AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045628.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045628.01.T01 MTR_8g075510 92.256 297 4 1 1 278 1 297 0.0 549
MsG0880045628.01.T01 MTR_8g075510 91.532 248 2 1 1 229 1 248 1.96e-164 456
MsG0880045628.01.T01 MTR_5g022350 58.228 316 94 6 1 284 1 310 1.96e-122 352
MsG0880045628.01.T01 MTR_4g073720 62.712 236 65 3 11 224 5 239 5.06e-100 296
MsG0880045628.01.T01 MTR_1g025420 58.233 249 75 6 14 233 6 254 2.38e-88 266
MsG0880045628.01.T01 MTR_1g025420 57.895 247 75 6 14 231 6 252 9.62e-87 260
MsG0880045628.01.T01 MTR_8g037890 53.030 264 92 8 10 244 4 264 2.67e-82 251
MsG0880045628.01.T01 MTR_3g114030 57.265 234 71 6 28 232 4 237 7.71e-81 244
MsG0880045628.01.T01 MTR_5g022310 52.896 259 86 9 10 233 3 260 7.18e-77 236
MsG0880045628.01.T01 MTR_8g075550 55.000 240 73 7 28 233 25 263 1.01e-76 236
MsG0880045628.01.T01 MTR_5g022310 52.964 253 84 8 10 228 3 254 1.86e-76 233
MsG0880045628.01.T01 MTR_6g079580 50.622 241 88 7 13 225 3 240 2.59e-75 230
MsG0880045628.01.T01 MTR_4g073730 48.679 265 101 7 13 243 3 266 5.14e-74 228
MsG0880045628.01.T01 MTR_4g073730 48.679 265 101 7 13 243 3 266 6.49e-74 229
MsG0880045628.01.T01 MTR_8g036215 53.017 232 81 6 19 224 8 237 2.08e-72 223
MsG0880045628.01.T01 MTR_7g102380 46.502 243 102 5 12 227 2 243 4.20e-72 222
MsG0880045628.01.T01 MTR_3g111620 51.822 247 88 8 10 228 6 249 2.59e-70 218
MsG0880045628.01.T01 MTR_8g107140 51.883 239 85 6 14 225 10 245 2.86e-70 218
MsG0880045628.01.T01 MTR_8g056820 48.790 248 97 7 15 234 11 256 7.68e-70 217
MsG0880045628.01.T01 MTR_1g021945 53.017 232 78 7 25 228 20 248 1.57e-69 216
MsG0880045628.01.T01 MTR_2g069660 45.607 239 100 4 17 225 5 243 6.92e-68 211
MsG0880045628.01.T01 MTR_1g062590 47.436 234 95 5 19 225 10 242 8.70e-68 211
MsG0880045628.01.T01 MTR_1g062370 47.034 236 97 5 19 227 10 244 1.55e-65 205
MsG0880045628.01.T01 MTR_1g062350 47.034 236 97 5 19 227 10 244 1.75e-65 205
MsG0880045628.01.T01 MTR_1g062630 44.915 236 102 5 19 227 10 244 3.54e-65 205
MsG0880045628.01.T01 MTR_1g062660 45.679 243 104 5 12 227 3 244 5.28e-65 204
MsG0880045628.01.T01 MTR_1g062340 47.009 234 96 5 21 227 12 244 5.83e-65 204
MsG0880045628.01.T01 MTR_5g059200 43.446 267 122 8 15 257 13 274 3.18e-64 203
MsG0880045628.01.T01 MTR_5g022350 59.873 157 44 1 1 138 66 222 5.50e-62 196
MsG0880045628.01.T01 MTR_2g067980 43.077 260 107 8 27 255 20 269 6.79e-58 199
MsG0880045628.01.T01 MTR_3g068015 43.852 244 103 9 14 225 7 248 1.05e-56 183
MsG0880045628.01.T01 MTR_2g068030 44.091 220 94 6 33 224 25 243 1.93e-56 182
MsG0880045628.01.T01 MTR_7g062610 41.176 238 111 5 15 225 7 242 1.17e-54 177
MsG0880045628.01.T01 MTR_2g068655 42.291 227 102 7 29 227 29 254 2.75e-52 173
MsG0880045628.01.T01 MTR_1g062690 41.702 235 87 5 19 227 10 220 6.17e-52 169
MsG0880045628.01.T01 MTR_5g010635 43.636 220 99 8 29 232 22 232 4.51e-50 166
MsG0880045628.01.T01 MTR_5g010640 41.810 232 107 8 16 225 11 236 7.70e-49 162
MsG0880045628.01.T01 MTR_6g009480 40.650 246 110 10 15 226 10 253 9.29e-48 160
MsG0880045628.01.T01 MTR_4g063630 37.759 241 113 7 15 224 17 251 1.18e-46 157
MsG0880045628.01.T01 MTR_8g096900 41.048 229 105 10 14 225 33 248 2.95e-46 156
MsG0880045628.01.T01 MTR_8g089020 52.756 127 55 2 93 216 32 156 9.62e-42 141
MsG0880045628.01.T01 MTR_2g067990 37.903 248 118 11 28 255 24 255 3.92e-36 137
MsG0880045628.01.T01 MTR_2g067970 40.331 181 98 6 56 228 7 185 5.47e-36 137
MsG0880045628.01.T01 MTR_5g023850 35.573 253 102 10 3 228 1 219 8.15e-36 128
MsG0880045628.01.T01 MTR_7g076360 39.896 193 66 4 29 214 6 155 2.56e-35 125
MsG0880045628.01.T01 MTR_1g062390 33.750 240 125 9 13 226 8 239 4.34e-31 116
