Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000500 | XP_003626542.2 | 82.166 | 157 | 21 | 3 | 13 | 165 | 11 | 164 | 3.23e-82 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000500 | sp|Q6H805|ORR24_ORYSJ | 42.667 | 150 | 54 | 4 | 165 | 300 | 176 | 307 | 2.71e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0000500 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000500 | Msa0005690 | 0.811351 | 7.310571e-51 | -8.615850e-47 |
| Msa0000500 | Msa0030400 | 0.807978 | 3.880893e-50 | -8.615850e-47 |
| Msa0000500 | Msa0032040 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa0000500 | Msa0034340 | 0.819856 | 9.324219e-53 | -8.615850e-47 |
| Msa0000500 | Msa0046360 | 0.818657 | 1.748259e-52 | -8.615850e-47 |
| Msa0000500 | Msa0055530 | 0.830401 | 2.998038e-55 | -8.615850e-47 |
| Msa0000500 | Msa0070740 | 0.818102 | 2.335729e-52 | -8.615850e-47 |
| Msa0000500 | Msa0072710 | 0.831519 | 1.594400e-55 | -8.615850e-47 |
| Msa0000500 | Msa0074760 | 0.803508 | 3.371702e-49 | -8.615850e-47 |
| Msa0000500 | Msa0083160 | 0.822977 | 1.774562e-53 | -8.615850e-47 |
| Msa0000500 | Msa0091340 | 0.801652 | 8.138244e-49 | -8.615850e-47 |
| Msa0000500 | Msa0094990 | 0.804540 | 2.056838e-49 | -8.615850e-47 |
| Msa0000500 | Msa0096510 | 0.808321 | 3.280172e-50 | -8.615850e-47 |
| Msa0000500 | Msa0126760 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0000500 | Msa0131390 | 0.820142 | 8.017779e-53 | -8.615850e-47 |
| Msa0000500 | Msa0162030 | 0.808828 | 2.556177e-50 | -8.615850e-47 |
| Msa0000500 | Msa0162050 | 0.801065 | 1.073246e-48 | -8.615850e-47 |
| Msa0000500 | Msa0162070 | 0.812213 | 4.747006e-51 | -8.615850e-47 |
| Msa0000500 | Msa0164630 | 0.819155 | 1.347374e-52 | -8.615850e-47 |
| Msa0000500 | Msa0173760 | 0.821626 | 3.654050e-53 | -8.615850e-47 |
| Msa0000500 | Msa0173850 | 0.809073 | 2.266173e-50 | -8.615850e-47 |
| Msa0000500 | Msa0175530 | 0.807811 | 4.212669e-50 | -8.615850e-47 |
| Msa0000500 | Msa0177490 | 0.822248 | 2.621971e-53 | -8.615850e-47 |
| Msa0000500 | Msa0181290 | 0.816525 | 5.288775e-52 | -8.615850e-47 |
| Msa0000500 | Msa0181410 | 0.807527 | 4.838900e-50 | -8.615850e-47 |
| Msa0000500 | Msa0185550 | 0.803284 | 3.751393e-49 | -8.615850e-47 |
| Msa0000500 | Msa0206600 | 0.805545 | 1.267454e-49 | -8.615850e-47 |
| Msa0000500 | Msa0206940 | 0.821667 | 3.574100e-53 | -8.615850e-47 |
| Msa0000500 | Msa0217470 | 0.810448 | 1.146748e-50 | -8.615850e-47 |
| Msa0000500 | Msa0251140 | 0.831022 | 2.112144e-55 | -8.615850e-47 |
| Msa0000500 | Msa0269360 | 0.822197 | 2.694398e-53 | -8.615850e-47 |
| Msa0000500 | Msa0272420 | 0.831888 | 1.293055e-55 | -8.615850e-47 |
| Msa0000500 | Msa0282860 | 0.815596 | 8.525631e-52 | -8.615850e-47 |
| Msa0000500 | Msa0296610 | 0.803858 | 2.852538e-49 | -8.615850e-47 |
| Msa0000500 | Msa0312570 | 0.819268 | 1.269733e-52 | -8.615850e-47 |
| Msa0000500 | Msa0312780 | 0.862651 | 4.356390e-64 | -8.615850e-47 |
| Msa0000500 | Msa0315010 | 0.810418 | 1.164390e-50 | -8.615850e-47 |
| Msa0000500 | Msa0365870 | 0.807032 | 6.162091e-50 | -8.615850e-47 |
| Msa0000500 | Msa0376900 | 0.829079 | 6.290647e-55 | -8.615850e-47 |
| Msa0000500 | Msa0386390 | 0.803341 | 3.651414e-49 | -8.615850e-47 |
| Msa0000500 | Msa0387790 | 0.806953 | 6.403465e-50 | -8.615850e-47 |
| Msa0000500 | Msa0396970 | 0.810933 | 9.007757e-51 | -8.615850e-47 |
| Msa0000500 | Msa0397000 | 0.807791 | 4.253692e-50 | -8.615850e-47 |
| Msa0000500 | Msa0413740 | 0.824925 | 6.196099e-54 | -8.615850e-47 |
| Msa0000500 | Msa0416000 | 0.819153 | 1.348709e-52 | -8.615850e-47 |
| Msa0000500 | Msa0423110 | 0.800421 | 1.452462e-48 | -8.615850e-47 |
| Msa0000500 | Msa0423590 | 0.821486 | 3.936240e-53 | -8.615850e-47 |
| Msa0000500 | Msa0423600 | 0.832479 | 9.235421e-56 | -8.615850e-47 |
| Msa0000500 | Msa0438440 | 0.815865 | 7.426595e-52 | -8.615850e-47 |
| Msa0000500 | Msa0440110 | 0.851149 | 1.070808e-60 | -8.615850e-47 |
| Msa0000500 | Msa0458790 | 0.810797 | 9.640480e-51 | -8.615850e-47 |
| Msa0000500 | Msa0467710 | 0.806995 | 6.275270e-50 | -8.615850e-47 |
| Msa0000500 | Msa0469270 | 0.804443 | 2.155129e-49 | -8.615850e-47 |
| Msa0000500 | Msa0470650 | 0.812981 | 3.223977e-51 | -8.615850e-47 |
| Msa0000500 | Msa0471080 | 0.834768 | 2.476012e-56 | -8.615850e-47 |
| Msa0000500 | Msa0471090 | 0.801882 | 7.301018e-49 | -8.615850e-47 |
| Msa0000500 | Msa0471890 | 0.847029 | 1.497413e-59 | -8.615850e-47 |
| Msa0000500 | Msa0475740 | 0.850656 | 1.474813e-60 | -8.615850e-47 |
| Msa0000500 | Msa0476150 | 0.803649 | 3.151282e-49 | -8.615850e-47 |
| Msa0000500 | Msa0476180 | 0.824010 | 1.017572e-53 | -8.615850e-47 |
| Msa0000500 | Msa0479790 | 0.803559 | 3.290878e-49 | -8.615850e-47 |
| Msa0000500 | Msa0505390 | 0.826203 | 3.086635e-54 | -8.615850e-47 |
| Msa0000500 | Msa0511890 | 0.807119 | 5.907314e-50 | -8.615850e-47 |
| Msa0000500 | Msa0512310 | 0.814109 | 1.821064e-51 | -8.615850e-47 |
| Msa0000500 | Msa0515680 | 0.810536 | 1.097775e-50 | -8.615850e-47 |
| Msa0000500 | Msa0516480 | 0.804654 | 1.946891e-49 | -8.615850e-47 |
| Msa0000500 | Msa0524050 | 0.813927 | 1.998100e-51 | -8.615850e-47 |
| Msa0000500 | Msa0528740 | 0.816900 | 4.356417e-52 | -8.615850e-47 |
| Msa0000500 | Msa0540520 | 0.812563 | 3.980087e-51 | -8.615850e-47 |
| Msa0000500 | Msa0542040 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0000500 | Msa0555980 | 0.817997 | 2.466163e-52 | -8.615850e-47 |
| Msa0000500 | Msa0568810 | 0.803015 | 4.264013e-49 | -8.615850e-47 |
| Msa0000500 | Msa0569930 | 0.804280 | 2.329826e-49 | -8.615850e-47 |
| Msa0000500 | Msa0570490 | 0.815878 | 7.376975e-52 | -8.615850e-47 |
| Msa0000500 | Msa0573970 | 0.810884 | 9.232920e-51 | -8.615850e-47 |
| Msa0000500 | Msa0579610 | 0.810685 | 1.019507e-50 | -8.615850e-47 |
| Msa0000500 | Msa0587060 | 0.800841 | 1.192818e-48 | -8.615850e-47 |
| Msa0000500 | Msa0589540 | 0.812383 | 4.357521e-51 | -8.615850e-47 |
| Msa0000500 | Msa0599250 | 0.808828 | 2.556840e-50 | -8.615850e-47 |
| Msa0000500 | Msa0607440 | 0.849229 | 3.698267e-60 | -8.615850e-47 |
| Msa0000500 | Msa0609990 | 0.804167 | 2.459537e-49 | -8.615850e-47 |
| Msa0000500 | Msa0618260 | 0.821558 | 3.788184e-53 | -8.615850e-47 |
| Msa0000500 | Msa0622390 | 0.800535 | 1.377356e-48 | -8.615850e-47 |
| Msa0000500 | Msa0625310 | 0.811457 | 6.935484e-51 | -8.615850e-47 |
| Msa0000500 | Msa0626890 | 0.820991 | 5.119184e-53 | -8.615850e-47 |
| Msa0000500 | Msa0635470 | 0.822317 | 2.527034e-53 | -8.615850e-47 |
| Msa0000500 | Msa0639030 | 0.805906 | 1.064414e-49 | -8.615850e-47 |
| Msa0000500 | Msa0645780 | 0.815156 | 1.068111e-51 | -8.615850e-47 |
| Msa0000500 | Msa0646390 | 0.830646 | 2.612147e-55 | -8.615850e-47 |
| Msa0000500 | Msa0650360 | 0.821100 | 4.830212e-53 | -8.615850e-47 |
| Msa0000500 | Msa0657820 | 0.806426 | 8.275133e-50 | -8.615850e-47 |
| Msa0000500 | Msa0668160 | 0.818226 | 2.188843e-52 | -8.615850e-47 |
| Msa0000500 | Msa0677840 | 0.820229 | 7.659608e-53 | -8.615850e-47 |
| Msa0000500 | Msa0678240 | 0.817681 | 2.906176e-52 | -8.615850e-47 |
| Msa0000500 | Msa0685880 | 0.820871 | 5.454262e-53 | -8.615850e-47 |
| Msa0000500 | Msa0692910 | 0.813160 | 2.946583e-51 | -8.615850e-47 |
| Msa0000500 | Msa0714020 | 0.804179 | 2.445466e-49 | -8.615850e-47 |
| Msa0000500 | Msa0715180 | 0.807574 | 4.729941e-50 | -8.615850e-47 |
| Msa0000500 | Msa0749900 | 0.804003 | 2.660597e-49 | -8.615850e-47 |
| Msa0000500 | Msa0756480 | 0.817717 | 2.852740e-52 | -8.615850e-47 |
| Msa0000500 | Msa0790830 | 0.812456 | 4.202295e-51 | -8.615850e-47 |
| Msa0000500 | Msa0792170 | 0.828351 | 9.436558e-55 | -8.615850e-47 |
| Msa0000500 | Msa0792510 | 0.801390 | 9.209765e-49 | -8.615850e-47 |
| Msa0000500 | Msa0799290 | -0.802923 | 4.456134e-49 | -8.615850e-47 |
| Msa0000500 | Msa0814780 | 0.805401 | 1.358733e-49 | -8.615850e-47 |
| Msa0000500 | Msa0829430 | 0.838208 | 3.297000e-57 | -8.615850e-47 |
| Msa0000500 | Msa0830120 | 0.814259 | 1.687496e-51 | -8.615850e-47 |
| Msa0000500 | Msa0830450 | 0.810739 | 9.923822e-51 | -8.615850e-47 |
| Msa0000500 | Msa0835510 | 0.812227 | 4.712960e-51 | -8.615850e-47 |
| Msa0000500 | Msa0836200 | 0.840796 | 7.007857e-58 | -8.615850e-47 |
| Msa0000500 | Msa0837510 | -0.802887 | 4.531523e-49 | -8.615850e-47 |
| Msa0000500 | Msa0840630 | 0.814142 | 1.790690e-51 | -8.615850e-47 |
