AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015710.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015710.01.T01 MTR_3g075110 96.266 482 17 1 1 482 1 481 0.0 968
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015710.01.T01 AT5G63290 59.016 488 174 6 1 468 1 482 0.0 604

Find 114 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACAAGGCACAAAATT+TGG 0.144991 3:+74039597 MsG0380015710.01.T01:CDS
GAGACATTGAAGATGAAATT+TGG 0.164347 3:+74039249 MsG0380015710.01.T01:CDS
TCTGGGAGTTCAAGCGTTTC+AGG 0.165044 3:+74039371 MsG0380015710.01.T01:CDS
CATGTACTCATTCACCTTCC+TGG 0.233439 3:-74040183 None:intergenic
CGACATCAACAATTCTCTTT+TGG 0.234544 3:+74040451 MsG0380015710.01.T01:CDS
GATTTCATAATGGTTATAAT+TGG 0.235080 3:-74040039 None:intergenic
CTATTAACTCATTTGATAAA+AGG 0.246147 3:-74040532 None:intergenic
GAGTTAATAGCCCTTGCTTT+TGG 0.270052 3:+74040545 MsG0380015710.01.T01:CDS
ATTAGGCGGGTTGATGGTTT+TGG 0.273462 3:-74038889 None:intergenic
CATGAAATTCGTGGAAAATC+TGG 0.286286 3:+74040202 MsG0380015710.01.T01:CDS
AAGTATGGTTGGAACGGTTT+TGG 0.291180 3:+74039227 MsG0380015710.01.T01:CDS
AGACATTGAAGATGAAATTT+GGG 0.331218 3:+74039250 MsG0380015710.01.T01:CDS
CAGCTCTCTGGTTCTCTCTC+TGG 0.344115 3:+74040352 MsG0380015710.01.T01:CDS
AAATGTGGGAGGAAAGTTTA+AGG 0.354228 3:+74039526 MsG0380015710.01.T01:CDS
TACAAGCCTTTCTATGCCTT+TGG 0.354998 3:+74040116 MsG0380015710.01.T01:CDS
GGGAGTGAATAGAGTTTCTC+TGG 0.355835 3:+74039353 MsG0380015710.01.T01:CDS
TTCGTGGAAAATCTGGAAAA+TGG 0.365028 3:+74040209 MsG0380015710.01.T01:CDS
TTTGATAAAAGGAAACCATT+TGG 0.367470 3:-74040521 None:intergenic
GAGAGCTGCCAAATGATTCT+TGG 0.367558 3:-74040337 None:intergenic
GTCCCTGGTTCCTCCAAGTA+TGG 0.370338 3:+74039212 MsG0380015710.01.T01:CDS
TGGAGGTGGGACGCCGTCCC+TGG 0.373141 3:+74039197 MsG0380015710.01.T01:CDS
TTTGTTATTAGGCGGGTTGA+TGG 0.377434 3:-74038895 None:intergenic
GTAGACACAACTTTACCTAT+TGG 0.377880 3:+74040090 MsG0380015710.01.T01:CDS
CCTTTCTATGCCTTTGGCCT+CGG 0.379342 3:+74040122 MsG0380015710.01.T01:CDS
AAAAGTGTGGGGTTGAGAAT+TGG 0.383894 3:+74039463 MsG0380015710.01.T01:CDS
TTGGGGTTATTGACTCTTGG+AGG 0.401602 3:+74040564 MsG0380015710.01.T01:CDS
ATGTACTCATTCACCTTCCT+GGG 0.403580 3:-74040182 None:intergenic
AGAAGTTGTTGAAGAGTTGT+GGG 0.410136 3:+74039394 MsG0380015710.01.T01:CDS
AGTAGCTGCTGATTTCATAA+TGG 0.410732 3:-74040049 None:intergenic
TGCTGAAATTTCGATGGAAA+TGG 0.412741 3:+74039284 MsG0380015710.01.T01:CDS
TACGTTTGATTGTAAGAAGA+TGG 0.413518 3:+74039314 MsG0380015710.01.T01:CDS
TTGTGGGAGGGCACATGGTT+TGG 0.414910 3:+74039410 MsG0380015710.01.T01:CDS
AAGCGTTACCAAGAATCATT+TGG 0.417084 3:+74040329 MsG0380015710.01.T01:CDS
TCTGGTTCTCTCTCTGGTTG+AGG 0.422048 3:+74040358 MsG0380015710.01.T01:CDS
CTGAAGAAGGGGTGATGGTT+GGG 0.425240 3:-74038975 None:intergenic
TGGATCACTTAGCCTCATAT+AGG 0.428653 3:-74040501 None:intergenic
GAGAAGTTGTTGAAGAGTTG+TGG 0.438707 3:+74039393 MsG0380015710.01.T01:CDS
GAAAGGCTTGTACTTCCAAT+AGG 0.443597 3:-74040105 None:intergenic