MsG0880045628.01.T01 MTR_2g063150 31.799 239 119 9 14 216 12 242 3.11e-27 106
MsG0880045628.01.T01 MTR_8g096910 40.789 152 63 8 14 148 9 150 2.98e-23 94.0
MsG0880045628.01.T01 MTR_8g096920 28.070 228 90 7 15 225 3 173 2.31e-20 86.3
MsG0880045628.01.T01 MTR_1g062640 41.304 92 52 2 58 148 56 146 9.69e-16 73.2
MsG0880045628.01.T01 MTR_8g088960 43.750 80 41 3 103 180 8 85 1.34e-12 63.2
MsG0880045628.01.T01 MTR_5g068670 53.226 62 27 2 65 125 29 89 3.53e-12 62.8
MsG0880045628.01.T01 MTR_3g081550 43.617 94 46 3 94 180 16 109 5.38e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045628.01.T01 AT4G38660 59.387 261 80 5 1 239 2 258 1.85e-97 290
MsG0880045628.01.T01 AT4G38660 64.069 231 59 4 31 239 8 236 8.77e-96 285
MsG0880045628.01.T01 AT4G24180 53.177 299 104 9 1 265 1 297 1.19e-94 282
MsG0880045628.01.T01 AT4G24180 53.535 297 101 10 1 265 1 292 4.75e-94 280
MsG0880045628.01.T01 AT4G24180 57.752 258 76 7 1 226 1 257 2.45e-92 274
MsG0880045628.01.T01 AT4G24180 58.203 256 73 8 1 226 1 252 1.15e-91 272
MsG0880045628.01.T01 AT4G24180 55.187 241 76 6 1 209 1 241 4.33e-82 250
MsG0880045628.01.T01 AT4G24180 55.649 239 73 7 1 209 1 236 3.12e-81 248
MsG0880045628.01.T01 AT1G20030 56.250 240 74 5 28 236 17 256 1.81e-80 246
MsG0880045628.01.T01 AT1G20030 57.203 236 70 5 32 236 4 239 2.55e-80 245
MsG0880045628.01.T01 AT1G75800 52.344 256 91 5 15 239 7 262 6.01e-80 245
MsG0880045628.01.T01 AT1G75030 51.004 249 89 7 8 228 3 246 9.11e-76 231
MsG0880045628.01.T01 AT1G75050 51.452 241 86 7 16 228 9 246 9.46e-74 226
MsG0880045628.01.T01 AT2G17860 52.653 245 82 7 17 228 9 252 1.78e-73 226
MsG0880045628.01.T01 AT4G36010 53.086 243 79 7 28 236 20 261 5.79e-73 226
MsG0880045628.01.T01 AT4G36010 53.086 243 79 7 28 236 20 261 5.79e-73 226
MsG0880045628.01.T01 AT1G19320 49.802 253 91 7 1 224 1 246 6.06e-73 224
MsG0880045628.01.T01 AT1G18250 50.885 226 77 6 29 225 19 239 5.53e-69 214
MsG0880045628.01.T01 AT1G73620 52.000 225 76 6 29 225 40 260 6.32e-69 214
MsG0880045628.01.T01 AT4G38670 47.727 264 105 8 12 243 3 265 1.27e-68 214
MsG0880045628.01.T01 AT4G38670 47.727 264 105 8 12 243 3 265 1.27e-68 214
MsG0880045628.01.T01 AT1G18250 50.442 226 78 6 29 225 20 240 1.33e-68 213
MsG0880045628.01.T01 AT1G75040 50.638 235 87 7 16 225 9 239 3.84e-68 212
MsG0880045628.01.T01 AT4G36000 56.364 220 66 7 85 286 1 208 4.88e-68 210
MsG0880045628.01.T01 AT4G36000 56.364 220 66 7 85 286 1 208 4.88e-68 210
MsG0880045628.01.T01 AT5G24620 45.522 268 107 8 15 245 6 271 9.59e-68 216
MsG0880045628.01.T01 AT5G24620 45.522 268 107 8 15 245 61 326 1.68e-67 218
MsG0880045628.01.T01 AT5G24620 45.522 268 107 8 15 245 82 347 1.68e-67 218
MsG0880045628.01.T01 AT4G38670 48.374 246 97 6 28 243 4 249 4.50e-66 207
MsG0880045628.01.T01 AT1G77700 48.117 239 97 7 10 226 40 273 5.40e-65 207
MsG0880045628.01.T01 AT1G77700 46.215 251 108 7 10 238 40 285 1.03e-64 206
MsG0880045628.01.T01 AT1G77700 50.000 220 83 7 29 226 87 301 9.53e-63 202
MsG0880045628.01.T01 AT5G38280 39.223 283 136 6 15 266 9 286 2.64e-62 208
MsG0880045628.01.T01 AT5G38280 39.576 283 135 6 15 266 9 286 2.68e-62 208
MsG0880045628.01.T01 AT5G02140 40.000 295 138 8 9 270 3 291 1.54e-56 184
MsG0880045628.01.T01 AT5G02140 43.265 245 105 7 9 225 3 241 1.62e-55 179
MsG0880045628.01.T01 AT5G40020 41.564 243 112 6 13 227 10 250 8.24e-55 178
MsG0880045628.01.T01 AT4G11650 44.105 229 100 10 15 227 9 225 8.01e-50 165
MsG0880045628.01.T01 AT4G18253 39.167 240 113 6 15 227 7 240 3.23e-46 155
MsG0880045628.01.T01 AT2G28790 38.912 239 113 7 17 224 37 273 2.55e-45 154
MsG0880045628.01.T01 AT2G28790 38.912 239 113 7 17 224 12 248 3.26e-45 153
MsG0880045628.01.T01 AT1G70250 39.474 228 104 6 32 228 146 370 8.08e-43 156
