AlfalfaGEDB | MS.gene73381

M. sativa cultivar XinJiangDaYe / MS.gene73381

KEGG: -
GO: -
PFAM: PF12046.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73381.t1	XP_003624513.1	90.4	198	19	0	1	198	1	198	3.60E-91	344.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73381.t1	Q9LSE4	82.5	137	23	1	63	198	68	204	3.2e-56	219.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73381.t1	G7KXA7	90.4	198	19	0	1	198	1	198	2.6e-91	344.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene73381	0.848524	5.80E-60	-1.69E-46
MS.gene049171	MS.gene73381	0.933897	9.29E-96	-1.69E-46
MS.gene049173	MS.gene73381	0.89249	1.51E-74	-1.69E-46
MS.gene049217	MS.gene73381	0.909804	3.80E-82	-1.69E-46
MS.gene049222	MS.gene73381	0.924996	3.33E-90	-1.69E-46
MS.gene049232	MS.gene73381	0.855564	5.80E-62	-1.69E-46
MS.gene049281	MS.gene73381	-0.802249	6.14E-49	-1.69E-46
MS.gene049285	MS.gene73381	0.941959	1.67E-101	-1.69E-46
MS.gene049320	MS.gene73381	0.919363	4.94E-87	-1.69E-46
MS.gene04939	MS.gene73381	0.836796	7.59E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73381.t1	MTR_7g084160	96.970	198	6	0	1	198	1	198	1.82e-142	397

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73381.t1	AT3G26710	82.482	137	23	1	63	198	68	204	3.13e-76	230

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Find 55 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGTTTCTTTGGTTT+TGG	0.222781	7.2:-23363101	None:intergenic
AAAGAATGATAGTACCTCCC+CGG	0.616255	7.2:-23363442	None:intergenic
AACCAATTATTGCCAACATC+CGG	0.490534	7.2:-23364248	None:intergenic
AACTTTGCAGTGGTTGATAG+AGG	0.442912	7.2:+23363474	MS.gene73381:CDS
AAGGAGTGATGGTTCCCAGC+AGG	0.487689	7.2:+23364150	MS.gene73381:CDS
AAGGCACCAAGTCAAGTTGC+CGG	0.443037	7.2:+23363423	MS.gene73381:CDS
AATGCCTTCACTTACGCCAA+TGG	0.524915	7.2:-23364290	None:intergenic
ACCAAGTCAAGTTGCCGGGG+AGG	0.629980	7.2:+23363428	MS.gene73381:CDS
ACCATAACCGTGCCGGATGT+TGG	0.492740	7.2:+23364236	MS.gene73381:CDS
ACCTCCCCGGCAACTTGACT+TGG	0.492320	7.2:-23363429	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTTAAATGTTCTAACCA+TGG	+	chr7.2:23363672-23363691	MS.gene73381:intron	30.0%
GATTTCACCAATGCTTAAAA+TGG	-	chr7.2:23363649-23363668	None:intergenic	30.0%
GCTAGTTATTATACTTCTCT+TGG	+	chr7.2:23363224-23363243	MS.gene73381:CDS	30.0%
GTAAGTAACAAGAGAGAATT+GGG	-	chr7.2:23363182-23363201	None:intergenic	30.0%
TACTAACCAAATCTTTGCAT+AGG	+	chr7.2:23363868-23363887	MS.gene73381:intron	30.0%
TATAGATGAAGGTGGAAATA+AGG	+	chr7.2:23363404-23363423	MS.gene73381:CDS	30.0%
TATTGATCATTGCAAAAGCA+AGG	-	chr7.2:23363549-23363568	None:intergenic	30.0%
TGCTTATAATGAAGTCTAGA+GGG	+	chr7.2:23363619-23363638	MS.gene73381:intron	30.0%
TGGGATTTAATAGTTGTTGT+TGG	-	chr7.2:23363163-23363182	None:intergenic	30.0%
TGTAAGTAACAAGAGAGAAT+TGG	-	chr7.2:23363183-23363202	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	23362990	23364301	23362990	ID=MS.gene73381
chr7.2	mRNA	23362990	23364301	23362990	ID=MS.gene73381.t1;Parent=MS.gene73381
chr7.2	exon	23362990	23363307	23362990	ID=MS.gene73381.t1.exon1;Parent=MS.gene73381.t1
chr7.2	CDS	23362990	23363307	23362990	ID=cds.MS.gene73381.t1;Parent=MS.gene73381.t1
chr7.2	exon	23363387	23363508	23363387	ID=MS.gene73381.t1.exon2;Parent=MS.gene73381.t1
chr7.2	CDS	23363387	23363508	23363387	ID=cds.MS.gene73381.t1;Parent=MS.gene73381.t1
chr7.2	exon	23364145	23364301	23364145	ID=MS.gene73381.t1.exon3;Parent=MS.gene73381.t1
chr7.2	CDS	23364145	23364301	23364145	ID=cds.MS.gene73381.t1;Parent=MS.gene73381.t1

