AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029032.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029032.01.T01 MTR_5g080450 93.908 476 14 1 1 461 1 476 0.0 924
MsG0580029032.01.T01 MTR_4g021210 79.245 477 81 3 1 460 1 476 0.0 783
MsG0580029032.01.T01 MTR_3g068030 85.126 437 48 3 1 421 1 436 0.0 766
MsG0580029032.01.T01 MTR_3g068030 85.782 422 44 2 16 421 1 422 0.0 753
MsG0580029032.01.T01 MTR_2g105480 45.665 346 159 9 82 404 75 414 1.19e-97 300
MsG0580029032.01.T01 MTR_2g105480 49.648 284 117 7 82 345 75 352 7.98e-87 270
MsG0580029032.01.T01 MTR_2g105480 51.948 231 85 7 82 292 75 299 7.19e-68 219
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029032.01.T01 AT2G39730 77.101 476 91 3 1 460 1 474 0.0 761
MsG0580029032.01.T01 AT2G39730 76.126 444 88 3 1 428 1 442 0.0 697
MsG0580029032.01.T01 AT2G39730 76.818 440 84 3 1 424 1 438 0.0 696
MsG0580029032.01.T01 AT1G73110 52.542 295 116 7 132 404 39 331 9.82e-103 310
MsG0580029032.01.T01 AT1G73110 48.512 336 144 9 91 404 100 428 1.20e-101 310

Find 122 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGTGTTCTATAGTTT+TGG 0.180442 5:-90670454 MsG0580029032.01.T01:three_prime_UTR
TTCCTCTAATTCTTGGTATC+TGG 0.183651 5:-90673841 MsG0580029032.01.T01:CDS
TAAGCATTCTCCTATTAATT+AGG 0.221537 5:-90670544 MsG0580029032.01.T01:three_prime_UTR
TAGAGAAATGTGTATTGTTT+TGG 0.228371 5:+90675477 None:intergenic
TTACCATCTTGTTAAAATAT+TGG 0.238870 5:-90670477 MsG0580029032.01.T01:three_prime_UTR
TCAATTGGCAGACAAGTATT+TGG 0.252747 5:-90672125 MsG0580029032.01.T01:CDS
CTTCAGGTTCCTCTAATTCT+TGG 0.267602 5:-90673848 MsG0580029032.01.T01:intron
CCTCCCTTAACCTAATTAAT+AGG 0.271295 5:+90670534 None:intergenic
GTTCCAAGTTCATCATTCTT+TGG 0.302261 5:-90674766 MsG0580029032.01.T01:CDS
AAAAGTTGGAGGTCCTTCTT+TGG 0.306483 5:+90672228 None:intergenic
CCAGATGAAACCTTTGTGTT+TGG 0.318881 5:+90674712 None:intergenic
CCAATACGATCCTCTCTTGT+AGG 0.328076 5:+90672699 None:intergenic
TTCTCCTATTAATTAGGTTA+AGG 0.329288 5:-90670538 MsG0580029032.01.T01:three_prime_UTR
CCAACAAATGTTCAACTTCC+TGG 0.344096 5:-90672837 MsG0580029032.01.T01:CDS
ATCAAGAGTGGATCTTACTA+TGG 0.352058 5:-90672067 MsG0580029032.01.T01:intron
TCTCCAGCACTCATCATGAT+AGG 0.354239 5:+90673062 None:intergenic
TCCTCTAATTCTTGGTATCT+GGG 0.357485 5:-90673840 MsG0580029032.01.T01:CDS
TCTCCTATTAATTAGGTTAA+GGG 0.360817 5:-90670537 MsG0580029032.01.T01:three_prime_UTR
TTGGAGAAACTGTTGGAGTA+TGG 0.371448 5:-90672187 MsG0580029032.01.T01:CDS
TAAGTGTTGCATTTACCATT+TGG 0.386480 5:+90672877 None:intergenic
TTTGGATCCGTACAACCTTC+AGG 0.387004 5:+90670633 None:intergenic
CAGTTTCTCCAAAGTCATCT+TGG 0.388317 5:+90672198 None:intergenic
CCAAACACAAAGGTTTCATC+TGG 0.389569 5:-90674712 MsG0580029032.01.T01:CDS
AGCAAACTGACAAAGATAGA+TGG 0.392016 5:-90674651 MsG0580029032.01.T01:CDS
CAAAGATAGATGGGGAGGTT+TGG 0.396410 5:-90674641 MsG0580029032.01.T01:CDS
CCCCAGATACCAAGAATTAG+AGG 0.399957 5:+90673839 None:intergenic
CCAGGAAGTTGAACATTTGT+TGG 0.402105 5:+90672837 None:intergenic
ATCGTATTGGTGTTTGTAAA+GGG 0.408865 5:-90672686 MsG0580029032.01.T01:CDS
CGTGTGCCTATCATTGTTAC+TGG 0.412562 5:-90672789 MsG0580029032.01.T01:CDS
GTCGTATGGAGAAATTCTAT+TGG 0.412826 5:-90672725 MsG0580029032.01.T01:CDS
CAGATTTCTTTGGTGCACTT+AGG 0.414256 5:-90672330 MsG0580029032.01.T01:CDS
AGATTTCTTTGGTGCACTTA+GGG 0.414272 5:-90672329 MsG0580029032.01.T01:CDS
TTGATCATCTGAAGTATCAT+AGG 0.417286 5:+90674618 None:intergenic
CCATCATCACTTCTAGCAGT+TGG 0.419425 5:+90670594 None:intergenic
TGATCAACCCAAGATGACTT+TGG 0.420505 5:-90672206 MsG0580029032.01.T01:CDS
AAATGTGAAGAGAGTTCAAT+TGG 0.422067 5:-90672140 MsG0580029032.01.T01:CDS
TCCGTACAACCTTCAGGAAC+AGG 0.428174 5:+90670639 None:intergenic
CAGTTGAGCTTGAATAGCTC+TGG 0.429062 5:-90674802 MsG0580029032.01.T01:CDS
ATACGACCGTCACGAATAAG+AGG 0.436360 5:+90672741 None:intergenic
TGAGCTTGTCTTTGCTAAGA+TGG 0.442576 5:-90673786 MsG0580029032.01.T01:CDS
GATCGTATTGGTGTTTGTAA+AGG 0.445421 5:-90672687 MsG0580029032.01.T01:CDS
TCATTACCAGTAACAATGAT+AGG 0.445482 5:+90672783 None:intergenic
CTTTGTCGAATTAGTTTCGC+TGG 0.446692 5:+90673014 None:intergenic
CAGGAAGTTGAACATTTGTT+GGG 0.448889 5:+90672838 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 5:+90674554 None:intergenic
AGTTTCTCCAAAGTCATCTT+GGG 0.451215 5:+90672199 None:intergenic
CTTCCAAAGAATGATGAACT+TGG 0.453642 5:+90674763 None:intergenic
TCTTATTCGTGACGGTCGTA+TGG 0.454844 5:-90672739 MsG0580029032.01.T01:CDS
TACTATAAATTCATTCCCTC+TGG 0.456659 5:-90675515 MsG0580029032.01.T01:five_prime_UTR
CATCATCACTTCTAGCAGTT+GGG 0.458963 5:+90670595 None:intergenic
TGATGCAGGAGCCGGTCGTA+TGG 0.459178 5:-90672928 MsG0580029032.01.T01:CDS
GAGCTAGAAAGTGGAAATGC+AGG 0.469912 5:-90673041 MsG0580029032.01.T01:CDS
AAGATTGTTGACACTTTCCC+TGG 0.475212 5:-90672624 MsG0580029032.01.T01:CDS
GAAGTGAGAAAGTGGATTGC+TGG 0.475410 5:-90672289 MsG0580029032.01.T01:CDS