| Msa0000500 | Msa0853920 | 0.803866 | 2.841259e-49 | -8.615850e-47 |
| Msa0000500 | Msa0868040 | 0.802341 | 5.874718e-49 | -8.615850e-47 |
| Msa0000500 | Msa0883660 | 0.807804 | 4.225873e-50 | -8.615850e-47 |
| Msa0000500 | Msa0887000 | 0.801136 | 1.038246e-48 | -8.615850e-47 |
| Msa0000500 | Msa0929400 | 0.833742 | 4.478191e-56 | -8.615850e-47 |
| Msa0000500 | Msa0931730 | 0.805329 | 1.406944e-49 | -8.615850e-47 |
| Msa0000500 | Msa0967670 | 0.803826 | 2.896562e-49 | -8.615850e-47 |
| Msa0000500 | Msa0975080 | 0.802772 | 4.786817e-49 | -8.615850e-47 |
| Msa0000500 | Msa1016110 | 0.807489 | 4.929063e-50 | -8.615850e-47 |
| Msa0000500 | Msa1016670 | 0.806391 | 8.413861e-50 | -8.615850e-47 |
| Msa0000500 | Msa1028720 | 0.834582 | 2.758223e-56 | -8.615850e-47 |
| Msa0000500 | Msa1029430 | 0.816158 | 6.386414e-52 | -8.615850e-47 |
| Msa0000500 | Msa1037690 | 0.843730 | 1.170432e-58 | -8.615850e-47 |
| Msa0000500 | Msa1055360 | 0.817675 | 2.915801e-52 | -8.615850e-47 |
| Msa0000500 | Msa1067710 | 0.852194 | 5.417236e-61 | -8.615850e-47 |
| Msa0000500 | Msa1070830 | 0.812855 | 3.436691e-51 | -8.615850e-47 |
| Msa0000500 | Msa1072640 | 0.811248 | 7.698040e-51 | -8.615850e-47 |
| Msa0000500 | Msa1081700 | 0.848454 | 6.065422e-60 | -8.615850e-47 |
| Msa0000500 | Msa1081850 | 0.822352 | 2.480333e-53 | -8.615850e-47 |
| Msa0000500 | Msa1093390 | 0.828077 | 1.098640e-54 | -8.615850e-47 |
| Msa0000500 | Msa1105850 | 0.805762 | 1.141317e-49 | -8.615850e-47 |
| Msa0000500 | Msa1122510 | 0.802568 | 5.275036e-49 | -8.615850e-47 |
| Msa0000500 | Msa1125780 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0000500 | Msa1130220 | 0.930397 | 1.737502e-93 | -8.615850e-47 |
| Msa0000500 | Msa1130650 | 0.807408 | 5.130149e-50 | -8.615850e-47 |
| Msa0000500 | Msa1140010 | 0.820553 | 6.453010e-53 | -8.615850e-47 |
| Msa0000500 | Msa1145370 | 0.810753 | 9.855585e-51 | -8.615850e-47 |
| Msa0000500 | Msa1151120 | 0.801585 | 8.399017e-49 | -8.615850e-47 |
| Msa0000500 | Msa1151970 | 0.823391 | 1.420710e-53 | -8.615850e-47 |
| Msa0000500 | Msa1161160 | 0.800906 | 1.156964e-48 | -8.615850e-47 |
| Msa0000500 | Msa1161520 | 0.835374 | 1.741530e-56 | -8.615850e-47 |
| Msa0000500 | Msa1161760 | 0.811010 | 8.670917e-51 | -8.615850e-47 |
| Msa0000500 | Msa1182400 | 0.826239 | 3.025498e-54 | -8.615850e-47 |
| Msa0000500 | Msa1183730 | 0.819825 | 9.478173e-53 | -8.615850e-47 |
| Msa0000500 | Msa1184640 | 0.813734 | 2.203268e-51 | -8.615850e-47 |
| Msa0000500 | Msa1191390 | 0.819155 | 1.346930e-52 | -8.615850e-47 |
| Msa0000500 | Msa1206560 | 0.816493 | 5.374445e-52 | -8.615850e-47 |
| Msa0000500 | Msa1211110 | 0.808976 | 2.376417e-50 | -8.615850e-47 |
| Msa0000500 | Msa1212740 | 0.832467 | 9.296187e-56 | -8.615850e-47 |
| Msa0000500 | Msa1212960 | 0.811726 | 6.061980e-51 | -8.615850e-47 |
| Msa0000500 | Msa1221540 | 0.807608 | 4.652818e-50 | -8.615850e-47 |
| Msa0000500 | Msa1226600 | 0.821761 | 3.400055e-53 | -8.615850e-47 |
| Msa0000500 | Msa1230190 | 0.827302 | 1.686401e-54 | -8.615850e-47 |
| Msa0000500 | Msa1233770 | 0.819592 | 1.071097e-52 | -8.615850e-47 |
| Msa0000500 | Msa1238370 | 0.825288 | 5.086944e-54 | -8.615850e-47 |
| Msa0000500 | Msa1238700 | 0.805934 | 1.050251e-49 | -8.615850e-47 |
| Msa0000500 | Msa1245310 | 0.804717 | 1.889373e-49 | -8.615850e-47 |
| Msa0000500 | Msa1267330 | 0.803686 | 3.096763e-49 | -8.615850e-47 |
| Msa0000500 | Msa1276080 | 0.815669 | 8.212358e-52 | -8.615850e-47 |
| Msa0000500 | Msa1280020 | 0.831384 | 1.721558e-55 | -8.615850e-47 |
| Msa0000500 | Msa1291140 | 0.804599 | 1.999898e-49 | -8.615850e-47 |
| Msa0000500 | Msa1297720 | 0.805887 | 1.074214e-49 | -8.615850e-47 |
| Msa0000500 | Msa1310310 | 0.811123 | 8.193807e-51 | -8.615850e-47 |
| Msa0000500 | Msa1310340 | 0.802592 | 5.213472e-49 | -8.615850e-47 |
| Msa0000500 | Msa1316720 | 0.811351 | 7.312223e-51 | -8.615850e-47 |
| Msa0000500 | Msa1319440 | 0.826345 | 2.855033e-54 | -8.615850e-47 |
| Msa0000500 | Msa1326000 | 0.807052 | 6.102900e-50 | -8.615850e-47 |
| Msa0000500 | Msa1328600 | 0.806556 | 7.768517e-50 | -8.615850e-47 |
| Msa0000500 | Msa1331610 | 0.829465 | 5.071319e-55 | -8.615850e-47 |
| Msa0000500 | Msa1331730 | 0.801596 | 8.355030e-49 | -8.615850e-47 |
| Msa0000500 | Msa1333430 | 0.808717 | 2.700352e-50 | -8.615850e-47 |
| Msa0000500 | Msa1334020 | 0.819215 | 1.305679e-52 | -8.615850e-47 |
| Msa0000500 | Msa1341790 | 0.803511 | 3.366835e-49 | -8.615850e-47 |
| Msa0000500 | Msa1348240 | 0.800918 | 1.150494e-48 | -8.615850e-47 |
| Msa0000500 | Msa1356680 | 0.800843 | 1.191847e-48 | -8.615850e-47 |
| Msa0000500 | Msa1361090 | 0.807881 | 4.069414e-50 | -8.615850e-47 |
| Msa0000500 | Msa1365120 | 0.830142 | 3.468103e-55 | -8.615850e-47 |
| Msa0000500 | Msa1366700 | 0.800736 | 1.252803e-48 | -8.615850e-47 |
| Msa0000500 | Msa1373950 | 0.811970 | 5.363130e-51 | -8.615850e-47 |
| Msa0000500 | Msa1379360 | 0.814042 | 1.883927e-51 | -8.615850e-47 |
| Msa0000500 | Msa1384980 | 0.833698 | 4.593921e-56 | -8.615850e-47 |
| Msa0000500 | Msa1386020 | 0.833523 | 5.079016e-56 | -8.615850e-47 |
| Msa0000500 | Msa1391600 | 0.807974 | 3.888986e-50 | -8.615850e-47 |
| Msa0000500 | Msa1392680 | 0.812034 | 5.194758e-51 | -8.615850e-47 |
| Msa0000500 | Msa1395640 | 0.851293 | 9.750721e-61 | -8.615850e-47 |
| Msa0000500 | Msa1397110 | 0.845788 | 3.263279e-59 | -8.615850e-47 |
| Msa0000500 | Msa1403900 | 0.828652 | 7.980647e-55 | -8.615850e-47 |
| Msa0000500 | Msa1408190 | 0.845295 | 4.438685e-59 | -8.615850e-47 |
| Msa0000500 | Msa1418200 | 0.803550 | 3.304656e-49 | -8.615850e-47 |
| Msa0000500 | Msa1431240 | 0.810162 | 1.321701e-50 | -8.615850e-47 |
| Msa0000500 | Msa1432250 | 0.827344 | 1.648165e-54 | -8.615850e-47 |
| Msa0000500 | Msa1433380 | 0.805306 | 1.422957e-49 | -8.615850e-47 |
| Msa0000500 | Msa1435470 | 0.823909 | 1.074480e-53 | -8.615850e-47 |
| Msa0000500 | Msa1435910 | 0.802751 | 4.834294e-49 | -8.615850e-47 |
| Msa0000500 | Msa1437650 | 0.803002 | 4.291780e-49 | -8.615850e-47 |
| Msa0000500 | Msa1440980 | 0.817811 | 2.717401e-52 | -8.615850e-47 |
| Msa0000500 | Msa1448990 | 0.845759 | 3.323916e-59 | -8.615850e-47 |
| Msa0000500 | Msa1450420 | 0.842101 | 3.176617e-58 | -8.615850e-47 |
| Msa0000500 | Msa1450850 | 0.809825 | 1.562816e-50 | -8.615850e-47 |
| Msa0000500 | Msa1451780 | 0.827408 | 1.590959e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000500 | MtrunA17_Chr7g0275391 | 82.166 | 157 | 21 | 3 | 13 | 165 | 11 | 164 | 2.97e-86 | 255 |
| Msa0000500 | MtrunA17_Chr7g0275401 | 57.143 | 140 | 30 | 4 | 163 | 283 | 148 | 276 | 9.11e-40 | 140 |
| Msa0000500 | MtrunA17_Chr3g0137101 | 62.651 | 83 | 31 | 0 | 178 | 260 | 188 | 270 | 5.25e-27 | 110 |
| Msa0000500 | MtrunA17_Chr7g0275891 | 51.220 | 123 | 30 | 3 | 163 | 255 | 149 | 271 | 3.56e-26 | 105 |
| Msa0000500 | MtrunA17_Chr1g0149841 | 55.752 | 113 | 32 | 2 | 162 | 256 | 147 | 259 | 6.18e-26 | 107 |
| Msa0000500 | MtrunA17_Chr4g0050431 | 61.538 | 78 | 27 | 2 | 83 | 160 | 137 | 211 | 4.83e-23 | 99.4 |
| Msa0000500 | MtrunA17_Chr1g0161431 | 44.348 | 115 | 58 | 2 | 156 | 265 | 163 | 276 | 5.12e-22 | 96.3 |
| Msa0000500 | MtrunA17_Chr2g0304841 | 55.294 | 85 | 35 | 1 | 183 | 267 | 208 | 289 | 8.90e-22 | 95.5 |
| Msa0000500 | MtrunA17_Chr1g0149831 | 50.442 | 113 | 35 | 3 | 162 | 256 | 84 | 193 | 1.21e-21 | 91.3 |
| Msa0000500 | MtrunA17_Chr4g0009851 | 45.299 | 117 | 52 | 4 | 138 | 245 | 113 | 226 | 4.51e-21 | 91.3 |
| Msa0000500 | MtrunA17_Chr4g0074401 | 43.103 | 116 | 63 | 1 | 184 | 296 | 199 | 314 | 4.57e-20 | 90.5 |
| Msa0000500 | MtrunA17_Chr2g0294911 | 53.425 | 73 | 34 | 0 | 184 | 256 | 207 | 279 | 4.79e-19 | 87.4 |
| Msa0000500 | MtrunA17_Chr3g0134461 | 60.938 | 64 | 24 | 1 | 174 | 237 | 130 | 192 | 5.77e-19 | 83.2 |
| Msa0000500 | MtrunA17_Chr4g0067981 | 60.938 | 64 | 25 | 0 | 184 | 247 | 211 | 274 | 8.66e-19 | 86.7 |
| Msa0000500 | MtrunA17_Chr4g0009981 | 48.837 | 86 | 41 | 2 | 172 | 256 | 99 | 182 | 4.32e-18 | 82.0 |
| Msa0000500 | MtrunA17_Chr4g0074411 | 42.241 | 116 | 64 | 1 | 184 | 296 | 197 | 312 | 6.00e-18 | 84.0 |
| Msa0000500 | MtrunA17_Chr4g0009901 | 40.517 | 116 | 58 | 2 | 131 | 244 | 118 | 224 | 6.71e-18 | 82.0 |
| Msa0000500 | MtrunA17_Chr4g0074421 | 36.719 | 128 | 65 | 3 | 125 | 237 | 56 | 182 | 3.39e-17 | 78.2 |