AAAACCGTTCCAACCATACT+TGG 0.446657 3:-74039225 None:intergenic
AGAATCATTTGGCAGCTCTC+TGG 0.455230 3:+74040340 MsG0380015710.01.T01:CDS
GATGGAAGAGATGATGTTGT+TGG 0.466524 3:+74039332 MsG0380015710.01.T01:CDS
GAGGGCACATGGTTTGGATG+AGG 0.485338 3:+74039416 MsG0380015710.01.T01:CDS
AAAAGTGTTTGTTATTAGGC+GGG 0.488015 3:-74038902 None:intergenic
AGGTGAATGTAAGCTGAAGA+AGG 0.488519 3:-74038988 None:intergenic
GCTGAAGAAGGGGTGATGGT+TGG 0.488753 3:-74038976 None:intergenic
TGGGGTTATTGACTCTTGGA+GGG 0.489544 3:+74040565 MsG0380015710.01.T01:CDS
GCTTCATTGCCTCATCAGAC+TGG 0.495628 3:+74039501 MsG0380015710.01.T01:CDS
CAACCATACTTGGAGGAACC+AGG 0.499090 3:-74039215 None:intergenic
CTGGTTCCTCCAAGTATGGT+TGG 0.504709 3:+74039216 MsG0380015710.01.T01:CDS
ACATGTCCACTCTCAACATA+AGG 0.504850 3:-74040389 None:intergenic
TCCTCCAAGTATGGTTGGAA+CGG 0.506169 3:+74039221 MsG0380015710.01.T01:CDS
GACTTCCCCATCGTCGCTCT+CGG 0.508943 3:+74039042 MsG0380015710.01.T01:CDS
ATGGAAGAGATGATGTTGTT+GGG 0.509834 3:+74039333 MsG0380015710.01.T01:CDS
GCGCAGCCGAGAGCGACGAT+GGG 0.516001 3:-74039048 None:intergenic
AAAAGAGAGTGGCCTATATG+AGG 0.521359 3:+74040489 MsG0380015710.01.T01:CDS
AAGAGTTGTGGGAGGGCACA+TGG 0.523910 3:+74039405 MsG0380015710.01.T01:CDS
AGCGCAGCCGAGAGCGACGA+TGG 0.527821 3:-74039049 None:intergenic
TGGCTCTGCAGAGAAATCAA+TGG 0.537726 3:+74039117 MsG0380015710.01.T01:CDS
GTGTCATAAACTACATTCAA+TGG 0.538852 3:+74039097 MsG0380015710.01.T01:CDS
GGTGAATGTAAGCTGAAGAA+GGG 0.540772 3:-74038987 None:intergenic
GTCAATAACCCCAAAAGCAA+GGG 0.541226 3:-74040555 None:intergenic
TAATAGCAAGGACAAAGCAT+TGG 0.546969 3:+74040262 MsG0380015710.01.T01:CDS
TAGACCTCTTGCTGTTCTCA+AGG 0.547538 3:-74040300 None:intergenic
AAGTTTAAGGCTCGCCATTG+AGG 0.549781 3:+74039539 MsG0380015710.01.T01:CDS
ATGAGTTGGCTGTGCCTCAA+TGG 0.550891 3:-74039553 None:intergenic
CCGAGGCCAAAGGCATAGAA+AGG 0.554611 3:-74040122 None:intergenic
TGGCAGCGTTTACGACAGAA+AGG 0.557441 3:-74039012 None:intergenic
TATAAACCTTATGTTGAGAG+TGG 0.557941 3:+74040383 MsG0380015710.01.T01:CDS
ATGAGGCTAAGTGATCCAAA+TGG 0.560677 3:+74040506 MsG0380015710.01.T01:CDS
GTAGCTTCTTGGAGTGCAGA+AGG 0.561374 3:-74040593 None:intergenic
ACCGTTCCAACCATACTTGG+AGG 0.563000 3:-74039222 None:intergenic
TTCTTACAATCAAACGTACC+CGG 0.565207 3:-74039309 None:intergenic
AGTCAATAACCCCAAAAGCA+AGG 0.565995 3:-74040556 None:intergenic
TGCAAAGACGCCGCTTCAGA+CGG 0.568649 3:+74039167 MsG0380015710.01.T01:CDS
AGTTGTTGAAGAGTTGTGGG+AGG 0.572758 3:+74039397 MsG0380015710.01.T01:CDS
AACAAGGCACAAAATTTGGA+AGG 0.574125 3:+74039601 MsG0380015710.01.T01:CDS
GAAGGCAATGGAAATTCCCC+TGG 0.579543 3:-74039963 None:intergenic
AATTTCGATGGAAATGGACC+CGG 0.583112 3:+74039290 MsG0380015710.01.T01:CDS
CGCAGCCGAGAGCGACGATG+GGG 0.583563 3:-74039047 None:intergenic
CTCATCAGACTGGTGAAATG+TGG 0.586079 3:+74039511 MsG0380015710.01.T01:CDS
TCATAAACAGAAACATGAGT+TGG 0.592813 3:-74039567 None:intergenic
GAATGAGTACATGAAATTCG+TGG 0.596236 3:+74040193 MsG0380015710.01.T01:CDS