MsG0880045628.01.T01 AT4G18250 38.750 240 119 6 17 230 40 277 4.05e-41 150
MsG0880045628.01.T01 AT5G24620 43.275 171 81 4 115 270 15 184 1.10e-36 132
MsG0880045628.01.T01 AT2G24810 58.974 78 28 2 150 224 116 192 5.98e-24 96.3

Find 103 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCTTGGATAGCAAATT+TGG 0.164837 8:-61948620 MsG0880045628.01.T01:CDS
TGTACTACCTATACTATAAT+TGG 0.191819 8:-61950533 MsG0880045628.01.T01:five_prime_UTR
TTTCAGTTTGAAATCTTTAA+TGG 0.204453 8:-61948686 MsG0880045628.01.T01:intron
AGTATAGGTAGTACAAAATT+TGG 0.210723 8:+61950541 None:intergenic
TACGCATAGCTATAAGATTT+TGG 0.212867 8:+61949671 None:intergenic
AGAAGAAGGAGTAGGGGATT+AGG 0.223497 8:+61950631 None:intergenic
GGTTGCAAATTCGACGATTC+TGG 0.256766 8:-61950070 MsG0880045628.01.T01:CDS
GAAGAAGGAGTAGGGGATTA+GGG 0.269919 8:+61950632 None:intergenic
CCGGTTGGTCAGGTAGATTC+TGG 0.283059 8:-61950102 MsG0880045628.01.T01:intron
TCAACCGGAGACTGTGGTTC+CGG 0.303738 8:-61950034 MsG0880045628.01.T01:CDS
ACAATATGGCCAGGAATTCT+AGG 0.311650 8:-61950192 MsG0880045628.01.T01:CDS
TTGTTCGCCTTCGGTTTATT+CGG 0.321676 8:-61949714 MsG0880045628.01.T01:CDS
ATCCTTGTCCTATGTCATAA+AGG 0.326258 8:+61948449 None:intergenic
CAACCGGAGACTGTGGTTCC+GGG 0.352374 8:-61950033 MsG0880045628.01.T01:CDS
GTAGGGGATTAGGGAGAAAT+TGG 0.356021 8:+61950641 None:intergenic
GGCCACGGAACCTGCTCAAC+CGG 0.356065 8:-61950049 MsG0880045628.01.T01:CDS
GTTGAAACTAGTGGCGGTTC+AGG 0.356585 8:-61949887 MsG0880045628.01.T01:CDS
ACAAATGTGATCACACAATA+TGG 0.373841 8:-61950206 MsG0880045628.01.T01:CDS
GTAGAGGTGGAACTCTCTTT+AGG 0.376420 8:+61950587 None:intergenic
ATAGACATGGAAGTTGAAAA+TGG 0.377749 8:+61948568 None:intergenic
AAACCGGTTGTTCCGAGGTC+TGG 0.386392 8:+61950165 None:intergenic
TATTGTTGTAGTGGCGCGTT+TGG 0.396855 8:-61949749 MsG0880045628.01.T01:CDS
AATAGCGCGTGTGGTGCCTT+TGG 0.406914 8:-61949782 MsG0880045628.01.T01:CDS
GTGGATTAGAAGAAGGAGTA+GGG 0.417664 8:+61950624 None:intergenic
CTGCAGTAGCTACTAAATCT+TGG 0.418679 8:-61948633 MsG0880045628.01.T01:CDS
TGTAGACGGTTACAATCTTC+CGG 0.423644 8:-61949915 MsG0880045628.01.T01:CDS
GAAATTAACTGCAACGGAAA+CGG 0.426268 8:-61950010 MsG0880045628.01.T01:CDS
GTGAATTCTGCTAATGTTGC+CGG 0.441903 8:+61949977 None:intergenic
TATACATACCTTTGAAAGCT+AGG 0.444402 8:+61950437 None:intergenic
CGGAAACGGCGCAACACCAC+CGG 0.452277 8:-61949996 MsG0880045628.01.T01:CDS
TATCCAACCAATTATAGTAT+AGG 0.453268 8:+61950526 None:intergenic
TTCCCCGGAACCACAGTCTC+CGG 0.457171 8:+61950030 None:intergenic
ATAGCGCGTGTGGTGCCTTT+GGG 0.460528 8:-61949781 MsG0880045628.01.T01:CDS
GCCATCGAGTTGTTCGCCTT+CGG 0.461378 8:-61949723 MsG0880045628.01.T01:CDS
TCCTTGTCCTATGTCATAAA+GGG 0.463219 8:+61948450 None:intergenic
AGACTAACATCGTAGTAATC+TGG 0.463483 8:+61949938 None:intergenic
TCATGTCAGCCCACTGGATG+TGG 0.463727 8:-61949863 MsG0880045628.01.T01:CDS
AAACCAGACCTCGGAACAAC+CGG 0.464546 8:-61950168 MsG0880045628.01.T01:intron
TCCGTTGCAGTTAATTTCCC+CGG 0.478576 8:+61950015 None:intergenic
TGAAGAGGTGGATTAGAAGA+AGG 0.482430 8:+61950617 None:intergenic
TCTCATACCCTTTATGACAT+AGG 0.484360 8:-61948457 MsG0880045628.01.T01:three_prime_UTR
GATTAGGGAGAAATTGGTGG+TGG 0.484447 8:+61950647 None:intergenic
TGGATTAGAAGAAGGAGTAG+GGG 0.484872 8:+61950625 None:intergenic
ATTTACCTTGGAGAAGAAGA+AGG 0.485184 8:+61949587 None:intergenic
CTTTGAAAGCTAGGATAAGT+AGG 0.489482 8:+61950446 None:intergenic
CGGTTACAATCTTCCGGTGA+TGG 0.491856 8:-61949909 MsG0880045628.01.T01:CDS
CGGTTGGTCAGGTAGATTCT+GGG 0.493549 8:-61950101 MsG0880045628.01.T01:intron
CTACTTATCCTAGCTTTCAA+AGG 0.495706 8:-61950445 MsG0880045628.01.T01:intron
GGTGGATTAGAAGAAGGAGT+AGG 0.495979 8:+61950623 None:intergenic
GCTTGTTCTACTGATGATCC+TGG 0.496977 8:+61948655 None:intergenic
ACATGGAAGTTGAAAATGGT+TGG 0.500978 8:+61948572 None:intergenic
GGTAGATTCTGGGCAAGAAC+CGG 0.501018 8:-61950091 MsG0880045628.01.T01:CDS
ACCACAGTCTCCGGTTGAGC+AGG 0.501097 8:+61950039 None:intergenic
TAAGTAGGAAAATGAAGAAA+CGG 0.509403 8:+61950461 None:intergenic
TATTCTTGTGGAAGCTCCTG+TGG 0.511782 8:+61948597 None:intergenic
TTTAATTTGTACTGTAGAGG+TGG 0.511893 8:+61950574 None:intergenic
GATCAAACAACATAAGTAGT+TGG 0.514391 8:-61948429 MsG0880045628.01.T01:three_prime_UTR
GATGTGGAGAGGATCTTAAC+CGG 0.515133 8:-61949847 MsG0880045628.01.T01:CDS
AGAATCGTCGAATTTGCAAC+CGG 0.526091 8:+61950072 None:intergenic
CCGTCCACTCTCAGCTCCGA+TGG 0.526529 8:+61949818 None:intergenic
TCTTTAATGGAGTCAAAGCC+AGG 0.528098 8:-61948673 MsG0880045628.01.T01:CDS
TCAGGTTCATGTCAGCCCAC+TGG 0.530267 8:-61949869 MsG0880045628.01.T01:CDS
CTACCTATACTATAATTGGT+TGG 0.532469 8:-61950529 MsG0880045628.01.T01:five_prime_UTR
TGTGATCACACAATATGGCC+AGG 0.532969 8:-61950201 MsG0880045628.01.T01:CDS
GGGGATTAGGGAGAAATTGG+TGG 0.534767 8:+61950644 None:intergenic
TTTGTCCTTCTTCTTCTCCA+AGG 0.536796 8:-61949592 MsG0880045628.01.T01:intron
TGGATAGCAAATTTGGCCAC+AGG 0.539560 8:-61948613 MsG0880045628.01.T01:CDS
GTGTGGTGCCTTTGGGACAC+CGG 0.551624 8:-61949774 MsG0880045628.01.T01:CDS
AAATTCGACGATTCTGGCCA+CGG 0.552629 8:-61950064 MsG0880045628.01.T01:CDS
AAATGGTTGGCTTATTCTTG+TGG 0.566106 8:+61948585 None:intergenic
ATTAGGGAGAAATTGGTGGT+GGG 0.566189 8:+61950648 None:intergenic
AACATTTCCGAATAAACCGA+AGG 0.568030 8:+61949707 None:intergenic
TATGCAAATGAGATGTCACT+TGG 0.568469 8:+61948483 None:intergenic
CCATCGGAGCTGAGAGTGGA+CGG 0.581824 8:-61949818 MsG0880045628.01.T01:CDS
GTGTCCATCGGAGCTGAGAG+TGG 0.585045 8:-61949822 MsG0880045628.01.T01:CDS
CTCCGGTTGAGCAGGTTCCG+TGG 0.586582 8:+61950047 None:intergenic
ACACCGGAGTATTGTTGTAG+TGG 0.587807 8:-61949758 MsG0880045628.01.T01:CDS
CCACTAGTTTCAACCATCAC+CGG 0.588717 8:+61949896 None:intergenic
TTAGGAGTGAATTGAAGAGG+TGG 0.590007 8:+61950605 None:intergenic
TCCGGGGAAATTAACTGCAA+CGG 0.590336 8:-61950016 MsG0880045628.01.T01:CDS
TCTTTAGGAGTGAATTGAAG+AGG 0.590674 8:+61950602 None:intergenic
TACGATGTTAGTCTTGTAGA+CGG 0.595413 8:-61949929 MsG0880045628.01.T01:CDS
ACATTAGCAGAATTCACTCT+AGG 0.595724 8:-61949971 MsG0880045628.01.T01:CDS
ACCGAAGGCGAACAACTCGA+TGG 0.601385 8:+61949722 None:intergenic
AACCGGAGACTGTGGTTCCG+GGG 0.604183 8:-61950032 MsG0880045628.01.T01:CDS
AAGATCCTCTCCACATCCAG+TGG 0.606360 8:+61949853 None:intergenic
TCAGCTCCGATGGACACCTC+CGG 0.607057 8:+61949828 None:intergenic
ACCTGCTCAACCGGAGACTG+TGG 0.608729 8:-61950040 MsG0880045628.01.T01:CDS
ACAATACTCCGGTGTCCCAA+AGG 0.614212 8:+61949766 None:intergenic
TCTTAACCGGAGGTGTCCAT+CGG 0.615290 8:-61949834 MsG0880045628.01.T01:CDS
TAGTACAAAATTTGGAACAG+AGG 0.618607 8:+61950549 None:intergenic
GTTCAAAACCGGTTGTTCCG+AGG 0.625163 8:+61950160 None:intergenic
CCGGTGATGGTTGAAACTAG+TGG 0.635688 8:-61949896 MsG0880045628.01.T01:CDS
AGATCCTCTCCACATCCAGT+GGG 0.647063 8:+61949854 None:intergenic
GACGCGTGTAATAGCGCGTG+TGG 0.652762 8:-61949791 MsG0880045628.01.T01:CDS
TCAGCCCACTGGATGTGGAG+AGG 0.658980 8:-61949858 MsG0880045628.01.T01:CDS
ACCCTTTATGACATAGGACA+AGG 0.663858 8:-61948451 MsG0880045628.01.T01:three_prime_UTR
ATTCTAGGAAAACCAGACCT+CGG 0.680245 8:-61950177 MsG0880045628.01.T01:CDS
AATTCTGCTAATGTTGCCGG+TGG 0.701173 8:+61949980 None:intergenic
GCGCCACTACAACAATACTC+CGG 0.703825 8:+61949755 None:intergenic
GTGGAGAGGATCTTAACCGG+AGG 0.704810 8:-61949844 MsG0880045628.01.T01:CDS
TCGGAGCTGAGAGTGGACGG+TGG 0.723814 8:-61949815 MsG0880045628.01.T01:CDS