| Msa0000500 | MtrunA17_Chr8g0376881 | 48.980 | 98 | 42 | 2 | 165 | 254 | 178 | 275 | 4.95e-17 | 81.3 |
| Msa0000500 | MtrunA17_Chr6g0471041 | 54.286 | 70 | 30 | 1 | 176 | 245 | 162 | 229 | 5.66e-16 | 77.8 |
| Msa0000500 | MtrunA17_Chr3g0123131 | 53.521 | 71 | 33 | 0 | 184 | 254 | 195 | 265 | 6.13e-16 | 78.2 |
| Msa0000500 | MtrunA17_Chr6g0473731 | 56.667 | 60 | 26 | 0 | 187 | 246 | 94 | 153 | 7.66e-16 | 77.4 |
| Msa0000500 | MtrunA17_Chr1g0149851 | 39.259 | 135 | 54 | 4 | 184 | 300 | 187 | 311 | 2.59e-15 | 76.3 |
| Msa0000500 | MtrunA17_Chr4g0009991 | 38.596 | 114 | 65 | 2 | 129 | 237 | 3 | 116 | 3.91e-15 | 70.9 |
| Msa0000500 | MtrunA17_Chr3g0134481 | 58.491 | 53 | 22 | 0 | 187 | 239 | 131 | 183 | 1.01e-14 | 71.2 |
| Msa0000500 | MtrunA17_Chr1g0190301 | 40.351 | 114 | 58 | 5 | 137 | 240 | 115 | 228 | 5.57e-14 | 71.6 |
| Msa0000500 | MtrunA17_Chr4g0031961 | 50.000 | 62 | 31 | 0 | 185 | 246 | 128 | 189 | 1.05e-13 | 70.5 |
| Msa0000500 | MtrunA17_Chr7g0274471 | 60.714 | 56 | 21 | 1 | 186 | 240 | 216 | 271 | 1.73e-13 | 70.5 |
| Msa0000500 | MtrunA17_Chr4g0040481 | 42.169 | 83 | 46 | 1 | 183 | 263 | 153 | 235 | 3.00e-13 | 69.7 |
| Msa0000500 | MtrunA17_Chr2g0324891 | 38.043 | 92 | 56 | 1 | 165 | 255 | 137 | 228 | 5.72e-13 | 68.9 |
| Msa0000500 | MtrunA17_Chr7g0255711 | 48.387 | 62 | 32 | 0 | 185 | 246 | 88 | 149 | 6.56e-13 | 67.8 |
| Msa0000500 | MtrunA17_Chr5g0400241 | 44.737 | 76 | 42 | 0 | 171 | 246 | 294 | 369 | 7.42e-13 | 68.9 |
| Msa0000500 | MtrunA17_Chr4g0054981 | 45.946 | 74 | 40 | 0 | 167 | 240 | 289 | 362 | 1.70e-12 | 67.8 |
| Msa0000500 | MtrunA17_Chr6g0469321 | 60.377 | 53 | 21 | 0 | 204 | 256 | 70 | 122 | 1.80e-12 | 64.7 |
| Msa0000500 | MtrunA17_Chr1g0198601 | 41.758 | 91 | 48 | 2 | 166 | 255 | 193 | 279 | 7.09e-12 | 65.5 |
| Msa0000500 | MtrunA17_Chr6g0461641 | 51.724 | 58 | 27 | 1 | 184 | 240 | 38 | 95 | 8.08e-12 | 65.5 |
| Msa0000500 | MtrunA17_Chr3g0136331 | 37.288 | 118 | 67 | 2 | 80 | 197 | 84 | 194 | 2.44e-11 | 64.3 |
| Msa0000500 | MtrunA17_Chr5g0417521 | 48.276 | 58 | 29 | 1 | 184 | 240 | 11 | 68 | 3.38e-11 | 63.2 |
| Msa0000500 | MtrunA17_Chr1g0175091 | 40.964 | 83 | 46 | 2 | 181 | 260 | 251 | 333 | 3.63e-11 | 63.5 |
| Msa0000500 | MtrunA17_Chr2g0321461 | 50.000 | 58 | 28 | 1 | 184 | 240 | 41 | 98 | 3.81e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000500 | AT4G31920.1 | 56.627 | 83 | 36 | 0 | 176 | 258 | 171 | 253 | 4.11e-23 | 99.8 |
| Msa0000500 | AT4G33520.4 | 51.685 | 89 | 40 | 1 | 73 | 161 | 140 | 225 | 9.32e-23 | 94.7 |
| Msa0000500 | AT4G33520.1 | 52.273 | 88 | 39 | 1 | 73 | 160 | 140 | 224 | 1.74e-22 | 94.0 |
| Msa0000500 | AT5G58080.1 | 41.259 | 143 | 58 | 3 | 144 | 262 | 126 | 266 | 1.82e-22 | 97.8 |
| Msa0000500 | AT4G33520.2 | 46.957 | 115 | 52 | 3 | 83 | 194 | 150 | 258 | 1.86e-21 | 95.1 |
| Msa0000500 | AT4G33520.3 | 46.957 | 115 | 52 | 3 | 83 | 194 | 150 | 258 | 1.87e-21 | 95.1 |
| Msa0000500 | AT3G16857.1 | 45.794 | 107 | 48 | 2 | 173 | 269 | 213 | 319 | 3.88e-20 | 91.3 |
| Msa0000500 | AT3G16857.2 | 45.794 | 107 | 48 | 2 | 173 | 269 | 213 | 319 | 4.62e-20 | 90.9 |
| Msa0000500 | AT3G16857.3 | 45.794 | 107 | 48 | 2 | 173 | 269 | 143 | 249 | 4.98e-20 | 90.9 |
| Msa0000500 | AT2G25180.1 | 50.000 | 100 | 39 | 1 | 169 | 257 | 165 | 264 | 2.67e-19 | 88.6 |
| Msa0000500 | AT2G01760.3 | 53.425 | 73 | 33 | 1 | 183 | 255 | 130 | 201 | 4.07e-17 | 80.9 |
| Msa0000500 | AT2G01760.1 | 53.425 | 73 | 33 | 1 | 183 | 255 | 195 | 266 | 4.56e-17 | 81.3 |
| Msa0000500 | AT2G01760.2 | 53.425 | 73 | 33 | 1 | 183 | 255 | 223 | 294 | 4.60e-17 | 81.3 |
| Msa0000500 | AT2G20570.1 | 31.638 | 177 | 96 | 4 | 94 | 256 | 56 | 221 | 5.43e-16 | 78.2 |
| Msa0000500 | AT5G44190.2 | 49.367 | 79 | 37 | 1 | 178 | 256 | 140 | 215 | 6.09e-16 | 77.8 |
| Msa0000500 | AT5G44190.1 | 49.367 | 79 | 37 | 1 | 178 | 256 | 140 | 215 | 6.69e-16 | 77.8 |
| Msa0000500 | AT1G67710.1 | 60.000 | 65 | 25 | 1 | 190 | 253 | 195 | 259 | 6.84e-15 | 75.5 |
| Msa0000500 | AT1G67710.2 | 60.000 | 65 | 25 | 1 | 190 | 253 | 130 | 194 | 7.29e-15 | 75.1 |
| Msa0000500 | AT1G67710.3 | 60.000 | 65 | 25 | 1 | 190 | 253 | 121 | 185 | 7.34e-15 | 75.1 |
| Msa0000500 | AT5G07210.1 | 46.067 | 89 | 39 | 2 | 167 | 247 | 202 | 289 | 8.78e-15 | 75.1 |
| Msa0000500 | AT5G07210.2 | 46.067 | 89 | 39 | 2 | 167 | 247 | 194 | 281 | 8.88e-15 | 75.1 |
| Msa0000500 | AT5G59570.2 | 51.613 | 62 | 30 | 0 | 185 | 246 | 138 | 199 | 1.07e-14 | 73.6 |
| Msa0000500 | AT5G59570.1 | 51.613 | 62 | 30 | 0 | 185 | 246 | 138 | 199 | 1.07e-14 | 73.6 |
| Msa0000500 | AT2G40970.1 | 48.387 | 62 | 32 | 0 | 185 | 246 | 102 | 163 | 1.27e-13 | 69.7 |
| Msa0000500 | AT3G46640.3 | 50.000 | 62 | 31 | 0 | 185 | 246 | 141 | 202 | 1.30e-13 | 70.5 |
| Msa0000500 | AT3G46640.2 | 50.000 | 62 | 31 | 0 | 185 | 246 | 141 | 202 | 1.39e-13 | 70.5 |
| Msa0000500 | AT3G46640.1 | 50.000 | 62 | 31 | 0 | 185 | 246 | 141 | 202 | 1.39e-13 | 70.5 |
| Msa0000500 | AT5G05090.1 | 47.761 | 67 | 34 | 1 | 181 | 246 | 73 | 139 | 4.79e-13 | 68.6 |
| Msa0000500 | AT3G10760.1 | 48.387 | 62 | 32 | 0 | 185 | 246 | 102 | 163 | 5.12e-13 | 68.9 |
| Msa0000500 | AT2G20570.2 | 29.474 | 190 | 99 | 4 | 94 | 256 | 56 | 237 | 6.04e-13 | 69.3 |
| Msa0000500 | AT2G27070.1 | 43.678 | 87 | 42 | 2 | 167 | 246 | 197 | 283 | 8.69e-13 | 68.9 |
| Msa0000500 | AT3G62670.1 | 38.462 | 104 | 59 | 2 | 169 | 267 | 192 | 295 | 1.60e-12 | 68.2 |
| Msa0000500 | AT4G18020.3 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 5.68e-12 | 66.6 |
| Msa0000500 | AT4G18020.2 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 5.68e-12 | 66.6 |
| Msa0000500 | AT4G18020.1 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 5.68e-12 | 66.6 |
| Msa0000500 | AT4G18020.6 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 5.68e-12 | 66.6 |
| Msa0000500 | AT4G18020.9 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 5.68e-12 | 66.6 |
| Msa0000500 | AT4G18020.8 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT4G18020.11 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT4G18020.4 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT4G18020.5 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT4G18020.10 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT4G18020.7 | 46.250 | 80 | 41 | 1 | 167 | 246 | 277 | 354 | 6.26e-12 | 66.2 |
| Msa0000500 | AT3G04030.1 | 43.750 | 80 | 39 | 2 | 184 | 262 | 41 | 115 | 7.80e-12 | 65.9 |
| Msa0000500 | AT1G69580.2 | 47.143 | 70 | 35 | 2 | 184 | 252 | 30 | 98 | 8.04e-12 | 65.5 |
| Msa0000500 | AT1G69580.1 | 47.143 | 70 | 35 | 2 | 184 | 252 | 30 | 98 | 8.08e-12 | 65.5 |
| Msa0000500 | AT3G04030.3 | 43.750 | 80 | 39 | 2 | 184 | 262 | 41 | 115 | 8.79e-12 | 65.5 |
| Msa0000500 | AT3G04450.1 | 31.429 | 140 | 89 | 4 | 128 | 260 | 172 | 311 | 4.65e-11 | 63.5 |
| Msa0000500 | AT3G04450.3 | 34.167 | 120 | 72 | 4 | 128 | 240 | 172 | 291 | 5.82e-11 | 62.8 |
| Msa0000500 | AT3G04450.4 | 31.429 | 140 | 89 | 4 | 128 | 260 | 132 | 271 | 7.22e-11 | 62.8 |
| Msa0000500 | AT3G04450.2 | 31.429 | 140 | 89 | 4 | 128 | 260 | 132 | 271 | 7.22e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTCTGAATCTCAATTT+TGG | 0.195929 | 1_1:-1664621 | Msa0000500:CDS |
| AAATATTACCTCTAAGTCTA+AGG | 0.276760 | 1_1:+1663985 | None:intergenic |
| GCTAAAATAATAATAATAAT+TGG | 0.283834 | 1_1:-1664756 | Msa0000500:five_prime_UTR |
| ACTTCTACCCTTAGACTTAG+AGG | 0.293678 | 1_1:-1663993 | Msa0000500:intron |
| TGCGTCACAGCAGAATGATT+TGG | 0.295260 | 1_1:+1664657 | None:intergenic |
| AAGCTGAAAAGTATTAGTTT+TGG | 0.311673 | 1_1:-1656813 | Msa0000500:CDS |
| CGAGGCTTCTTCTGCGTTGT+TGG | 0.319233 | 1_1:+1657511 | None:intergenic |
| CTTGTCGCAGTTAATCAATT+TGG | 0.331705 | 1_1:-1657454 | Msa0000500:CDS |
| GCGTCACAGCAGAATGATTT+GGG | 0.352377 | 1_1:+1664658 | None:intergenic |
| AAGAGAAAACTGCAACAAAT+TGG | 0.354991 | 1_1:-1664067 | Msa0000500:CDS |
| GGCATTCTTTGAACATGGTT+CGG | 0.389834 | 1_1:+1656695 | None:intergenic |
| TGAGATGCTACAGAAGAAAT+TGG | 0.393613 | 1_1:+1656674 | None:intergenic |
| AAACTTGTGGTGTAAGTTAT+CGG | 0.420834 | 1_1:+1657477 | None:intergenic |
| GCTGTTGTTCTCCATGTTCG+TGG | 0.430325 | 1_1:-1664468 | Msa0000500:CDS |
| TGGTTCTGTTACATTTCAAC+CGG | 0.443329 | 1_1:-1656751 | Msa0000500:CDS |
| TCTTTGAACATGGTTCGGTT+TGG | 0.444140 | 1_1:+1656700 | None:intergenic |
| TGAGCTTCAGCAGCTGCTGT+TGG | 0.445681 | 1_1:+1664583 | None:intergenic |