ACTAGTAGAGCCGAGGCCAA+AGG 0.596278 3:-74040132 None:intergenic
TCAGCGGATTGTGTCTCAGA+AGG 0.596735 3:-74039981 None:intergenic
CTGTCCTTGAGAACAGCAAG+AGG 0.597347 3:+74040296 MsG0380015710.01.T01:CDS
ATCAGCAGCTACTGTAAGAG+TGG 0.597915 3:+74040059 MsG0380015710.01.T01:CDS
ATTTCGATGGAAATGGACCC+GGG 0.599512 3:+74039291 MsG0380015710.01.T01:CDS
GTAAGCTGAAGAAGGGGTGA+TGG 0.604094 3:-74038980 None:intergenic
GATTGTGTCTCAGAAGGCAA+TGG 0.604210 3:-74039975 None:intergenic
GGAGTGAATAGAGTTTCTCT+GGG 0.605409 3:+74039354 MsG0380015710.01.T01:CDS
CACATTTCACCAGTCTGATG+AGG 0.607000 3:-74039510 None:intergenic
AATGTTAACAGGTATTCACC+AGG 0.607528 3:+74039945 MsG0380015710.01.T01:intron
TGAAAGTGCTGAAATTTCGA+TGG 0.611357 3:+74039278 MsG0380015710.01.T01:CDS
TGGTTTGGATGAGGTTCATG+AGG 0.613397 3:+74039425 MsG0380015710.01.T01:CDS
GTTGTTGAAGAGTTGTGGGA+GGG 0.619959 3:+74039398 MsG0380015710.01.T01:CDS
TCTTACAATCAAACGTACCC+GGG 0.621772 3:-74039308 None:intergenic
GGCAGCGTTTACGACAGAAA+GGG 0.622614 3:-74039011 None:intergenic
ATACTTGGAGGAACCAGGGA+CGG 0.624368 3:-74039210 None:intergenic
TATGATCTGCAAATTGAACA+AGG 0.624447 3:+74039585 MsG0380015710.01.T01:CDS
TGATGACAACATTAATAGCA+AGG 0.635250 3:+74040250 MsG0380015710.01.T01:CDS
TGAATGTAGTTTATGACACG+CGG 0.644338 3:-74039093 None:intergenic
GTGAATGTAAGCTGAAGAAG+GGG 0.649743 3:-74038986 None:intergenic
TCATCAGACTGGTGAAATGT+GGG 0.649858 3:+74039512 MsG0380015710.01.T01:CDS
AACCATACTTGGAGGAACCA+GGG 0.649992 3:-74039214 None:intergenic
AGCGTTTACGACAGAAAGGG+AGG 0.660387 3:-74039008 None:intergenic
CGATGGGGAAGTCACAGTAG+TGG 0.663567 3:-74039032 None:intergenic
CAATAAAACTAGTAGAGCCG+AGG 0.664303 3:-74040139 None:intergenic
TGTTAACAGGTATTCACCAG+GGG 0.672471 3:+74039947 MsG0380015710.01.T01:intron
ATGTTAACAGGTATTCACCA+GGG 0.678250 3:+74039946 MsG0380015710.01.T01:intron
TCAGACTGGTGAAATGTGGG+AGG 0.678428 3:+74039515 MsG0380015710.01.T01:CDS
GACATTGAAGATGAAATTTG+GGG 0.678951 3:+74039251 MsG0380015710.01.T01:CDS
TTATGTTGAGAGTGGACATG+TGG 0.679713 3:+74040391 MsG0380015710.01.T01:CDS
GAATGTAGTTTATGACACGC+GGG 0.684399 3:-74039092 None:intergenic
AACTGACTTAGAAAAGAGAG+TGG 0.701765 3:+74040478 MsG0380015710.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGGTTTAATTTTTA+AGG + Chr3:74039881-74039900 MsG0380015710.01.T01:intron 10.0%
!! AAGTAAATACAAATAATAAG+TGG - Chr3:74039786-74039805 None:intergenic 15.0%
!! ATTGATATAGTTAAAAAGTG+TGG + Chr3:74039450-74039469 MsG0380015710.01.T01:CDS 20.0%
!! CTATTAACTCATTTGATAAA+AGG - Chr3:74040535-74040554 None:intergenic 20.0%
!! GATTTCATAATGGTTATAAT+TGG - Chr3:74040042-74040061 None:intergenic 20.0%
!! TAATAAGTAATATTCCTAAC+AGG + Chr3:74039723-74039742 MsG0380015710.01.T01:intron 20.0%
!!! TTATAATGATGATGATGATT+TGG + Chr3:74039908-74039927 MsG0380015710.01.T01:intron 20.0%
!!! TTGAAAAAGTGTTTGTTATT+AGG - Chr3:74038909-74038928 None:intergenic 20.0%
!!! TTGATATAGTTAAAAAGTGT+GGG + Chr3:74039451-74039470 MsG0380015710.01.T01:CDS 20.0%
! AGACATTGAAGATGAAATTT+GGG + Chr3:74039250-74039269 MsG0380015710.01.T01:CDS 25.0%