GTGATGGTTGAAACTAGTGG+CGG 0.740161 8:-61949893 MsG0880045628.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCATATATGTATTGA+TGG + Chr8:61948679-61948698 None:intergenic 15.0%
!!! AACTTTTCACTTTTTTTTTT+AGG - Chr8:61949458-61949477 MsG0880045628.01.T01:intron 15.0%
!!! ACTTTTCACTTTTTTTTTTA+GGG - Chr8:61949459-61949478 MsG0880045628.01.T01:intron 15.0%
!!! TGAATTTTACAAAAGAAAAT+TGG - Chr8:61950027-61950046 MsG0880045628.01.T01:CDS 15.0%
!!! TTTTAAGAGTAAAAAATGAA+AGG - Chr8:61949923-61949942 MsG0880045628.01.T01:CDS 15.0%
!! ACTATCAATTAAGATACAAT+AGG + Chr8:61950218-61950237 None:intergenic 20.0%
!!! CTTTTGTAAAATTCAGAATT+TGG + Chr8:61950022-61950041 None:intergenic 20.0%
!!! GAATCAGTTAAAAGTTTTAA+TGG - Chr8:61949834-61949853 MsG0880045628.01.T01:CDS 20.0%
!!! TTTCAGTTTGAAATCTTTAA+TGG - Chr8:61950305-61950324 MsG0880045628.01.T01:intron 20.0%
! AGTATAGGTAGTACAAAATT+TGG + Chr8:61948453-61948472 None:intergenic 25.0%
! ATCAATTAAGATACAATAGG+TGG + Chr8:61950215-61950234 None:intergenic 25.0%
! CCTTTGACAAAACAAAAAAT+AGG - Chr8:61949780-61949799 MsG0880045628.01.T01:CDS 25.0%
! TAAATCTTGGATAGCAAATT+TGG - Chr8:61950371-61950390 MsG0880045628.01.T01:intron 25.0%
! TAAGTAGGAAAATGAAGAAA+CGG + Chr8:61948533-61948552 None:intergenic 25.0%
! TAGCAACAAAAATATAGACA+TGG + Chr8:61950439-61950458 None:intergenic 25.0%
! TATCCAACCAATTATAGTAT+AGG + Chr8:61948468-61948487 None:intergenic 25.0%
! TGTACTACCTATACTATAAT+TGG - Chr8:61948458-61948477 MsG0880045628.01.T01:three_prime_UTR 25.0%
!! AACTTTTCACTCTTTAATCA+AGG - Chr8:61949490-61949509 MsG0880045628.01.T01:intron 25.0%
!! ATATAACGACGATTTTTGAT+TGG + Chr8:61948643-61948662 None:intergenic 25.0%
!! GTGATGTGAAAATCTTTTAA+TGG - Chr8:61950238-61950257 MsG0880045628.01.T01:CDS 25.0%
!!! CCTATTTTTTGTTTTGTCAA+AGG + Chr8:61949783-61949802 None:intergenic 25.0%
!!! GATTTTAATTTGTACTGTAG+AGG + Chr8:61948423-61948442 None:intergenic 25.0%
!!! GTGAAAAGTTTTATTTACCT+TGG + Chr8:61949419-61949438 None:intergenic 25.0%
!!! TATTGATGATGAAATTGTTC+TGG - Chr8:61949812-61949831 MsG0880045628.01.T01:CDS 25.0%
!!! TCATTTATTGAAGCTGTTTT+TGG - Chr8:61950645-61950664 MsG0880045628.01.T01:five_prime_UTR 25.0%
ACAAATGTGATCACACAATA+TGG - Chr8:61948785-61948804 MsG0880045628.01.T01:intron 30.0%
AGAAATTGAGTGTATGTCAT+TGG - Chr8:61949986-61950005 MsG0880045628.01.T01:CDS 30.0%
ATAGACATGGAAGTTGAAAA+TGG + Chr8:61950426-61950445 None:intergenic 30.0%
CTACCTATACTATAATTGGT+TGG - Chr8:61948462-61948481 MsG0880045628.01.T01:three_prime_UTR 30.0%
CTTACAACTATCAAAATCCA+AGG - Chr8:61949682-61949701 MsG0880045628.01.T01:CDS 30.0%
GAATGTTGTGATGAAAGATT+AGG - Chr8:61949873-61949892 MsG0880045628.01.T01:CDS 30.0%
GATCAAACAACATAAGTAGT+TGG - Chr8:61950562-61950581 MsG0880045628.01.T01:five_prime_UTR 30.0%
GTTGGTTAAACAAGTTGTTA+AGG - Chr8:61949544-61949563 MsG0880045628.01.T01:intron 30.0%
TTAACCAACAACCTTTGATA+GGG + Chr8:61949533-61949552 None:intergenic 30.0%
TTTAACCAACAACCTTTGAT+AGG + Chr8:61949534-61949553 None:intergenic 30.0%
! AAGTTGTTAAGGACATCTTT+TGG - Chr8:61949555-61949574 MsG0880045628.01.T01:intron 30.0%
! TACGCATAGCTATAAGATTT+TGG + Chr8:61949323-61949342 None:intergenic 30.0%
! TAGTACAAAATTTGGAACAG+AGG + Chr8:61948445-61948464 None:intergenic 30.0%
! TATACATACCTTTGAAAGCT+AGG + Chr8:61948557-61948576 None:intergenic 30.0%
!! TTTAATTTGTACTGTAGAGG+TGG + Chr8:61948420-61948439 None:intergenic 30.0%
!!! TTCCTTTTTGAGTTCAAAAC+CGG + Chr8:61948845-61948864 None:intergenic 30.0%
AACATTTCCGAATAAACCGA+AGG + Chr8:61949287-61949306 None:intergenic 35.0%
AATTGTTACTCCTGCATGTA+TGG + Chr8:61948740-61948759 None:intergenic 35.0%
ACAACTATCAAAATCCAAGG+TGG - Chr8:61949685-61949704 MsG0880045628.01.T01:CDS 35.0%
ACAATAGGTGGAAAGAAGAA+AGG + Chr8:61950203-61950222 None:intergenic 35.0%