| CAACCGGCTTACGTTTCAAC+CGG | 0.445810 | 1_1:-1656735 | Msa0000500:CDS |
| GTTCGGTTTGGCGCGAGCTA+TGG | 0.448022 | 1_1:+1656712 | None:intergenic |
| ATCATGGAGGTGGTCCCCAC+TGG | 0.448930 | 1_1:+1664503 | None:intergenic |
| AATATGGTGGCAAATTTAGT+TGG | 0.450247 | 1_1:-1656774 | Msa0000500:CDS |
| ACAAATTGGCAAAAGCAGTT+AGG | 0.468817 | 1_1:-1664053 | Msa0000500:CDS |
| TTCGGATGACAAAGGGGAAA+GGG | 0.488766 | 1_1:+1664088 | None:intergenic |
| AATAATAATAATAATTGGAC+AGG | 0.490202 | 1_1:-1664751 | Msa0000500:five_prime_UTR |
| CTGCCAAAATTGAGATTCAG+AGG | 0.501848 | 1_1:+1664618 | None:intergenic |
| ACAGTAGCAGATAACACTTC+TGG | 0.505949 | 1_1:+1664140 | None:intergenic |
| ATGGTGGCAAATTTAGTTGG+TGG | 0.514377 | 1_1:-1656771 | Msa0000500:CDS |
| GGTTTGGCGCGAGCTATGGC+CGG | 0.518966 | 1_1:+1656716 | None:intergenic |
| TAAAACCACATGTTGTTAAG+TGG | 0.519304 | 1_1:+1664015 | None:intergenic |
| ATTCTGATAAATCTAGAAAG+AGG | 0.520246 | 1_1:-1657552 | Msa0000500:CDS |
| ACATGTGGCCAGCCATCTCC+AGG | 0.523004 | 1_1:-1657105 | Msa0000500:intron |
| CACACATCATTCCACGAACA+TGG | 0.531138 | 1_1:+1664457 | None:intergenic |
| GTCCCCACTGGAAGTAGTTG+AGG | 0.533910 | 1_1:+1664515 | None:intergenic |
| GGTGAACCGTAGGGACCTAA+AGG | 0.535536 | 1_1:-1664840 | None:intergenic |
| TAATTGGACAGGAACAAGAT+TGG | 0.536467 | 1_1:-1664740 | Msa0000500:five_prime_UTR |
| AGAAGAAGCCTCGAGTTGCT+TGG | 0.543514 | 1_1:-1657501 | Msa0000500:CDS |
| AAGAGGAAGGATAAGAATGA+TGG | 0.547203 | 1_1:-1657535 | Msa0000500:CDS |
| CAGCAGAATCATCATCATCA+TGG | 0.554273 | 1_1:+1664487 | None:intergenic |
| CTTCGGATGACAAAGGGGAA+AGG | 0.559317 | 1_1:+1664087 | None:intergenic |
| GCACACCACTTAACAACATG+TGG | 0.559641 | 1_1:-1664020 | Msa0000500:CDS |
| AATATTACCTCTAAGTCTAA+GGG | 0.564175 | 1_1:+1663986 | None:intergenic |
| AAACGCGATGATGATATTGA+TGG | 0.574757 | 1_1:+1664559 | None:intergenic |
| TGATAAATCTAGAAAGAGGA+AGG | 0.586660 | 1_1:-1657548 | Msa0000500:CDS |
| AAATTGGCATTCTTTGAACA+TGG | 0.589855 | 1_1:+1656690 | None:intergenic |
| CAACCTCAACTACTTCCAGT+GGG | 0.602218 | 1_1:-1664518 | Msa0000500:CDS |
| TGGCCGGTTGAAACGTAAGC+CGG | 0.611007 | 1_1:+1656732 | None:intergenic |
| AATCATCATCATCATGGAGG+TGG | 0.613652 | 1_1:+1664493 | None:intergenic |
| TCAACCTCAACTACTTCCAG+TGG | 0.617567 | 1_1:-1664519 | Msa0000500:CDS |
| GAATGCTGAAAATCTTACAA+AGG | 0.625912 | 1_1:-1657129 | Msa0000500:CDS |
| AAATCTTACAAAGGAACATG+TGG | 0.626847 | 1_1:-1657120 | Msa0000500:CDS |
| ATCAAGTTAAGAATCTTCTG+TGG | 0.644023 | 1_1:+1657152 | None:intergenic |
| GAGGTTGAACAACACCGCAA+TGG | 0.646311 | 1_1:+1664534 | None:intergenic |
| TTTCTCTTCGGATGACAAAG+GGG | 0.661704 | 1_1:+1664082 | None:intergenic |
| TTATCGGACCAAGCAACTCG+AGG | 0.664697 | 1_1:+1657493 | None:intergenic |
| GTTCGTGGAATGATGTGTGA+GGG | 0.680994 | 1_1:-1664453 | Msa0000500:CDS |
| TGTTCGTGGAATGATGTGTG+AGG | 0.700135 | 1_1:-1664454 | Msa0000500:CDS |
| CAGAATCATCATCATCATGG+AGG | 0.719272 | 1_1:+1664490 | None:intergenic |
| AACCTCAACTACTTCCAGTG+GGG | 0.733472 | 1_1:-1664517 | Msa0000500:CDS |
| TAACTGCGACAAGAAACTTG+TGG | 0.789334 | 1_1:+1657464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATAAAATAAAATATA+AGG | - | chr1_1:1661815-1661834 | Msa0000500:intron | 0.0% |
| !!! | TTTAAAAAAATTATTTTTTT+GGG | + | chr1_1:1662033-1662052 | None:intergenic | 0.0% |
| !!! | TAAAAATATTATATATTTTA+GGG | + | chr1_1:1662317-1662336 | None:intergenic | 0.0% |
| !!! | TTAAAAATATTATATATTTT+AGG | + | chr1_1:1662318-1662337 | None:intergenic | 0.0% |
| !!! | TAAAAATATTATATATTTTA+GGG | + | chr1_1:1662317-1662336 | None:intergenic | 0.0% |
| !!! | TTAAAAATATTATATATTTT+AGG | + | chr1_1:1662318-1662337 | None:intergenic | 0.0% |
| !!! | TAAAAATATTATATATTTTA+GGG | + | chr1_1:1662317-1662336 | None:intergenic | 0.0% |
| !!! | TTAAAAATATTATATATTTT+AGG | + | chr1_1:1662318-1662337 | None:intergenic | 0.0% |
| !! | TTTAAATAAAATAAAATATA+TGG | - | chr1_1:1661815-1661834 | Msa0000500:intron | 0.0% |
| !! | GCTAAAATAATAATAATAAT+TGG | - | chr1_1:1656717-1656736 | Msa0000500:CDS | 10.0% |
| !!! | TGTTTGTTATTAATAATTAA+TGG | - | chr1_1:1657306-1657325 | Msa0000500:intron | 10.0% |
| !! | AAATAAGTTATTTATCATTT+CGG | - | chr1_1:1660281-1660300 | Msa0000500:intron | 10.0% |
| !! | TGCAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:1661123-1661142 | Msa0000500:intron | 10.0% |
| !!! | TAGTGATTAAAAATTTTATA+GGG | - | chr1_1:1662214-1662233 | Msa0000500:intron | 10.0% |
| !! | AATAATATATTATGAAAAGT+TGG | - | chr1_1:1662373-1662392 | Msa0000500:intron | 10.0% |
| !! | AATAATATATTATGAAAAGT+TGG | - | chr1_1:1662373-1662392 | Msa0000500:intron | 10.0% |
| !! | AAATAAGAAAATCAAATATA+TGG | - | chr1_1:1662791-1662810 | Msa0000500:intron | 10.0% |
| !! | AAAAAAAAAAACTATGTATT+TGG | + | chr1_1:1662970-1662989 | None:intergenic | 10.0% |
| !! | TTATTTGTAATTAAAATTGA+TGG | - | chr1_1:1663740-1663759 | Msa0000500:intron | 10.0% |
| !!! | ATAATACAAAGTATAATTTT+CGG | + | chr1_1:1664209-1664228 | None:intergenic | 10.0% |
| !!! | TTTTTCTTACAAAAATAACA+GGG | + | chr1_1:1656695-1656714 | None:intergenic | 15.0% |
| !! | AATAATAATAATAATTGGAC+AGG | - | chr1_1:1656722-1656741 | Msa0000500:CDS | 15.0% |
| !! | AAAAACATTAATTATAATCG+AGG | - | chr1_1:1657169-1657188 | Msa0000500:intron | 15.0% |
| !!! | TCAAAAAGTTTGATTTTAAA+AGG | - | chr1_1:1657193-1657212 | Msa0000500:intron | 15.0% |
| !!! | TTTTTTCAAATTTCATGTAA+AGG | - | chr1_1:1657547-1657566 | Msa0000500:CDS | 15.0% |
| !! | AAACATTATAAACATTATTC+AGG | + | chr1_1:1657713-1657732 | None:intergenic | 15.0% |
| !! | AAATAGTTTAGTCATTTAAA+GGG | + | chr1_1:1658103-1658122 | None:intergenic | 15.0% |
| !! | AAAATAGTTTAGTCATTTAA+AGG | + | chr1_1:1658104-1658123 | None:intergenic | 15.0% |
| !! | ATTATAGAAGAAAATCAATT+TGG | + | chr1_1:1658399-1658418 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTAATTTGTTACT+TGG | + | chr1_1:1658788-1658807 | None:intergenic | 15.0% |
| !! | AAACAAAATAAATTGCTAAA+GGG | + | chr1_1:1659408-1659427 | None:intergenic | 15.0% |
| !! | ATAAAATTCAATCACATTTA+TGG | - | chr1_1:1659739-1659758 | Msa0000500:intron | 15.0% |
| !! | ATAATATGTTAAACAGATAA+AGG | - | chr1_1:1660013-1660032 | Msa0000500:intron | 15.0% |
| !! | TAATATGTTAAACAGATAAA+GGG | - | chr1_1:1660014-1660033 | Msa0000500:intron | 15.0% |
| !!! | TAGTATTTTGATACTTATAT+AGG | + | chr1_1:1661056-1661075 | None:intergenic | 15.0% |
| !! | ATAAAGTTAATAGCTTAAAT+TGG | + | chr1_1:1661162-1661181 | None:intergenic | 15.0% |
| !!! | CTTTAAAAATGAAAAGTAAA+AGG | - | chr1_1:1661477-1661496 | Msa0000500:intron | 15.0% |
| !!! | TTTCGAAAACATATATATTT+TGG | - | chr1_1:1661791-1661810 | Msa0000500:intron | 15.0% |
| !! | TACAAAATTAACATAAAAAC+AGG | - | chr1_1:1662182-1662201 | Msa0000500:intron | 15.0% |
| !! | ACAAAATTAACATAAAAACA+GGG | - | chr1_1:1662183-1662202 | Msa0000500:intron | 15.0% |
| !!! | AAATTTTTAATCACTACTTT+TGG | + | chr1_1:1662210-1662229 | None:intergenic | 15.0% |
| !!! | GTAGTGATTAAAAATTTTAT+AGG | - | chr1_1:1662213-1662232 | Msa0000500:intron | 15.0% |
| !!! | ATTTTTAAATTGCTTGAAAA+AGG | - | chr1_1:1662600-1662619 | Msa0000500:intron | 15.0% |
| !!! | TTTTTAAATTGCTTGAAAAA+GGG | - | chr1_1:1662601-1662620 | Msa0000500:intron | 15.0% |
| !!! | TTTCGAAAAATGATATATTT+TGG | - | chr1_1:1662670-1662689 | Msa0000500:intron | 15.0% |
| !!! | TTCGAAAAATGATATATTTT+GGG | - | chr1_1:1662671-1662690 | Msa0000500:intron | 15.0% |
| !!! | TGTTTCAAAAAGATATATTT+TGG | - | chr1_1:1662726-1662745 | Msa0000500:intron | 15.0% |
| !!! | GTTTCAAAAAGATATATTTT+GGG | - | chr1_1:1662727-1662746 | Msa0000500:intron | 15.0% |
| !!! | GTTTTGAAATTGTTTAAAAA+AGG | - | chr1_1:1662813-1662832 | Msa0000500:intron | 15.0% |
| !!! | TTTTGAAATTGTTTAGAAAA+AGG | - | chr1_1:1662871-1662890 | Msa0000500:intron | 15.0% |
| !!! | TTTAGAAAAAGGTAATATTT+TGG | - | chr1_1:1662882-1662901 | Msa0000500:intron | 15.0% |
| !!! | ATATGATTTTGAAATTGTTT+AGG | - | chr1_1:1661774-1661793 | Msa0000500:intron | 15.0% |
| !!! | TATGATTTTGAAATTGTTTA+GGG | - | chr1_1:1662866-1662885 | Msa0000500:intron | 15.0% |
| !!! | ACATTTAAGTTTAAAAATGA+GGG | + | chr1_1:1663140-1663159 | None:intergenic | 15.0% |
| !!! | TACATTTAAGTTTAAAAATG+AGG | + | chr1_1:1663141-1663160 | None:intergenic | 15.0% |
| !!! | TGTACTAATTTTTATAGAAA+TGG | + | chr1_1:1663340-1663359 | None:intergenic | 15.0% |