AACGATCTTGATGCAGGAGC+CGG 0.476723 5:-90672936 MsG0580029032.01.T01:CDS
TTCATAAACGATCTTGATGC+AGG 0.477723 5:-90672942 MsG0580029032.01.T01:CDS
CTTGGTATCTGGGGAGGTAA+AGG 0.479768 5:-90673830 MsG0580029032.01.T01:CDS
TTCCAAGCACCACAAGATGC+TGG 0.484718 5:-90674556 MsG0580029032.01.T01:CDS
TCCTGTTCCTGAAGGTTGTA+CGG 0.488800 5:-90670640 MsG0580029032.01.T01:CDS
TCGTATGGAGAAATTCTATT+GGG 0.491059 5:-90672724 MsG0580029032.01.T01:CDS
TATTTGGAAGGGGCTGCTCT+TGG 0.494287 5:-90672109 MsG0580029032.01.T01:CDS
AACCTTGACAACACCATGGA+TGG 0.505223 5:-90674216 MsG0580029032.01.T01:CDS
AGCCCTATCATGATGAGTGC+TGG 0.507079 5:-90673065 MsG0580029032.01.T01:CDS
GCAAACTGACAAAGATAGAT+GGG 0.509312 5:-90674650 MsG0580029032.01.T01:CDS
ATCTTGGGTTGATCAAAAGT+TGG 0.516048 5:+90672214 None:intergenic
ACTTTCCCTGGTCAATCCAT+TGG 0.521362 5:-90672612 MsG0580029032.01.T01:intron
ATGATGATGAAGTGAGAAAG+TGG 0.522348 5:-90672297 MsG0580029032.01.T01:CDS
TCTTATGAGTACATTAGCAC+TGG 0.523592 5:-90674511 MsG0580029032.01.T01:CDS
GGTGTTGGCATTGAAACCAT+TGG 0.529872 5:-90672268 MsG0580029032.01.T01:CDS
GATGACTTTGGAGAAACTGT+TGG 0.532144 5:-90672194 MsG0580029032.01.T01:CDS
GGCAGACAAGTATTTGGAAG+GGG 0.535052 5:-90672119 MsG0580029032.01.T01:CDS
GATGCAGGAGCCGGTCGTAT+GGG 0.535411 5:-90672927 MsG0580029032.01.T01:CDS
GCAGCAGACATAATACGAAA+AGG 0.536262 5:-90672981 MsG0580029032.01.T01:CDS
ATCTTAACAACATCTTCCTC+AGG 0.537207 5:+90672642 None:intergenic
TAGCAAAGACAAGCTCAGCT+TGG 0.537801 5:+90673792 None:intergenic
CTCCAGCACTCATCATGATA+GGG 0.540258 5:+90673063 None:intergenic
GAGCTTGTCTTTGCTAAGAT+GGG 0.542887 5:-90673785 MsG0580029032.01.T01:CDS
AACCATCCATGGTGTTGTCA+AGG 0.543770 5:+90674214 None:intergenic
CCAACTGCTAGAAGTGATGA+TGG 0.547629 5:-90670594 MsG0580029032.01.T01:CDS
GTGTTGGCATTGAAACCATT+GGG 0.550669 5:-90672267 MsG0580029032.01.T01:CDS
CCTCTAATTCTTGGTATCTG+GGG 0.553152 5:-90673839 MsG0580029032.01.T01:CDS
TTGGCAGACAAGTATTTGGA+AGG 0.553516 5:-90672121 MsG0580029032.01.T01:CDS
GTAAGTATTCCTGTTCCTGA+AGG 0.553834 5:-90670648 MsG0580029032.01.T01:CDS
TGTTGTTCCACCCATACGAC+CGG 0.556920 5:+90672917 None:intergenic
ATTGTGTTCACAATGTTAGT+CGG 0.557256 5:-90670426 MsG0580029032.01.T01:three_prime_UTR
ATACACTGTGAACAACCAAA+TGG 0.557588 5:-90672892 MsG0580029032.01.T01:CDS
CCTACAAGAGAGGATCGTAT+TGG 0.558770 5:-90672699 MsG0580029032.01.T01:CDS
AGCTGAGACTGAGGCAACCA+TGG 0.564992 5:+90675430 None:intergenic
CATCACAAGAGGGAAGGGTA+TGG 0.566153 5:-90674590 MsG0580029032.01.T01:CDS
AAGCTTGTGAACTCCAAAGA+AGG 0.566326 5:-90672241 MsG0580029032.01.T01:CDS
TCTTCTTTGTTATACATACC+AGG 0.570852 5:+90672819 None:intergenic
CCTATTAATTAGGTTAAGGG+AGG 0.573901 5:-90670534 MsG0580029032.01.T01:three_prime_UTR
GCAGGAGCCGGTCGTATGGG+TGG 0.574559 5:-90672924 MsG0580029032.01.T01:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.575624 5:+90674180 None:intergenic
AGTGCTGGAGAGCTAGAAAG+TGG 0.577837 5:-90673050 MsG0580029032.01.T01:CDS
AGCTCTAACAGCTGAGACTG+AGG 0.584438 5:+90675421 None:intergenic
CTAATTCTTGGTATCTGGGG+AGG 0.593707 5:-90673836 MsG0580029032.01.T01:CDS
TGGCAGACAAGTATTTGGAA+GGG 0.594237 5:-90672120 MsG0580029032.01.T01:CDS
AGAAAGTGGATTGCTGGTGT+TGG 0.596527 5:-90672283 MsG0580029032.01.T01:CDS
AACTTACCAATGGATTGACC+AGG 0.596752 5:+90672606 None:intergenic
ATCTGGGGAGGTAAAGGTCA+AGG 0.603588 5:-90673824 MsG0580029032.01.T01:CDS
TTGGGTTGATCAAAAGTTGG+AGG 0.603661 5:+90672217 None:intergenic
GGTGAGCAAATTTGTCCAGA+GGG 0.605860 5:+90675500 None:intergenic
ACAAGACATCACAAGAGGGA+AGG 0.605967 5:-90674596 MsG0580029032.01.T01:CDS
AATCAAGATGCTATCAAGAG+TGG 0.612496 5:-90672079 MsG0580029032.01.T01:CDS
TATGCTCCTCTTATTCGTGA+CGG 0.615800 5:-90672747 MsG0580029032.01.T01:CDS
GGGTGAGCAAATTTGTCCAG+AGG 0.616427 5:+90675499 None:intergenic
CAAGACATCACAAGAGGGAA+GGG 0.621491 5:-90674595 MsG0580029032.01.T01:CDS
CTATTGGGCGCCTACAAGAG+AGG 0.622464 5:-90672709 MsG0580029032.01.T01:CDS
CTCGAGGTTTCCAAACACAA+AGG 0.626514 5:-90674722 MsG0580029032.01.T01:CDS
TAATGAGTTCCAGCATCTTG+TGG 0.630506 5:+90674547 None:intergenic
GATCAACAAGACATCACAAG+AGG 0.631005 5:-90674601 MsG0580029032.01.T01:CDS
TAGACATGATAATGTTCCTG+AGG 0.637771 5:-90672658 MsG0580029032.01.T01:CDS
CTTTGTGTTTGGAAACCTCG+AGG 0.648452 5:+90674723 None:intergenic
ACTGACAAAGATAGATGGGG+AGG 0.671037 5:-90674646 MsG0580029032.01.T01:CDS
GCTTAAAGAAAGTTACCTCG+AGG 0.671149 5:-90674738 MsG0580029032.01.T01:CDS
ATCAACAAGACATCACAAGA+GGG 0.675178 5:-90674600 MsG0580029032.01.T01:CDS
AATACAACACAACACAGCCA+TGG 0.681220 5:-90675447 MsG0580029032.01.T01:exon
TCAGCTGTTAGAGCTGTCAG+TGG 0.687429 5:-90675413 MsG0580029032.01.T01:CDS
CAAACTGACAAAGATAGATG+GGG 0.706759 5:-90674649 MsG0580029032.01.T01:CDS
ACTTACCAATGGATTGACCA+GGG 0.716554 5:+90672607 None:intergenic
GTACAACCTTGACAACACCA+TGG 0.736816 5:-90674220 MsG0580029032.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACATAGTATATTAT+TGG + Chr5:90674588-90674607 None:intergenic 10.0%
