AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224310 MtrunA17_Chr4g0076241 96.307 352 13 0 1 352 1 352 0.0 686
Msa1224310 MtrunA17_Chr5g0446411 57.061 347 145 2 1 347 1 343 5.22e-128 370
Msa1224310 MtrunA17_Chr7g0270761 35.836 293 184 2 55 343 131 423 1.83e-64 210
Msa1224310 MtrunA17_Chr4g0051871 36.462 277 168 4 76 347 140 413 1.66e-61 202
Msa1224310 MtrunA17_Chr5g0443241 32.515 326 190 9 3 313 37 347 1.04e-45 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224310 AT5G55630.2 57.627 295 125 0 53 347 58 352 9.09e-119 348
Msa1224310 AT5G55630.1 57.627 295 125 0 53 347 58 352 9.09e-119 348
Msa1224310 AT4G18160.1 38.571 280 167 3 72 347 151 429 6.00e-60 199
Msa1224310 AT4G01840.1 32.530 332 208 3 26 347 78 403 4.38e-57 191
Msa1224310 AT5G46370.1 36.429 280 165 5 78 347 153 429 9.11e-57 191
Msa1224310 AT1G02510.1 33.216 283 167 3 53 335 17 277 1.13e-45 157
Msa1224310 AT5G46360.1 38.554 166 101 1 183 347 89 254 8.72e-31 117
Msa1224310 AT5G46360.2 38.732 142 86 1 183 323 89 230 1.08e-25 104

Find 64 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCCACGGTCACTACTTT+AGG 0.301171 8_1:+89109823 Msa1224310:CDS
GTTATACATTGTGGAGATAA+AGG 0.305350 8_1:-89109310 None:intergenic
GAAATTTGAACAACCTTATC+AGG 0.305862 8_1:+89107903 Msa1224310:five_prime_UTR
ATGTGCAAGGCTGAAAATTT+TGG 0.309852 8_1:+89109649 Msa1224310:CDS
TGTATACAAGTTGAAGGAAA+TGG 0.323817 8_1:+89112673 Msa1224310:CDS
CGGTCACTACTTTAGGTTAT+GGG 0.344172 8_1:+89109830 Msa1224310:CDS
TCACTGCTGAAATATCTTCT+TGG 0.344460 8_1:-89112706 None:intergenic
TTGTCACAACACAGAAATAA+AGG 0.357592 8_1:-89109468 None:intergenic
TGTCGTGGTGGACTAGGAAT+AGG 0.358743 8_1:-89107714 None:intergenic
ACTAGTAAAATCTGAGTCAT+TGG 0.385151 8_1:+89107689 None:intergenic
AGATTACATTGTTGAGAAAC+AGG 0.387285 8_1:+89109606 Msa1224310:CDS
ACGGTCACTACTTTAGGTTA+TGG 0.387375 8_1:+89109829 Msa1224310:CDS
TTATACATTGTGGAGATAAA+GGG 0.395633 8_1:-89109309 None:intergenic
ATTGTGGAGATAAAGGGGTT+TGG 0.406546 8_1:-89109303 None:intergenic
GTATACAAGTTGAAGGAAAT+GGG 0.421596 8_1:+89112674 Msa1224310:CDS
CTTGAGGCAGCAGATCTTGA+TGG 0.425392 8_1:+89110021 Msa1224310:CDS
GTCTTCACTGGCATGGCTCT+CGG 0.434853 8_1:+89109559 Msa1224310:CDS
ACAATGACTACTGTTGGATA+TGG 0.435922 8_1:+89109487 Msa1224310:CDS
GTTTGTTGTATACAAGTTGA+AGG 0.439684 8_1:+89112667 Msa1224310:CDS
GCATGCATTTATGTCTTCAC+TGG 0.440926 8_1:+89109547 Msa1224310:CDS
AGCATTAGTAAATAAGTTGA+TGG 0.453687 8_1:+89109129 Msa1224310:exon
GAAGAAGAAGTTGTCGATTG+AGG 0.454673 8_1:-89107840 None:intergenic
TCTAACAAGTTACCAAATTG+AGG 0.463818 8_1:+89109417 Msa1224310:CDS
ACGATTGGATATACCTGATA+AGG 0.467074 8_1:-89107916 None:intergenic
TGTCACAACACAGAAATAAA+GGG 0.481987 8_1:-89109467 None:intergenic
AATTCATGATGTGTATAGTA+AGG 0.483946 8_1:-89112825 None:intergenic
GAATGTCCATTTGGAAGCAT+CGG 0.489194 8_1:+89107778 Msa1224310:five_prime_UTR
ATTGAGCAGCACCATTTGCT+TGG 0.490697 8_1:+89109903 Msa1224310:CDS
AGCTATTGCTTTCAGAGTCA+AGG 0.495133 8_1:+89109170 Msa1224310:CDS
GTGGAGATAAAGGGGTTTGG+AGG 0.501419 8_1:-89109300 None:intergenic
AAACTAGACTGTGATCAATC+AGG 0.508619 8_1:+89112743 Msa1224310:CDS
CATTTATGTCTTCACTGGCA+TGG 0.510032 8_1:+89109552 Msa1224310:CDS
GCAGTCTTCTTCTCTGAAGA+AGG 0.515544 8_1:-89109222 None:intergenic
ATGTCTCCGATGCTTCCAAA+TGG 0.517766 8_1:-89107784 None:intergenic
AGAAGATATTTCAGCAGTGA+TGG 0.521751 8_1:+89112709 Msa1224310:CDS
AAGAGCTTCTCGACTGCTGC+CGG 0.529816 8_1:+89109856 Msa1224310:CDS
CTAACAAGTTACCAAATTGA+GGG 0.530492 8_1:+89109418 Msa1224310:CDS
AAGAAGCAGAATTCAAGTTC+AGG 0.531566 8_1:+89109341 Msa1224310:CDS
AAAAGACTGAGCCAAGCAAA+TGG 0.534462 8_1:-89109914 None:intergenic
ACTCTATTGTGTTTGTTCCA+CGG 0.539533 8_1:+89109810 Msa1224310:CDS
TGTTTATCAGTTATACATTG+TGG 0.539721 8_1:-89109319 None:intergenic
TAAGGCAGATGATGTTAAGA+TGG 0.546031 8_1:-89112807 None:intergenic
TTGATGGAGACAAAGTTGTC+AGG 0.546814 8_1:+89110037 Msa1224310:CDS
GCTATTGCTTTCAGAGTCAA+GGG 0.570375 8_1:+89109171 Msa1224310:CDS
TCTTGCTGAGTCCATGTGCA+AGG 0.575638 8_1:+89109636 Msa1224310:CDS
ACTTGTTAGATAGAAACATA+AGG 0.578014 8_1:-89109404 None:intergenic
ATTATCACTAAGTGATCTTG+AGG 0.579141 8_1:+89110005 Msa1224310:CDS
TATACATTGTGGAGATAAAG+GGG 0.579592 8_1:-89109308 None:intergenic
TGAAGACATAAATGCATGCA+AGG 0.589047 8_1:-89109543 None:intergenic
TTGTGTTTAGCAGCATACCT+AGG 0.589326 8_1:+89109373 Msa1224310:CDS
GTTGTGACAATGACTACTGT+TGG 0.595895 8_1:+89109481 Msa1224310:CDS
GGTCACTACTTTAGGTTATG+GGG 0.598779 8_1:+89109831 Msa1224310:CDS
TGAAGATAGACAAAGATCAC+TGG 0.601013 8_1:+89109960 Msa1224310:CDS
GCATTAGTAAATAAGTTGAT+GGG 0.601074 8_1:+89109130 Msa1224310:exon
AACATAAGGTACCTGTGCCT+AGG 0.617422 8_1:-89109390 None:intergenic
AGAAGAAGACTGCGGCGTGG+CGG 0.622978 8_1:+89109232 Msa1224310:CDS
GCTTCTCGACTGCTGCCGGT+AGG 0.626037 8_1:+89109860 Msa1224310:CDS
TTAGCAGCATACCTAGGCAC+AGG 0.645513 8_1:+89109379 Msa1224310:CDS
TTCACTGGCATGGCTCTCGG+TGG 0.647484 8_1:+89109562 Msa1224310:CDS
AATCTGCAGCAAGAACAGAA+TGG 0.667031 8_1:+89109274 Msa1224310:CDS
GCTGCTCAATATCCAAAACA+CGG 0.699934 8_1:-89109890 None:intergenic
ATAACCTAAAGTAGTGACCG+TGG 0.717695 8_1:-89109827 None:intergenic
CAGAGAAGAAGACTGCGGCG+TGG 0.719236 8_1:+89109229 Msa1224310:CDS
TTCTTCAGAGAAGAAGACTG+CGG 0.725911 8_1:+89109224 Msa1224310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTATTTTTTTT+TGG + chr8_1:89112404-89112423 Msa1224310:intron 0.0%