| !!! | TTTTACAAACACTTTAATTT+AGG | - | chr1_1:1664583-1664602 | Msa0000500:CDS | 15.0% |
| !!! | CTTTTTCTTACAAAAATAAC+AGG | + | chr1_1:1656696-1656715 | None:intergenic | 20.0% |
| !!! | ATTGCAAATGTTGATAAAAA+AGG | + | chr1_1:1657514-1657533 | None:intergenic | 20.0% |
| !! | AGTTAAATATTTATAGCGTT+TGG | - | chr1_1:1658734-1658753 | Msa0000500:intron | 20.0% |
| !! | ATTAATTTATTCTAACAGTC+CGG | - | chr1_1:1659001-1659020 | Msa0000500:intron | 20.0% |
| !! | ATGAAATATGAATTCAAGAA+AGG | + | chr1_1:1659112-1659131 | None:intergenic | 20.0% |
| !! | AACAAAATAAATTGCTAAAG+GGG | + | chr1_1:1659407-1659426 | None:intergenic | 20.0% |
| !! | GAAACAAAATAAATTGCTAA+AGG | + | chr1_1:1659409-1659428 | None:intergenic | 20.0% |
| !! | ACATATACTTAGTAGAAAAT+TGG | + | chr1_1:1659947-1659966 | None:intergenic | 20.0% |
| !! | TACAACAAAGTAAAATAGAA+GGG | + | chr1_1:1659971-1659990 | None:intergenic | 20.0% |
| !! | TTACAACAAAGTAAAATAGA+AGG | + | chr1_1:1659972-1659991 | None:intergenic | 20.0% |
| !!! | GTAGTTTAGAATAAGTTAAA+AGG | + | chr1_1:1660795-1660814 | None:intergenic | 20.0% |
| !! | TAAAACTTGTATCTATCTAA+AGG | - | chr1_1:1660945-1660964 | Msa0000500:intron | 20.0% |
| !! | TCATGTTAGAATATTAAAGT+TGG | + | chr1_1:1661410-1661429 | None:intergenic | 20.0% |
| !!! | AATGAAAATGAACTTTTATG+TGG | - | chr1_1:1661530-1661549 | Msa0000500:intron | 20.0% |
| !! | ATGATACCAATATAATGTAA+AGG | - | chr1_1:1661578-1661597 | Msa0000500:intron | 20.0% |
| !!! | ATTTTGAAATTGCTTCAAAA+TGG | - | chr1_1:1661722-1661741 | Msa0000500:intron | 20.0% |
| !!! | AAGTTGAAGAAAATTTTAGA+GGG | + | chr1_1:1661889-1661908 | None:intergenic | 20.0% |
| !!! | AAAGTTGAAGAAAATTTTAG+AGG | + | chr1_1:1661890-1661909 | None:intergenic | 20.0% |
| !! | TACATATGAGTTTACTTTAA+AGG | + | chr1_1:1661952-1661971 | None:intergenic | 20.0% |
| !!! | AAAAGTTGGTATATTTATAG+AGG | - | chr1_1:1662275-1662294 | Msa0000500:intron | 20.0% |
| !!! | AAAAGTTGGTATATTTATAG+AGG | - | chr1_1:1662275-1662294 | Msa0000500:intron | 20.0% |
| !!! | AAAAGTTGGTATATTTATAG+AGG | - | chr1_1:1662275-1662294 | Msa0000500:intron | 20.0% |
| !!! | ATGATTTTGAAATTGTTTAG+GGG | - | chr1_1:1662867-1662886 | Msa0000500:intron | 20.0% |
| !!! | TTTATTTTCGTATTGATCTA+AGG | - | chr1_1:1663250-1663269 | Msa0000500:intron | 20.0% |
| !! | CATAATATTAATCTCAACAT+TGG | + | chr1_1:1664178-1664197 | None:intergenic | 20.0% |
| !! | TTTTCTTCTTCTTAACCTTT+AGG | + | chr1_1:1656651-1656670 | None:intergenic | 25.0% |
| ! | TATATTGCAGTGATAGTATA+CGG | + | chr1_1:1657284-1657303 | None:intergenic | 25.0% |
| ! | AATATTACCTCTAAGTCTAA+GGG | + | chr1_1:1657490-1657509 | None:intergenic | 25.0% |
| ! | AAATATTACCTCTAAGTCTA+AGG | + | chr1_1:1657491-1657510 | None:intergenic | 25.0% |
| ! | CAAATTTCATGTAAAGGAAA+AGG | - | chr1_1:1657553-1657572 | Msa0000500:CDS | 25.0% |
| ! | GTTTAATGAGTAAATGACAA+TGG | + | chr1_1:1657765-1657784 | None:intergenic | 25.0% |
| ! | TCAAATTTCATTTACAGACA+AGG | + | chr1_1:1657830-1657849 | None:intergenic | 25.0% |
| ! | CATGCTACTAAATTGAATAA+AGG | + | chr1_1:1657881-1657900 | None:intergenic | 25.0% |
| ! | CTCTATATAATCTCATTTAG+AGG | + | chr1_1:1657941-1657960 | None:intergenic | 25.0% |
| !! | AATTTGATTTACATGAAGCA+TGG | - | chr1_1:1657963-1657982 | Msa0000500:intron | 25.0% |
| !! | TACAAATTTCTTGATAACTG+GGG | + | chr1_1:1658323-1658342 | None:intergenic | 25.0% |
| !! | CTACAAATTTCTTGATAACT+GGG | + | chr1_1:1658324-1658343 | None:intergenic | 25.0% |
| !! | TCTACAAATTTCTTGATAAC+TGG | + | chr1_1:1658325-1658344 | None:intergenic | 25.0% |
| ! | ATCCTCTATATATATTAAGC+AGG | - | chr1_1:1658434-1658453 | Msa0000500:intron | 25.0% |
| ! | TTCCTGCTTAATATATATAG+AGG | + | chr1_1:1658439-1658458 | None:intergenic | 25.0% |
| ! | TATATCAATGGCTTATATTG+AGG | + | chr1_1:1658979-1658998 | None:intergenic | 25.0% |
| !!! | AACTTTTTCATCATAAGATC+CGG | + | chr1_1:1659023-1659042 | None:intergenic | 25.0% |
| !!! | GTTACAAAGTGTTATTTTAG+TGG | - | chr1_1:1659043-1659062 | Msa0000500:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | - | chr1_1:1659054-1659073 | Msa0000500:intron | 25.0% |
| ! | TAGCACATTTCAAAATTACA+GGG | + | chr1_1:1659190-1659209 | None:intergenic | 25.0% |
| ! | ATAGCACATTTCAAAATTAC+AGG | + | chr1_1:1659191-1659210 | None:intergenic | 25.0% |
| ! | AATCTAATCGTAGAAAAAAG+TGG | - | chr1_1:1659266-1659285 | Msa0000500:intron | 25.0% |
| ! | AAAAAAGGCTAAGTATAGTT+TGG | + | chr1_1:1659320-1659339 | None:intergenic | 25.0% |
| !!! | TATACTTAGCCTTTTTTGAA+TGG | - | chr1_1:1659323-1659342 | Msa0000500:intron | 25.0% |
| ! | TAACATTTGCCATTCAAAAA+AGG | + | chr1_1:1659335-1659354 | None:intergenic | 25.0% |
| ! | ACAAAATAAATTGCTAAAGG+GGG | + | chr1_1:1659406-1659425 | None:intergenic | 25.0% |
| !!! | TATTTTGTTTCGATCAAAGT+AGG | - | chr1_1:1659418-1659437 | Msa0000500:intron | 25.0% |
| ! | AAATATCTGCAGAACAATAT+CGG | + | chr1_1:1659538-1659557 | None:intergenic | 25.0% |
| !! | GATATTTTTCGCTTATAGTA+AGG | - | chr1_1:1659551-1659570 | Msa0000500:intron | 25.0% |
| !! | ATTTTTGATATACTTTCGAC+AGG | + | chr1_1:1659721-1659740 | None:intergenic | 25.0% |
| ! | AATTCAATCACATTTATGGT+AGG | - | chr1_1:1659743-1659762 | Msa0000500:intron | 25.0% |
| ! | TCACAAATGTTCTTGTAAAA+AGG | + | chr1_1:1659905-1659924 | None:intergenic | 25.0% |
| ! | GAATTTACACAATAGCTTAT+TGG | + | chr1_1:1660248-1660267 | None:intergenic | 25.0% |
| ! | GTATTATTGCACTTTAAGTA+TGG | - | chr1_1:1660694-1660713 | Msa0000500:intron | 25.0% |
| !!! | CAACTTATTTTCTTCATTTC+CGG | - | chr1_1:1660880-1660899 | Msa0000500:intron | 25.0% |
| !!! | GATACAAGTTTTAACTGAAT+GGG | + | chr1_1:1660938-1660957 | None:intergenic | 25.0% |
| !!! | AGATACAAGTTTTAACTGAA+TGG | + | chr1_1:1660939-1660958 | None:intergenic | 25.0% |
| ! | GTAGTTCCTTTACATTATAT+TGG | + | chr1_1:1661587-1661606 | None:intergenic | 25.0% |
| !!! | TCATTAGCGGTTTTTTTTAA+TGG | + | chr1_1:1661609-1661628 | None:intergenic | 25.0% |
| !! | TGAAGATGGAAAATTTTTGA+GGG | + | chr1_1:1661917-1661936 | None:intergenic | 25.0% |
| !! | AAATTTTCCATCTTCACTTT+TGG | - | chr1_1:1661921-1661940 | Msa0000500:intron | 25.0% |
| !! | TATGAGTTTACTTTAAAGGA+GGG | + | chr1_1:1661948-1661967 | None:intergenic | 25.0% |
| !! | ATATGAGTTTACTTTAAAGG+AGG | + | chr1_1:1661949-1661968 | None:intergenic | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | - | chr1_1:1662229-1662248 | Msa0000500:intron | 25.0% |
| !!! | CTAGGAATTCTTTTTAGTTA+AGG | + | chr1_1:1663064-1663083 | None:intergenic | 25.0% |
| ! | ATTCTGATAAATCTAGAAAG+AGG | - | chr1_1:1663921-1663940 | Msa0000500:intron | 25.0% |
| ! | AATAAAGACGAATATAGCAA+TGG | + | chr1_1:1664108-1664127 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | - | chr1_1:1664138-1664157 | Msa0000500:CDS | 25.0% |
| ! | AAGAGATAAAGAAAAATACC+TGG | + | chr1_1:1664389-1664408 | None:intergenic | 25.0% |
| !!! | AAGCTGAAAAGTATTAGTTT+TGG | - | chr1_1:1664660-1664679 | Msa0000500:CDS | 25.0% |
| !!! | AGCTGAAAAGTATTAGTTTT+GGG | - | chr1_1:1664661-1664680 | Msa0000500:CDS | 25.0% |
| ! | AAACCTCTGAATCTCAATTT+TGG | - | chr1_1:1656852-1656871 | Msa0000500:intron | 30.0% |
| TCGCGAGTTTGATAAAATAA+AGG | - | chr1_1:1657226-1657245 | Msa0000500:intron | 30.0% | |
| CGCGAGTTTGATAAAATAAA+GGG | - | chr1_1:1657227-1657246 | Msa0000500:intron | 30.0% | |
| !! | ATTTGTTGCAGTTTTCTCTT+CGG | + | chr1_1:1657406-1657425 | None:intergenic | 30.0% |
| AAGAGAAAACTGCAACAAAT+TGG | - | chr1_1:1657406-1657425 | Msa0000500:intron | 30.0% | |
| TAAAACCACATGTTGTTAAG+TGG | + | chr1_1:1657461-1657480 | None:intergenic | 30.0% | |
| ! | TGATTTTGTTAGACGTAATG+CGG | + | chr1_1:1657667-1657686 | None:intergenic | 30.0% |
| TACGTCTAACAAAATCAAGA+CGG | - | chr1_1:1657670-1657689 | Msa0000500:intron | 30.0% | |
| AATTGCGTAGATATGAACAA+AGG | + | chr1_1:1657790-1657809 | None:intergenic | 30.0% | |
| GTTCATATCTACGCAATTAA+TGG | - | chr1_1:1657792-1657811 | Msa0000500:intron | 30.0% | |
| TCATTTACAGACAAGGAAAA+TGG | + | chr1_1:1657823-1657842 | None:intergenic | 30.0% | |
| !! | CCTTTCAAATTTGTTGAATG+AGG | + | chr1_1:1658055-1658074 | None:intergenic | 30.0% |
| CCTCATTCAACAAATTTGAA+AGG | - | chr1_1:1658052-1658071 | Msa0000500:intron | 30.0% | |
| ! | ATAATACACAGGACTTCTTT+TGG | - | chr1_1:1658372-1658391 | Msa0000500:intron | 30.0% |
| ! | TAATACACAGGACTTCTTTT+GGG | - | chr1_1:1658373-1658392 | Msa0000500:intron | 30.0% |
