AlfalfaGEDB | MS.gene99808

M. sativa cultivar XinJiangDaYe / MS.gene99808

KEGG: -
GO: -
PFAM: PF09353.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99808.t1	XP_003596614.1	95.3	341	16	0	1	341	1	341	1.30E-176	629

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99808.t1	G7IHE1	95.3	341	16	0	1	341	1	341	9.1e-177	629.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene99808	0.889961	1.51E-73	-1.69E-46
MS.gene049171	MS.gene99808	0.902843	6.40E-79	-1.69E-46
MS.gene049173	MS.gene99808	0.848446	6.10E-60	-1.69E-46
MS.gene049217	MS.gene99808	0.92883	1.66E-92	-1.69E-46
MS.gene049222	MS.gene99808	0.911604	5.04E-83	-1.69E-46
MS.gene049232	MS.gene99808	0.831211	1.90E-55	-1.69E-46
MS.gene049285	MS.gene99808	0.920583	1.06E-87	-1.69E-46
MS.gene049320	MS.gene99808	0.911009	9.87E-83	-1.69E-46
MS.gene04939	MS.gene99808	0.835851	1.32E-56	-1.69E-46
MS.gene049427	MS.gene99808	0.863063	3.25E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99808.t1	MTR_2g082660	95.308	341	16	0	1	341	1	341	0.0	616

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99808.t1	AT3G20680	57.692	312	120	6	37	341	32	338	2.21e-111	328

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Find 74 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTATTGATGTAAATT+TGG	0.260338	2.3:+14818045	None:intergenic
AACTGAAACAACCAAGATTT+CGG	0.245251	2.3:-14817808	MS.gene99808:CDS
AACTTCGCAGACTTCGTTAT+CGG	0.363743	2.3:+14817170	None:intergenic
AAGATTTCGGGTTGAAATCC+CGG	0.446170	2.3:-14817795	MS.gene99808:CDS
AAGTCTGCGAAGTTCATCAA+GGG	0.623822	2.3:-14817161	MS.gene99808:CDS
AATCTTGAATTCTTCTGATG+TGG	0.534326	2.3:-14817564	MS.gene99808:CDS
ACTGAAACAACCAAGATTTC+GGG	0.348629	2.3:-14817807	MS.gene99808:CDS
ACTGACAATTTAGAACTCTC+TGG	0.544169	2.3:+14817527	None:intergenic
AGAAGGTGAGGAAATGAAGG+TGG	0.605802	2.3:-14817267	MS.gene99808:CDS
AGAGAGTTCTAAATTGTCAG+TGG	0.670269	2.3:-14817525	MS.gene99808:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGAAACAACCAAGATTT+CGG	-	chr2.3:14817455-14817474	MS.gene99808:CDS	30.0%
AATCTTGAATTCTTCTGATG+TGG	-	chr2.3:14817699-14817718	MS.gene99808:CDS	30.0%
CAGAAGAATTCAAGATTCTT+GGG	+	chr2.3:14817696-14817715	None:intergenic	30.0%
CTCAATAACCCTAAACTAAT+AGG	-	chr2.3:14817421-14817440	MS.gene99808:CDS	30.0%
GACATACCAATCAAAAGAAA+AGG	-	chr2.3:14817544-14817563	MS.gene99808:CDS	30.0%
GGTAATGTTGAATCCAAAAT+GGG	-	chr2.3:14817798-14817817	MS.gene99808:CDS	30.0%
TAAATTGTCAGTGGTGAAAA+TGG	-	chr2.3:14817747-14817766	MS.gene99808:CDS	30.0%
TCAGAAGAATTCAAGATTCT+TGG	+	chr2.3:14817697-14817716	None:intergenic	30.0%
TTTGAGGAAGAGAAAAACTT+TGG	-	chr2.3:14817823-14817842	MS.gene99808:CDS	30.0%
ACTGAAACAACCAAGATTTC+GGG	-	chr2.3:14817456-14817475	MS.gene99808:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	14817130	14818155	14817130	ID=MS.gene99808
chr2.3	mRNA	14817130	14818155	14817130	ID=MS.gene99808.t1;Parent=MS.gene99808
chr2.3	exon	14817130	14818155	14817130	ID=MS.gene99808.t1.exon1;Parent=MS.gene99808.t1
chr2.3	CDS	14817130	14818155	14817130	ID=cds.MS.gene99808.t1;Parent=MS.gene99808.t1

Gene Sequence

>MS.gene99808

ATGGCATCATCATTCTATCTTCACACAATTCATTCACAATCTACCAAAATTTCCAATCCATCATCATGCATACATGCACATTCCAATACCAAATTTACATCAATACCATTTCATACTCATTATCAATGCAAACACTACCATATATCATGCATCCCTCAAAACCCTACTGTTCCCCTCAAAGCTACATCCACATCCATCCAGTCCTCACTCCCTTCCCCTAACCCACCCATCTCAAAGGAAGATGCCATACTTCAAGCCAAAACATCCCTTTCAACAACCTTAGAGAAGCCTCTCAATAACCCTAAACTAATAGGCAAAATCAAGAAACTGAAACAACCAAGATTTCGGGTTGAAATCCCGGTCATCGATGACTCGCCGGATTCAGTTTGTAAACTGGCTCTTGATATTTTTGGGGACATACCAATCAAAAGAAAAGGTTCTCCAATTAAGATCTTAATCATTTGGCCTAATCCTAGCTTAAAAAAAGCTGCAATTGTTGCTTTTGAGTCTCATTCAAGGAACCAAGTTGAACACATTGACATTGTTTCAGTTGATAAAACTGACCCAAGAATCTTGAATTCTTCTGATGTGGCAGTGTTTTTGGTGCCAGAGAGTTCTAAATTGTCAGTGGTGAAAATGGTGAGTGATGCTTTTAATCCAAAGCCAGTGGTAATGTTGAATCCAAAATGGGCATTTGAGGAAGAGAAAAACTTTGGTGATCTAAGTGGTTTTGTGAGTTCTTTTGAAGTGGTTTATTCTTTTATGGGATTGGAGGTGAGAGGGATATTGAGCAAAAGAAAAGGAGTGATTTTTAAGTGTGTGAGAGATGGGGTTGTGAGTGCAGAGAAATGGAATGTTCTTGTTGAAGAAGGTGAGGAAATGAAGGTGGTTTCTTCATTCAAGGTTAGGCCAACTATTGGCGAAGTTGAGATTGTTTTGTATAATTTGATGGCTGTTAATTCGCCGATAACGAAGTCTGCGAAGTTCATCAAGGGATTGGTGTCGAATGTGACAGGCAAAAAGTAA

Protein sequence

>MS.gene99808.t1

MASSFYLHTIHSQSTKISNPSSCIHAHSNTKFTSIPFHTHYQCKHYHISCIPQNPTVPLKATSTSIQSSLPSPNPPISKEDAILQAKTSLSTTLEKPLNNPKLIGKIKKLKQPRFRVEIPVIDDSPDSVCKLALDIFGDIPIKRKGSPIKILIIWPNPSLKKAAIVAFESHSRNQVEHIDIVSVDKTDPRILNSSDVAVFLVPESSKLSVVKMVSDAFNPKPVVMLNPKWAFEEEKNFGDLSGFVSSFEVVYSFMGLEVRGILSKRKGVIFKCVRDGVVSAEKWNVLVEEGEEMKVVSSFKVRPTIGEVEIVLYNLMAVNSPITKSAKFIKGLVSNVTGKK