!!! TAAAGTAATATTTTACATTT+GGG - chr8_1:89110406-89110425 None:intergenic 10.0%
!!! ATAAAGTAATATTTTACATT+TGG - chr8_1:89110407-89110426 None:intergenic 10.0%
!! ATTAAAAAAATTATTCAATG+CGG + chr8_1:89110596-89110615 Msa1224310:intron 10.0%
!! TGAAAAACATAAAATTAATT+GGG - chr8_1:89111684-89111703 None:intergenic 10.0%
!! TTGAAAAACATAAAATTAAT+TGG - chr8_1:89111685-89111704 None:intergenic 10.0%
!!! AATGAGTTTTTTAAATTTTT+GGG + chr8_1:89112028-89112047 Msa1224310:intron 10.0%
!! TAATTTCAATAAAAATTATG+TGG + chr8_1:89112075-89112094 Msa1224310:intron 10.0%
!!! TTTCCATTTTATTTTATTTT+TGG - chr8_1:89112299-89112318 None:intergenic 10.0%
!! ATAAAATGGAAATTAAAATA+AGG + chr8_1:89112307-89112326 Msa1224310:intron 10.0%
!!! AATCAATCTTAAACATTTTA+AGG + chr8_1:89107749-89107768 Msa1224310:five_prime_UTR 15.0%
!! AAATATAGAGTAATAGTTAT+AGG - chr8_1:89108029-89108048 None:intergenic 15.0%
!! AACATTGAATTGAAATTTAA+TGG + chr8_1:89108083-89108102 Msa1224310:intron 15.0%
!!! TAGTTTTTTTTTGTAATGTT+CGG - chr8_1:89108817-89108836 None:intergenic 15.0%
!! AACATTACAAAAAAAAACTA+AGG + chr8_1:89108817-89108836 Msa1224310:intron 15.0%
!! ACATTACAAAAAAAAACTAA+GGG + chr8_1:89108818-89108837 Msa1224310:intron 15.0%
!! ACATAAGCATTTATATAATA+AGG + chr8_1:89109037-89109056 Msa1224310:intron 15.0%
!! CATAAGCATTTATATAATAA+GGG + chr8_1:89109038-89109057 Msa1224310:intron 15.0%
!! TTAAAAAAATTATTCAATGC+GGG + chr8_1:89110597-89110616 Msa1224310:intron 15.0%
!!! AAAGTCATTTTTTTTAATAG+GGG - chr8_1:89112224-89112243 None:intergenic 15.0%
!!! GAAAGTCATTTTTTTTAATA+GGG - chr8_1:89112223-89112242 None:intergenic 15.0%
!! AGAATTAAAAAGAGTTAAAA+AGG + chr8_1:89111041-89111060 Msa1224310:intron 15.0%
!!! ATATTTTCGAAATTCAAATT+AGG - chr8_1:89111562-89111581 None:intergenic 15.0%
!! GAAAAACATAAAATTAATTG+GGG - chr8_1:89111683-89111702 None:intergenic 15.0%
!!! ATCATAAACTTAAGTTTTAT+AGG - chr8_1:89111746-89111765 None:intergenic 15.0%
!!! AAACTTAAGTTTATGATTTT+TGG + chr8_1:89111749-89111768 Msa1224310:intron 15.0%
!!! GAATGAGTTTTTTAAATTTT+TGG + chr8_1:89112027-89112046 Msa1224310:intron 15.0%
!!! GAAAGTCATTTTTTTTAATA+GGG + chr8_1:89112223-89112242 Msa1224310:intron 15.0%
!!! AAAGTCATTTTTTTTAATAG+GGG + chr8_1:89112224-89112243 Msa1224310:intron 15.0%
!! TAGCCAAAAATAAAATAAAA+TGG + chr8_1:89112293-89112312 Msa1224310:intron 15.0%
!!! AAGTTTATACTTTTAATGAA+TGG + chr8_1:89112926-89112945 Msa1224310:three_prime_UTR 15.0%
!!! ATATCGATTGAAATCTTAAA+AGG - chr8_1:89107966-89107985 None:intergenic 20.0%
!! ATGGTAATTGTAATTGTTAA+TGG + chr8_1:89108102-89108121 Msa1224310:intron 20.0%
!!! ATTTATTTGAGTTTAGTTAC+CGG + chr8_1:89108609-89108628 Msa1224310:intron 20.0%
!! TTATGAGTGAATTTGTAAAT+TGG - chr8_1:89110179-89110198 None:intergenic 20.0%
!! TAAAAAAATTATTCAATGCG+GGG + chr8_1:89110598-89110617 Msa1224310:intron 20.0%
!!! AAGTCATTTTTTTTAATAGG+GGG - chr8_1:89112225-89112244 None:intergenic 20.0%
!!! GGAAAGTCATTTTTTTTAAT+AGG - chr8_1:89112222-89112241 None:intergenic 20.0%
!!! AAAGAGTTAAAAAGGAATTT+TGG + chr8_1:89111049-89111068 Msa1224310:intron 20.0%
!! AATTAAAAAAAAATTCCACG+TGG + chr8_1:89112113-89112132 Msa1224310:intron 20.0%
!!! GGAAAGTCATTTTTTTTAAT+AGG + chr8_1:89112222-89112241 Msa1224310:intron 20.0%
!!! AAGTCATTTTTTTTAATAGG+GGG + chr8_1:89112225-89112244 Msa1224310:intron 20.0%
!! TTTATTTATATCATTTGCAC+CGG + chr8_1:89112514-89112533 Msa1224310:intron 20.0%
!! AAAATTGTTGATCAATATTG+AGG - chr8_1:89112631-89112650 None:intergenic 20.0%
! AAAAGATTTAACATCTTGAG+AGG - chr8_1:89108410-89108429 None:intergenic 25.0%
!! ACTATTTTCATAAGTCATTG+TGG - chr8_1:89108959-89108978 None:intergenic 25.0%
!! AGCATTAGTAAATAAGTTGA+TGG + chr8_1:89109129-89109148 Msa1224310:exon 25.0%
!!! GCATTAGTAAATAAGTTGAT+GGG + chr8_1:89109130-89109149 Msa1224310:exon 25.0%
! TTATACATTGTGGAGATAAA+GGG - chr8_1:89109312-89109331 None:intergenic 25.0%
! TGTTTATCAGTTATACATTG+TGG - chr8_1:89109322-89109341 None:intergenic 25.0%
!! ACTTGTTAGATAGAAACATA+AGG - chr8_1:89109407-89109426 None:intergenic 25.0%
!! TATTGAGAATCTAGATTTTG+TGG + chr8_1:89109783-89109802 Msa1224310:CDS 25.0%
!! ATCACTTAGTGATAATTTTC+GGG - chr8_1:89110001-89110020 None:intergenic 25.0%
!! GATCACTTAGTGATAATTTT+CGG - chr8_1:89110002-89110021 None:intergenic 25.0%
!!! TAATATTTTACATTTGGGAC+GGG - chr8_1:89110401-89110420 None:intergenic 25.0%
!! GTAATATTTTACATTTGGGA+CGG - chr8_1:89110402-89110421 None:intergenic 25.0%
! AAACTACCTTTGATACTTAA+AGG + chr8_1:89110472-89110491 Msa1224310:intron 25.0%
!!! TGTATTACAATGTTGCTTTT+AGG + chr8_1:89110549-89110568 Msa1224310:intron 25.0%
!!! GTATTACAATGTTGCTTTTA+GGG + chr8_1:89110550-89110569 Msa1224310:intron 25.0%
!!! TCGCAACTTTTTAAAACATA+GGG - chr8_1:89110861-89110880 None:intergenic 25.0%
!!! ATCGCAACTTTTTAAAACAT+AGG - chr8_1:89110862-89110881 None:intergenic 25.0%
!!! GTTTTAAAAAGTTGCGATTT+TGG + chr8_1:89110864-89110883 Msa1224310:intron 25.0%
! TTAATTAATTAAATGCCACG+TGG - chr8_1:89111002-89111021 None:intergenic 25.0%
! GAAATGATTGAAGATATTCT+GGG - chr8_1:89111204-89111223 None:intergenic 25.0%
! AAGAAAAAAGGGATTCAAAT+GGG - chr8_1:89111341-89111360 None:intergenic 25.0%
! GAAAAGGATTGAAGAAAAAA+GGG - chr8_1:89111352-89111371 None:intergenic 25.0%
! AGAAAAGGATTGAAGAAAAA+AGG - chr8_1:89111353-89111372 None:intergenic 25.0%
!! TTTTCGAAATTCAAATTAGG+TGG - chr8_1:89111559-89111578 None:intergenic 25.0%
!! ACTAATTTAGAGTTTGTTCT+GGG - chr8_1:89111709-89111728 None:intergenic 25.0%