! TGTAACTTTATCGATGAAAT+TGG + Chr3:74039828-74039847 MsG0380015710.01.T01:intron 25.0%
! TTTGATAAAAGGAAACCATT+TGG - Chr3:74040524-74040543 None:intergenic 25.0%
!! TGATATAGTTAAAAAGTGTG+GGG + Chr3:74039452-74039471 MsG0380015710.01.T01:CDS 25.0%
!!! AAAAAGTGTTTGTTATTAGG+CGG - Chr3:74038906-74038925 None:intergenic 25.0%
!!! TAGCAGCATTGATAATTTTT+TGG + Chr3:74039867-74039886 MsG0380015710.01.T01:intron 25.0%
AACTTTATCGATGAAATTGG+TGG + Chr3:74039831-74039850 MsG0380015710.01.T01:intron 30.0%
ATTGAACAAGGCACAAAATT+TGG + Chr3:74039597-74039616 MsG0380015710.01.T01:CDS 30.0%
ATTTACTCGAGTGACAAAAT+AGG - Chr3:74039698-74039717 None:intergenic 30.0%
GACATTGAAGATGAAATTTG+GGG + Chr3:74039251-74039270 MsG0380015710.01.T01:CDS 30.0%
GAGACATTGAAGATGAAATT+TGG + Chr3:74039249-74039268 MsG0380015710.01.T01:CDS 30.0%
GAGTGACAAAATAGGAAAAA+GGG - Chr3:74039690-74039709 None:intergenic 30.0%
GTGTCATAAACTACATTCAA+TGG + Chr3:74039097-74039116 MsG0380015710.01.T01:CDS 30.0%
TACGTTTGATTGTAAGAAGA+TGG + Chr3:74039314-74039333 MsG0380015710.01.T01:CDS 30.0%
TAGTCGCTAGTGTAAAATAT+AGG - Chr3:74039639-74039658 None:intergenic 30.0%
TATAAACCTTATGTTGAGAG+TGG + Chr3:74040383-74040402 MsG0380015710.01.T01:CDS 30.0%
TATGATCTGCAAATTGAACA+AGG + Chr3:74039585-74039604 MsG0380015710.01.T01:CDS 30.0%
TATTTACTTAAGCGACAAGA+CGG + Chr3:74039797-74039816 MsG0380015710.01.T01:intron 30.0%
TCATAAACAGAAACATGAGT+TGG - Chr3:74039570-74039589 None:intergenic 30.0%
TGATGACAACATTAATAGCA+AGG + Chr3:74040250-74040269 MsG0380015710.01.T01:CDS 30.0%
! ATTTTTATACGATGGCTTCA+AGG + Chr3:74040003-74040022 MsG0380015710.01.T01:CDS 30.0%
!! AAAAGTGTTTGTTATTAGGC+GGG - Chr3:74038905-74038924 None:intergenic 30.0%
AAAATTTGGAAGGCTGTAAG+TGG + Chr3:74039611-74039630 MsG0380015710.01.T01:intron 35.0%
AAATGTGGGAGGAAAGTTTA+AGG + Chr3:74039526-74039545 MsG0380015710.01.T01:CDS 35.0%
AACAAGGCACAAAATTTGGA+AGG + Chr3:74039601-74039620 MsG0380015710.01.T01:CDS 35.0%
AAGCGTTACCAAGAATCATT+TGG + Chr3:74040329-74040348 MsG0380015710.01.T01:CDS 35.0%
AATGTTAACAGGTATTCACC+AGG + Chr3:74039945-74039964 MsG0380015710.01.T01:intron 35.0%
AGAAGTTGTTGAAGAGTTGT+GGG + Chr3:74039394-74039413 MsG0380015710.01.T01:CDS 35.0%
AGCCATCGTATAAAAATCAG+CGG - Chr3:74040000-74040019 None:intergenic 35.0%
ATGGAAGAGATGATGTTGTT+GGG + Chr3:74039333-74039352 MsG0380015710.01.T01:CDS 35.0%
ATGTTAACAGGTATTCACCA+GGG + Chr3:74039946-74039965 MsG0380015710.01.T01:intron 35.0%
CATGAAATTCGTGGAAAATC+TGG + Chr3:74040202-74040221 MsG0380015710.01.T01:CDS 35.0%
CGAGTGACAAAATAGGAAAA+AGG - Chr3:74039691-74039710 None:intergenic 35.0%
CTGAAGGTGAAAATGTTAAC+AGG + Chr3:74039934-74039953 MsG0380015710.01.T01:intron 35.0%
GAATGAGTACATGAAATTCG+TGG + Chr3:74040193-74040212 MsG0380015710.01.T01:CDS 35.0%
GTAGACACAACTTTACCTAT+TGG + Chr3:74040090-74040109 MsG0380015710.01.T01:CDS 35.0%
TAATAGCAAGGACAAAGCAT+TGG + Chr3:74040262-74040281 MsG0380015710.01.T01:CDS 35.0%
TGAATGTAGTTTATGACACG+CGG - Chr3:74039096-74039115 None:intergenic 35.0%