Gene Sequence

>MS.gene73381

ATGGCTGCCAAGATGATGCTGTTGTCCCCACATCCACACCATCTCCCTCTCCGTTCTCTTCCACTTCACTCCAACAAACTACACTCATGGCAGCACCACCACCTTCAAAATCCAAAACCAAAGAAACTTCGTTTATCCCTTCACGAGAGTGCTGAATTCATCACACAAAACCAACAACAACTATTAAATCCCAATTCTCTCTTGTTACTTACAGAGACTACTGGTTACTCTTTGGCTAGTTATTATACTTCTCTTGGTCTTTTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGGTAATTCATTCATTCATTCATTTCATTTCCACTTTGTTTTTTTTTTTGTTGACAATTTCGTGCTTTTATGGAAAAATAGATTGTGAAGAAGACTTTTATAGATGAAGGTGGAAATAAGGCACCAAGTCAAGTTGCCGGGGAGGTACTATCATTCTTTACTCGTAATAACTTTGCAGTGGTTGATAGAGGAGAAACCATCACGTAAGTAACCATTACATTCTCTCTTTAATTGCATTCTCCTTGCTTTTGCAATGATCAATAGAAGATGTTTGGAATCCACAAATTAAATGCAACGAGTAAGCAGATAGTTTTGCTTATAATGAAGTCTAGAGGGAGTACCATTTTAAGCATTGGTGAAATCAATCAAGTTAAATGTTCTAACCATGGTTTTAAACTGTGATCACATTCGTGTTGCAATTGTTGATACCGTGGACATAAGCATTTGTGGCGAAGCAATTTCAATAGTGACGATCACCGAATTCAAAAAACCCTCATTCTAGTAATTTAATGACATTTTGAAAATAACTAATCGAATTTTTACGTTCTTTGGTGAAAGATTTTACTAACCAAATCTTTGCATAGGAGCTCCAGTTTGCTATGACCAATTAAGCCAATCTTTAATGTTGTAAAAGAACCATTTATCAAAAGTCTCTATGTCTACCCATTATTTGGTGTTAACATATCGAGTTAGGAATCTCTCCATTTAGTTATTAATGTCATTAAGTTACTGATATATTGTACTTCAACCTTATCCCTCTCCTATTTTTGCCTCTTAATTAATCATTACGTCATATGAAGATAAACATCTAAACAAGTTTTTCTGTTTCTTCTATGAAGGTTTGAAGGAGTGATGGTTCCCAGCAGGGGGCAAGCAGCACTGTTAACTTTCTGCACTTGCATCAGCCTGGCAAGTGTTTCCCTTGTGCTCACCATAACCGTGCCGGATGTTGGCAATAATTGGTTTTGGTTAACCATCTTAAGTCCATTGGCGTAA

Protein sequence

>MS.gene73381.t1

MAAKMMLLSPHPHHLPLRSLPLHSNKLHSWQHHHLQNPKPKKLRLSLHESAEFITQNQQQLLNPNSLLLLTETTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEGGNKAPSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTITVPDVGNNWFWLTILSPLA