AlfalfaGEDB | Msa1362110

M. sativa cultivar zhongmu-4 / Msa1362110

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362110	AES82159.1	94.483	145	3	2	1	140	1	145	1.00e-91	272

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362110	G7KSQ8	94.483	145	3	2	1	140	1	145	4.78e-92	272

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa1362110	0.839072	1.972137e-57	-8.615850e-47
Msa0002700	Msa1362110	0.836374	9.716337e-57	-8.615850e-47
Msa0004180	Msa1362110	0.808556	2.922408e-50	-8.615850e-47
Msa0005500	Msa1362110	0.803568	3.275725e-49	-8.615850e-47
Msa0011410	Msa1362110	0.820537	6.508135e-53	-8.615850e-47
Msa0011440	Msa1362110	0.805251	1.460723e-49	-8.615850e-47
Msa0018010	Msa1362110	0.825384	4.828525e-54	-8.615850e-47
Msa0021570	Msa1362110	0.814831	1.261115e-51	-8.615850e-47
Msa0030710	Msa1362110	0.830413	2.978213e-55	-8.615850e-47
Msa0046020	Msa1362110	0.821141	4.726263e-53	-8.615850e-47

Showing 1 to 10 of 321 entries

Previous1 2 3 4 5…33Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362110	MtrunA17_Chr7g0269761	94.483	145	3	2	1	140	1	145	9.20e-96	272
Msa1362110	MtrunA17_Chr1g0195071	45.000	140	52	8	6	125	10	144	3.46e-25	93.6

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362110	AT3G62650.2	43.151	146	69	5	4	140	1	141	5.35e-26	96.3
Msa1362110	AT3G62650.1	43.151	146	69	5	4	140	1	141	5.35e-26	96.3
Msa1362110	AT2G47485.1	41.935	124	67	2	10	129	4	126	3.27e-25	94.0

Showing 1 to 3 of 3 entries

Previous1Next

Find 41 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAAACAAGTCAGGT+CGG	0.632985	tig0017690:+237180	Msa1362110:CDS
AAAGTACTGGAAGAGAAGAA+AGG	0.478666	tig0017690:+237151	Msa1362110:CDS
AACACGGTGAAGCTTGGAGG+AGG	0.574678	tig0017690:+237209	Msa1362110:CDS
AACTCGTTGGTTGTGGCTCA+GGG	0.548116	tig0017690:+237470	Msa1362110:CDS
AAGACGAACACGGTGAAGCT+TGG	0.488739	tig0017690:+237203	Msa1362110:CDS
AAGTACTGGAAGAGAAGAAA+GGG	0.458738	tig0017690:+237152	Msa1362110:CDS
AATGACCCCACATGTGGATT+TGG	0.260607	tig0017690:+237395	Msa1362110:CDS
ACCAAGCATCATCCTCACAT+AGG	0.675038	tig0017690:-237336	None:intergenic
ACCCCACATGTGGATTTGGG+AGG	0.612193	tig0017690:+237399	Msa1362110:CDS
ACGAACACGGTGAAGCTTGG+AGG	0.557850	tig0017690:+237206	Msa1362110:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATAAACAAGTCAGGT+CGG	+	tig0017690:237180-237199	Msa1362110:CDS	30.0%
TTCTTAGGAGAAGAAATTGT+TGG	-	tig0017690:237293-237312	None:intergenic	30.0%
CAATTTCTTCTCCTAAGAAA+TGG	+	tig0017690:237294-237313	Msa1362110:CDS	30.0%
TGTTCATATGTATAACTCGT+TGG	+	tig0017690:237457-237476	Msa1362110:CDS	30.0%
TTCTTCTCCTAAGAAATGGA+TGG	+	tig0017690:237298-237317	Msa1362110:CDS	35.0%
CCATTTCTTCTTTGTTCTGG+TGG	-	tig0017690:237240-237259	None:intergenic	40.0%
CCACCAGAACAAAGAAGAAA+TGG	+	tig0017690:237237-237256	Msa1362110:CDS	40.0%
CCTCCATTTCTTCTTTGTTC+TGG	-	tig0017690:237243-237262	None:intergenic	40.0%
CCAGAACAAAGAAGAAATGG+AGG	+	tig0017690:237240-237259	Msa1362110:CDS	40.0%
ATCCACACCATCCATTTCTT+AGG	-	tig0017690:237308-237327	None:intergenic	40.0%

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
tig0017690	gene	237125	237547	237125	ID=Msa1362110;Name=Msa1362110
tig0017690	mRNA	237125	237547	237125	ID=Msa1362110-mRNA-1;Parent=Msa1362110;Name=Msa1362110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|140
tig0017690	exon	237125	237547	237125	ID=Msa1362110-mRNA-1:exon:12797;Parent=Msa1362110-mRNA-1
tig0017690	CDS	237125	237547	237125	ID=Msa1362110-mRNA-1:cds;Parent=Msa1362110-mRNA-1

Gene Sequence

>Msa1362110

ATGGAATGCATGCAAAGGAGTTTGAAAAAGTACTGGAAGAGAAGAAAGGGATATCAAAGAATAAACAAGTCAGGTCGGAAGACGAACACGGTGAAGCTTGGAGGAGGAGCAACCACCAGAACAAAGAAGAAATGGAGGATCAAAATTTCTCCTAAGATAAAATTTCCAACAATTTCTTCTCCTAAGAAATGGATGGTGTGGATGAGAGACTCCTATGTGAGGATGATGCTTGGTTTGGCTAACTCGAAGGTAATGAATTTGACTAGCTTCAATGACCCCACATGTGGATTTGGGAGGGCTCCACAACCTAAGGAATACGATAATAAAATGCTTGTTCATATGTATAACTCGTTGGTTGTGGCTCAGGGACATTTGGTTCCACTCGATAATTTACCATCAAAATTGGGCTCAGAAACAGCTTGA

Protein sequence

>Msa1362110

MECMQRSLKKYWKRRKGYQRINKSGRKTNTVKLGGGATTRTKKKWRIKISPKIKFPTISSPKKWMVWMRDSYVRMMLGLANSKVMNLTSFNDPTCGFGRAPQPKEYDNKMLVHMYNSLVVAQGHLVPLDNLPSKLGSETA*