TGCTGAAATTTCGATGGAAA+TGG + Chr3:74039284-74039303 MsG0380015710.01.T01:CDS 35.0%
TTCGTGGAAAATCTGGAAAA+TGG + Chr3:74040209-74040228 MsG0380015710.01.T01:CDS 35.0%
TTCTTACAATCAAACGTACC+CGG - Chr3:74039312-74039331 None:intergenic 35.0%
! AACTGACTTAGAAAAGAGAG+TGG + Chr3:74040478-74040497 MsG0380015710.01.T01:CDS 35.0%
! CGACATCAACAATTCTCTTT+TGG + Chr3:74040451-74040470 MsG0380015710.01.T01:CDS 35.0%
!! AGTAGCTGCTGATTTCATAA+TGG - Chr3:74040052-74040071 None:intergenic 35.0%
!! AGTTAATAGCCCTTGCTTTT+GGG + Chr3:74040546-74040565 MsG0380015710.01.T01:CDS 35.0%
!! TGAAAGTGCTGAAATTTCGA+TGG + Chr3:74039278-74039297 MsG0380015710.01.T01:CDS 35.0%
!!! ATCCGCTGATTTTTATACGA+TGG + Chr3:74039995-74040014 MsG0380015710.01.T01:CDS 35.0%
!!! CTAGTTTTATTGGTGGTTTG+AGG + Chr3:74040150-74040169 MsG0380015710.01.T01:CDS 35.0%
AAAACCGTTCCAACCATACT+TGG - Chr3:74039228-74039247 None:intergenic 40.0%
AAAAGAGAGTGGCCTATATG+AGG + Chr3:74040489-74040508 MsG0380015710.01.T01:CDS 40.0%
AATTTCGATGGAAATGGACC+CGG + Chr3:74039290-74039309 MsG0380015710.01.T01:CDS 40.0%
ACATGTCCACTCTCAACATA+AGG - Chr3:74040392-74040411 None:intergenic 40.0%
AGGTGAATGTAAGCTGAAGA+AGG - Chr3:74038991-74039010 None:intergenic 40.0%
AGTCAATAACCCCAAAAGCA+AGG - Chr3:74040559-74040578 None:intergenic 40.0%
ATGAGGCTAAGTGATCCAAA+TGG + Chr3:74040506-74040525 MsG0380015710.01.T01:CDS 40.0%
ATGTACTCATTCACCTTCCT+GGG - Chr3:74040185-74040204 None:intergenic 40.0%
CAATAAAACTAGTAGAGCCG+AGG - Chr3:74040142-74040161 None:intergenic 40.0%
CGAATGTGACAAAACGCTAA+AGG + Chr3:74039747-74039766 MsG0380015710.01.T01:intron 40.0%
GAAAGGCTTGTACTTCCAAT+AGG - Chr3:74040108-74040127 None:intergenic 40.0%
GAATGTAGTTTATGACACGC+GGG - Chr3:74039095-74039114 None:intergenic 40.0%
GAGAAGTTGTTGAAGAGTTG+TGG + Chr3:74039393-74039412 MsG0380015710.01.T01:CDS 40.0%
GATGGAAGAGATGATGTTGT+TGG + Chr3:74039332-74039351 MsG0380015710.01.T01:CDS 40.0%
GGAGTGAATAGAGTTTCTCT+GGG + Chr3:74039354-74039373 MsG0380015710.01.T01:CDS 40.0%
GGTGAATGTAAGCTGAAGAA+GGG - Chr3:74038990-74039009 None:intergenic 40.0%
GTCAATAACCCCAAAAGCAA+GGG - Chr3:74040558-74040577 None:intergenic 40.0%
GTGAATGTAAGCTGAAGAAG+GGG - Chr3:74038989-74039008 None:intergenic 40.0%
TACAAGCCTTTCTATGCCTT+TGG + Chr3:74040116-74040135 MsG0380015710.01.T01:CDS 40.0%
TCATCAGACTGGTGAAATGT+GGG + Chr3:74039512-74039531 MsG0380015710.01.T01:CDS 40.0%
TCTTACAATCAAACGTACCC+GGG - Chr3:74039311-74039330 None:intergenic 40.0%
TGGATCACTTAGCCTCATAT+AGG - Chr3:74040504-74040523 None:intergenic 40.0%
TGTTAACAGGTATTCACCAG+GGG + Chr3:74039947-74039966 MsG0380015710.01.T01:intron 40.0%
TTATGTTGAGAGTGGACATG+TGG + Chr3:74040391-74040410 MsG0380015710.01.T01:CDS 40.0%
TTTGTCACATTCGTCCTGTT+AGG - Chr3:74039740-74039759 None:intergenic 40.0%
! AAAAGTGTGGGGTTGAGAAT+TGG + Chr3:74039463-74039482 MsG0380015710.01.T01:CDS 40.0%
! AAGTATGGTTGGAACGGTTT+TGG + Chr3:74039227-74039246 MsG0380015710.01.T01:CDS 40.0%
! AGGAAAAAGGGTGTGAGTTT+AGG - Chr3:74039678-74039697 None:intergenic 40.0%