!! AACTAATTTAGAGTTTGTTC+TGG - chr8_1:89111710-89111729 None:intergenic 25.0%
!!! AGTTTATGATTTTTGGAATG+AGG + chr8_1:89111756-89111775 Msa1224310:intron 25.0%
!!! GATGATTTTTTGAAGTTTGA+AGG + chr8_1:89111799-89111818 Msa1224310:intron 25.0%
!!! GTTTTAAAAAGTTGCGATTT+TGG - chr8_1:89110864-89110883 None:intergenic 25.0%
!!! ATCGCAACTTTTTAAAACTT+AGG + chr8_1:89112253-89112272 Msa1224310:intron 25.0%
!!! TCGCAACTTTTTAAAACTTA+GGG + chr8_1:89112254-89112273 Msa1224310:intron 25.0%
! TTATTTATATCATTTGCACC+GGG + chr8_1:89112515-89112534 Msa1224310:intron 25.0%
! AATTCATGATGTGTATAGTA+AGG - chr8_1:89112828-89112847 None:intergenic 25.0%
!!! ATTATCACACTTTTTTGTCG+TGG - chr8_1:89107732-89107751 None:intergenic 30.0%
!!! AGGTTTTTAGAATGTCCATT+TGG + chr8_1:89107769-89107788 Msa1224310:five_prime_UTR 30.0%
!! GACATTATTGCCTATTTTTC+TGG + chr8_1:89107802-89107821 Msa1224310:five_prime_UTR 30.0%
CAGAAATCATCCAGAAAAAT+AGG - chr8_1:89107815-89107834 None:intergenic 30.0%
GAAATTTGAACAACCTTATC+AGG + chr8_1:89107903-89107922 Msa1224310:five_prime_UTR 30.0%
AAGTAGTGTAAGAAAACGAT+TGG - chr8_1:89107934-89107953 None:intergenic 30.0%
GAGATTGAGTGTTAAAAAGT+GGG - chr8_1:89108263-89108282 None:intergenic 30.0%
! CCACATGTATTTTACTCAAT+GGG - chr8_1:89108285-89108304 None:intergenic 30.0%
CCATTGAGTAAAATACATGT+GGG + chr8_1:89108283-89108302 Msa1224310:intron 30.0%
CTTATTGGATGAAATACATG+TGG - chr8_1:89108349-89108368 None:intergenic 30.0%
! CTTTTCAGTGTCAATTCTTA+CGG + chr8_1:89108425-89108444 Msa1224310:intron 30.0%
! TTTTCAGTGTCAATTCTTAC+GGG + chr8_1:89108426-89108445 Msa1224310:intron 30.0%
!! TCTTTTGATGACAACAACAA+TGG - chr8_1:89108730-89108749 None:intergenic 30.0%
AAAAAAACTAAGGGTTTGTC+TGG + chr8_1:89108827-89108846 Msa1224310:intron 30.0%
CTTATTTACTTGAACACTTG+TGG + chr8_1:89108865-89108884 Msa1224310:intron 30.0%
! AATTAGTCTGTTTATCCAAC+AGG + chr8_1:89109064-89109083 Msa1224310:intron 30.0%
! ATTAGTCTGTTTATCCAACA+GGG + chr8_1:89109065-89109084 Msa1224310:intron 30.0%
! TCTTAGAACTTCAACTTTTC+AGG + chr8_1:89109096-89109115 Msa1224310:intron 30.0%
TATACATTGTGGAGATAAAG+GGG - chr8_1:89109311-89109330 None:intergenic 30.0%
GTTATACATTGTGGAGATAA+AGG - chr8_1:89109313-89109332 None:intergenic 30.0%
TCTAACAAGTTACCAAATTG+AGG + chr8_1:89109417-89109436 Msa1224310:CDS 30.0%
CTAACAAGTTACCAAATTGA+GGG + chr8_1:89109418-89109437 Msa1224310:CDS 30.0%
!!! TTGTTTTTATGCCCTCAATT+TGG - chr8_1:89109432-89109451 None:intergenic 30.0%
TGTCACAACACAGAAATAAA+GGG - chr8_1:89109470-89109489 None:intergenic 30.0%
TTGTCACAACACAGAAATAA+AGG - chr8_1:89109471-89109490 None:intergenic 30.0%
!! AGTTTTGCTATAGTGCTATT+TGG - chr8_1:89109523-89109542 None:intergenic 30.0%
AGATTACATTGTTGAGAAAC+AGG + chr8_1:89109606-89109625 Msa1224310:CDS 30.0%
!! TGAAAATTTTGGTCTACAAG+AGG + chr8_1:89109660-89109679 Msa1224310:CDS 30.0%
AATCATGAGCACAAAAAAAG+TGG - chr8_1:89109740-89109759 None:intergenic 30.0%
ATTATCACTAAGTGATCTTG+AGG + chr8_1:89110005-89110024 Msa1224310:CDS 30.0%
AATCTCTGATTATTGCGAAT+TGG - chr8_1:89110127-89110146 None:intergenic 30.0%
! TTTTCCCCGATTTCAAAATA+CGG + chr8_1:89110323-89110342 Msa1224310:intron 30.0%
GTAGATCCTTTAAGTATCAA+AGG - chr8_1:89110481-89110500 None:intergenic 30.0%
!!! GCAACTTTTTAAAACATAGG+GGG - chr8_1:89110859-89110878 None:intergenic 30.0%
!!! CGCAACTTTTTAAAACATAG+GGG - chr8_1:89110860-89110879 None:intergenic 30.0%
TTGACCAAGTCAAAATCATT+GGG - chr8_1:89110954-89110973 None:intergenic 30.0%
TTTGACCAAGTCAAAATCAT+TGG - chr8_1:89110955-89110974 None:intergenic 30.0%
! GTTGATGAAGAAGAAAAGAA+AGG - chr8_1:89111150-89111169 None:intergenic 30.0%
GGAAATGATTGAAGATATTC+TGG - chr8_1:89111205-89111224 None:intergenic 30.0%
AATATGTTGTGTTGTGTTTG+TGG - chr8_1:89111245-89111264 None:intergenic 30.0%
GAAGAAAAAAGGGATTCAAA+TGG - chr8_1:89111342-89111361 None:intergenic 30.0%
! TCTTCAATCCTTTTCTTCTT+CGG + chr8_1:89111357-89111376 Msa1224310:intron 30.0%
ATGCTTGTGGAGTTATTTAT+GGG - chr8_1:89111419-89111438 None:intergenic 30.0%
!! AGCTCTAAAACAAATCTGAA+TGG - chr8_1:89111476-89111495 None:intergenic 30.0%
TCTGTTTATGCAAAGTTTGA+AGG + chr8_1:89111597-89111616 Msa1224310:intron 30.0%
TATGCAAAGTTTGAAGGATT+TGG + chr8_1:89111603-89111622 Msa1224310:intron 30.0%
AACAAAGGGTTTGAATTTGA+AGG + chr8_1:89111637-89111656 Msa1224310:intron 30.0%
!!! CGCAACTTTTTAAAACTTAG+GGG + chr8_1:89112255-89112274 Msa1224310:intron 30.0%
!!! GCAACTTTTTAAAACTTAGG+GGG + chr8_1:89112256-89112275 Msa1224310:intron 30.0%
!! TTTTGGCTAAAATGCACTTT+TGG - chr8_1:89112282-89112301 None:intergenic 30.0%
GCTTAGTGTAGCTAAATTAT+TGG - chr8_1:89112600-89112619 None:intergenic 30.0%
!! GTTTGTTGTATACAAGTTGA+AGG + chr8_1:89112667-89112686 Msa1224310:CDS 30.0%
! TGTATACAAGTTGAAGGAAA+TGG + chr8_1:89112673-89112692 Msa1224310:CDS 30.0%
! GTATACAAGTTGAAGGAAAT+GGG + chr8_1:89112674-89112693 Msa1224310:CDS 30.0%
CTTCTTCTTCTTCTTCTTCA+TGG + chr8_1:89107865-89107884 Msa1224310:five_prime_UTR 35.0%
ACGATTGGATATACCTGATA+AGG - chr8_1:89107919-89107938 None:intergenic 35.0%
!!! TTTTTTCATGAAGAGCTTCG+TGG + chr8_1:89108161-89108180 Msa1224310:intron 35.0%
GTGTTAAAAAGTGGGTCTTA+TGG - chr8_1:89108255-89108274 None:intergenic 35.0%
GGAGATTGAGTGTTAAAAAG+TGG - chr8_1:89108264-89108283 None:intergenic 35.0%
CCCATTGAGTAAAATACATG+TGG + chr8_1:89108282-89108301 Msa1224310:intron 35.0%
! CCCACATGTATTTTACTCAA+TGG - chr8_1:89108286-89108305 None:intergenic 35.0%
TCATCCAATAAGAGAGTGAA+TGG + chr8_1:89108357-89108376 Msa1224310:intron 35.0%
TACACCATTCACTCTCTTAT+TGG - chr8_1:89108364-89108383 None:intergenic 35.0%
AATAAGAGAGTGAATGGTGT+AGG + chr8_1:89108363-89108382 Msa1224310:intron 35.0%
ATAAGAGAGTGAATGGTGTA+GGG + chr8_1:89108364-89108383 Msa1224310:intron 35.0%
TTTCAGTGTCAATTCTTACG+GGG + chr8_1:89108427-89108446 Msa1224310:intron 35.0%
! AATTGGTTCCCAAGACTAAT+CGG + chr8_1:89108506-89108525 Msa1224310:intron 35.0%
AAACTACTTATGACATGCCT+GGG + chr8_1:89108669-89108688 Msa1224310:intron 35.0%
ATCAACTAAAAACAACTCCC+AGG - chr8_1:89108689-89108708 None:intergenic 35.0%
!! GTTGAAGTTCTAAGATGCTT+AGG - chr8_1:89109091-89109110 None:intergenic 35.0%
! AAGAAGCAGAATTCAAGTTC+AGG + chr8_1:89109341-89109360 Msa1224310:CDS 35.0%
ACAATGACTACTGTTGGATA+TGG + chr8_1:89109487-89109506 Msa1224310:CDS 35.0%
TGAAGACATAAATGCATGCA+AGG - chr8_1:89109546-89109565 None:intergenic 35.0%
! AAAATTTTCAGCCTTGCACA+TGG - chr8_1:89109650-89109669 None:intergenic 35.0%
! ATGTGCAAGGCTGAAAATTT+TGG + chr8_1:89109649-89109668 Msa1224310:CDS 35.0%
!!! TTTTTTGTGCTCATGATTGC+AGG + chr8_1:89109742-89109761 Msa1224310:CDS 35.0%
ACTCTATTGTGTTTGTTCCA+CGG + chr8_1:89109810-89109829 Msa1224310:CDS 35.0%
TGAAGATAGACAAAGATCAC+TGG + chr8_1:89109960-89109979 Msa1224310:CDS 35.0%
ACAAAGATCACTGGCAAAAA+TGG + chr8_1:89109969-89109988 Msa1224310:CDS 35.0%
CACTCATAAGTTATGAAGCA+CGG + chr8_1:89110190-89110209 Msa1224310:intron 35.0%
TTTCCCCGATTTCAAAATAC+GGG + chr8_1:89110324-89110343 Msa1224310:intron 35.0%
!!! ATACCCGTATTTTGAAATCG+GGG - chr8_1:89110330-89110349 None:intergenic 35.0%
!!! CATACCCGTATTTTGAAATC+GGG - chr8_1:89110331-89110350 None:intergenic 35.0%
!!! CCATACCCGTATTTTGAAAT+CGG - chr8_1:89110332-89110351 None:intergenic 35.0%
CGATTTCAAAATACGGGTAT+GGG + chr8_1:89110330-89110349 Msa1224310:intron 35.0%
TGTTAAAGTGAGCGTATTGT+TGG + chr8_1:89110522-89110541 Msa1224310:intron 35.0%
AAAATTATTCAATGCGGGGA+CGG + chr8_1:89110602-89110621 Msa1224310:intron 35.0%
TCGGGTAAGTATATGAGAAT+CGG + chr8_1:89110704-89110723 Msa1224310:intron 35.0%
TATCAGATACACGTATCGTT+AGG - chr8_1:89110781-89110800 None:intergenic 35.0%
TGACCAAGTCAAAATCATTG+GGG - chr8_1:89110953-89110972 None:intergenic 35.0%
AAAAGAAAGGAAGAGGAAGA+AGG - chr8_1:89111137-89111156 None:intergenic 35.0%
GAAGAAGAAAAGAAAGGAAG+AGG - chr8_1:89111144-89111163 None:intergenic 35.0%
TGATTGAAGATATTCTGGGT+TGG - chr8_1:89111200-89111219 None:intergenic 35.0%
!!! GTGGTTGTTTTTGATGAAGA+AGG - chr8_1:89111226-89111245 None:intergenic 35.0%
! CGCTTGATTTGAGAATATGA+GGG - chr8_1:89111383-89111402 None:intergenic 35.0%
! ACGCTTGATTTGAGAATATG+AGG - chr8_1:89111384-89111403 None:intergenic 35.0%
CATGCTTGTGGAGTTATTTA+TGG - chr8_1:89111420-89111439 None:intergenic 35.0%
TTGAAGGATTTGGAAGAAGA+AGG + chr8_1:89111613-89111632 Msa1224310:intron 35.0%
TTGGAAGAAGAAGGTAACAA+AGG + chr8_1:89111622-89111641 Msa1224310:intron 35.0%
TGGAAGAAGAAGGTAACAAA+GGG + chr8_1:89111623-89111642 Msa1224310:intron 35.0%
! TTTGAATTTGAAGGTGCAAG+TGG + chr8_1:89111646-89111665 Msa1224310:intron 35.0%
!!! TTTTTGGAATGAGGAAGATG+AGG + chr8_1:89111765-89111784 Msa1224310:intron 35.0%
! TCTTGTTCCTTGTTTCTTTG+AGG + chr8_1:89111833-89111852 Msa1224310:intron 35.0%
TGACCAGGTCAAAATTAAAG+AGG + chr8_1:89112162-89112181 Msa1224310:intron 35.0%
GACCAGGTCAAAATTAAAGA+GGG + chr8_1:89112163-89112182 Msa1224310:intron 35.0%
TAAACAATCACACGTATCTG+AGG + chr8_1:89112337-89112356 Msa1224310:intron 35.0%
ACTCCTTTGATATGTATCGA+CGG + chr8_1:89112429-89112448 Msa1224310:intron 35.0%
TCACTGCTGAAATATCTTCT+TGG - chr8_1:89112709-89112728 None:intergenic 35.0%
AGAAGATATTTCAGCAGTGA+TGG + chr8_1:89112709-89112728 Msa1224310:CDS 35.0%
AAACTAGACTGTGATCAATC+AGG + chr8_1:89112743-89112762 Msa1224310:CDS 35.0%
TAAGGCAGATGATGTTAAGA+TGG - chr8_1:89112810-89112829 None:intergenic 35.0%
!!! ATCACACTTTTTTGTCGTGG+TGG - chr8_1:89107729-89107748 None:intergenic 40.0%
! GAATGTCCATTTGGAAGCAT+CGG + chr8_1:89107778-89107797 Msa1224310:five_prime_UTR 40.0%
! GAAGAAGAAGTTGTCGATTG+AGG - chr8_1:89107843-89107862 None:intergenic 40.0%
!! AGTAAGGACCGATTAGTCTT+GGG - chr8_1:89108517-89108536 None:intergenic 40.0%
AAGACTAATCGGTCCTTACT+GGG + chr8_1:89108517-89108536 Msa1224310:intron 40.0%
TCACTCTTTCTTACCCAGTA+AGG - chr8_1:89108533-89108552 None:intergenic 40.0%
AGGCTGTTTGAGAGAGTTTA+TGG + chr8_1:89108646-89108665 Msa1224310:intron 40.0%
GAAACTACTTATGACATGCC+TGG + chr8_1:89108668-89108687 Msa1224310:intron 40.0%
AACTAAGGGTTTGTCTGGAT+TGG + chr8_1:89108832-89108851 Msa1224310:intron 40.0%
TACTTGAACACTTGTGGTCA+TGG + chr8_1:89108871-89108890 Msa1224310:intron 40.0%
ACTTGAACACTTGTGGTCAT+GGG + chr8_1:89108872-89108891 Msa1224310:intron 40.0%
AGCTATTGCTTTCAGAGTCA+AGG + chr8_1:89109170-89109189 Msa1224310:CDS 40.0%
GCTATTGCTTTCAGAGTCAA+GGG + chr8_1:89109171-89109190 Msa1224310:CDS 40.0%
TTCTTCAGAGAAGAAGACTG+CGG + chr8_1:89109224-89109243 Msa1224310:CDS 40.0%
AATCTGCAGCAAGAACAGAA+TGG + chr8_1:89109274-89109293 Msa1224310:CDS 40.0%
ATTGTGGAGATAAAGGGGTT+TGG - chr8_1:89109306-89109325 None:intergenic 40.0%
TTGTGTTTAGCAGCATACCT+AGG + chr8_1:89109373-89109392 Msa1224310:CDS 40.0%
GTTGTGACAATGACTACTGT+TGG + chr8_1:89109481-89109500 Msa1224310:CDS 40.0%
GCATGCATTTATGTCTTCAC+TGG + chr8_1:89109547-89109566 Msa1224310:CDS 40.0%
CATTTATGTCTTCACTGGCA+TGG + chr8_1:89109552-89109571 Msa1224310:CDS 40.0%