!! AAAAAACATAGTATATTATT+GGG + Chr5:90674587-90674606 None:intergenic 10.0%
!! ATAGAAAATCAAATAAAAAA+AGG + Chr5:90675207-90675226 None:intergenic 10.0%
!! TAGAAAATCAAATAAAAAAA+GGG + Chr5:90675206-90675225 None:intergenic 10.0%
!! TTATAATATATGTAATAAAC+TGG + Chr5:90673882-90673901 None:intergenic 10.0%
!! TTTGTTTATAATAGAAATAA+TGG - Chr5:90673995-90674014 MsG0580029032.01.T01:intron 10.0%
!!! TTTTGAACAAAATATTTATA+AGG - Chr5:90674815-90674834 MsG0580029032.01.T01:intron 10.0%
!!! TTTTTTTATAAAGACTTTAA+TGG + Chr5:90674614-90674633 None:intergenic 10.0%
!! AGAAAATCAAATAAAAAAAG+GGG + Chr5:90675205-90675224 None:intergenic 15.0%
!! ATAAATATAGTATGATATGA+CGG - Chr5:90670812-90670831 MsG0580029032.01.T01:intron 15.0%
!! ATTTATAAATCAAAATACCA+TGG + Chr5:90670798-90670817 None:intergenic 15.0%
!! TATGTATTTGATTCAAAATT+TGG - Chr5:90673389-90673408 MsG0580029032.01.T01:intron 15.0%
!! TGATCAAATCATTAATTTAT+AGG - Chr5:90670585-90670604 MsG0580029032.01.T01:CDS 15.0%
!! TTTATAAATCAAAATACCAT+GGG + Chr5:90670797-90670816 None:intergenic 15.0%
!!! AAAACATTTAAAGTATGAAT+AGG - Chr5:90674023-90674042 MsG0580029032.01.T01:intron 15.0%
!!! AATATTTTCATAATTTCTTC+AGG - Chr5:90672032-90672051 MsG0580029032.01.T01:intron 15.0%
!!! AATTATTTAAGAGTTTTGAT+AGG + Chr5:90674335-90674354 None:intergenic 15.0%
!!! CAAATCTTTTTTTTATATGA+AGG - Chr5:90671623-90671642 MsG0580029032.01.T01:intron 15.0%
!!! TAATGTAACCTTTTTTTTAT+GGG - Chr5:90674908-90674927 MsG0580029032.01.T01:intron 15.0%
!! AACAAAAGTTGTATTCATTA+TGG + Chr5:90673981-90674000 None:intergenic 20.0%
!! ATATTATAAAGAGTTTGATG+TGG + Chr5:90674490-90674509 None:intergenic 20.0%
!! ATGAGAATCTATCTATATTT+AGG + Chr5:90674286-90674305 None:intergenic 20.0%
!! ATTATTATTCATGTAGATCA+TGG - Chr5:90671813-90671832 MsG0580029032.01.T01:intron 20.0%
!! CTTATATATAAGAGTAAGTT+CGG - Chr5:90673355-90673374 MsG0580029032.01.T01:intron 20.0%
!! TATTATAAAGAGTTTGATGT+GGG + Chr5:90674489-90674508 None:intergenic 20.0%
!! TGAAAAATAGACGTAATTAA+AGG - Chr5:90672499-90672518 MsG0580029032.01.T01:intron 20.0%
!! TTACCATCTTGTTAAAATAT+TGG - Chr5:90675419-90675438 MsG0580029032.01.T01:CDS 20.0%
!!! AATCCAATATTTTAACAAGA+TGG + Chr5:90675425-90675444 None:intergenic 20.0%
!!! AATGTAACCTTTTTTTTATG+GGG - Chr5:90674909-90674928 MsG0580029032.01.T01:intron 20.0%
!!! ACTTTTTTAATTACTCCATT+CGG - Chr5:90673331-90673350 MsG0580029032.01.T01:intron 20.0%
!!! ATCTTTTTTTTATATGAAGG+TGG - Chr5:90671626-90671645 MsG0580029032.01.T01:intron 20.0%
!!! ATTATTGTGTTCTATAGTTT+TGG - Chr5:90675442-90675461 MsG0580029032.01.T01:exon 20.0%
!!! ATTTTAATAGTACATAAGAG+TGG - Chr5:90670877-90670896 MsG0580029032.01.T01:intron 20.0%
!!! GAACTGAAAACAATTTTATA+AGG - Chr5:90674709-90674728 MsG0580029032.01.T01:CDS 20.0%
!!! GTAATGTAACCTTTTTTTTA+TGG - Chr5:90674907-90674926 MsG0580029032.01.T01:intron 20.0%
!!! TGTTGTGAATTTTTATATTG+CGG - Chr5:90671870-90671889 MsG0580029032.01.T01:intron 20.0%
!!! TTATTGTGTTCTATAGTTTT+GGG - Chr5:90675443-90675462 MsG0580029032.01.T01:exon 20.0%
!!! TTATTTTTTGCAGATTTCTT+TGG - Chr5:90673556-90673575 MsG0580029032.01.T01:intron 20.0%
!!! TTTTATTTGATTTTCTATGC+AGG - Chr5:90675209-90675228 MsG0580029032.01.T01:intron 20.0%
!!! TTTTGCTTCTTTCTAATAAA+AGG - Chr5:90674664-90674683 MsG0580029032.01.T01:CDS 20.0%
!!! TTTTTGGAACAATTAATTGA+TGG - Chr5:90672173-90672192 MsG0580029032.01.T01:CDS 20.0%
! AAAAGTTTCAACATTCTAGA+AGG + Chr5:90673317-90673336 None:intergenic 25.0%
! AAAATAACTGATAAGTAGCT+AGG + Chr5:90670529-90670548 None:intergenic 25.0%
! AAAATCATAGCTTCAAATCA+AGG - Chr5:90672229-90672248 MsG0580029032.01.T01:CDS 25.0%
! AAATTACATGCCTTGATATT+AGG + Chr5:90671773-90671792 None:intergenic 25.0%
! AAGCAGAACAATAGAATAAT+TGG - Chr5:90673523-90673542 MsG0580029032.01.T01:intron 25.0%
! AATGATTTACTTATCCTTGA+AGG + Chr5:90674067-90674086 None:intergenic 25.0%
! ACCAAAAAAAGGTTAACAAA+CGG - Chr5:90674375-90674394 MsG0580029032.01.T01:intron 25.0%
! ACTAATTCCCCATAAAAAAA+AGG + Chr5:90674919-90674938 None:intergenic 25.0%
! ATAAAAGGCAAATTATAGCT+AGG - Chr5:90674679-90674698 MsG0580029032.01.T01:CDS 25.0%
! ATAGCATTTGAGTAAACTTT+CGG - Chr5:90670851-90670870 MsG0580029032.01.T01:intron 25.0%
! ATGTGTATTCATGTTTAGAT+TGG + Chr5:90674412-90674431 None:intergenic 25.0%
! ATGTTTAGATTGGCAAAAAA+AGG + Chr5:90674402-90674421 None:intergenic 25.0%
! ATTAATACATCATCATCAGA+TGG + Chr5:90672768-90672787 None:intergenic 25.0%
! CAAGTAATGATTCAAATGTT+TGG - Chr5:90670642-90670661 MsG0580029032.01.T01:CDS 25.0%
! CATCAAAATTCTTTATACTG+AGG - Chr5:90671920-90671939 MsG0580029032.01.T01:intron 25.0%
! TAAGCATTCTCCTATTAATT+AGG - Chr5:90675352-90675371 MsG0580029032.01.T01:intron 25.0%
! TCTCCTATTAATTAGGTTAA+GGG - Chr5:90675359-90675378 MsG0580029032.01.T01:intron 25.0%
! TTCAAGGATAAGTAAATCAT+TGG - Chr5:90674066-90674085 MsG0580029032.01.T01:intron 25.0%
! TTCTCCTATTAATTAGGTTA+AGG - Chr5:90675358-90675377 MsG0580029032.01.T01:intron 25.0%
! TTGCATATTATCTTCATTCA+GGG + Chr5:90674982-90675001 None:intergenic 25.0%
! TTTGCATATTATCTTCATTC+AGG + Chr5:90674983-90675002 None:intergenic 25.0%
!! AAAGTTTCAACATTCTAGAA+GGG + Chr5:90673316-90673335 None:intergenic 25.0%
!! AAGTTTTACAAACAATTGGA+AGG - Chr5:90674091-90674110 MsG0580029032.01.T01:intron 25.0%
!! AGAGAAATGTGTATTGTTTT+GGG + Chr5:90670421-90670440 None:intergenic 25.0%
!! CCAAAAAAGAGTTTCAATTT+TGG + Chr5:90672160-90672179 None:intergenic 25.0%
!! CTCAAAAAAGTATGTATGAT+TGG - Chr5:90674868-90674887 MsG0580029032.01.T01:intron 25.0%
!! GGTAAAGTTTTACAAACAAT+TGG - Chr5:90674087-90674106 MsG0580029032.01.T01:intron 25.0%
!! TAGAGAAATGTGTATTGTTT+TGG + Chr5:90670422-90670441 None:intergenic 25.0%
!! TTTTCTAAACAGATAAGAGT+TGG + Chr5:90673495-90673514 None:intergenic 25.0%
!!! AAGAGTTTCAATTTTGGAAA+TGG + Chr5:90672154-90672173 None:intergenic 25.0%
!!! CAAATCAAGGTTTTGTAAAA+TGG - Chr5:90672242-90672261 MsG0580029032.01.T01:CDS 25.0%
!!! CCAAAATTGAAACTCTTTTT+TGG - Chr5:90672157-90672176 MsG0580029032.01.T01:CDS 25.0%
!!! GTATGAATAGGTATTGATTT+AGG - Chr5:90674035-90674054 MsG0580029032.01.T01:intron 25.0%
!!! TAGATCATGGTTTTAAATTG+TGG - Chr5:90671826-90671845 MsG0580029032.01.T01:intron 25.0%
!!! TATTTTTTTTCCCTCCATTT+TGG + Chr5:90674778-90674797 None:intergenic 25.0%
!!! TTGAAGCTATGATTTTTTCT+AGG + Chr5:90672225-90672244 None:intergenic 25.0%
!!! TTTTTTTTATATGAAGGTGG+TGG - Chr5:90671629-90671648 MsG0580029032.01.T01:intron 25.0%
AAAGAAGCAAAAGATATTGC+AGG + Chr5:90674656-90674675 None:intergenic 30.0%
AAATGTGAAGAGAGTTCAAT+TGG - Chr5:90673756-90673775 MsG0580029032.01.T01:intron 30.0%
AATTCACAACATAACTGCAA+CGG + Chr5:90671861-90671880 None:intergenic 30.0%
ACCACATCAAAATTGAACTT+AGG - Chr5:90674538-90674557 MsG0580029032.01.T01:CDS 30.0%
ACTAACAAAGTCTACATTCA+GGG - Chr5:90675103-90675122 MsG0580029032.01.T01:intron 30.0%
ATTGTGTTCACAATGTTAGT+CGG - Chr5:90675470-90675489 MsG0580029032.01.T01:five_prime_UTR 30.0%
CTCTTATATATAAGACCGAA+TGG + Chr5:90673349-90673368 None:intergenic 30.0%
GAATCAATCATAGACCAAAA+TGG - Chr5:90674761-90674780 MsG0580029032.01.T01:CDS 30.0%
TAAATCAAAATACCATGGGT+TGG + Chr5:90670793-90670812 None:intergenic 30.0%
TACTATAAATTCATTCCCTC+TGG - Chr5:90670381-90670400 MsG0580029032.01.T01:three_prime_UTR 30.0%
TATTATCCTATGAGACACAT+CGG + Chr5:90671063-90671082 None:intergenic 30.0%
TCATTACCAGTAACAATGAT+AGG + Chr5:90673116-90673135 None:intergenic 30.0%
TCGTATGGAGAAATTCTATT+GGG - Chr5:90673172-90673191 MsG0580029032.01.T01:intron 30.0%
TTAAAGGTAACCTCATATGT+CGG - Chr5:90672515-90672534 MsG0580029032.01.T01:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - Chr5:90675132-90675151 MsG0580029032.01.T01:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - Chr5:90675131-90675150 MsG0580029032.01.T01:intron 30.0%
! AAATGTTTGGAATCTGGATT+TGG - Chr5:90670655-90670674 MsG0580029032.01.T01:CDS 30.0%
! ATCGTATTGGTGTTTGTAAA+GGG - Chr5:90673210-90673229 MsG0580029032.01.T01:intron 30.0%
! CTAAAGTATCAGTTCTACTT+AGG + Chr5:90670909-90670928 None:intergenic 30.0%
! CTATTTTATTCGAGTCTTAG+TGG + Chr5:90672001-90672020 None:intergenic 30.0%
! TAAGTGTTGCATTTACCATT+TGG + Chr5:90673022-90673041 None:intergenic 30.0%
! TACATCTCAGTTGACTTAAT+TGG - Chr5:90670737-90670756 MsG0580029032.01.T01:intron 30.0%
! TCAGTTGACTTAATTGGTAT+CGG - Chr5:90670743-90670762 MsG0580029032.01.T01:intron 30.0%
! TCTTCACATTTTCTTGTTCT+TGG + Chr5:90673747-90673766 None:intergenic 30.0%
! TCTTCTTTGTTATACATACC+AGG + Chr5:90673080-90673099 None:intergenic 30.0%
! TGATTCAAATGTTTGGAATC+TGG - Chr5:90670649-90670668 MsG0580029032.01.T01:CDS 30.0%
! TTGATCATCTGAAGTATCAT+AGG + Chr5:90671281-90671300 None:intergenic 30.0%
!! GAGAAATGTGTATTGTTTTG+GGG + Chr5:90670420-90670439 None:intergenic 30.0%
!! TCCTAAGTTCAATTTTGATG+TGG + Chr5:90674542-90674561 None:intergenic 30.0%
!! TTTGATTTTCTATGCAGGTA+AGG - Chr5:90675214-90675233 MsG0580029032.01.T01:intron 30.0%
!!! ACCGTTTGTTAACCTTTTTT+TGG + Chr5:90674379-90674398 None:intergenic 30.0%
AACACTCACACATTTGGATT+GGG + Chr5:90672710-90672729 None:intergenic 35.0%
AATCAAGATGCTATCAAGAG+TGG - Chr5:90673817-90673836 MsG0580029032.01.T01:CDS 35.0%
ACCATGTATGATGGTATTTC+AGG - Chr5:90671654-90671673 MsG0580029032.01.T01:intron 35.0%
ACCTGAAATACCATCATACA+TGG + Chr5:90671658-90671677 None:intergenic 35.0%
ACTAACGAAGTCTACATTCA+GGG - Chr5:90675039-90675058 MsG0580029032.01.T01:intron 35.0%
AGCAAACTGACAAAGATAGA+TGG - Chr5:90671245-90671264 MsG0580029032.01.T01:intron 35.0%
AGCTAGGTAAAGTAACATAC+TGG + Chr5:90670513-90670532 None:intergenic 35.0%
AGTTTCTCCAAAGTCATCTT+GGG + Chr5:90673700-90673719 None:intergenic 35.0%
ATACACTGTGAACAACCAAA+TGG - Chr5:90673004-90673023 MsG0580029032.01.T01:CDS 35.0%
ATCAACAAGACATCACAAGA+GGG - Chr5:90671296-90671315 MsG0580029032.01.T01:intron 35.0%