ACAATTATTCCCATACATGC+AGG - Chr8:61948727-61948746 MsG0880045628.01.T01:intron 35.0%
ACATGGAAGTTGAAAATGGT+TGG + Chr8:61950422-61950441 None:intergenic 35.0%
ACATTAGCAGAATTCACTCT+AGG - Chr8:61949020-61949039 MsG0880045628.01.T01:intron 35.0%
AGACTAACATCGTAGTAATC+TGG + Chr8:61949056-61949075 None:intergenic 35.0%
ATCCTTGTCCTATGTCATAA+AGG + Chr8:61950545-61950564 None:intergenic 35.0%
ATTGTTACTCCTGCATGTAT+GGG + Chr8:61948739-61948758 None:intergenic 35.0%
ATTTACCTTGGAGAAGAAGA+AGG + Chr8:61949407-61949426 None:intergenic 35.0%
CAACATCTTCAATTATGTCG+TGG + Chr8:61950265-61950284 None:intergenic 35.0%
GAAATTAACTGCAACGGAAA+CGG - Chr8:61948981-61949000 MsG0880045628.01.T01:intron 35.0%
TAACCAACAACCTTTGATAG+GGG + Chr8:61949532-61949551 None:intergenic 35.0%
TATGCAAATGAGATGTCACT+TGG + Chr8:61950511-61950530 None:intergenic 35.0%
TCCTTGTCCTATGTCATAAA+GGG + Chr8:61950544-61950563 None:intergenic 35.0%
TCTCATACCCTTTATGACAT+AGG - Chr8:61950534-61950553 MsG0880045628.01.T01:five_prime_UTR 35.0%
! CTACTTATCCTAGCTTTCAA+AGG - Chr8:61948546-61948565 MsG0880045628.01.T01:CDS 35.0%
! CTTTGAAAGCTAGGATAAGT+AGG + Chr8:61948548-61948567 None:intergenic 35.0%
! GCTATAAGATTTTGGACAAG+CGG + Chr8:61949315-61949334 None:intergenic 35.0%
! TACTTTTACTTGTACTGCTG+CGG - Chr8:61949358-61949377 MsG0880045628.01.T01:intron 35.0%
! TCTTTAGGAGTGAATTGAAG+AGG + Chr8:61948392-61948411 None:intergenic 35.0%
! TTGTAAGATCGATTTAGTGC+AGG + Chr8:61949669-61949688 None:intergenic 35.0%
!! AAATGGTTGGCTTATTCTTG+TGG + Chr8:61950409-61950428 None:intergenic 35.0%
!! GATGCAATCTTGATTTGTTG+TGG - Chr8:61949710-61949729 MsG0880045628.01.T01:CDS 35.0%
!! TACGATGTTAGTCTTGTAGA+CGG - Chr8:61949062-61949081 MsG0880045628.01.T01:intron 35.0%
!!! AACCGGTTTTGAACTCAAAA+AGG - Chr8:61948840-61948859 MsG0880045628.01.T01:intron 35.0%
ACAATATGGCCAGGAATTCT+AGG - Chr8:61948799-61948818 MsG0880045628.01.T01:intron 40.0%
ACCCTTTATGACATAGGACA+AGG - Chr8:61950540-61950559 MsG0880045628.01.T01:five_prime_UTR 40.0%
AGAATCGTCGAATTTGCAAC+CGG + Chr8:61948922-61948941 None:intergenic 40.0%
CTCAATTTCACCCCTATCAA+AGG - Chr8:61949519-61949538 MsG0880045628.01.T01:intron 40.0%
CTGCAGTAGCTACTAAATCT+TGG - Chr8:61950358-61950377 MsG0880045628.01.T01:intron 40.0%
GTGAATTCTGCTAATGTTGC+CGG + Chr8:61949017-61949036 None:intergenic 40.0%
TCTTTAATGGAGTCAAAGCC+AGG - Chr8:61950318-61950337 MsG0880045628.01.T01:intron 40.0%
TGTAGACGGTTACAATCTTC+CGG - Chr8:61949076-61949095 MsG0880045628.01.T01:intron 40.0%
TTAGGAGTGAATTGAAGAGG+TGG + Chr8:61948389-61948408 None:intergenic 40.0%
TTGTTCGCCTTCGGTTTATT+CGG - Chr8:61949277-61949296 MsG0880045628.01.T01:intron 40.0%
TTTGTCCTTCTTCTTCTCCA+AGG - Chr8:61949399-61949418 MsG0880045628.01.T01:intron 40.0%
! ATTCTAGGAAAACCAGACCT+CGG - Chr8:61948814-61948833 MsG0880045628.01.T01:intron 40.0%
! TGGATTAGAAGAAGGAGTAG+GGG + Chr8:61948369-61948388 None:intergenic 40.0%
!! GTGGATTAGAAGAAGGAGTA+GGG + Chr8:61948370-61948389 None:intergenic 40.0%
!! TGAAGAGGTGGATTAGAAGA+AGG + Chr8:61948377-61948396 None:intergenic 40.0%
!!! TCTGGTTTTCCTAGAATTCC+TGG + Chr8:61948811-61948830 None:intergenic 40.0%
AAATTCGACGATTCTGGCCA+CGG - Chr8:61948927-61948946 MsG0880045628.01.T01:intron 45.0%
AATTCTGCTAATGTTGCCGG+TGG + Chr8:61949014-61949033 None:intergenic 45.0%
AGAAGAAGGAGTAGGGGATT+AGG + Chr8:61948363-61948382 None:intergenic 45.0%
GAAGAAGGAGTAGGGGATTA+GGG + Chr8:61948362-61948381 None:intergenic 45.0%
GATGTGGAGAGGATCTTAAC+CGG - Chr8:61949144-61949163 MsG0880045628.01.T01:intron 45.0%
GCTTGTTCTACTGATGATCC+TGG + Chr8:61950339-61950358 None:intergenic 45.0%
GGTTGCAAATTCGACGATTC+TGG - Chr8:61948921-61948940 MsG0880045628.01.T01:intron 45.0%
GTAGAGGTGGAACTCTCTTT+AGG + Chr8:61948407-61948426 None:intergenic 45.0%
GTAGGGGATTAGGGAGAAAT+TGG + Chr8:61948353-61948372 None:intergenic 45.0%
GTGATGGTTGAAACTAGTGG+CGG - Chr8:61949098-61949117 MsG0880045628.01.T01:intron 45.0%
TATTCTTGTGGAAGCTCCTG+TGG + Chr8:61950397-61950416 None:intergenic 45.0%
TATTGTTGTAGTGGCGCGTT+TGG - Chr8:61949242-61949261 MsG0880045628.01.T01:intron 45.0%
TCACCCCTATCAAAGGTTGT+TGG - Chr8:61949526-61949545 MsG0880045628.01.T01:intron 45.0%
TCCGGGGAAATTAACTGCAA+CGG - Chr8:61948975-61948994 MsG0880045628.01.T01:intron 45.0%
TCCGTTGCAGTTAATTTCCC+CGG + Chr8:61948979-61948998 None:intergenic 45.0%
TGGATAGCAAATTTGGCCAC+AGG - Chr8:61950378-61950397 MsG0880045628.01.T01:intron 45.0%
TGTGATCACACAATATGGCC+AGG - Chr8:61948790-61948809 MsG0880045628.01.T01:intron 45.0%
! CCACTAGTTTCAACCATCAC+CGG + Chr8:61949098-61949117 None:intergenic 45.0%
!! ACACCGGAGTATTGTTGTAG+TGG - Chr8:61949233-61949252 MsG0880045628.01.T01:intron 45.0%
!! GGTGGATTAGAAGAAGGAGT+AGG + Chr8:61948371-61948390 None:intergenic 45.0%
AAACCAGACCTCGGAACAAC+CGG - Chr8:61948823-61948842 MsG0880045628.01.T01:intron 50.0%
AAGATCCTCTCCACATCCAG+TGG + Chr8:61949141-61949160 None:intergenic 50.0%
ACAATACTCCGGTGTCCCAA+AGG + Chr8:61949228-61949247 None:intergenic 50.0%
AGATCCTCTCCACATCCAGT+GGG + Chr8:61949140-61949159 None:intergenic 50.0%
CCAGAATCTACCTGACCAAC+CGG + Chr8:61948892-61948911 None:intergenic 50.0%
CGGTTACAATCTTCCGGTGA+TGG - Chr8:61949082-61949101 MsG0880045628.01.T01:intron 50.0%
GCGCCACTACAACAATACTC+CGG + Chr8:61949239-61949258 None:intergenic 50.0%
GGGGATTAGGGAGAAATTGG+TGG + Chr8:61948350-61948369 None:intergenic 50.0%
GGTAGATTCTGGGCAAGAAC+CGG - Chr8:61948900-61948919 MsG0880045628.01.T01:intron 50.0%
GTTCAAAACCGGTTGTTCCG+AGG + Chr8:61948834-61948853 None:intergenic 50.0%
GTTGAAACTAGTGGCGGTTC+AGG - Chr8:61949104-61949123 MsG0880045628.01.T01:intron 50.0%
! CAAGATTGCATCGACCACCT+TGG + Chr8:61949702-61949721 None:intergenic 50.0%
! CCGGTGATGGTTGAAACTAG+TGG - Chr8:61949095-61949114 MsG0880045628.01.T01:intron 50.0%
! CGGTTGGTCAGGTAGATTCT+GGG - Chr8:61948890-61948909 MsG0880045628.01.T01:intron 50.0%
!! TCTTAACCGGAGGTGTCCAT+CGG - Chr8:61949157-61949176 MsG0880045628.01.T01:intron 50.0%
AAACCGGTTGTTCCGAGGTC+TGG + Chr8:61948829-61948848 None:intergenic 55.0%
AATAGCGCGTGTGGTGCCTT+TGG - Chr8:61949209-61949228 MsG0880045628.01.T01:intron 55.0%
AATCTACCTGACCAACCGGC+TGG + Chr8:61948888-61948907 None:intergenic 55.0%
ACCGAAGGCGAACAACTCGA+TGG + Chr8:61949272-61949291 None:intergenic 55.0%
ATAGCGCGTGTGGTGCCTTT+GGG - Chr8:61949210-61949229 MsG0880045628.01.T01:intron 55.0%
CAAACCTTCCAAGCACCAGC+CGG - Chr8:61948870-61948889 MsG0880045628.01.T01:intron 55.0%
GTGGAGAGGATCTTAACCGG+AGG - Chr8:61949147-61949166 MsG0880045628.01.T01:intron 55.0%
TCAACCGGAGACTGTGGTTC+CGG - Chr8:61948957-61948976 MsG0880045628.01.T01:intron 55.0%
TCAGGTTCATGTCAGCCCAC+TGG - Chr8:61949122-61949141 MsG0880045628.01.T01:intron 55.0%
TCATGTCAGCCCACTGGATG+TGG - Chr8:61949128-61949147 MsG0880045628.01.T01:intron 55.0%
! CCGGTTGGTCAGGTAGATTC+TGG - Chr8:61948889-61948908 MsG0880045628.01.T01:intron 55.0%
! GCCATCGAGTTGTTCGCCTT+CGG - Chr8:61949268-61949287 MsG0880045628.01.T01:intron 55.0%
AACCGGAGACTGTGGTTCCG+GGG - Chr8:61948959-61948978 MsG0880045628.01.T01:intron 60.0%
ACCACAGTCTCCGGTTGAGC+AGG + Chr8:61948955-61948974 None:intergenic 60.0%
ACCTGCTCAACCGGAGACTG+TGG - Chr8:61948951-61948970 MsG0880045628.01.T01:intron 60.0%
CAACCGGAGACTGTGGTTCC+GGG - Chr8:61948958-61948977 MsG0880045628.01.T01:intron 60.0%
CCATCGGAGCTGAGAGTGGA+CGG - Chr8:61949173-61949192 MsG0880045628.01.T01:intron 60.0%
GACGCGTGTAATAGCGCGTG+TGG - Chr8:61949200-61949219 MsG0880045628.01.T01:intron 60.0%