ATAACCTAAAGTAGTGACCG+TGG - chr8_1:89109830-89109849 None:intergenic 40.0%
! ACGGTCACTACTTTAGGTTA+TGG + chr8_1:89109829-89109848 Msa1224310:CDS 40.0%
! CGGTCACTACTTTAGGTTAT+GGG + chr8_1:89109830-89109849 Msa1224310:CDS 40.0%
! GGTCACTACTTTAGGTTATG+GGG + chr8_1:89109831-89109850 Msa1224310:CDS 40.0%
AAACACGGCAAAAATCCTAC+CGG - chr8_1:89109878-89109897 None:intergenic 40.0%
! GTAGGATTTTTGCCGTGTTT+TGG + chr8_1:89109878-89109897 Msa1224310:CDS 40.0%
GCTGCTCAATATCCAAAACA+CGG - chr8_1:89109893-89109912 None:intergenic 40.0%
AAAAGACTGAGCCAAGCAAA+TGG - chr8_1:89109917-89109936 None:intergenic 40.0%
TTGATGGAGACAAAGTTGTC+AGG + chr8_1:89110037-89110056 Msa1224310:CDS 40.0%
AAAACCCGTCAAATTGGGTT+TGG - chr8_1:89110269-89110288 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - chr8_1:89110294-89110313 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + chr8_1:89110294-89110313 Msa1224310:intron 40.0%
CCGATTTCAAAATACGGGTA+TGG + chr8_1:89110329-89110348 Msa1224310:intron 40.0%
TTCAAAATACGGGTATGGGA+CGG + chr8_1:89110334-89110353 Msa1224310:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG - chr8_1:89110395-89110414 None:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG - chr8_1:89110396-89110415 None:intergenic 40.0%
AAATTATTCAATGCGGGGAC+GGG + chr8_1:89110603-89110622 Msa1224310:intron 40.0%
ATTCAATTTCTCATCCCCGT+TGG + chr8_1:89110667-89110686 Msa1224310:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG + chr8_1:89110668-89110687 Msa1224310:intron 40.0%
CGGGTAAGTATATGAGAATC+GGG + chr8_1:89110705-89110724 Msa1224310:intron 40.0%
GTATATGAGAATCGGGTATG+TGG + chr8_1:89110712-89110731 Msa1224310:intron 40.0%
GACCAAGTCAAAATCATTGG+GGG - chr8_1:89110952-89110971 None:intergenic 40.0%
!!! TTTTGACTTGGTCAAAGCAC+AGG + chr8_1:89110959-89110978 Msa1224310:intron 40.0%
! TAGAAAGAGAAGCATGCTTG+TGG - chr8_1:89111432-89111451 None:intergenic 40.0%
ACTGTGTAAGAGAAGAGAAG+AGG + chr8_1:89111496-89111515 Msa1224310:intron 40.0%
GCATGGAAGAAGAGAGAAAA+CGG - chr8_1:89111524-89111543 None:intergenic 40.0%
! TGTTCCTTGTTTCTTTGAGG+AGG + chr8_1:89111836-89111855 Msa1224310:intron 40.0%
! GTTCCTTGTTTCTTTGAGGA+GGG + chr8_1:89111837-89111856 Msa1224310:intron 40.0%
AAACCCTCCTCAAAGAAACA+AGG - chr8_1:89111843-89111862 None:intergenic 40.0%
! TTGTTTCTTTGAGGAGGGTT+TGG + chr8_1:89111842-89111861 Msa1224310:intron 40.0%
GGAAAGAGAAGAGCAGATTA+TGG + chr8_1:89111951-89111970 Msa1224310:intron 40.0%
AAGAGAAGAGCAGATTATGG+TGG + chr8_1:89111954-89111973 Msa1224310:intron 40.0%
AGAGAAGAGCAGATTATGGT+GGG + chr8_1:89111955-89111974 Msa1224310:intron 40.0%
AAAGGTTAGAGAGAGAGACT+AGG + chr8_1:89111986-89112005 Msa1224310:intron 40.0%
! TTTTGACCTGGTCAAAACCA+AGG - chr8_1:89112156-89112175 None:intergenic 40.0%
AGGGCCTATGAATTGCAAAA+GGG + chr8_1:89112182-89112201 Msa1224310:intron 40.0%
TATGATCTTACTGCATCTCC+CGG - chr8_1:89112536-89112555 None:intergenic 40.0%
TCAACGCAATACTAGTGATG+AGG - chr8_1:89112568-89112587 None:intergenic 40.0%
!!! CTTTTTTGTCGTGGTGGACT+AGG - chr8_1:89107723-89107742 None:intergenic 45.0%
ATGTCTCCGATGCTTCCAAA+TGG - chr8_1:89107787-89107806 None:intergenic 45.0%
GTGGTTCAGACTTCAGAACA+TGG + chr8_1:89108180-89108199 Msa1224310:intron 45.0%
ACATGTGGGTCCCATTGTTA+CGG + chr8_1:89108297-89108316 Msa1224310:intron 45.0%
TTAAATGTGCCCCTTGCAAG+CGG + chr8_1:89108476-89108495 Msa1224310:intron 45.0%
!! CAGTAAGGACCGATTAGTCT+TGG - chr8_1:89108518-89108537 None:intergenic 45.0%
CAAGACTAATCGGTCCTTAC+TGG + chr8_1:89108516-89108535 Msa1224310:intron 45.0%
ACTGGGTAAGAAAGAGTGAG+TGG + chr8_1:89108534-89108553 Msa1224310:intron 45.0%
TACCGGTAAAACCACTTGTG+AGG + chr8_1:89108626-89108645 Msa1224310:intron 45.0%
!! AGCCTCACAAGTGGTTTTAC+CGG - chr8_1:89108631-89108650 None:intergenic 45.0%
! GCAGTCTTCTTCTCTGAAGA+AGG - chr8_1:89109225-89109244 None:intergenic 45.0%
! AACATAAGGTACCTGTGCCT+AGG - chr8_1:89109393-89109412 None:intergenic 45.0%
TGTTCCACGGTCACTACTTT+AGG + chr8_1:89109823-89109842 Msa1224310:CDS 45.0%
ATTGAGCAGCACCATTTGCT+TGG + chr8_1:89109903-89109922 Msa1224310:CDS 45.0%
AGCAGACACTTCACAATTGC+AGG + chr8_1:89110091-89110110 Msa1224310:intron 45.0%
GCAGACACTTCACAATTGCA+GGG + chr8_1:89110092-89110111 Msa1224310:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG - chr8_1:89110259-89110278 None:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG - chr8_1:89110263-89110282 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - chr8_1:89110264-89110283 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG + chr8_1:89110261-89110280 Msa1224310:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG + chr8_1:89110262-89110281 Msa1224310:intron 45.0%
TACCCAAACCCAGTCAAAAC+GGG - chr8_1:89110293-89110312 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + chr8_1:89110293-89110312 Msa1224310:intron 45.0%
TCAAAATACGGGTATGGGAC+GGG + chr8_1:89110335-89110354 Msa1224310:intron 45.0%
ATGAGAATCGGGTATGTGGA+TGG + chr8_1:89110716-89110735 Msa1224310:intron 45.0%
TGAGAATCGGGTATGTGGAT+GGG + chr8_1:89110717-89110736 Msa1224310:intron 45.0%
TATCGTTAGGCATGGCAATG+GGG - chr8_1:89110768-89110787 None:intergenic 45.0%
GTATCGTTAGGCATGGCAAT+GGG - chr8_1:89110769-89110788 None:intergenic 45.0%
GATACACGTATCGTTAGGCA+TGG - chr8_1:89110776-89110795 None:intergenic 45.0%
TTGCAAAAGGGGGTGAAGTT+GGG - chr8_1:89112194-89112213 None:intergenic 45.0%
! CACCCCCTTTTGCAACTTAT+AGG + chr8_1:89110926-89110945 Msa1224310:intron 45.0%
GGCCTATAAGTTGCAAAAGG+GGG - chr8_1:89110931-89110950 None:intergenic 45.0%
GGGCCTATAAGTTGCAAAAG+GGG - chr8_1:89110932-89110951 None:intergenic 45.0%
GGGGCCTATAAGTTGCAAAA+GGG - chr8_1:89110933-89110952 None:intergenic 45.0%
AAGAGAGAAACGATGAGGTG+GGG - chr8_1:89111110-89111129 None:intergenic 45.0%
GAAGAGAGAAACGATGAGGT+GGG - chr8_1:89111111-89111130 None:intergenic 45.0%
GAAAGGAAGAGGAAGAAGGA+GGG - chr8_1:89111133-89111152 None:intergenic 45.0%
AGAAAGGAAGAGGAAGAAGG+AGG - chr8_1:89111134-89111153 None:intergenic 45.0%
TATGAGGGCCGAAGAAGAAA+AGG - chr8_1:89111368-89111387 None:intergenic 45.0%
! GAATTTGAAGGTGCAAGTGG+TGG + chr8_1:89111649-89111668 Msa1224310:intron 45.0%
TGGAATGAGGAAGATGAGGA+AGG + chr8_1:89111769-89111788 Msa1224310:intron 45.0%
TGAGGAGGGTTTGGATTTCA+CGG + chr8_1:89111851-89111870 Msa1224310:intron 45.0%
TAGTGGTGAGCGATCTTTGA+GGG + chr8_1:89111878-89111897 Msa1224310:intron 45.0%
ATGAGATAGGTAGTTCGTCG+CGG + chr8_1:89111926-89111945 Msa1224310:intron 45.0%
GAGAAGAGCAGATTATGGTG+GGG + chr8_1:89111956-89111975 Msa1224310:intron 45.0%
AGAAGAGCAGATTATGGTGG+GGG + chr8_1:89111957-89111976 Msa1224310:intron 45.0%
TAGGTTAGAGAGAGAGAGAG+AGG + chr8_1:89112005-89112024 Msa1224310:intron 45.0%
! TCAAAACCAAGGTGCCCAAT+AGG - chr8_1:89112145-89112164 None:intergenic 45.0%
!! GGCCCTCTTTAATTTTGACC+TGG - chr8_1:89112168-89112187 None:intergenic 45.0%
GAGGGCCTATGAATTGCAAA+AGG + chr8_1:89112181-89112200 Msa1224310:intron 45.0%
GGGCCTATGAATTGCAAAAG+GGG + chr8_1:89112183-89112202 Msa1224310:intron 45.0%
GGCCTATGAATTGCAAAAGG+GGG + chr8_1:89112184-89112203 Msa1224310:intron 45.0%
! CACCCCCTTTTGCAATTCAT+AGG - chr8_1:89112189-89112208 None:intergenic 45.0%
ATTGCAAAAGGGGGTGAAGT+TGG + chr8_1:89112193-89112212 Msa1224310:intron 45.0%
TTGCAAAAGGGGGTGAAGTT+GGG + chr8_1:89112194-89112213 Msa1224310:intron 45.0%
ACGCCGTCGATACATATCAA+AGG - chr8_1:89112435-89112454 None:intergenic 45.0%
ACAACAAACTCTGCAGCACT+GGG - chr8_1:89112656-89112675 None:intergenic 45.0%
TACAACAAACTCTGCAGCAC+TGG - chr8_1:89112657-89112676 None:intergenic 45.0%
!! ACATTTATAAAAAAAAATAA+AGG + chr8_1:89110816-89110835 Msa1224310:intron 5.0%
!! ATAAAAAAAAAAGAATTAAA+AGG + chr8_1:89111074-89111093 Msa1224310:intron 5.0%
!! TAAAAAAAAAAGAATTAAAA+GGG + chr8_1:89111075-89111094 Msa1224310:intron 5.0%
!! TGTCGTGGTGGACTAGGAAT+AGG - chr8_1:89107717-89107736 None:intergenic 50.0%
CATGTGGGTCCCATTGTTAC+GGG + chr8_1:89108298-89108317 Msa1224310:intron 50.0%
CTCTCAAACAGCCTCACAAG+TGG - chr8_1:89108640-89108659 None:intergenic 50.0%
CTAAGATGCTTAGGCCCTGT+TGG - chr8_1:89109082-89109101 None:intergenic 50.0%
GTGGAGATAAAGGGGTTTGG+AGG - chr8_1:89109303-89109322 None:intergenic 50.0%
TTAGCAGCATACCTAGGCAC+AGG + chr8_1:89109379-89109398 Msa1224310:CDS 50.0%
TCTTGCTGAGTCCATGTGCA+AGG + chr8_1:89109636-89109655 Msa1224310:CDS 50.0%
CTTGAGGCAGCAGATCTTGA+TGG + chr8_1:89110021-89110040 Msa1224310:CDS 50.0%
GGCAACAAAACCCATACCCA+CGG + chr8_1:89110230-89110249 Msa1224310:intron 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG - chr8_1:89110260-89110279 None:intergenic 50.0%
CGGGGAAAACCCGTCAAATT+GGG - chr8_1:89110274-89110293 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG - chr8_1:89110275-89110294 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + chr8_1:89110282-89110301 Msa1224310:intron 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + chr8_1:89110287-89110306 Msa1224310:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + chr8_1:89110288-89110307 Msa1224310:intron 50.0%
ACCCAAACCCAGTCAAAACG+GGG - chr8_1:89110292-89110311 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG + chr8_1:89110299-89110318 Msa1224310:intron 50.0%
CTGGGTTTGGGTATGGGTAT+GGG + chr8_1:89110300-89110319 Msa1224310:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG - chr8_1:89110389-89110408 None:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG - chr8_1:89110390-89110409 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG + chr8_1:89110673-89110692 Msa1224310:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + chr8_1:89110674-89110693 Msa1224310:intron 50.0%
ATACCCTACCCATACCCAAC+GGG - chr8_1:89110685-89110704 None:intergenic 50.0%
GATACCCTACCCATACCCAA+CGG - chr8_1:89110686-89110705 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAT+CGG + chr8_1:89110685-89110704 Msa1224310:intron 50.0%
! TTGGGTATGGGTAGGGTATC+GGG + chr8_1:89110686-89110705 Msa1224310:intron 50.0%
GAGAATCGGGTATGTGGATG+GGG + chr8_1:89110718-89110737 Msa1224310:intron 50.0%
CGTATCGTTAGGCATGGCAA+TGG - chr8_1:89110770-89110789 None:intergenic 50.0%
TGCAAAAGGGGGTGAAGTTG+GGG - chr8_1:89112195-89112214 None:intergenic 50.0%
GTTGCAAAAGGGGGTGAAGT+TGG - chr8_1:89110922-89110941 None:intergenic 50.0%
GGGGGCCTATAAGTTGCAAA+AGG - chr8_1:89110934-89110953 None:intergenic 50.0%
!!! GGCCCCCAATGATTTTGACT+TGG + chr8_1:89110947-89110966 Msa1224310:intron 50.0%
!! TGACTTGGTCAAAGCACAGG+TGG + chr8_1:89110962-89110981 Msa1224310:intron 50.0%
AGAGAGAAACGATGAGGTGG+GGG - chr8_1:89111109-89111128 None:intergenic 50.0%
GGAAGAGAGAAACGATGAGG+TGG - chr8_1:89111112-89111131 None:intergenic 50.0%
GAGGGAAGAGAGAAACGATG+AGG - chr8_1:89111115-89111134 None:intergenic 50.0%
GGTGGTTGTGAAATCGAGCA+TGG - chr8_1:89111541-89111560 None:intergenic 50.0%
TTGGATTTCACGGTGGCTAG+TGG + chr8_1:89111861-89111880 Msa1224310:intron 50.0%
CTAGTGGTGAGCGATCTTTG+AGG + chr8_1:89111877-89111896 Msa1224310:intron 50.0%
TGGAGGAGGAGGAATGAGAT+AGG + chr8_1:89111913-89111932 Msa1224310:intron 50.0%
! TTATGGTGGGGGTAGGTGAA+AGG + chr8_1:89111968-89111987 Msa1224310:intron 50.0%
! AAACCAAGGTGCCCAATAGG+AGG - chr8_1:89112142-89112161 None:intergenic 50.0%
TGCAAAAGGGGGTGAAGTTG+GGG + chr8_1:89112195-89112214 Msa1224310:intron 50.0%
TCTTCACCGCGATGAGTGCT+AGG + chr8_1:89108221-89108240 Msa1224310:intron 55.0%
CTTCACCGCGATGAGTGCTA+GGG + chr8_1:89108222-89108241 Msa1224310:intron 55.0%
AGTGTCCCTAGCACTCATCG+CGG - chr8_1:89108230-89108249 None:intergenic 55.0%
GGGGCTACTCCCGTAACAAT+GGG - chr8_1:89108310-89108329 None:intergenic 55.0%
TGGGGCTACTCCCGTAACAA+TGG - chr8_1:89108311-89108330 None:intergenic 55.0%
AGTAGCCCCACGTAAAGTGG+TGG + chr8_1:89108321-89108340 Msa1224310:intron 55.0%
GTAGCCCCACGTAAAGTGGT+GGG + chr8_1:89108322-89108341 Msa1224310:intron 55.0%
TAGCCCCACGTAAAGTGGTG+GGG + chr8_1:89108323-89108342 Msa1224310:intron 55.0%
ATTCCACCGTCCGCTTGCAA+GGG - chr8_1:89108489-89108508 None:intergenic 55.0%
AATTCCACCGTCCGCTTGCA+AGG - chr8_1:89108490-89108509 None:intergenic 55.0%
TTGCAAGCGGACGGTGGAAT+TGG + chr8_1:89108489-89108508 Msa1224310:intron 55.0%
GTCTTCACTGGCATGGCTCT+CGG + chr8_1:89109559-89109578 Msa1224310:CDS 55.0%
AAGAGCTTCTCGACTGCTGC+CGG + chr8_1:89109856-89109875 Msa1224310:CDS 55.0%
GAAGCACGGACACGATACGT+AGG + chr8_1:89110204-89110223 Msa1224310:intron 55.0%
ACGGACACGATACGTAGGCA+TGG + chr8_1:89110209-89110228 Msa1224310:intron 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + chr8_1:89110281-89110300 Msa1224310:intron 55.0%
TACGGGTATGGGACGGGTAA+CGG + chr8_1:89110341-89110360 Msa1224310:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + chr8_1:89110350-89110369 Msa1224310:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG - chr8_1:89110378-89110397 None:intergenic 55.0%
ACGGGTTTGGGTATGGGTTC+GGG - chr8_1:89110383-89110402 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG - chr8_1:89110384-89110403 None:intergenic 55.0%
TATTCAATGCGGGGACGGGA+TGG + chr8_1:89110607-89110626 Msa1224310:intron 55.0%
ATTCAATGCGGGGACGGGAT+GGG + chr8_1:89110608-89110627 Msa1224310:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG + chr8_1:89110679-89110698 Msa1224310:intron 55.0%
TACCCTACCCATACCCAACG+GGG - chr8_1:89110684-89110703 None:intergenic 55.0%
ATCGGGTATGTGGATGGGGA+AGG + chr8_1:89110722-89110741 Msa1224310:intron 55.0%
CAAAAGGGGGTGAAGTTGGG+GGG - chr8_1:89112197-89112216 None:intergenic 55.0%
GCAAAAGGGGGTGAAGTTGG+GGG - chr8_1:89112196-89112215 None:intergenic 55.0%
AAGCACAGGTGGCCAGTAGA+TGG + chr8_1:89110973-89110992 Msa1224310:intron 55.0%
GGAGGGTTTGGATTTCACGG+TGG + chr8_1:89111854-89111873 Msa1224310:intron 55.0%
! TGGTGAGCGATCTTTGAGGG+CGG + chr8_1:89111881-89111900 Msa1224310:intron 55.0%
! ATCTTTGAGGGCGGTGGTTG+AGG + chr8_1:89111890-89111909 Msa1224310:intron 55.0%
AGATAGGTAGTTCGTCGCGG+CGG + chr8_1:89111929-89111948 Msa1224310:intron 55.0%
! GAGCAGATTATGGTGGGGGT+AGG + chr8_1:89111961-89111980 Msa1224310:intron 55.0%
TCCACGTGGCATCCTCCTAT+TGG + chr8_1:89112127-89112146 Msa1224310:intron 55.0%
CCACGTGGCATCCTCCTATT+GGG + chr8_1:89112128-89112147 Msa1224310:intron 55.0%
CATCCTCCTATTGGGCACCT+TGG + chr8_1:89112136-89112155 Msa1224310:intron 55.0%
!!! TGGGCACCTTGGTTTTGACC+AGG + chr8_1:89112147-89112166 Msa1224310:intron 55.0%
GCAAAAGGGGGTGAAGTTGG+GGG + chr8_1:89112196-89112215 Msa1224310:intron 55.0%
CAAAAGGGGGTGAAGTTGGG+GGG + chr8_1:89112197-89112216 Msa1224310:intron 55.0%
GGGAGTAGCCCCACGTAAAG+TGG + chr8_1:89108318-89108337 Msa1224310:intron 60.0%
TGGCCCCACCACTTTACGTG+GGG - chr8_1:89108329-89108348 None:intergenic 60.0%
GTGGCCCCACCACTTTACGT+GGG - chr8_1:89108330-89108349 None:intergenic 60.0%
TGTGGCCCCACCACTTTACG+TGG - chr8_1:89108331-89108350 None:intergenic 60.0%
ATGTGCCCCTTGCAAGCGGA+CGG + chr8_1:89108480-89108499 Msa1224310:intron 60.0%
TTCCACCGTCCGCTTGCAAG+GGG - chr8_1:89108488-89108507 None:intergenic 60.0%
CAGAGAAGAAGACTGCGGCG+TGG + chr8_1:89109229-89109248 Msa1224310:CDS 60.0%
AGAAGAAGACTGCGGCGTGG+CGG + chr8_1:89109232-89109251 Msa1224310:CDS 60.0%
TTCACTGGCATGGCTCTCGG+TGG + chr8_1:89109562-89109581 Msa1224310:CDS 60.0%
GGGTGGGTAACCGTGGGTAT+GGG - chr8_1:89110243-89110262 None:intergenic 60.0%
! TGGTTCGGGTGGGTAACCGT+GGG - chr8_1:89110249-89110268 None:intergenic 60.0%
!! TTGGTTCGGGTGGGTAACCG+TGG - chr8_1:89110250-89110269 None:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG + chr8_1:89110342-89110361 Msa1224310:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG - chr8_1:89110379-89110398 None:intergenic 60.0%
CGGGTTTGGGTATGGGTTCG+GGG - chr8_1:89110382-89110401 None:intergenic 60.0%
TTCAATGCGGGGACGGGATG+GGG + chr8_1:89110609-89110628 Msa1224310:intron 60.0%
ATACCCAAACCCGTCGGGGA+CGG + chr8_1:89110637-89110656 Msa1224310:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG + chr8_1:89110678-89110697 Msa1224310:intron 60.0%
TTAGGCATGGCAATGGGGCG+GGG - chr8_1:89110763-89110782 None:intergenic 60.0%
GTTAGGCATGGCAATGGGGC+GGG - chr8_1:89110764-89110783 None:intergenic 60.0%
CGTTAGGCATGGCAATGGGG+CGG - chr8_1:89110765-89110784 None:intergenic 60.0%
GAGAAACGATGAGGTGGGGG+TGG - chr8_1:89111106-89111125 None:intergenic 60.0%
! TGAGCGATCTTTGAGGGCGG+TGG + chr8_1:89111884-89111903 Msa1224310:intron 60.0%
TTTGAGGGCGGTGGTTGAGG+TGG + chr8_1:89111893-89111912 Msa1224310:intron 60.0%
GATAGGTAGTTCGTCGCGGC+GGG + chr8_1:89111930-89111949 Msa1224310:intron 60.0%
CCCAATAGGAGGATGCCACG+TGG - chr8_1:89112131-89112150 None:intergenic 60.0%
! CACACGTATCTGAGGCGTGC+TGG + chr8_1:89112345-89112364 Msa1224310:intron 60.0%
! GAGACGTGTCGACGGCGTAT+CGG + chr8_1:89112367-89112386 Msa1224310:intron 60.0%
GCTTCTCGACTGCTGCCGGT+AGG + chr8_1:89109860-89109879 Msa1224310:CDS 65.0%
CGGGTGGGTAACCGTGGGTA+TGG - chr8_1:89110244-89110263 None:intergenic 65.0%
GCGGGGATACCCAAACCCGT+CGG + chr8_1:89110631-89110650 Msa1224310:intron 65.0%
CGGGGATACCCAAACCCGTC+GGG + chr8_1:89110632-89110651 Msa1224310:intron 65.0%
GGGGATACCCAAACCCGTCG+GGG + chr8_1:89110633-89110652 Msa1224310:intron 65.0%
TACCCAAACCCGTCGGGGAC+GGG + chr8_1:89110638-89110657 Msa1224310:intron 65.0%
AATCCCATCCCCGTCCCCGA+CGG - chr8_1:89110650-89110669 None:intergenic 65.0%
GCCAGTAGATGGACGCCACG+TGG + chr8_1:89110984-89111003 Msa1224310:intron 65.0%
GCCACGTGGCGTCCATCTAC+TGG - chr8_1:89110988-89111007 None:intergenic 65.0%
GGTGGTTGAGGTGGAGGAGG+AGG + chr8_1:89111902-89111921 Msa1224310:intron 65.0%
GCGTGCTGGAGACGTGTCGA+CGG + chr8_1:89112359-89112378 Msa1224310:intron 65.0%
TGCCCCTTGCAAGCGGACGG+TGG + chr8_1:89108483-89108502 Msa1224310:intron 70.0%
AATGCGGGGACGGGATGGGG+CGG + chr8_1:89110612-89110631 Msa1224310:intron 70.0%
ACCCAAACCCGTCGGGGACG+GGG + chr8_1:89110639-89110658 Msa1224310:intron 70.0%
! TCCCCGTCCCCGACGGGTTT+GGG - chr8_1:89110643-89110662 None:intergenic 70.0%
! ATCCCCGTCCCCGACGGGTT+TGG - chr8_1:89110644-89110663 None:intergenic 70.0%
AAACCCGTCGGGGACGGGGA+TGG + chr8_1:89110643-89110662 Msa1224310:intron 70.0%
AACCCGTCGGGGACGGGGAT+GGG + chr8_1:89110644-89110663 Msa1224310:intron 70.0%
ATCCCATCCCCGTCCCCGAC+GGG - chr8_1:89110649-89110668 None:intergenic 70.0%
CAATGGGGCGGGGTGGGGAT+GGG - chr8_1:89110753-89110772 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr8_1:89110758-89110777 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG - chr8_1:89110759-89110778 None:intergenic 70.0%
AGGGGGTGAAGTTGGGGGGC+TGG - chr8_1:89112201-89112220 None:intergenic 70.0%
GAGGGCGGTGGTTGAGGTGG+AGG + chr8_1:89111896-89111915 Msa1224310:intron 70.0%
GGCGGTGGTTGAGGTGGAGG+AGG + chr8_1:89111899-89111918 Msa1224310:intron 70.0%
AGGGGGTGAAGTTGGGGGGC+TGG + chr8_1:89112201-89112220 Msa1224310:intron 70.0%
ATGCGGGGACGGGATGGGGC+GGG + chr8_1:89110613-89110632 Msa1224310:intron 75.0%
GCAATGGGGCGGGGTGGGGA+TGG - chr8_1:89110754-89110773 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - chr8_1:89110760-89110779 None:intergenic 75.0%
! TGCGGGGACGGGATGGGGCG+GGG + chr8_1:89110614-89110633 Msa1224310:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89107693 89112989 89107693 ID=Msa1224310;Name=Msa1224310
chr8_1 mRNA 89107693 89112989 89107693 ID=Msa1224310-mRNA-1;Parent=Msa1224310;Name=Msa1224310-mRNA-1;_AED=0.10;_eAED=0.10;_QI=262|1|1|1|0.5|0.66|3|184|352
chr8_1 exon 89107693 89107924 89107693 ID=Msa1224310-mRNA-1:exon:32374;Parent=Msa1224310-mRNA-1
chr8_1 exon 89109118 89110058 89109118 ID=Msa1224310-mRNA-1:exon:32375;Parent=Msa1224310-mRNA-1
chr8_1 exon 89112658 89112989 89112658 ID=Msa1224310-mRNA-1:exon:32376;Parent=Msa1224310-mRNA-1
chr8_1 five_prime_UTR 89107693 89107924 89107693 ID=Msa1224310-mRNA-1:five_prime_utr;Parent=Msa1224310-mRNA-1
chr8_1 five_prime_UTR 89109118 89109147 89109118 ID=Msa1224310-mRNA-1:five_prime_utr;Parent=Msa1224310-mRNA-1
chr8_1 CDS 89109148 89110058 89109148 ID=Msa1224310-mRNA-1:cds;Parent=Msa1224310-mRNA-1
chr8_1 CDS 89112658 89112805 89112658 ID=Msa1224310-mRNA-1:cds;Parent=Msa1224310-mRNA-1
chr8_1 three_prime_UTR 89112806 89112989 89112806 ID=Msa1224310-mRNA-1:three_prime_utr;Parent=Msa1224310-mRNA-1
Gene Sequence

>Msa1224310

ATGGGCAGTGATGAAGCTCAACAGCTATTGCTTTCAGAGTCAAGGGAACATTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACTGCGGCGTGGCGGAACTTCAGAGACAGATATCAATCTGCAGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTATCTCCACAATGTATAACTGATAAACAAGAAGCAGAATTCAAGTTCAGGCTAGTGTTCTTGTGTTTAGCAGCATACCTAGGCACAGGTACCTTATGTTTCTATCTAACAAGTTACCAAATTGAGGGCATAAAAACAAATAATTTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCAAATAGCACTATAGCAAAACTCCTTGCATGCATTTATGTCTTCACTGGCATGGCTCTCGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAGAAACAGGAAATATTTCTTGCTGAGTCCATGTGCAAGGCTGAAAATTTTGGTCTACAAGAGGTTGCTAAAGAGCTTGAAACTAAGAAAAGCAAATACAAGTTTGTGCTTGCAGTAGCCACTTTTTTTGTGCTCATGATTGCAGGAACTGTTTTTCTGTATTTTATTGAGAATCTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACGGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTGCTGCCGGTAGGATTTTTGCCGTGTTTTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTGGCAAAAATGGTTCTCACCCGAAAATTATCACTAAGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGTTGTCAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTCAGCAGTGATGGAGAGTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTTTGAATTCTGA

Protein sequence

>Msa1224310

MGSDEAQQLLLSESREHSHLNEKSDLLQRRRLRRGGTSETDINLQQEQNGVLQTPLSPQCITDKQEAEFKFRLVFLCLAAYLGTGTLCFYLTSYQIEGIKTNNFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFLAESMCKAENFGLQEVAKELETKKSKYKFVLAVATFFVLMIAGTVFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTAAGRIFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLTRKLSLSDLEAADLDGDKVVSAAEFVVYKLKEMGKINQEDISAVMESFRKLDCDQSGTLTEADIRNFEF*