ATCAAGAGTGGATCTTACTA+TGG - Chr5:90673829-90673848 MsG0580029032.01.T01:CDS 35.0%
ATCTGGATTTGGATTCTCTA+CGG - Chr5:90670666-90670685 MsG0580029032.01.T01:CDS 35.0%
ATCTTAACAACATCTTCCTC+AGG + Chr5:90673257-90673276 None:intergenic 35.0%
ATTGGTTGAATTGTCTGGTT+CGG - Chr5:90671577-90671596 MsG0580029032.01.T01:intron 35.0%
CAAACTGACAAAGATAGATG+GGG - Chr5:90671247-90671266 MsG0580029032.01.T01:intron 35.0%
CAAATTATAGCTAGGTACGA+AGG - Chr5:90674687-90674706 MsG0580029032.01.T01:CDS 35.0%
CAATCATAGACCAAAATGGA+GGG - Chr5:90674765-90674784 MsG0580029032.01.T01:CDS 35.0%
CACAAATTGAGTCTAGACTT+AGG + Chr5:90674141-90674160 None:intergenic 35.0%
CAGGAAGTTGAACATTTGTT+GGG + Chr5:90673061-90673080 None:intergenic 35.0%
CAGTATATGCTTCAATTGCA+TGG + Chr5:90671978-90671997 None:intergenic 35.0%
CCTATTAATTAGGTTAAGGG+AGG - Chr5:90675362-90675381 MsG0580029032.01.T01:intron 35.0%
CCTCCCTTAACCTAATTAAT+AGG + Chr5:90675365-90675384 None:intergenic 35.0%
CGTACACATTAAAGGACTTT+AGG + Chr5:90674210-90674229 None:intergenic 35.0%
CTGAGATGTACGATCTTAAT+AGG + Chr5:90670727-90670746 None:intergenic 35.0%
CTTCCAAAGAATGATGAACT+TGG + Chr5:90671136-90671155 None:intergenic 35.0%
GACTAACAAAGTCTACATTC+AGG - Chr5:90675102-90675121 MsG0580029032.01.T01:intron 35.0%
GATGTACGATCTTAATAGGA+CGG + Chr5:90670723-90670742 None:intergenic 35.0%
GATTTAGGAAAAGTCCTTCA+AGG - Chr5:90674050-90674069 MsG0580029032.01.T01:intron 35.0%
GCAAACTGACAAAGATAGAT+GGG - Chr5:90671246-90671265 MsG0580029032.01.T01:intron 35.0%
GCTGGAATTGTCAAATCATA+TGG + Chr5:90672814-90672833 None:intergenic 35.0%
GTCGTATGGAGAAATTCTAT+TGG - Chr5:90673171-90673190 MsG0580029032.01.T01:intron 35.0%
GTTCAATTGGTTGAATTGTC+TGG - Chr5:90671572-90671591 MsG0580029032.01.T01:intron 35.0%
GTTCCAAGTTCATCATTCTT+TGG - Chr5:90671130-90671149 MsG0580029032.01.T01:intron 35.0%
TAACACTCACACATTTGGAT+TGG + Chr5:90672711-90672730 None:intergenic 35.0%
TATAGTATGATATGACGGTC+TGG - Chr5:90670817-90670836 MsG0580029032.01.T01:intron 35.0%
TCAATCATAGACCAAAATGG+AGG - Chr5:90674764-90674783 MsG0580029032.01.T01:CDS 35.0%
TCAATTGGCAGACAAGTATT+TGG - Chr5:90673771-90673790 MsG0580029032.01.T01:intron 35.0%
TCAGGGACTAAATTGACTAA+CGG - Chr5:90675056-90675075 MsG0580029032.01.T01:intron 35.0%
TCCTCTAATTCTTGGTATCT+GGG - Chr5:90672056-90672075 MsG0580029032.01.T01:intron 35.0%
TCTTATGAGTACATTAGCAC+TGG - Chr5:90671385-90671404 MsG0580029032.01.T01:intron 35.0%
TGACACTAATACGTAGACAT+TGG + Chr5:90671037-90671056 None:intergenic 35.0%
TGCAATGTAAAAACCATCCA+TGG + Chr5:90671696-90671715 None:intergenic 35.0%
TGTTAACCGTTCAATGTGTT+AGG + Chr5:90674176-90674195 None:intergenic 35.0%
TTCATAAACGATCTTGATGC+AGG - Chr5:90672954-90672973 MsG0580029032.01.T01:CDS 35.0%
TTCCTCTAATTCTTGGTATC+TGG - Chr5:90672055-90672074 MsG0580029032.01.T01:intron 35.0%
TTGATGTCTTTACACGTCAT+CGG + Chr5:90671906-90671925 None:intergenic 35.0%
! AGATTTCTTTGGTGCACTTA+GGG - Chr5:90673567-90673586 MsG0580029032.01.T01:intron 35.0%
! ATGATGATGAAGTGAGAAAG+TGG - Chr5:90673599-90673618 MsG0580029032.01.T01:intron 35.0%
! CAGTTGACTTAATTGGTATC+GGG - Chr5:90670744-90670763 MsG0580029032.01.T01:intron 35.0%
! GATCGTATTGGTGTTTGTAA+AGG - Chr5:90673209-90673228 MsG0580029032.01.T01:intron 35.0%
! TAGACATGATAATGTTCCTG+AGG - Chr5:90673238-90673257 MsG0580029032.01.T01:intron 35.0%
!! ATCTTGGGTTGATCAAAAGT+TGG + Chr5:90673685-90673704 None:intergenic 35.0%
!! GTAAAATGGTTTTGCAACCA+CGG - Chr5:90672256-90672275 MsG0580029032.01.T01:CDS 35.0%
!! TTACATTGCACCTGCTTTTA+TGG - Chr5:90671706-90671725 MsG0580029032.01.T01:intron 35.0%
AAAAGTTCCCGACACTGAAT+CGG - Chr5:90671471-90671490 MsG0580029032.01.T01:intron 40.0%
AAAAGTTGGAGGTCCTTCTT+TGG + Chr5:90673671-90673690 None:intergenic 40.0%
AAGATTGTTGACACTTTCCC+TGG - Chr5:90673272-90673291 MsG0580029032.01.T01:intron 40.0%
AAGCTTGTGAACTCCAAAGA+AGG - Chr5:90673655-90673674 MsG0580029032.01.T01:intron 40.0%
AATACAACACAACACAGCCA+TGG - Chr5:90670449-90670468 MsG0580029032.01.T01:three_prime_UTR 40.0%
AATGTGTGAGTGTTAGACAC+CGG - Chr5:90672716-90672735 MsG0580029032.01.T01:CDS 40.0%
ACAAGCTTGTCCATAAAAGC+AGG + Chr5:90671719-90671738 None:intergenic 40.0%
ACTAACGGAGTCTGTATTCA+GGG - Chr5:90675071-90675090 MsG0580029032.01.T01:intron 40.0%
AGGCACAGTCAAATATACCT+TGG - Chr5:90672553-90672572 MsG0580029032.01.T01:intron 40.0%
ATTGGAAGGAGAAAGATGCA+AGG - Chr5:90674105-90674124 MsG0580029032.01.T01:intron 40.0%
CACTGCATTGCGAAAAATTG+TGG + Chr5:90672362-90672381 None:intergenic 40.0%
CAGTTTCTCCAAAGTCATCT+TGG + Chr5:90673701-90673720 None:intergenic 40.0%
CATCATCACTTCTAGCAGTT+GGG + Chr5:90675304-90675323 None:intergenic 40.0%
CATGGTTCAACCGATTGAAT+TGG - Chr5:90671508-90671527 MsG0580029032.01.T01:intron 40.0%
CCAAACACAAAGGTTTCATC+TGG - Chr5:90671184-90671203 MsG0580029032.01.T01:intron 40.0%
CCAACAAATGTTCAACTTCC+TGG - Chr5:90673059-90673078 MsG0580029032.01.T01:CDS 40.0%
CCAGATGAAACCTTTGTGTT+TGG + Chr5:90671187-90671206 None:intergenic 40.0%
CCAGGAAGTTGAACATTTGT+TGG + Chr5:90673062-90673081 None:intergenic 40.0%
CCTCTAATTCTTGGTATCTG+GGG - Chr5:90672057-90672076 MsG0580029032.01.T01:intron 40.0%
CTAGACTGTCTGATCTTGAT+TGG + Chr5:90672583-90672602 None:intergenic 40.0%
CTTCGACCTAACACATTGAA+CGG - Chr5:90674167-90674186 MsG0580029032.01.T01:intron 40.0%
CTTGACTCTGCCTAATATCA+AGG - Chr5:90671760-90671779 MsG0580029032.01.T01:intron 40.0%
GACTAACGAAGTCTACATTC+AGG - Chr5:90675038-90675057 MsG0580029032.01.T01:intron 40.0%
GACTGTGCCTATTTACAATC+CGG + Chr5:90672543-90672562 None:intergenic 40.0%
GAGCTTGTCTTTGCTAAGAT+GGG - Chr5:90672111-90672130 MsG0580029032.01.T01:CDS 40.0%
GATCAACAAGACATCACAAG+AGG - Chr5:90671295-90671314 MsG0580029032.01.T01:intron 40.0%
GCAGCAGACATAATACGAAA+AGG - Chr5:90672915-90672934 MsG0580029032.01.T01:CDS 40.0%
GCTTAAAGAAAGTTACCTCG+AGG - Chr5:90671158-90671177 MsG0580029032.01.T01:intron 40.0%
GGCTGTCAACAAAGATAGAA+CGG + Chr5:90672662-90672681 None:intergenic 40.0%
GTAAGTATTCCTGTTCCTGA+AGG - Chr5:90675248-90675267 MsG0580029032.01.T01:intron 40.0%
GTCCTTTAATGTGTACGATC+AGG - Chr5:90674213-90674232 MsG0580029032.01.T01:CDS 40.0%
GTGTCTAACACTCACACATT+TGG + Chr5:90672716-90672735 None:intergenic 40.0%
TAATGAGTTCCAGCATCTTG+TGG + Chr5:90671352-90671371 None:intergenic 40.0%
TATGCTCCTCTTATTCGTGA+CGG - Chr5:90673149-90673168 MsG0580029032.01.T01:intron 40.0%
TCATTTCCGATGTGTCTCAT+AGG - Chr5:90671054-90671073 MsG0580029032.01.T01:intron 40.0%
TCTAGAAGGGAACTTACCAA+TGG + Chr5:90673303-90673322 None:intergenic 40.0%
TGACGTTGCAAATATAACCG+TGG + Chr5:90672276-90672295 None:intergenic 40.0%
TGAGCTTGTCTTTGCTAAGA+TGG - Chr5:90672110-90672129 MsG0580029032.01.T01:CDS 40.0%
TGATCAACCCAAGATGACTT+TGG - Chr5:90673690-90673709 MsG0580029032.01.T01:intron 40.0%
TGCCTGATCGTACACATTAA+AGG + Chr5:90674218-90674237 None:intergenic 40.0%
TGGCAGACAAGTATTTGGAA+GGG - Chr5:90673776-90673795 MsG0580029032.01.T01:intron 40.0%
TGTGTACGATCAGGCAAAAT+CGG - Chr5:90674222-90674241 MsG0580029032.01.T01:CDS 40.0%
TGTTAGACACCGGTAAATGT+CGG - Chr5:90672726-90672745 MsG0580029032.01.T01:CDS 40.0%
TTGGAGAAACTGTTGGAGTA+TGG - Chr5:90673709-90673728 MsG0580029032.01.T01:intron 40.0%
TTGGCAGACAAGTATTTGGA+AGG - Chr5:90673775-90673794 MsG0580029032.01.T01:intron 40.0%
TTGTGCAGCTCCAATTCAAT+CGG + Chr5:90671521-90671540 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - Chr5:90674936-90674955 MsG0580029032.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + Chr5:90674955-90674936 None:intergenic 40.0%
! CAGATTTCTTTGGTGCACTT+AGG - Chr5:90673566-90673585 MsG0580029032.01.T01:intron 40.0%
! CTTCAGGTTCCTCTAATTCT+TGG - Chr5:90672048-90672067 MsG0580029032.01.T01:intron 40.0%
! CTTTGTCGAATTAGTTTCGC+TGG + Chr5:90672885-90672904 None:intergenic 40.0%
! GATGACTTTGGAGAAACTGT+TGG - Chr5:90673702-90673721 MsG0580029032.01.T01:intron 40.0%
! GTGTTGGCATTGAAACCATT+GGG - Chr5:90673629-90673648 MsG0580029032.01.T01:intron 40.0%
! GTTTTGTGTCCGACATTTAC+CGG + Chr5:90672738-90672757 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - Chr5:90674935-90674954 MsG0580029032.01.T01:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + Chr5:90674954-90674935 None:intergenic 40.0%
!! AACTTACCAATGGATTGACC+AGG + Chr5:90673293-90673312 None:intergenic 40.0%
!! ACTTACCAATGGATTGACCA+GGG + Chr5:90673292-90673311 None:intergenic 40.0%
!! CCAAGATCCGCTTTAAAATC+TGG - Chr5:90672635-90672654 MsG0580029032.01.T01:CDS 40.0%
!! GAACGGTCCAGATTTTAAAG+CGG + Chr5:90672645-90672664 None:intergenic 40.0%
!! GTTCACAAGCTTTTTCCCAA+TGG + Chr5:90673647-90673666 None:intergenic 40.0%
!! TTGAATTGTCTGGTTCGGTT+CGG - Chr5:90671582-90671601 MsG0580029032.01.T01:intron 40.0%
!! TTGGGTTGATCAAAAGTTGG+AGG + Chr5:90673682-90673701 None:intergenic 40.0%
!!! CCAGATTTTAAAGCGGATCT+TGG + Chr5:90672638-90672657 None:intergenic 40.0%
!!! CGGTTCGGTTTTTGAAAGAT+TGG - Chr5:90671597-90671616 MsG0580029032.01.T01:intron 40.0%
AACCTTGACAACACCATGGA+TGG - Chr5:90671680-90671699 MsG0580029032.01.T01:intron 45.0%
ACAAGACATCACAAGAGGGA+AGG - Chr5:90671300-90671319 MsG0580029032.01.T01:intron 45.0%
ACTGACAAAGATAGATGGGG+AGG - Chr5:90671250-90671269 MsG0580029032.01.T01:intron 45.0%
ACTTTCCCTGGTCAATCCAT+TGG - Chr5:90673284-90673303 MsG0580029032.01.T01:intron 45.0%
AGGCAGAGTCAAGAAGTTCT+TGG + Chr5:90671753-90671772 None:intergenic 45.0%
ATACGACCGTCACGAATAAG+AGG + Chr5:90673158-90673177 None:intergenic 45.0%
CAAAGATAGATGGGGAGGTT+TGG - Chr5:90671255-90671274 MsG0580029032.01.T01:intron 45.0%
CAAGACATCACAAGAGGGAA+GGG - Chr5:90671301-90671320 MsG0580029032.01.T01:intron 45.0%
CAGTTGAGCTTGAATAGCTC+TGG - Chr5:90671094-90671113 MsG0580029032.01.T01:intron 45.0%
CCAACTGCTAGAAGTGATGA+TGG - Chr5:90675302-90675321 MsG0580029032.01.T01:intron 45.0%
CCAATACGATCCTCTCTTGT+AGG + Chr5:90673200-90673219 None:intergenic 45.0%
CCATCATCACTTCTAGCAGT+TGG + Chr5:90675305-90675324 None:intergenic 45.0%