GTGTCCATCGGAGCTGAGAG+TGG - Chr8:61949169-61949188 MsG0880045628.01.T01:intron 60.0%
TCAGCCCACTGGATGTGGAG+AGG - Chr8:61949133-61949152 MsG0880045628.01.T01:intron 60.0%
TCAGCTCCGATGGACACCTC+CGG + Chr8:61949166-61949185 None:intergenic 60.0%
TTCCCCGGAACCACAGTCTC+CGG + Chr8:61948964-61948983 None:intergenic 60.0%
!! GTGTGGTGCCTTTGGGACAC+CGG - Chr8:61949217-61949236 MsG0880045628.01.T01:intron 60.0%
CCAACCGGCTGGTGCTTGGA+AGG + Chr8:61948877-61948896 None:intergenic 65.0%
CCGTCCACTCTCAGCTCCGA+TGG + Chr8:61949176-61949195 None:intergenic 65.0%
CCTTCCAAGCACCAGCCGGT+TGG - Chr8:61948874-61948893 MsG0880045628.01.T01:intron 65.0%
CGGAAACGGCGCAACACCAC+CGG - Chr8:61948995-61949014 MsG0880045628.01.T01:intron 65.0%
CTCCGGTTGAGCAGGTTCCG+TGG + Chr8:61948947-61948966 None:intergenic 65.0%
CTGACCAACCGGCTGGTGCT+TGG + Chr8:61948881-61948900 None:intergenic 65.0%
GGCCACGGAACCTGCTCAAC+CGG - Chr8:61948942-61948961 MsG0880045628.01.T01:intron 65.0%
TCGGAGCTGAGAGTGGACGG+TGG - Chr8:61949176-61949195 MsG0880045628.01.T01:intron 65.0%
! CAAGCACCAGCCGGTTGGTC+AGG - Chr8:61948879-61948898 MsG0880045628.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 61948346 61950667 61948346 ID=MsG0880045628.01;Name=MsG0880045628.01
Chr8 mRNA 61948346 61950667 61948346 ID=MsG0880045628.01.T01;Parent=MsG0880045628.01;Name=MsG0880045628.01.T01;_AED=0.24;_eAED=0.24;_QI=149|0.66|0.5|1|1|1|4|185|286
Chr8 exon 61948346 61948702 61948346 ID=MsG0880045628.01.T01:exon:12885;Parent=MsG0880045628.01.T01
Chr8 exon 61949593 61950112 61949593 ID=MsG0880045628.01.T01:exon:12884;Parent=MsG0880045628.01.T01
Chr8 exon 61950169 61950264 61950169 ID=MsG0880045628.01.T01:exon:12883;Parent=MsG0880045628.01.T01
Chr8 exon 61950446 61950667 61950446 ID=MsG0880045628.01.T01:exon:12882;Parent=MsG0880045628.01.T01
Chr8 five_prime_UTR 61950519 61950667 61950519 ID=MsG0880045628.01.T01:five_prime_utr;Parent=MsG0880045628.01.T01
Chr8 CDS 61950446 61950518 61950446 ID=MsG0880045628.01.T01:cds;Parent=MsG0880045628.01.T01
Chr8 CDS 61950169 61950264 61950169 ID=MsG0880045628.01.T01:cds;Parent=MsG0880045628.01.T01
Chr8 CDS 61949593 61950112 61949593 ID=MsG0880045628.01.T01:cds;Parent=MsG0880045628.01.T01
Chr8 CDS 61948531 61948702 61948531 ID=MsG0880045628.01.T01:cds;Parent=MsG0880045628.01.T01
Chr8 three_prime_UTR 61948346 61948530 61948346 ID=MsG0880045628.01.T01:three_prime_utr;Parent=MsG0880045628.01.T01
Gene Sequence

>MsG0880045628.01.T01

ATGTCTATGTTCTCATATCACAAACATTCTTCTAACCGTTTCTTCATTTTCCTACTTATCCTAGCTTTCAAAGGAGTAACAATTTCAGCAACAACATTCACGTTCGTGAACAAATGTGATCACACAATATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGACGATTCTGGCCACGGAACCTGCTCAACCGGAGACTGTGGTTCCGGGGAAATTAACTGCAACGGAAACGGCGCAACACCACCGGCAACATTAGCAGAATTCACTCTAGGAAATAGTTCGCCAGATTACTACGATGTTAGTCTTGTAGACGGTTACAATCTTCCGGTGATGGTTGAAACTAGTGGCGGTTCAGGTTCATGTCAGCCCACTGGATGTGGAGAGGATCTTAACCGGAGGTGTCCATCGGAGCTGAGAGTGGACGGTGGTGACGCGTGTAATAGCGCGTGTGGTGCCTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTGGTTCGCCATCGAGTTGTTCGCCTTCGGTTTATTCGGAAATGTTTAAATCCGCTTGTCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGTACTTTTACTTGTACTGCTGCGGATGATTATACTATCACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAATCTTTAATGGAGTCAAAGCCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAATCTTGGATAGCAAATTTGGCCACAGGAGCTTCCACAAGAATAAGCCAACCATTTTCAACTTCCATGTCTATATTTTTGTTGCTATCACTTTCATATTTTCATATTTAG

Protein sequence

>MsG0880045628.01.T01

MSMFSYHKHSSNRFFIFLLILAFKGVTISATTFTFVNKCDHTIWPGILGKPDLGTTGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCQPTGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAYDDATSTFTCTAADDYTITFCPSSSPSLKSLMESKPGSSVEQAAVATKSWIANLATGASTRISQPFSTSMSIFLLLSLSYFHI*