AlfalfaGEDB | Msa1361200

M. sativa cultivar zhongmu-4 / Msa1361200

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361200	XP_003630148.1	93.902	82	5	0	1	82	1	82	2.19e-40	137

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361200	G7LC65	93.902	82	5	0	1	82	1	82	1.04e-40	137

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa1361200	0.822718	2.039093e-53	-8.615850e-47
Msa0006050	Msa1361200	0.850090	2.125477e-60	-8.615850e-47
Msa0006700	Msa1361200	0.808932	2.428646e-50	-8.615850e-47
Msa0020630	Msa1361200	0.804658	1.943780e-49	-8.615850e-47
Msa0026930	Msa1361200	0.834725	2.538775e-56	-8.615850e-47
Msa0036150	Msa1361200	0.825432	4.703179e-54	-8.615850e-47
Msa0038310	Msa1361200	0.809268	2.057964e-50	-8.615850e-47
Msa0040410	Msa1361200	0.841758	3.912535e-58	-8.615850e-47
Msa0040550	Msa1361200	-0.826729	2.312159e-54	-8.615850e-47
Msa0053480	Msa1361200	0.802294	6.007121e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361200	MtrunA17_Chr8g0383471	93.902	82	5	0	1	82	1	82	2.01e-44	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 46 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGGAGACTTTAATTA+TGG	0.215662	tig0017374:+54582	None:intergenic
AACTATAGATATTTGATATA+TGG	0.209688	tig0017374:+55084	None:intergenic
AACTTGAGAGATACTAAAGA+TGG	0.564007	tig0017374:-54743	Msa1361200:CDS
AAGCCAACAACGTAACATTG+AGG	0.634993	tig0017374:-55323	Msa1361200:five_prime_UTR
AAGCTCATAGATAGAATTGC+AGG	0.467654	tig0017374:+54486	None:intergenic
ACAACGTAACATTGAGGGAA+TGG	0.556781	tig0017374:-55317	Msa1361200:five_prime_UTR
ACATATGTCTGCATAAGGTA+AGG	0.543962	tig0017374:+54224	None:intergenic
ACCCTTTGTGTTCTTTAACT+TGG	0.379775	tig0017374:-55293	Msa1361200:five_prime_UTR
ACTAAAGATGGAGCTGAAAA+GGG	0.528078	tig0017374:-54731	Msa1361200:CDS
AGACTTTAATTATGGATTGG+TGG	0.484159	tig0017374:+54590	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGTTATTCTATCAAGTCA+TGG	-	tig0017374:54161-54180	Msa1361200:three_prime_UTR	30.0%
AGTAGATATTTGTACTGTGA+TGG	-	tig0017374:54241-54260	Msa1361200:three_prime_UTR	30.0%
TGATATACGTAGCATATGAT+AGG	-	tig0017374:54448-54467	Msa1361200:three_prime_UTR	30.0%
CCTTATAATGTGAGGTTATT+TGG	+	tig0017374:55006-55025	None:intergenic	30.0%
CCAAATAACCTCACATTATA+AGG	-	tig0017374:55003-55022	Msa1361200:CDS	30.0%
CATTTAACTAGCACAAGATT+TGG	-	tig0017374:55242-55261	Msa1361200:five_prime_UTR	30.0%
TCCAAGTTAAAGAACACAAA+GGG	+	tig0017374:55655-55674	None:intergenic	30.0%
ATCCAAGTTAAAGAACACAA+AGG	+	tig0017374:55656-55675	None:intergenic	30.0%
TCAACAAAAATGCAACAAGA+AGG	+	tig0017374:55926-55945	None:intergenic	30.0%
AACTTGAGAGATACTAAAGA+TGG	-	tig0017374:56201-56220	Msa1361200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017374	gene	54145	56821	54145	ID=Msa1361200;Name=Msa1361200
tig0017374	mRNA	54145	56821	54145	ID=Msa1361200-mRNA-1;Parent=Msa1361200;Name=Msa1361200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=381\|1\|1\|1\|0.5\|0.33\|3\|450\|82
tig0017374	exon	54145	54770	54145	ID=Msa1361200-mRNA-1:exon:12298;Parent=Msa1361200-mRNA-1
tig0017374	exon	54994	55389	54994	ID=Msa1361200-mRNA-1:exon:12297;Parent=Msa1361200-mRNA-1
tig0017374	exon	56764	56821	56764	ID=Msa1361200-mRNA-1:exon:12296;Parent=Msa1361200-mRNA-1
tig0017374	five_prime_UTR	56764	56821	56764	ID=Msa1361200-mRNA-1:five_prime_utr;Parent=Msa1361200-mRNA-1
tig0017374	five_prime_UTR	55067	55389	55067	ID=Msa1361200-mRNA-1:five_prime_utr;Parent=Msa1361200-mRNA-1
tig0017374	CDS	54994	55066	54994	ID=Msa1361200-mRNA-1:cds;Parent=Msa1361200-mRNA-1
tig0017374	CDS	54595	54770	54595	ID=Msa1361200-mRNA-1:cds;Parent=Msa1361200-mRNA-1
tig0017374	three_prime_UTR	54145	54594	54145	ID=Msa1361200-mRNA-1:three_prime_utr;Parent=Msa1361200-mRNA-1

Gene Sequence	>Msa1361200 ATGGCTATTGTACCAAGCAAACGCCTTCTTGTTGCATTTTTGTTGATTTGCTTCATCTTAACTACAGCTCAAGCTAGAAACTTGAGAGATACTAAAGATGGAGCTGAAAAGGGTCAAAGTAGCTTGTTTAAGCTAAACCATGAAGGGACACAAACACAAGAAAAAACACAAACACAAGAAAAAAATGATGACTTGTTGGATACAATGGACTACACACCTGCCTCAAAGAATCCACCAATCCATAATTAA
Protein sequence	>Msa1361200 MAIVPSKRLLVAFLLICFILTTAQARNLRDTKDGAEKGQSSLFKLNHEGTQTQEKTQTQEKNDDLLDTMDYTPASKNPPIHN*