0%
! TCATTAAACACCAACTTGTT+TGG - chr1.2:62503639-62503658 None:intergenic 30.0%
! TTGATTCGTATAGTTCAAGA+GGG + chr1.2:62502974-62502993 MS.gene07524:CDS 30.0%
! TTTTGGATATCTAACATGGA+TGG + chr1.2:62503728-62503747 MS.gene07524:CDS 30.0%
AAGGAACACATCAAAGACAT+TGG + chr1.2:62503261-62503280 MS.gene07524:CDS 35.0%
ACGAATGGACAACTATATGA+TGG - chr1.2:62503000-62503019 None:intergenic 35.0%
AGAAGCTAAGCTACAAATTG+AGG + chr1.2:62503667-62503686 MS.gene07524:CDS 35.0%
AGCGAATTCAATGTGATAAG+TGG + chr1.2:62503114-62503133 MS.gene07524:CDS 35.0%
ATAGTGTGTGAAGACAAGAA+TGG + chr1.2:62502721-62502740 MS.gene07524:CDS 35.0%
CAACATCATAAACAAGTCCA+GGG - chr1.2:62503353-62503372 None:intergenic 35.0%
CATAGAACAGTTACCAATGT+TGG + chr1.2:62503549-62503568 MS.gene07524:CDS 35.0%
CTAGCATTGCACCAATTAAA+GGG + chr1.2:62503595-62503614 MS.gene07524:CDS 35.0%
GAACTATACGAATCAACACT+AGG - chr1.2:62502970-62502989 None:intergenic 35.0%
TGTGATAAGTGGAACATCTA+TGG + chr1.2:62503125-62503144 MS.gene07524:CDS 35.0%
TGTTGTTAGAAGTCCTATTG+TGG + chr1.2:62503761-62503780 MS.gene07524:CDS 35.0%
! CTAGAATTTCAATTTGAGGC+TGG - chr1.2:62503790-62503809 None:intergenic 35.0%
! TGGCTTTTGGATATCTAACA+TGG + chr1.2:62503724-62503743 MS.gene07524:CDS 35.0%
! TTGAATGCAGCAAAAGCTTT+TGG + chr1.2:62502772-62502791 MS.gene07524:CDS 35.0%
! TTTAGAGCAATCATTGGAAG+AGG - chr1.2:62503448-62503467 None:intergenic 35.0%
!! GTTGATTCGTATAGTTCAAG+AGG + chr1.2:62502973-62502992 MS.gene07524:CDS 35.0%
AGAAGGGTAGTTAAGATCCA+AGG - chr1.2:62503475-62503494 None:intergenic 40.0%
ATGTCAGGTTTCAACACGAA+TGG - chr1.2:62503015-62503034 None:intergenic 40.0%
ATTGGAAGAGGATCTTGTGA+TGG - chr1.2:62503436-62503455 None:intergenic 40.0%
CACTGTTATCCCAAACAAGT+TGG + chr1.2:62503626-62503645 MS.gene07524:CDS 40.0%
CCAACATCATAAACAAGTCC+AGG - chr1.2:62503354-62503373 None:intergenic 40.0%
GCTAGCATTGCACCAATTAA+AGG + chr1.2:62503594-62503613 MS.gene07524:CDS 40.0%
GTGACACGAAACCCTTTAAT+TGG - chr1.2:62503609-62503628 None:intergenic 40.0%
TCCAACACAGGAACATTTGT+AGG - chr1.2:62503072-62503091 None:intergenic 40.0%
TGAGACTCAAATTCCAACAC+AGG - chr1.2:62503084-62503103 None:intergenic 40.0%
TGTGAAGACAAGAATGGAAC+TGG + chr1.2:62502727-62502746 MS.gene07524:CDS 40.0%
! ACAGTTACCAATGTTGGTGA+CGG + chr1.2:62503555-62503574 MS.gene07524:CDS 40.0%
! CCTGGACTTGTTTATGATGT+TGG + chr1.2:62503351-62503370 MS.gene07524:CDS 40.0%
! GGAAGGTTTAGAGCAATCAT+TGG - chr1.2:62503454-62503473 None:intergenic 40.0%
! TGAAAGGAGTGCATAGTGAT+TGG + chr1.2:62503181-62503200 MS.gene07524:CDS 40.0%
! TGATTGCTCTAAACCTTCCT+TGG + chr1.2:62503455-62503474 MS.gene07524:CDS 40.0%
AAACCTGACATTACTGCACC+CGG + chr1.2:62503024-62503043 MS.gene07524:CDS 45.0%
GCCTACAAATGTTCCTGTGT+TGG + chr1.2:62503068-62503087 MS.gene07524:CDS 45.0%
GGGTAGTTAAGATCCAAGGA+AGG - chr1.2:62503471-62503490 None:intergenic 45.0%
TACGAATCAACACTAGGTGC+TGG - chr1.2:62502964-62502983 None:intergenic 45.0%
! AGCAGCAACACCTTTTGCAT+TGG + chr1.2:62503293-62503312 MS.gene07524:CDS 45.0%
! GCAGCAACACCTTTTGCATT+GGG + chr1.2:62503294-62503313 MS.gene07524:CDS 45.0%
ACCCGGTACTTCGATCTTAG+CGG + chr1.2:62503041-62503060 MS.gene07524:CDS 50.0%
ATTGGAGCCCAGCAGCTATT+CGG + chr1.2:62503199-62503218 MS.gene07524:CDS 50.0%
CCAGGGTCAAGTGCTCTATT+AGG - chr1.2:62503336-62503355 None:intergenic 50.0%
GTACTTCGATCTTAGCGGCA+TGG + chr1.2:62503046-62503065 MS.gene07524:CDS 50.0%
TGACCAGCTCCCAATGCAAA+AGG - chr1.2:62503306-62503325 None:intergenic 50.0%
TGCCGCTAAGATCGAAGTAC+CGG - chr1.2:62503046-62503065 None:intergenic 50.0%
TGCTTGTCCGTCACCAACAT+TGG - chr1.2:62503565-62503584 None:intergenic 50.0%
TTGAGGCTGGTGACCACAAT+AGG - chr1.2:62503777-62503796 None:intergenic 50.0%
! ACACCTTTTGCATTGGGAGC+TGG + chr1.2:62503300-62503319 MS.gene07524:CDS 50.0%
! CCTAATAGAGCACTTGACCC+TGG + chr1.2:62503333-62503352 MS.gene07524:CDS 50.0%
ATGGCGTGTCCTCATGTTGC+AGG + chr1.2:62503144-62503163 MS.gene07524:CDS 55.0%
ATTGCCGACCGAATAGCTGC+TGG - chr1.2:62503210-62503229 None:intergenic 55.0%
GTACCGGGTGCAGTAATGTC+AGG - chr1.2:62503030-62503049 None:intergenic 55.0%
TTGCCGACCGAATAGCTGCT+GGG - chr1.2:62503209-62503228 None:intergenic 55.0%
! GCCGCTAAGATCGAAGTACC+GGG - chr1.2:62503045-62503064 None:intergenic 55.0%
! TCCTCATGTTGCAGGTGTCG+CGG + chr1.2:62503152-62503171 MS.gene07524:CDS 55.0%
GAGCCCAGCAGCTATTCGGT+CGG + chr1.2:62503203-62503222 MS.gene07524:CDS 60.0%
!! GGTGTCGCGGCGCTTTTGAA+AGG + chr1.2:62503165-62503184 MS.gene07524:CDS 60.0%
GCCGCGACACCTGCAACATG+AGG - chr1.2:62503156-62503175 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62502670 62503809 62502670 ID=MS.gene07524
chr1.2 mRNA 62502670 62503809 62502670 ID=MS.gene07524.t1;Parent=MS.gene07524
chr1.2 exon 62502670 62503809 62502670 ID=MS.gene07524.t1.exon1;Parent=MS.gene07524.t1
chr1.2 CDS 62502670 62503809 62502670 ID=cds.MS.gene07524.t1;Parent=MS.gene07524.t1
Gene Sequence

>MS.gene07524

ATGGATTTATGTGACAATTTTAATGAATTGAAAAAAGTGAAAAGCAAGATTATAGTGTGTGAAGACAAGAATGGAACTGGCCTATTTGACCAAATCAATAATTTGAATGCAGCAAAAGCTTTTGGAGCTGTTTTGATTTCAAATGTCTCAGACATATTCTATTCACAGAATAGCTTTGCAACCATCATTGTTAATCCAATGAATGGTGAAATTGTCAAAGCTTACATCAAAAGTAGTAACTCTACTTCAATTGCAAGCATGTCTTTCATGAAAACAGTTTTTGGAACTAAACCAGCACCTAGTGTTGATTCGTATAGTTCAAGAGGGCCATCATATAGTTGTCCATTCGTGTTGAAACCTGACATTACTGCACCCGGTACTTCGATCTTAGCGGCATGGCCTACAAATGTTCCTGTGTTGGAATTTGAGTCTCAAAAACATTTCAGCGAATTCAATGTGATAAGTGGAACATCTATGGCGTGTCCTCATGTTGCAGGTGTCGCGGCGCTTTTGAAAGGAGTGCATAGTGATTGGAGCCCAGCAGCTATTCGGTCGGCAATAATGACAACATCAGACATATTTGATAATGCTAAGGAACACATCAAAGACATTGGAACAGACAAAGCAGCAACACCTTTTGCATTGGGAGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCTGGACTTGTTTATGATGTTGGTGTACAAGATTATGTGAATCTTCTTTGTGCACTTAAATACTCACAAAAAAACATCACTACCATCACAAGATCCTCTTCCAATGATTGCTCTAAACCTTCCTTGGATCTTAACTACCCTTCTTTTATTGCTTTTTTCAATGATGGAAATTCTTCTTCAAGGCCGATACAAGAATTTCATAGAACAGTTACCAATGTTGGTGACGGACAAGCAATTTATGTTGCTAGCATTGCACCAATTAAAGGGTTTCGTGTCACTGTTATCCCAAACAAGTTGGTGTTTAATGAGAAGAATGAGAAGCTAAGCTACAAATTGAGGATTGAAGTTGCAAGTATGACAAAATTAAAGAAAGTGGCTTTTGGATATCTAACATGGATGGATGTGAAGCATGTTGTTAGAAGTCCTATTGTGGTCACCAGCCTCAAATTGAAATTCTAG

Protein sequence

>MS.gene07524.t1

MDLCDNFNELKKVKSKIIVCEDKNGTGLFDQINNLNAAKAFGAVLISNVSDIFYSQNSFATIIVNPMNGEIVKAYIKSSNSTSIASMSFMKTVFGTKPAPSVDSYSSRGPSYSCPFVLKPDITAPGTSILAAWPTNVPVLEFESQKHFSEFNVISGTSMACPHVAGVAALLKGVHSDWSPAAIRSAIMTTSDIFDNAKEHIKDIGTDKAATPFALGAGHVNPNRALDPGLVYDVGVQDYVNLLCALKYSQKNITTITRSSSNDCSKPSLDLNYPSFIAFFNDGNSSSRPIQEFHRTVTNVGDGQAIYVASIAPIKGFRVTVIPNKLVFNEKNEKLSYKLRIEVASMTKLKKVAFGYLTWMDVKHVVRSPIVVTSLKLKF