! GAGTTAATAGCCCTTGCTTT+TGG + Chr3:74040545-74040564 MsG0380015710.01.T01:CDS 40.0%
! GATGATGATTTGGAAGCTGA+AGG + Chr3:74039918-74039937 MsG0380015710.01.T01:intron 40.0%
!! GTTAATAGCCCTTGCTTTTG+GGG + Chr3:74040547-74040566 MsG0380015710.01.T01:CDS 40.0%
!! TTTGTTATTAGGCGGGTTGA+TGG - Chr3:74038898-74038917 None:intergenic 40.0%
!!! CTCGGCTCTACTAGTTTTAT+TGG + Chr3:74040140-74040159 MsG0380015710.01.T01:CDS 40.0%
!!! CTTTTGGGGTTATTGACTCT+TGG + Chr3:74040561-74040580 MsG0380015710.01.T01:CDS 40.0%
!!! GGCTCTACTAGTTTTATTGG+TGG + Chr3:74040143-74040162 MsG0380015710.01.T01:CDS 40.0%
AACCATACTTGGAGGAACCA+GGG - Chr3:74039217-74039236 None:intergenic 45.0%
AGAATCATTTGGCAGCTCTC+TGG + Chr3:74040340-74040359 MsG0380015710.01.T01:CDS 45.0%
AGTTGTTGAAGAGTTGTGGG+AGG + Chr3:74039397-74039416 MsG0380015710.01.T01:CDS 45.0%
ATCAGCAGCTACTGTAAGAG+TGG + Chr3:74040059-74040078 MsG0380015710.01.T01:CDS 45.0%
ATTTCGATGGAAATGGACCC+GGG + Chr3:74039291-74039310 MsG0380015710.01.T01:CDS 45.0%
CACATTTCACCAGTCTGATG+AGG - Chr3:74039513-74039532 None:intergenic 45.0%
CATGTACTCATTCACCTTCC+TGG - Chr3:74040186-74040205 None:intergenic 45.0%
CCAAAAAACACCGTCTGAAG+CGG - Chr3:74039180-74039199 None:intergenic 45.0%
CTCATCAGACTGGTGAAATG+TGG + Chr3:74039511-74039530 MsG0380015710.01.T01:CDS 45.0%
GAGAGCTGCCAAATGATTCT+TGG - Chr3:74040340-74040359 None:intergenic 45.0%
GATTGTGTCTCAGAAGGCAA+TGG - Chr3:74039978-74039997 None:intergenic 45.0%
GGCGCTAGTGCACAAAAAAT+GGG - Chr3:74038865-74038884 None:intergenic 45.0%
GGGAGTGAATAGAGTTTCTC+TGG + Chr3:74039353-74039372 MsG0380015710.01.T01:CDS 45.0%
GTTGTTGAAGAGTTGTGGGA+GGG + Chr3:74039398-74039417 MsG0380015710.01.T01:CDS 45.0%
TCCTCCAAGTATGGTTGGAA+CGG + Chr3:74039221-74039240 MsG0380015710.01.T01:CDS 45.0%
! AAGTTTAAGGCTCGCCATTG+AGG + Chr3:74039539-74039558 MsG0380015710.01.T01:CDS 45.0%
! GAGTGGACATGTGGTTTTCT+TGG + Chr3:74040400-74040419 MsG0380015710.01.T01:CDS 45.0%
! TGGCTCTGCAGAGAAATCAA+TGG + Chr3:74039117-74039136 MsG0380015710.01.T01:CDS 45.0%
! TGGTTTGGATGAGGTTCATG+AGG + Chr3:74039425-74039444 MsG0380015710.01.T01:CDS 45.0%
! TGGTTTTCTTGGACGAGCAA+AGG + Chr3:74040411-74040430 MsG0380015710.01.T01:CDS 45.0%
!! GAGGAGTTTTGTCGAACAGT+TGG - Chr3:74038940-74038959 None:intergenic 45.0%
!! GTTTGAGGTTTTCAAGACCC+AGG + Chr3:74040165-74040184 MsG0380015710.01.T01:CDS 45.0%
!! TAGACCTCTTGCTGTTCTCA+AGG - Chr3:74040303-74040322 None:intergenic 45.0%
!! TGGGGTTATTGACTCTTGGA+GGG + Chr3:74040565-74040584 MsG0380015710.01.T01:CDS 45.0%
!! TTGGGGTTATTGACTCTTGG+AGG + Chr3:74040564-74040583 MsG0380015710.01.T01:CDS 45.0%
!!! AGACGGTGTTTTTTGGAGGT+GGG + Chr3:74039184-74039203 MsG0380015710.01.T01:CDS 45.0%
!!! ATTAGGCGGGTTGATGGTTT+TGG - Chr3:74038892-74038911 None:intergenic 45.0%
!!! CGGGTTGATGGTTTTGGTTT+GGG - Chr3:74038886-74038905 None:intergenic 45.0%
!!! CTTCAGACGGTGTTTTTTGG+AGG + Chr3:74039180-74039199 MsG0380015710.01.T01:CDS 45.0%
!!! GGTTGGGTTGTTTTTGAGTG+AGG - Chr3:74038962-74038981 None:intergenic 45.0%
!!! TGGGTTGTTTTTGAGTGAGG+AGG - Chr3:74038959-74038978 None:intergenic 45.0%
ACCGTTCCAACCATACTTGG+AGG - Chr3:74039225-74039244 None:intergenic 50.0%
AGCGTTTACGACAGAAAGGG+AGG - Chr3:74039011-74039030 None:intergenic 50.0%
ATACTTGGAGGAACCAGGGA+CGG - Chr3:74039213-74039232 None:intergenic 50.0%
CAACCATACTTGGAGGAACC+AGG - Chr3:74039218-74039237 None:intergenic 50.0%
CCTTTCTATGCCTTTGGCCT+CGG + Chr3:74040122-74040141 MsG0380015710.01.T01:CDS 50.0%
CTGGTTCCTCCAAGTATGGT+TGG + Chr3:74039216-74039235 MsG0380015710.01.T01:CDS 50.0%
CTGTCCTTGAGAACAGCAAG+AGG + Chr3:74040296-74040315 MsG0380015710.01.T01:CDS 50.0%
GAAGGCAATGGAAATTCCCC+TGG - Chr3:74039966-74039985 None:intergenic 50.0%
GAGTTTAGGCGCGAAATCAC+TGG - Chr3:74039664-74039683 None:intergenic 50.0%
GCTTCATTGCCTCATCAGAC+TGG + Chr3:74039501-74039520 MsG0380015710.01.T01:CDS 50.0%
GGCAGCGTTTACGACAGAAA+GGG - Chr3:74039014-74039033 None:intergenic 50.0%
GGGCGCTAGTGCACAAAAAA+TGG - Chr3:74038866-74038885 None:intergenic 50.0%
GTAAGCTGAAGAAGGGGTGA+TGG - Chr3:74038983-74039002 None:intergenic 50.0%
GTAGCTTCTTGGAGTGCAGA+AGG - Chr3:74040596-74040615 None:intergenic 50.0%
TCAGACTGGTGAAATGTGGG+AGG + Chr3:74039515-74039534 MsG0380015710.01.T01:CDS 50.0%
TCTGGGAGTTCAAGCGTTTC+AGG + Chr3:74039371-74039390 MsG0380015710.01.T01:CDS 50.0%
TGGCAGCGTTTACGACAGAA+AGG - Chr3:74039015-74039034 None:intergenic 50.0%
! ATGAGTTGGCTGTGCCTCAA+TGG - Chr3:74039556-74039575 None:intergenic 50.0%
! CTGAAGAAGGGGTGATGGTT+GGG - Chr3:74038978-74038997 None:intergenic 50.0%
!! GAGGTTTTCAAGACCCAGGA+AGG + Chr3:74040169-74040188 MsG0380015710.01.T01:CDS 50.0%
!! TCAGCGGATTGTGTCTCAGA+AGG - Chr3:74039984-74040003 None:intergenic 50.0%
!! TCTGGTTCTCTCTCTGGTTG+AGG + Chr3:74040358-74040377 MsG0380015710.01.T01:CDS 50.0%
!!! CAGACGGTGTTTTTTGGAGG+TGG + Chr3:74039183-74039202 MsG0380015710.01.T01:CDS 50.0%
!!! CCGCTTCAGACGGTGTTTTT+TGG + Chr3:74039177-74039196 MsG0380015710.01.T01:CDS 50.0%
!!! GCGGGTTGATGGTTTTGGTT+TGG - Chr3:74038887-74038906 None:intergenic 50.0%
ACTAGTAGAGCCGAGGCCAA+AGG - Chr3:74040135-74040154 None:intergenic 55.0%
CGATGGGGAAGTCACAGTAG+TGG - Chr3:74039035-74039054 None:intergenic 55.0%
GTCCCTGGTTCCTCCAAGTA+TGG + Chr3:74039212-74039231 MsG0380015710.01.T01:CDS 55.0%
TGCAAAGACGCCGCTTCAGA+CGG + Chr3:74039167-74039186 MsG0380015710.01.T01:CDS 55.0%
! AAGAGTTGTGGGAGGGCACA+TGG + Chr3:74039405-74039424 MsG0380015710.01.T01:CDS 55.0%
! CCGAGGCCAAAGGCATAGAA+AGG - Chr3:74040125-74040144 None:intergenic 55.0%
! GAGGGCACATGGTTTGGATG+AGG + Chr3:74039416-74039435 MsG0380015710.01.T01:CDS 55.0%
! GCTGAAGAAGGGGTGATGGT+TGG - Chr3:74038979-74038998 None:intergenic 55.0%
! TTGTGGGAGGGCACATGGTT+TGG + Chr3:74039410-74039429 MsG0380015710.01.T01:CDS 55.0%
!! CAGCTCTCTGGTTCTCTCTC+TGG + Chr3:74040352-74040371 MsG0380015710.01.T01:CDS 55.0%
GACTTCCCCATCGTCGCTCT+CGG + Chr3:74039042-74039061 MsG0380015710.01.T01:CDS 60.0%
AGCGCAGCCGAGAGCGACGA+TGG - Chr3:74039052-74039071 None:intergenic 70.0%
CGCAGCCGAGAGCGACGATG+GGG - Chr3:74039050-74039069 None:intergenic 70.0%
GCGCAGCCGAGAGCGACGAT+GGG - Chr3:74039051-74039070 None:intergenic 70.0%
TGGAGGTGGGACGCCGTCCC+TGG + Chr3:74039197-74039216 MsG0380015710.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74038841 74040619 74038841 ID=MsG0380015710.01;Name=MsG0380015710.01
Chr3 mRNA 74038841 74040619 74038841 ID=MsG0380015710.01.T01;Parent=MsG0380015710.01;Name=MsG0380015710.01.T01;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|482
Chr3 exon 74038841 74039625 74038841 ID=MsG0380015710.01.T01:exon:872;Parent=MsG0380015710.01.T01
Chr3 exon 74039956 74040619 74039956 ID=MsG0380015710.01.T01:exon:873;Parent=MsG0380015710.01.T01
Chr3 CDS 74038841 74039625 74038841 ID=MsG0380015710.01.T01:cds;Parent=MsG0380015710.01.T01
Chr3 CDS 74039956 74040619 74039956 ID=MsG0380015710.01.T01:cds;Parent=MsG0380015710.01.T01
Gene Sequence

>MsG0380015710.01.T01

ATGCTAAAATCAACATTCACACCCATTTTTTGTGCACTAGCGCCCAAACCAAAACCATCAACCCGCCTAATAACAAACACTTTTTCAAACAGCACACCAACTGTTCGACAAAACTCCTCCTCACTCAAAAACAACCCAACCATCACCCCTTCTTCAGCTTACATTCACCTCCCTTTCTGTCGTAAACGCTGCCACTACTGTGACTTCCCCATCGTCGCTCTCGGCTGCGCTTCAACGCAAACAAACGACGACCCGCGTGTCATAAACTACATTCAATGGCTCTGCAGAGAAATCAATGGAACTAAAATAGAAGATGAACTTGATTCTGCAAAGACGCCGCTTCAGACGGTGTTTTTTGGAGGTGGGACGCCGTCCCTGGTTCCTCCAAGTATGGTTGGAACGGTTTTGGAGACATTGAAGATGAAATTTGGGGTGAGTGAAAGTGCTGAAATTTCGATGGAAATGGACCCGGGTACGTTTGATTGTAAGAAGATGGAAGAGATGATGTTGTTGGGAGTGAATAGAGTTTCTCTGGGAGTTCAAGCGTTTCAGGAGAAGTTGTTGAAGAGTTGTGGGAGGGCACATGGTTTGGATGAGGTTCATGAGGCTATTGATATAGTTAAAAAGTGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCATTGCCTCATCAGACTGGTGAAATGTGGGAGGAAAGTTTAAGGCTCGCCATTGAGGCACAGCCAACTCATGTTTCTGTTTATGATCTGCAAATTGAACAAGGCACAAAATTTGGAAGGCTGTATTCACCAGGGGAATTTCCATTGCCTTCTGAGACACAATCCGCTGATTTTTATACGATGGCTTCAAGGATGCTTCGTGATGCCAATTATAACCATTATGAAATCAGCAGCTACTGTAAGAGTGGTTATGAGTGTAGACACAACTTTACCTATTGGAAGTACAAGCCTTTCTATGCCTTTGGCCTCGGCTCTACTAGTTTTATTGGTGGTTTGAGGTTTTCAAGACCCAGGAAGGTGAATGAGTACATGAAATTCGTGGAAAATCTGGAAAATGGATCAGTAAATAGCTCATCTGATGACAACATTAATAGCAAGGACAAAGCATTGGATATTGTGATGCTGTCCTTGAGAACAGCAAGAGGTCTAGACTTGAAGCGTTACCAAGAATCATTTGGCAGCTCTCTGGTTCTCTCTCTGGTTGAGGTTTATAAACCTTATGTTGAGAGTGGACATGTGGTTTTCTTGGACGAGCAAAGGAGAGCTGTTAGAATAGACGACATCAACAATTCTCTTTTGGACGAAACTGACTTAGAAAAGAGAGTGGCCTATATGAGGCTAAGTGATCCAAATGGTTTCCTTTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAGGGATTATCCTTCTGCACTCCAAGAAGCTACCTGA

Protein sequence

>MsG0380015710.01.T01

MLKSTFTPIFCALAPKPKPSTRLITNTFSNSTPTVRQNSSSLKNNPTITPSSAYIHLPFCRKRCHYCDFPIVALGCASTQTNDDPRVINYIQWLCREINGTKIEDELDSAKTPLQTVFFGGGTPSLVPPSMVGTVLETLKMKFGVSESAEISMEMDPGTFDCKKMEEMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLDEVHEAIDIVKKCGVENWSIDLIASLPHQTGEMWEESLRLAIEAQPTHVSVYDLQIEQGTKFGRLYSPGEFPLPSETQSADFYTMASRMLRDANYNHYEISSYCKSGYECRHNFTYWKYKPFYAFGLGSTSFIGGLRFSRPRKVNEYMKFVENLENGSVNSSSDDNINSKDKALDIVMLSLRTARGLDLKRYQESFGSSLVLSLVEVYKPYVESGHVVFLDEQRRAVRIDDINNSLLDETDLEKRVAYMRLSDPNGFLLSNELIALAFGVIDSWRDYPSALQEAT*