CCCCAGATACCAAGAATTAG+AGG + Chr5:90672060-90672079 None:intergenic 45.0%
CCTACAAGAGAGGATCGTAT+TGG - Chr5:90673197-90673216 MsG0580029032.01.T01:intron 45.0%
CGTGTGCCTATCATTGTTAC+TGG - Chr5:90673107-90673126 MsG0580029032.01.T01:intron 45.0%
CTAATTCTTGGTATCTGGGG+AGG - Chr5:90672060-90672079 MsG0580029032.01.T01:intron 45.0%
CTCCAGCACTCATCATGATA+GGG + Chr5:90672836-90672855 None:intergenic 45.0%
CTCGAGGTTTCCAAACACAA+AGG - Chr5:90671174-90671193 MsG0580029032.01.T01:intron 45.0%
CTTTGTGTTTGGAAACCTCG+AGG + Chr5:90671176-90671195 None:intergenic 45.0%
GACTAACGGAGTCTGTATTC+AGG - Chr5:90675070-90675089 MsG0580029032.01.T01:intron 45.0%
GAGCTAGAAAGTGGAAATGC+AGG - Chr5:90672855-90672874 MsG0580029032.01.T01:CDS 45.0%
GGCAGACAAGTATTTGGAAG+GGG - Chr5:90673777-90673796 MsG0580029032.01.T01:intron 45.0%
GGTGAGCAAATTTGTCCAGA+GGG + Chr5:90670399-90670418 None:intergenic 45.0%
GTAACCTCATATGTCGGATC+CGG - Chr5:90672521-90672540 MsG0580029032.01.T01:intron 45.0%
GTACAACCTTGACAACACCA+TGG - Chr5:90671676-90671695 MsG0580029032.01.T01:intron 45.0%
GTCGGATCCGGATTGTAAAT+AGG - Chr5:90672533-90672552 MsG0580029032.01.T01:intron 45.0%
TAGCAAAGACAAGCTCAGCT+TGG + Chr5:90672107-90672126 None:intergenic 45.0%
TATGCAAAACAGTCCCTGCA+TGG - Chr5:90674995-90675014 MsG0580029032.01.T01:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + Chr5:90675011-90675030 None:intergenic 45.0%
TCCCTGCATGGTCAATTTCA+GGG - Chr5:90675007-90675026 MsG0580029032.01.T01:intron 45.0%
TCCTGTTCCTGAAGGTTGTA+CGG - Chr5:90675256-90675275 MsG0580029032.01.T01:intron 45.0%
TCTCCAGCACTCATCATGAT+AGG + Chr5:90672837-90672856 None:intergenic 45.0%
TCTTATTCGTGACGGTCGTA+TGG - Chr5:90673157-90673176 MsG0580029032.01.T01:intron 45.0%
TGATCTTGATTGGACGACCA+AGG + Chr5:90672573-90672592 None:intergenic 45.0%
TTTGGATCCGTACAACCTTC+AGG + Chr5:90675266-90675285 None:intergenic 45.0%
! AGCAGTTGGGTCGAAGTTTT+TGG + Chr5:90675291-90675310 None:intergenic 45.0%
! CACATGTGTCACTAACGTGT+TGG + Chr5:90670975-90670994 None:intergenic 45.0%
! GACTTAATTGGTATCGGGCA+AGG - Chr5:90670749-90670768 MsG0580029032.01.T01:intron 45.0%
! GTCACTTTAGTCCCTGAATG+GGG - Chr5:90674937-90674956 MsG0580029032.01.T01:intron 45.0%
! GTCACTTTAGTCCCTGAATG+GGG + Chr5:90674956-90674937 None:intergenic 45.0%
!! AACCATCCATGGTGTTGTCA+AGG + Chr5:90671685-90671704 None:intergenic 45.0%
!! AGAAAGTGGATTGCTGGTGT+TGG - Chr5:90673613-90673632 MsG0580029032.01.T01:intron 45.0%
!! GAAGTGAGAAAGTGGATTGC+TGG - Chr5:90673607-90673626 MsG0580029032.01.T01:intron 45.0%
!! GCGCTGGTTCATAGTTCAAT+TGG - Chr5:90671559-90671578 MsG0580029032.01.T01:intron 45.0%
!! GGTGTTGGCATTGAAACCAT+TGG - Chr5:90673628-90673647 MsG0580029032.01.T01:intron 45.0%
!!! GGGTCGAAGTTTTTGGCATT+TGG + Chr5:90675284-90675303 None:intergenic 45.0%
!! TTATTCATAAAAAAAAAAAA+TGG + Chr5:90675510-90675529 None:intergenic 5.0%
!!! TTTTTTAAATCTAAAATATT+TGG + Chr5:90672614-90672633 None:intergenic 5.0%
AACGATCTTGATGCAGGAGC+CGG - Chr5:90672960-90672979 MsG0580029032.01.T01:CDS 50.0%
AATTGAACCGTAGACAGCGC+TGG - Chr5:90671543-90671562 MsG0580029032.01.T01:intron 50.0%
ACTGAATCGGCAAGACCACT+AGG - Chr5:90671484-90671503 MsG0580029032.01.T01:intron 50.0%
AGCACTCATCATGATAGGGC+TGG + Chr5:90672832-90672851 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG - Chr5:90672831-90672850 MsG0580029032.01.T01:CDS 50.0%
ATCTGGGGAGGTAAAGGTCA+AGG - Chr5:90672072-90672091 MsG0580029032.01.T01:CDS 50.0%
CAATCCGGATCCGACATATG+AGG + Chr5:90672528-90672547 None:intergenic 50.0%
CATCACAAGAGGGAAGGGTA+TGG - Chr5:90671306-90671325 MsG0580029032.01.T01:intron 50.0%
CTATGAACCAGCGCTGTCTA+CGG + Chr5:90671553-90671572 None:intergenic 50.0%
CTTGGTATCTGGGGAGGTAA+AGG - Chr5:90672066-90672085 MsG0580029032.01.T01:intron 50.0%
GACGAATCGTTCCCCATTCA+GGG - Chr5:90675163-90675182 MsG0580029032.01.T01:intron 50.0%
GACGAATCGTTCCCCATTCA+GGG + Chr5:90675182-90675163 None:intergenic 50.0%
GAGTCAACAGTCGATGTGTC+TGG + Chr5:90673416-90673435 None:intergenic 50.0%
GCAAGGACCGACTAATCTAG+CGG - Chr5:90670766-90670785 MsG0580029032.01.T01:intron 50.0%
GCTATGTGTCAGCTTGTGTC+TGG + Chr5:90672464-90672483 None:intergenic 50.0%
GGGTGAGCAAATTTGTCCAG+AGG + Chr5:90670400-90670419 None:intergenic 50.0%
GTCCCTGAAATTGACCATGC+AGG + Chr5:90675012-90675031 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - Chr5:90675006-90675025 MsG0580029032.01.T01:intron 50.0%
GTGGTGGTCACCATGTATGA+TGG - Chr5:90671645-90671664 MsG0580029032.01.T01:intron 50.0%
GTGTGACTGCACACGCATAT+CGG + Chr5:90672683-90672702 None:intergenic 50.0%
TATTTGGAAGGGGCTGCTCT+TGG - Chr5:90673787-90673806 MsG0580029032.01.T01:CDS 50.0%
TCAGCTGTTAGAGCTGTCAG+TGG - Chr5:90670483-90670502 MsG0580029032.01.T01:three_prime_UTR 50.0%
TCCGTACAACCTTCAGGAAC+AGG + Chr5:90675260-90675279 None:intergenic 50.0%
TCGGTTGAACCATGACCTAG+TGG + Chr5:90671502-90671521 None:intergenic 50.0%