| AAAATAGTCACTCAATCAGA+AGG | - | chr1_1:1658457-1658476 | Msa0000500:intron | 30.0% | |
| ! | ATTGTTCTGTTACTTATGAG+TGG | + | chr1_1:1658488-1658507 | None:intergenic | 30.0% |
| ATTTGTATGTTTGCATCATC+AGG | + | chr1_1:1658640-1658659 | None:intergenic | 30.0% | |
| !!! | ACGATATTGATTCCCAATTT+TGG | + | chr1_1:1658679-1658698 | None:intergenic | 30.0% |
| TAAAAGTCTACAGAAGAGAA+GGG | + | chr1_1:1658839-1658858 | None:intergenic | 30.0% | |
| TTAAAAGTCTACAGAAGAGA+AGG | + | chr1_1:1658840-1658859 | None:intergenic | 30.0% | |
| ! | TTGATGCTATGTTTTCTTGA+AGG | - | chr1_1:1658907-1658926 | Msa0000500:intron | 30.0% |
| ! | GTAAGTTGAAGCAATGTATT+TGG | + | chr1_1:1658952-1658971 | None:intergenic | 30.0% |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | - | chr1_1:1659053-1659072 | Msa0000500:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | - | chr1_1:1659055-1659074 | Msa0000500:intron | 30.0% |
| !! | ATTTGGTGGTGTAAACTAAA+TGG | - | chr1_1:1659084-1659103 | Msa0000500:intron | 30.0% |
| !! | TAGTCTTTTTCATGACTCTT+CGG | - | chr1_1:1659493-1659512 | Msa0000500:intron | 30.0% |
| CTGACTATTTACGTCAAATT+AGG | + | chr1_1:1659597-1659616 | None:intergenic | 30.0% | |
| CTAATTTGACGTAAATAGTC+AGG | - | chr1_1:1659595-1659614 | Msa0000500:intron | 30.0% | |
| ! | TTCTTGTAAAAAGGAGCTTT+TGG | + | chr1_1:1659896-1659915 | None:intergenic | 30.0% |
| TTTACAAGAACATTTGTGAG+AGG | - | chr1_1:1659906-1659925 | Msa0000500:intron | 30.0% | |
| AGATAAAGGGAATGTTCAAA+TGG | - | chr1_1:1660027-1660046 | Msa0000500:intron | 30.0% | |
| CTATATACGTAACTACTTCA+TGG | + | chr1_1:1660068-1660087 | None:intergenic | 30.0% | |
| AGTTACGTATATAGAGATTG+CGG | - | chr1_1:1660074-1660093 | Msa0000500:intron | 30.0% | |
| !! | TATTCATCAAGTTGATGCAA+AGG | - | chr1_1:1660133-1660152 | Msa0000500:intron | 30.0% |
| AACATTCACGTATCAGAAAT+TGG | + | chr1_1:1660196-1660215 | None:intergenic | 30.0% | |
| ATGAATAACCTTTACGTTGT+AGG | - | chr1_1:1660336-1660355 | Msa0000500:intron | 30.0% | |
| AGCATTTCTTTGATGAAGTT+GGG | + | chr1_1:1660455-1660474 | None:intergenic | 30.0% | |
| AAGCATTTCTTTGATGAAGT+TGG | + | chr1_1:1660456-1660475 | None:intergenic | 30.0% | |
| TCTGAATCAGGTTATGAATA+AGG | + | chr1_1:1660634-1660653 | None:intergenic | 30.0% | |
| TTAAGTATGGAATGTGATTC+TGG | - | chr1_1:1660707-1660726 | Msa0000500:intron | 30.0% | |
| TTCCATCTAAATAGCTGTAA+AGG | - | chr1_1:1660737-1660756 | Msa0000500:intron | 30.0% | |
| TTCCTTTACAGCTATTTAGA+TGG | + | chr1_1:1660742-1660761 | None:intergenic | 30.0% | |
| TTGTATCTATCTAAAGGAGT+TGG | - | chr1_1:1660951-1660970 | Msa0000500:intron | 30.0% | |
| AAATTCTACAAAACTCGTCT+GGG | + | chr1_1:1661033-1661052 | None:intergenic | 30.0% | |
| TAAAGAATTAGTATCCCTTG+CGG | + | chr1_1:1661462-1661481 | None:intergenic | 30.0% | |
| ! | CAGTTCATTTTCATCATTAG+CGG | + | chr1_1:1661622-1661641 | None:intergenic | 30.0% |
| !!! | GCGTTAGTGGTTTTTTTTTA+AGG | - | chr1_1:1661659-1661678 | Msa0000500:intron | 30.0% |
| ! | GCTTCAAAATGGATGTATTT+TGG | - | chr1_1:1661733-1661752 | Msa0000500:intron | 30.0% |
| ACGAAAAGTTGACACATTTA+TGG | + | chr1_1:1661860-1661879 | None:intergenic | 30.0% | |
| ! | GTGAAGATGGAAAATTTTTG+AGG | + | chr1_1:1661918-1661937 | None:intergenic | 30.0% |
| AAGTTGAAGGAAAACTTTAG+AGG | - | chr1_1:1662242-1662261 | Msa0000500:intron | 30.0% | |
| AGTTGAAGGAAAACTTTAGA+GGG | - | chr1_1:1662243-1662262 | Msa0000500:intron | 30.0% | |
| TCTCTCTCTGATTATTAACT+TGG | - | chr1_1:1663086-1663105 | Msa0000500:intron | 30.0% | |
| ! | TTTCGTATTGATCTAAGGAA+AGG | - | chr1_1:1663255-1663274 | Msa0000500:intron | 30.0% |
| ! | TTCGTATTGATCTAAGGAAA+GGG | - | chr1_1:1663256-1663275 | Msa0000500:intron | 30.0% |
| AATCGGTAAATAAAACACAG+TGG | + | chr1_1:1663293-1663312 | None:intergenic | 30.0% | |
| CATGAAAATTGAAGGGAAAT+CGG | + | chr1_1:1663310-1663329 | None:intergenic | 30.0% | |
| ! | TTTCTTTGCATTCTTTTGTG+AGG | - | chr1_1:1663433-1663452 | Msa0000500:intron | 30.0% |
| ! | TTCTTTGCATTCTTTTGTGA+GGG | - | chr1_1:1663434-1663453 | Msa0000500:intron | 30.0% |
| ! | TTTTCGCTAGTGAAACATAA+GGG | + | chr1_1:1663527-1663546 | None:intergenic | 30.0% |
| CAATAAAAAGAGCAGAAAGA+CGG | + | chr1_1:1663567-1663586 | None:intergenic | 30.0% | |
| !! | AATCACTATGATAGTGGAAA+TGG | - | chr1_1:1663875-1663894 | Msa0000500:intron | 30.0% |
| TGATAAATCTAGAAAGAGGA+AGG | - | chr1_1:1663925-1663944 | Msa0000500:intron | 30.0% | |
| AAACTTGTGGTGTAAGTTAT+CGG | + | chr1_1:1663999-1664018 | None:intergenic | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | - | chr1_1:1664293-1664312 | Msa0000500:intron | 30.0% |
| ATCAAGTTAAGAATCTTCTG+TGG | + | chr1_1:1664324-1664343 | None:intergenic | 30.0% | |
| GAATGCTGAAAATCTTACAA+AGG | - | chr1_1:1664344-1664363 | Msa0000500:intron | 30.0% | |
| AAATCTTACAAAGGAACATG+TGG | - | chr1_1:1664353-1664372 | Msa0000500:intron | 30.0% | |
| TAAAGAAAAATACCTGGAGA+TGG | + | chr1_1:1664383-1664402 | None:intergenic | 30.0% | |
| !!! | GCTGAAAAGTATTAGTTTTG+GGG | - | chr1_1:1664662-1664681 | Msa0000500:CDS | 30.0% |
| GGAAAACCAAAAAGCTAATA+TGG | - | chr1_1:1664683-1664702 | Msa0000500:CDS | 30.0% | |
| AAACCAAAAAGCTAATATGG+TGG | - | chr1_1:1664686-1664705 | Msa0000500:CDS | 30.0% | |
| AATATGGTGGCAAATTTAGT+TGG | - | chr1_1:1664699-1664718 | Msa0000500:CDS | 30.0% | |
| AAATTGGCATTCTTTGAACA+TGG | + | chr1_1:1664786-1664805 | None:intergenic | 30.0% | |
| TAATTGGACAGGAACAAGAT+TGG | - | chr1_1:1656733-1656752 | Msa0000500:CDS | 35.0% | |
| AAACGCGATGATGATATTGA+TGG | + | chr1_1:1656917-1656936 | None:intergenic | 35.0% | |
| ! | TTTTCTCTTCGGATGACAAA+GGG | + | chr1_1:1657395-1657414 | None:intergenic | 35.0% |
| ACAAATTGGCAAAAGCAGTT+AGG | - | chr1_1:1657420-1657439 | Msa0000500:intron | 35.0% | |
| ACGTCTAACAAAATCAAGAC+GGG | - | chr1_1:1657671-1657690 | Msa0000500:intron | 35.0% | |
| ! | TGAAAACCCCTCTATGTTTT+AGG | - | chr1_1:1657847-1657866 | Msa0000500:intron | 35.0% |
| ! | GAAAACCCCTCTATGTTTTA+GGG | - | chr1_1:1657848-1657867 | Msa0000500:intron | 35.0% |
| !! | AAAACCCCTCTATGTTTTAG+GGG | - | chr1_1:1657849-1657868 | Msa0000500:intron | 35.0% |
| AAAAGCCCCTAAAACATAGA+GGG | + | chr1_1:1657857-1657876 | None:intergenic | 35.0% | |
| TAAAAGCCCCTAAAACATAG+AGG | + | chr1_1:1657858-1657877 | None:intergenic | 35.0% | |
| TTGATTTACATGAAGCATGG+TGG | - | chr1_1:1657966-1657985 | Msa0000500:intron | 35.0% | |
| AGTAAATTCTACAGCATGCA+GGG | + | chr1_1:1658272-1658291 | None:intergenic | 35.0% | |
| ! | TCTTGATAACTGGGGATTAA+TGG | + | chr1_1:1658315-1658334 | None:intergenic | 35.0% |
| AGACTCATTTATGTCAACTC+AGG | - | chr1_1:1658342-1658361 | Msa0000500:intron | 35.0% | |
| CAGGATTGTGTATAATACAC+AGG | - | chr1_1:1658361-1658380 | Msa0000500:intron | 35.0% | |
| ATCATATCCAAACTAGTGGA+GGG | + | chr1_1:1658616-1658635 | None:intergenic | 35.0% | |
| AATCATATCCAAACTAGTGG+AGG | + | chr1_1:1658617-1658636 | None:intergenic | 35.0% | |
| AGGAATCATATCCAAACTAG+TGG | + | chr1_1:1658620-1658639 | None:intergenic | 35.0% | |
| TGACATCACTACACCAAAAT+TGG | - | chr1_1:1658663-1658682 | Msa0000500:intron | 35.0% | |
| GACATCACTACACCAAAATT+GGG | - | chr1_1:1658664-1658683 | Msa0000500:intron | 35.0% | |
| TTACAGCAGTATATCATGAG+CGG | + | chr1_1:1658876-1658895 | None:intergenic | 35.0% | |
| ATATACTGCTGTAAACTCTG+TGG | - | chr1_1:1658882-1658901 | Msa0000500:intron | 35.0% | |
| CTTGAAGGCAAATGATAGTT+TGG | - | chr1_1:1658922-1658941 | Msa0000500:intron | 35.0% | |
| AGTTGAAGCAATGTATTTGG+TGG | + | chr1_1:1658949-1658968 | None:intergenic | 35.0% | |
| ATCAATGGCTTATATTGAGG+TGG | + | chr1_1:1658976-1658995 | None:intergenic | 35.0% | |
| AGACAGACCATAGTAAGATT+TGG | - | chr1_1:1659232-1659251 | Msa0000500:intron | 35.0% | |
| ! | AGACCATAGTAAGATTTGGT+GGG | - | chr1_1:1659236-1659255 | Msa0000500:intron | 35.0% |
| ATTCCCACCAAATCTTACTA+TGG | + | chr1_1:1659242-1659261 | None:intergenic | 35.0% | |
| TAGAAAAAAGTGGTGCAAGT+TGG | - | chr1_1:1659276-1659295 | Msa0000500:intron | 35.0% | |
| !! | TATCAACTGGTTTGAGCTAA+GGG | + | chr1_1:1659378-1659397 | None:intergenic | 35.0% |
| ATAAATTGCTAAAGGGGGTT+GGG | + | chr1_1:1659401-1659420 | None:intergenic | 35.0% | |
| AATAAATTGCTAAAGGGGGT+TGG | + | chr1_1:1659402-1659421 | None:intergenic | 35.0% | |
| TGTTTCGATCAAAGTAGGAT+AGG | - | chr1_1:1659423-1659442 | Msa0000500:intron | 35.0% | |
| ! | TGGTTAGTTACATAGTCCTA+AGG | + | chr1_1:1659693-1659712 | None:intergenic | 35.0% |
| TTTGATATACTTTCGACAGG+CGG | + | chr1_1:1659718-1659737 | None:intergenic | 35.0% | |
| TTCGGTATCAACACCAAATT+TGG | - | chr1_1:1660299-1660318 | Msa0000500:intron | 35.0% | |
| ! | AAACGAAAGCACACCAAATT+TGG | + | chr1_1:1660315-1660334 | None:intergenic | 35.0% |
| TTCTTTGATGAAGTTGGGAT+GGG | + | chr1_1:1660450-1660469 | None:intergenic | 35.0% | |
| TTTCTTTGATGAAGTTGGGA+TGG | + | chr1_1:1660451-1660470 | None:intergenic | 35.0% | |
| AATAGTGCAGCAGTTGTTAT+TGG | - | chr1_1:1660501-1660520 | Msa0000500:intron | 35.0% | |
| !! | TATCGACCACACTATTTCTA+GGG | - | chr1_1:1660584-1660603 | Msa0000500:intron | 35.0% |
| ATTCTCTCTGTATCTGAATC+AGG | + | chr1_1:1660646-1660665 | None:intergenic | 35.0% | |
| TACCTCAACGAAGAATAACA+GGG | + | chr1_1:1660677-1660696 | None:intergenic | 35.0% | |
| ATACCTCAACGAAGAATAAC+AGG | + | chr1_1:1660678-1660697 | None:intergenic | 35.0% | |
| CTAGAGATGACATTAGATTC+TGG | - | chr1_1:1660976-1660995 | Msa0000500:intron | 35.0% | |
| GAAATTCTACAAAACTCGTC+TGG | + | chr1_1:1661034-1661053 | None:intergenic | 35.0% | |
| AAGTAAAAGGAACTGTTACG+TGG | - | chr1_1:1661490-1661509 | Msa0000500:intron | 35.0% | |
| GAGGGACTAAAATGAAAAGT+TGG | - | chr1_1:1662261-1662280 | Msa0000500:intron | 35.0% | |
| AATAATCAGAGAGAGAGACT+AGG | + | chr1_1:1663082-1663101 | None:intergenic | 35.0% | |
| ! | ATTATTAACTTGGCTAGCAC+CGG | - | chr1_1:1663096-1663115 | Msa0000500:intron | 35.0% |
| CCTCTAAGTGCAAAAAACAT+AGG | + | chr1_1:1663169-1663188 | None:intergenic | 35.0% | |
| !!! | CCTATGTTTTTTGCACTTAG+AGG | - | chr1_1:1663166-1663185 | Msa0000500:intron | 35.0% |
| !!! | ACTTTGTTTTCTGCACTTAG+AGG | - | chr1_1:1663196-1663215 | Msa0000500:intron | 35.0% |
| ! | CGATTTCCCTTCAATTTTCA+TGG | - | chr1_1:1663308-1663327 | Msa0000500:intron | 35.0% |
| CACGTACCATGAAAATTGAA+GGG | + | chr1_1:1663317-1663336 | None:intergenic | 35.0% | |
| ! | CTTTTCGCTAGTGAAACATA+AGG | + | chr1_1:1663528-1663547 | None:intergenic | 35.0% |
| ATGTTTCACTAGCGAAAAGA+CGG | - | chr1_1:1663529-1663548 | Msa0000500:intron | 35.0% | |
| ! | AAACACCCTTTCAGCTTTTT+GGG | + | chr1_1:1663790-1663809 | None:intergenic | 35.0% |
| ! | AAAACACCCTTTCAGCTTTT+TGG | + | chr1_1:1663791-1663810 | None:intergenic | 35.0% |
| AGAAGCAATCACTATGATAG+TGG | - | chr1_1:1663869-1663888 | Msa0000500:intron | 35.0% | |
| AAGAGGAAGGATAAGAATGA+TGG | - | chr1_1:1663938-1663957 | Msa0000500:intron | 35.0% | |
| CTTGTCGCAGTTAATCAATT+TGG | - | chr1_1:1664019-1664038 | Msa0000500:CDS | 35.0% | |
| ! | TTTTTGCACATTGAAAACCG+AGG | + | chr1_1:1664063-1664082 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | - | chr1_1:1664298-1664317 | Msa0000500:intron | 35.0% |
| ATATCTTGCATCGTCTATGT+CGG | + | chr1_1:1664444-1664463 | None:intergenic | 35.0% | |
| !!! | TTGCCACCATATTAGCTTTT+TGG | + | chr1_1:1664692-1664711 | None:intergenic | 35.0% |
| ! | TGGTTCTGTTACATTTCAAC+CGG | - | chr1_1:1664722-1664741 | Msa0000500:exon | 35.0% |
| TGAGATGCTACAGAAGAAAT+TGG | + | chr1_1:1664802-1664821 | None:intergenic | 35.0% | |
| CTGCCAAAATTGAGATTCAG+AGG | + | chr1_1:1656858-1656877 | None:intergenic | 40.0% | |
| AATCATCATCATCATGGAGG+TGG | + | chr1_1:1656983-1657002 | None:intergenic | 40.0% | |
| CAGAATCATCATCATCATGG+AGG | + | chr1_1:1656986-1657005 | None:intergenic | 40.0% | |
| CAGCAGAATCATCATCATCA+TGG | + | chr1_1:1656989-1657008 | None:intergenic | 40.0% | |
| ACAGTAGCAGATAACACTTC+TGG | + | chr1_1:1657336-1657355 | None:intergenic | 40.0% | |
| TTTCTCTTCGGATGACAAAG+GGG | + | chr1_1:1657394-1657413 | None:intergenic | 40.0% | |
| ! | GTTTTCTCTTCGGATGACAA+AGG | + | chr1_1:1657396-1657415 | None:intergenic | 40.0% |
| ACTTCTACCCTTAGACTTAG+AGG | - | chr1_1:1657480-1657499 | Msa0000500:CDS | 40.0% | |
| AAAGCCCCTAAAACATAGAG+GGG | + | chr1_1:1657856-1657875 | None:intergenic | 40.0% | |
| CATGTCACTAAGTATGCTTG+TGG | - | chr1_1:1657897-1657916 | Msa0000500:intron | 40.0% | |
| AGATAGCGCCTAAAGACATA+TGG | - | chr1_1:1658007-1658026 | Msa0000500:intron | 40.0% | |
| CTCGATGACCATATGTCTTT+AGG | + | chr1_1:1658018-1658037 | None:intergenic | 40.0% | |
| ATATGGTCATCGAGAGTCAA+TGG | - | chr1_1:1658024-1658043 | Msa0000500:intron | 40.0% | |
| ATTGCTACCTTCTCTTCACT+AGG | - | chr1_1:1658197-1658216 | Msa0000500:intron | 40.0% | |
| AGAATCACCTAGTGAAGAGA+AGG | + | chr1_1:1658207-1658226 | None:intergenic | 40.0% | |
| AGCCATGTATATGTGTGTTC+AGG | - | chr1_1:1658243-1658262 | Msa0000500:intron | 40.0% | |
| CACCTGAACACACATATACA+TGG | + | chr1_1:1658248-1658267 | None:intergenic | 40.0% | |
| CATGTATATGTGTGTTCAGG+TGG | - | chr1_1:1658246-1658265 | Msa0000500:intron | 40.0% | |
| CAGTAAATTCTACAGCATGC+AGG | + | chr1_1:1658273-1658292 | None:intergenic | 40.0% | |
| CAACAATGACATTCATGCTC+CGG | - | chr1_1:1658805-1658824 | Msa0000500:intron | 40.0% | |
| GAAGAGAAGGGATAAAAGTC+CGG | + | chr1_1:1658827-1658846 | None:intergenic | 40.0% | |
| TATCATGAGCGGAAAAGGAA+TGG | + | chr1_1:1658865-1658884 | None:intergenic | 40.0% | |
| CAGTATATCATGAGCGGAAA+AGG | + | chr1_1:1658870-1658889 | None:intergenic | 40.0% | |
| ! | GTAAGTTGGGGCATTCTATT+TGG | - | chr1_1:1659067-1659086 | Msa0000500:intron | 40.0% |
| CTTACTATGGTCTGTCTACA+AGG | + | chr1_1:1659229-1659248 | None:intergenic | 40.0% | |
| CAGACCATAGTAAGATTTGG+TGG | - | chr1_1:1659235-1659254 | Msa0000500:intron | 40.0% | |
| !! | GTATCAACTGGTTTGAGCTA+AGG | + | chr1_1:1659379-1659398 | None:intergenic | 40.0% |
| ! | GAAGGCATGAAGTAAATCAC+AGG | + | chr1_1:1659665-1659684 | None:intergenic | 40.0% |
| TTCATGCCTTCATCAACCTT+AGG | - | chr1_1:1659674-1659693 | Msa0000500:intron | 40.0% | |
| !! | CATAGTCCTAAGGTTGATGA+AGG | + | chr1_1:1659683-1659702 | None:intergenic | 40.0% |
| CAATGCTACTCCATTCTCAT+AGG | - | chr1_1:1659799-1659818 | Msa0000500:intron | 40.0% | |
| CTTGATAGAGCCTATGAGAA+TGG | + | chr1_1:1659812-1659831 | None:intergenic | 40.0% | |
| TATTGGTCACATCGTAGACA+AGG | + | chr1_1:1660231-1660250 | None:intergenic | 40.0% | |
| AGAAGTTGCCTACAACGTAA+AGG | + | chr1_1:1660347-1660366 | None:intergenic | 40.0% | |
| TGCAGGAAGTCTATACTGAT+GGG | + | chr1_1:1660387-1660406 | None:intergenic | 40.0% | |
| GTGAAAGTTGGAAGCTAACA+AGG | - | chr1_1:1660410-1660429 | Msa0000500:intron | 40.0% | |
| ! | GTATCGACCACACTATTTCT+AGG | - | chr1_1:1660583-1660602 | Msa0000500:intron | 40.0% |
| !! | ATCGACCACACTATTTCTAG+GGG | - | chr1_1:1660585-1660604 | Msa0000500:intron | 40.0% |
| TTCCCTGTTATTCTTCGTTG+AGG | - | chr1_1:1660672-1660691 | Msa0000500:intron | 40.0% | |
| !!! | TGCGGTTAGAATCGGTTTTT+TGG | + | chr1_1:1661444-1661463 | None:intergenic | 40.0% |
| ! | AAAAACCGATTCTAACCGCA+AGG | - | chr1_1:1661444-1661463 | Msa0000500:intron | 40.0% |
| ! | AAAACCGATTCTAACCGCAA+GGG | - | chr1_1:1661445-1661464 | Msa0000500:intron | 40.0% |
| AAAAAACCACTAACGCCTAG+TGG | + | chr1_1:1661655-1661674 | None:intergenic | 40.0% | |
| GCACGTACCATGAAAATTGA+AGG | + | chr1_1:1663318-1663337 | None:intergenic | 40.0% | |
| AGTCAACCCAAAAAGCTGAA+AGG | - | chr1_1:1663781-1663800 | Msa0000500:intron | 40.0% | |
| GTCAACCCAAAAAGCTGAAA+GGG | - | chr1_1:1663782-1663801 | Msa0000500:intron | 40.0% | |
| TAACTGCGACAAGAAACTTG+TGG | + | chr1_1:1664012-1664031 | None:intergenic | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | + | chr1_1:1664242-1664261 | None:intergenic | 40.0% |
| ATGGTGGCAAATTTAGTTGG+TGG | - | chr1_1:1664702-1664721 | Msa0000500:CDS | 40.0% | |
| !! | TCTTTGAACATGGTTCGGTT+TGG | + | chr1_1:1664776-1664795 | None:intergenic | 40.0% |
| GGCATTCTTTGAACATGGTT+CGG | + | chr1_1:1664781-1664800 | None:intergenic | 40.0% | |
| GCGTCACAGCAGAATGATTT+GGG | + | chr1_1:1656818-1656837 | None:intergenic | 45.0% | |
| TGCGTCACAGCAGAATGATT+TGG | + | chr1_1:1656819-1656838 | None:intergenic | 45.0% | |
| !! | CTCAATTTTGGCAGAGACAG+AGG | - | chr1_1:1656864-1656883 | Msa0000500:intron | 45.0% |
| ! | ATCATCGCGTTTTGCCATTG+CGG | - | chr1_1:1656925-1656944 | Msa0000500:intron | 45.0% |
| TCAACCTCAACTACTTCCAG+TGG | - | chr1_1:1656954-1656973 | Msa0000500:intron | 45.0% | |
| CAACCTCAACTACTTCCAGT+GGG | - | chr1_1:1656955-1656974 | Msa0000500:intron | 45.0% | |
| AACCTCAACTACTTCCAGTG+GGG | - | chr1_1:1656956-1656975 | Msa0000500:intron | 45.0% | |
| CACACATCATTCCACGAACA+TGG | + | chr1_1:1657019-1657038 | None:intergenic | 45.0% | |
| TGTTCGTGGAATGATGTGTG+AGG | - | chr1_1:1657019-1657038 | Msa0000500:intron | 45.0% | |
| GTTCGTGGAATGATGTGTGA+GGG | - | chr1_1:1657020-1657039 | Msa0000500:intron | 45.0% | |
| TTCGGATGACAAAGGGGAAA+GGG | + | chr1_1:1657388-1657407 | None:intergenic | 45.0% | |
| GCACACCACTTAACAACATG+TGG | - | chr1_1:1657453-1657472 | Msa0000500:CDS | 45.0% | |
| !! | AAGCATGGTGGATTAAGTGC+AGG | - | chr1_1:1657978-1657997 | Msa0000500:intron | 45.0% |
| ! | TGGAGGGAGAAAGTGTAAAC+AGG | + | chr1_1:1658600-1658619 | None:intergenic | 45.0% |
| ACTTTCTCCCTCCACTAGTT+TGG | - | chr1_1:1658606-1658625 | Msa0000500:intron | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | - | chr1_1:1659070-1659089 | Msa0000500:intron | 45.0% |
| ! | GCAAGTTGGACCTATCTAGT+TGG | - | chr1_1:1659290-1659309 | Msa0000500:intron | 45.0% |
| AGTTGGACCTATCTAGTTGG+TGG | - | chr1_1:1659293-1659312 | Msa0000500:intron | 45.0% | |
| GTTTGGACCACCAACTAGAT+AGG | + | chr1_1:1659303-1659322 | None:intergenic | 45.0% | |
| TGAGCTAAGGGATAAGGAGT+TGG | + | chr1_1:1659366-1659385 | None:intergenic | 45.0% | |
| ! | CTGGTTTGAGCTAAGGGATA+AGG | + | chr1_1:1659372-1659391 | None:intergenic | 45.0% |
| !!! | CAGGCATTTTTAGCTGCTGA+AGG | - | chr1_1:1659614-1659633 | Msa0000500:intron | 45.0% |
| TCAAGATGCAGAGATACAGC+AGG | - | chr1_1:1659827-1659846 | Msa0000500:intron | 45.0% | |
| ACGTATATAGAGATTGCGGC+AGG | - | chr1_1:1660078-1660097 | Msa0000500:intron | 45.0% | |
| TGATGGGACATCTGAGTTAC+TGG | + | chr1_1:1660371-1660390 | None:intergenic | 45.0% | |
| CTGCAGGAAGTCTATACTGA+TGG | + | chr1_1:1660388-1660407 | None:intergenic | 45.0% | |
| TTGATGAAGTTGGGATGGGA+GGG | + | chr1_1:1660446-1660465 | None:intergenic | 45.0% | |
| TTTGATGAAGTTGGGATGGG+AGG | + | chr1_1:1660447-1660466 | None:intergenic | 45.0% | |
| TGCATCCCCTAGAAATAGTG+TGG | + | chr1_1:1660593-1660612 | None:intergenic | 45.0% | |
| TCCGGCTAAACAATTGTGCT+TGG | - | chr1_1:1660898-1660917 | Msa0000500:intron | 45.0% | |
| CCCAAGCACAATTGTTTAGC+CGG | + | chr1_1:1660902-1660921 | None:intergenic | 45.0% | |
| CCGGCTAAACAATTGTGCTT+GGG | - | chr1_1:1660899-1660918 | Msa0000500:intron | 45.0% | |
| ! | AAACTCGTCTGGGTTAGAGT+AGG | + | chr1_1:1661023-1661042 | None:intergenic | 45.0% |
| GTATCCCTTGCGGTTAGAAT+CGG | + | chr1_1:1661452-1661471 | None:intergenic | 45.0% | |
| GTTGACAGTACGTTCTTCCT+CGG | - | chr1_1:1664043-1664062 | Msa0000500:CDS | 45.0% | |
| GAAAAATACCTGGAGATGGC+TGG | + | chr1_1:1664379-1664398 | None:intergenic | 45.0% | |
| GACGATGCAAGATATGACAC+TGG | - | chr1_1:1664449-1664468 | Msa0000500:CDS | 45.0% | |
| GTCAGACACTAGACACATCT+TGG | - | chr1_1:1664544-1664563 | Msa0000500:CDS | 45.0% | |
| !! | ATAAATTAATAATATATCAA+TGG | + | chr1_1:1658991-1659010 | None:intergenic | 5.0% |
| !!! | GTTTAAAAAAATTATTTTTT+TGG | + | chr1_1:1662034-1662053 | None:intergenic | 5.0% |
| !!! | TATGAATTTTTATATTTTTA+TGG | - | chr1_1:1662069-1662088 | Msa0000500:intron | 5.0% |
| !!! | ATTCAAAAAATAATATATTT+TGG | - | chr1_1:1662554-1662573 | Msa0000500:intron | 5.0% |
| !! | TTTAAATAAAATCAAATATA+TGG | - | chr1_1:1661757-1661776 | Msa0000500:intron | 5.0% |
| !! | TTCAAATAAAATTAAATATA+TGG | - | chr1_1:1662750-1662769 | Msa0000500:intron | 5.0% |
| !! | TTTAAATAAAATCAAATATA+TGG | - | chr1_1:1661757-1661776 | Msa0000500:intron | 5.0% |
| !!! | GTTTTTTTTTTTTTTAAAAA+AGG | - | chr1_1:1662978-1662997 | Msa0000500:intron | 5.0% |
| GAGGTTGAACAACACCGCAA+TGG | + | chr1_1:1656942-1656961 | None:intergenic | 50.0% | |
| GCTGTTGTTCTCCATGTTCG+TGG | - | chr1_1:1657005-1657024 | Msa0000500:intron | 50.0% | |
| CTTCGGATGACAAAGGGGAA+AGG | + | chr1_1:1657389-1657408 | None:intergenic | 50.0% | |
| ! | AAATCAAGACGGGCTCTCTG+CGG | - | chr1_1:1657681-1657700 | Msa0000500:intron | 50.0% |
| CTTCACTAGGTGATTCTCCG+AGG | - | chr1_1:1658210-1658229 | Msa0000500:intron | 50.0% | |
| GGTGATTCTCCGAGGTTACT+TGG | - | chr1_1:1658218-1658237 | Msa0000500:intron | 50.0% | |
| CATGGCTCTCCAAGTAACCT+CGG | + | chr1_1:1658230-1658249 | None:intergenic | 50.0% | |
| TACTGCCAGGAGAAGGTAAG+GGG | + | chr1_1:1658554-1658573 | None:intergenic | 50.0% | |
| GTACTGCCAGGAGAAGGTAA+GGG | + | chr1_1:1658555-1658574 | None:intergenic | 50.0% | |
| AGTACTGCCAGGAGAAGGTA+AGG | + | chr1_1:1658556-1658575 | None:intergenic | 50.0% | |
| AATGCAGTACTGCCAGGAGA+AGG | + | chr1_1:1658561-1658580 | None:intergenic | 50.0% | |
| TGTCTCAATGCAGTACTGCC+AGG | + | chr1_1:1658567-1658586 | None:intergenic | 50.0% | |
| AAAGGGGGTTGGGTATCAAC+TGG | + | chr1_1:1659391-1659410 | None:intergenic | 50.0% | |
| TATACTTTCGACAGGCGGCT+TGG | + | chr1_1:1659713-1659732 | None:intergenic | 50.0% | |
| CTTCCTGCAGCTGTGAAAGT+TGG | - | chr1_1:1660398-1660417 | Msa0000500:intron | 50.0% | |
| CTTCCAACTTTCACAGCTGC+AGG | + | chr1_1:1660404-1660423 | None:intergenic | 50.0% | |
| TGATGAAGTTGGGATGGGAG+GGG | + | chr1_1:1660445-1660464 | None:intergenic | 50.0% | |
| GGAGGGACCAAAAGTGAAGA+TGG | + | chr1_1:1661931-1661950 | None:intergenic | 50.0% | |
| GACATACCTTCTCTCGTGAC+CGG | + | chr1_1:1663118-1663137 | None:intergenic | 50.0% | |
| ! | AGAAGAAGCCTCGAGTTGCT+TGG | - | chr1_1:1663972-1663991 | Msa0000500:intron | 50.0% |
| TTATCGGACCAAGCAACTCG+AGG | + | chr1_1:1663983-1664002 | None:intergenic | 50.0% | |
| ! | CAACCGGCTTACGTTTCAAC+CGG | - | chr1_1:1664738-1664757 | Msa0000500:five_prime_UTR | 50.0% |
| TGAGCTTCAGCAGCTGCTGT+TGG | + | chr1_1:1656893-1656912 | None:intergenic | 55.0% | |
| GTCCCCACTGGAAGTAGTTG+AGG | + | chr1_1:1656961-1656980 | None:intergenic | 55.0% | |
| ! | AATCAAGACGGGCTCTCTGC+GGG | - | chr1_1:1657682-1657701 | Msa0000500:intron | 55.0% |
| CGTAGACAAGGTCGTGCACT+AGG | + | chr1_1:1660219-1660238 | None:intergenic | 55.0% | |
| CAGGAACCACTAGGCGTTAG+TGG | - | chr1_1:1661646-1661665 | Msa0000500:intron | 55.0% | |
| CGAGGCTTCTTCTGCGTTGT+TGG | + | chr1_1:1663965-1663984 | None:intergenic | 55.0% | |
| TGGCCGGTTGAAACGTAAGC+CGG | + | chr1_1:1664744-1664763 | None:intergenic | 55.0% | |
| ATCATGGAGGTGGTCCCCAC+TGG | + | chr1_1:1656973-1656992 | None:intergenic | 60.0% | |
| TCCCTCCCCTTACCTTCTCC+TGG | - | chr1_1:1658546-1658565 | Msa0000500:intron | 60.0% | |
| GCCAGGAGAAGGTAAGGGGA+GGG | + | chr1_1:1658550-1658569 | None:intergenic | 60.0% | |
| TGCCAGGAGAAGGTAAGGGG+AGG | + | chr1_1:1658551-1658570 | None:intergenic | 60.0% | |
| CGGCAGGATTGTTGCGAGTG+TGG | - | chr1_1:1660094-1660113 | Msa0000500:intron | 60.0% | |
| !! | CTAGCACCGGTCACGAGAGA+AGG | - | chr1_1:1663109-1663128 | Msa0000500:intron | 60.0% |
| ACATGTGGCCAGCCATCTCC+AGG | - | chr1_1:1664368-1664387 | Msa0000500:intron | 60.0% | |
| !! | GTTCGGTTTGGCGCGAGCTA+TGG | + | chr1_1:1664764-1664783 | None:intergenic | 60.0% |
| GGTTTGGCGCGAGCTATGGC+CGG | + | chr1_1:1664760-1664779 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1656644 | 1664851 | 1656644 | ID=Msa0000500;Name=Msa0000500 |
| chr1_1 | mRNA | 1656644 | 1664851 | 1656644 | ID=Msa0000500-mRNA-1;Parent=Msa0000500;Name=Msa0000500-mRNA-1;_AED=0.62;_eAED=0.62;_QI=118|0.2|0.33|0.33|0.6|0.66|6|0|304 |
| chr1_1 | exon | 1656644 | 1656847 | 1656644 | ID=Msa0000500-mRNA-1:exon:255;Parent=Msa0000500-mRNA-1 |
| chr1_1 | exon | 1657106 | 1657182 | 1657106 | ID=Msa0000500-mRNA-1:exon:254;Parent=Msa0000500-mRNA-1 |
| chr1_1 | exon | 1657446 | 1657586 | 1657446 | ID=Msa0000500-mRNA-1:exon:253;Parent=Msa0000500-mRNA-1 |
| chr1_1 | exon | 1658603 | 1658608 | 1658603 | ID=Msa0000500-mRNA-1:exon:252;Parent=Msa0000500-mRNA-1 |
| chr1_1 | exon | 1663994 | 1664162 | 1663994 | ID=Msa0000500-mRNA-1:exon:251;Parent=Msa0000500-mRNA-1 |
| chr1_1 | exon | 1664416 | 1664851 | 1664416 | ID=Msa0000500-mRNA-1:exon:250;Parent=Msa0000500-mRNA-1 |
| chr1_1 | five_prime_UTR | 1664734 | 1664851 | 1664734 | ID=Msa0000500-mRNA-1:five_prime_utr;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1664416 | 1664733 | 1664416 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1663994 | 1664162 | 1663994 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1658603 | 1658608 | 1658603 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1657446 | 1657586 | 1657446 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1657106 | 1657182 | 1657106 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| chr1_1 | CDS | 1656644 | 1656847 | 1656644 | ID=Msa0000500-mRNA-1:cds;Parent=Msa0000500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