TGACGAATCGTTCCCCATTC+AGG - Chr5:90675162-90675181 MsG0580029032.01.T01:intron 50.0%
TGACGAATCGTTCCCCATTC+AGG + Chr5:90675181-90675162 None:intergenic 50.0%
TGTTGTTCCACCCATACGAC+CGG + Chr5:90672982-90673001 None:intergenic 50.0%
TTCCAAGCACCACAAGATGC+TGG - Chr5:90671340-90671359 MsG0580029032.01.T01:intron 50.0%
TTCCAGCATCTTGTGGTGCT+TGG + Chr5:90671345-90671364 None:intergenic 50.0%
! AGCTCTAACAGCTGAGACTG+AGG + Chr5:90670478-90670497 None:intergenic 50.0%
! AGTGCTGGAGAGCTAGAAAG+TGG - Chr5:90672846-90672865 MsG0580029032.01.T01:CDS 50.0%
! GGTTGGTCCGCTAGATTAGT+CGG + Chr5:90670776-90670795 None:intergenic 50.0%
! TAATCTAGCGGACCAACCCA+TGG - Chr5:90670778-90670797 MsG0580029032.01.T01:intron 50.0%
!! TGGTCTTGCCGATTCAGTGT+CGG + Chr5:90671482-90671501 None:intergenic 50.0%
AGCTGAGACTGAGGCAACCA+TGG + Chr5:90670469-90670488 None:intergenic 55.0%
CTATTGGGCGCCTACAAGAG+AGG - Chr5:90673187-90673206 MsG0580029032.01.T01:intron 55.0%
TCGGCAAGACCACTAGGTCA+TGG - Chr5:90671490-90671509 MsG0580029032.01.T01:intron 55.0%
!! GGTCTTGCCGATTCAGTGTC+GGG + Chr5:90671481-90671500 None:intergenic 55.0%
GATGCAGGAGCCGGTCGTAT+GGG - Chr5:90672969-90672988 MsG0580029032.01.T01:CDS 60.0%
TGATGCAGGAGCCGGTCGTA+TGG - Chr5:90672968-90672987 MsG0580029032.01.T01:CDS 60.0%
GCAGGAGCCGGTCGTATGGG+TGG - Chr5:90672972-90672991 MsG0580029032.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 90670370 90675548 90670370 ID=MsG0580029032.01;Name=MsG0580029032.01
Chr5 mRNA 90670370 90675548 90670370 ID=MsG0580029032.01.T01;Parent=MsG0580029032.01;Name=MsG0580029032.01.T01;_AED=0.45;_eAED=0.45;_QI=98|0.83|0.85|1|1|1|7|199|461
Chr5 exon 90670370 90670687 90670370 ID=MsG0580029032.01.T01:exon:17725;Parent=MsG0580029032.01.T01
Chr5 exon 90672068 90672349 90672068 ID=MsG0580029032.01.T01:exon:17724;Parent=MsG0580029032.01.T01
Chr5 exon 90672613 90673085 90672613 ID=MsG0580029032.01.T01:exon:17723;Parent=MsG0580029032.01.T01
Chr5 exon 90673779 90673864 90673779 ID=MsG0580029032.01.T01:exon:17722;Parent=MsG0580029032.01.T01
Chr5 exon 90674182 90674242 90674182 ID=MsG0580029032.01.T01:exon:17721;Parent=MsG0580029032.01.T01
Chr5 exon 90674502 90674821 90674502 ID=MsG0580029032.01.T01:exon:17720;Parent=MsG0580029032.01.T01
Chr5 exon 90675406 90675548 90675406 ID=MsG0580029032.01.T01:exon:17719;Parent=MsG0580029032.01.T01
Chr5 five_prime_UTR 90675451 90675548 90675451 ID=MsG0580029032.01.T01:five_prime_utr;Parent=MsG0580029032.01.T01
Chr5 CDS 90675406 90675450 90675406 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90674502 90674821 90674502 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90674182 90674242 90674182 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90673779 90673864 90673779 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90672613 90673085 90672613 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90672068 90672349 90672068 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 CDS 90670569 90670687 90670569 ID=MsG0580029032.01.T01:cds;Parent=MsG0580029032.01.T01
Chr5 three_prime_UTR 90670370 90670568 90670370 ID=MsG0580029032.01.T01:three_prime_utr;Parent=MsG0580029032.01.T01
Gene Sequence

>MsG0580029032.01.T01

ATGGTTGCCTCAGTCTCAGCTGTTAGAGCTGTCAGTGGAACACCATTGAGCTTGAATAGCTCTGGAGCAGTAGCTTCAGTTCCAAGTTCATCATTCTTTGGAAGCAGCTTAAAGAAAGTTACCTCGAGGTTTCCAAACACAAAGGTTTCATCTGGAAGTATCAAAATTGTTTGTGCTGAGATTGATGAAAGCAAGCAAACTGACAAAGATAGATGGGGAGGTTTGGCCTATGATACTTCAGATGATCAACAAGACATCACAAGAGGGAAGGGTATGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGCACTGGACTTAGACAGTACAACCTTGACAACACCATGGATGGTTTTTACATTGCACCTGCTTTTATGGACAAGCTTGTTCCTCTAATTCTTGGTATCTGGGGAGGTAAAGGTCAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAACCAGCGAAACTAATTCGACAAAGATATAGAGAAGCAGCAGACATAATACGAAAAGGAAAAATGTGTTGTCTCTTCATAAACGATCTTGATGCAGGAGCCGGTCGTATGGGTGGAACAACACAATACACTGTGAACAACCAAATGGTAAATGCAACACTTATGAACATTGCTGATAACCCAACAAATGTTCAACTTCCTGGTATGTATAACAAAGAAGAGAATGCACGTGTGCCTATCATTGTTACTGGTAATGATTTTTCAACATTGTATGCTCCTCTTATTCGTGACGGTCGTATGGAGAAATTCTATTGGGCGCCTACAAGAGAGGATCGTATTGGTGTTTGTAAAGGGATTTTTAGACATGATAATGTTCCTGAGGAAGATGTTGTTAAGATTGTTGACACTTTCCCTGGTCAATCCATTGATTTCTTTGGTGCACTTAGGGCAAGAGTATATGATGATGAAGTGAGAAAGTGGATTGCTGGTGTTGGCATTGAAACCATTGGGAAAAAGCTTGTGAACTCCAAAGAAGGACCTCCAACTTTTGATCAACCCAAGATGACTTTGGAGAAACTGTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGAAAATGTGAAGAGAGTTCAATTGGCAGACAAGTATTTGGAAGGGGCTGCTCTTGGTGATGCTAATCAAGATGCTATCAAGAGTGGATCTTACTATGGTAAGGCAGCTCAACAAGTAAGTATTCCTGTTCCTGAAGGTTGTACGGATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTTGAATAA

Protein sequence

>MsG0580029032.01.T01

MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGSSLKKVTSRFPNTKVSSGSIKIVCAEIDESKQTDKDRWGGLAYDTSDDQQDITRGKGMVDSVFQAPQDAGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFMDKLVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSYYGKAAQQVSIPVPEGCTDPNAKNFDPTARSDDGTCLYTFE*