AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296640 MtrunA17_Chr2g0319311 93.391 348 3 1 1 328 1 348 0.0 662
Msa0296640 MtrunA17_Chr4g0076011 60.417 336 84 6 10 345 1 287 4.37e-115 342
Msa0296640 MtrunA17_Chr6g0454101 43.824 340 169 4 10 328 1 339 8.21e-92 284
Msa0296640 MtrunA17_Chr7g0218571 43.478 345 168 4 10 328 1 344 1.08e-91 284
Msa0296640 MtrunA17_Chr3g0097091 33.815 346 190 7 10 328 1 334 1.59e-52 181
Msa0296640 MtrunA17_Chr2g0283461 31.553 206 121 5 124 328 163 349 5.47e-29 117
Msa0296640 MtrunA17_Chr8g0351091 33.166 199 123 2 130 328 238 426 8.83e-29 117
Msa0296640 MtrunA17_Chr2g0290961 32.161 199 121 2 130 328 297 481 1.21e-26 110
Msa0296640 MtrunA17_Chr4g0061711 30.693 202 114 5 134 328 168 350 3.72e-26 108
Msa0296640 MtrunA17_Chr8g0383241 30.653 199 121 3 130 328 124 305 2.40e-25 106
Msa0296640 MtrunA17_Chr2g0277591 29.612 206 125 4 124 328 163 349 7.65e-25 105
Msa0296640 MtrunA17_Chr3g0138381 30.653 199 128 2 130 328 291 479 2.36e-24 104
Msa0296640 MtrunA17_Chr2g0308241 30.986 213 129 6 120 328 152 350 1.57e-23 101
Msa0296640 MtrunA17_Chr7g0246371 33.668 199 120 2 130 328 292 478 2.16e-23 101
Msa0296640 MtrunA17_Chr7g0235161 33.891 239 142 6 93 328 149 374 1.07e-21 96.3
Msa0296640 MtrunA17_Chr6g0456071 30.275 218 136 6 115 328 164 369 1.13e-20 93.2
Msa0296640 MtrunA17_Chr7g0260711 28.492 179 91 3 150 328 324 465 1.09e-17 84.3
Msa0296640 MtrunA17_Chr1g0184751 29.851 134 87 2 135 266 252 380 5.95e-13 69.7
Msa0296640 MtrunA17_Chr7g0245621 32.407 108 69 1 155 262 311 414 7.14e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296640 AT5G54690.1 74.780 341 64 3 10 328 1 341 1.02e-169 483
Msa0296640 AT3G01040.2 44.412 340 167 3 10 328 1 339 7.11e-95 292
Msa0296640 AT3G01040.3 44.412 340 167 3 10 328 1 339 7.11e-95 292
Msa0296640 AT5G15470.1 44.118 340 168 3 10 328 1 339 1.43e-94 291
Msa0296640 AT3G01040.1 40.000 340 149 4 10 328 1 306 5.74e-73 234
Msa0296640 AT3G58790.1 35.220 318 167 7 40 328 39 346 2.10e-47 168
Msa0296640 AT3G58790.2 42.365 203 107 2 130 328 18 214 2.02e-46 162
Msa0296640 AT1G18580.1 30.986 213 135 4 118 328 150 352 1.28e-30 122
Msa0296640 AT5G47780.1 34.171 199 117 2 130 328 246 430 7.73e-29 117
Msa0296640 AT2G20810.1 33.173 208 117 6 124 328 164 352 9.63e-28 114
Msa0296640 AT3G61130.1 33.171 205 116 3 124 328 304 487 1.91e-27 113
Msa0296640 AT3G25140.1 33.641 217 131 4 115 328 167 373 1.47e-24 104
Msa0296640 AT2G46480.2 34.078 179 108 2 150 328 186 354 2.70e-24 103
Msa0296640 AT2G46480.1 34.078 179 108 2 150 328 199 367 3.20e-24 103
Msa0296640 AT2G46480.3 34.078 179 108 2 150 328 186 354 3.58e-24 103
Msa0296640 AT2G46480.4 34.078 179 108 2 150 328 199 367 4.08e-24 103
Msa0296640 AT3G02350.1 33.495 206 124 4 124 328 182 375 8.10e-24 102
Msa0296640 AT4G38270.1 31.696 224 134 5 111 328 284 494 3.97e-23 100
Msa0296640 AT4G38270.2 31.696 224 134 5 111 328 280 490 4.54e-23 100
Msa0296640 AT2G30575.1 28.141 199 107 4 130 328 259 421 1.14e-16 81.6
Msa0296640 AT1G06780.2 26.804 194 107 4 135 328 255 413 1.32e-16 81.3
Msa0296640 AT1G06780.1 26.804 194 107 4 135 328 242 400 1.51e-16 81.3
Msa0296640 AT2G38650.3 37.273 110 63 3 146 255 282 385 9.28e-15 75.5
Msa0296640 AT2G38650.2 33.333 126 79 2 130 255 265 385 1.54e-14 75.1
Msa0296640 AT2G38650.1 33.333 126 79 2 130 255 265 385 1.54e-14 75.1

Find 272 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTAGGGCCAAGAATTT+TGG 0.121386 2_3:-50042823 Msa0296640:CDS
TAGAATGATGATGCCATTTA+AGG 0.125675 2_3:-50039039 Msa0296640:three_prime_UTR
TATATTGTGTATGTCTATTT+TGG 0.156127 2_3:-50044295 Msa0296640:exon
TCTTCCTCAAATGCCCATTT+TGG 0.175377 2_3:-50039726 Msa0296640:three_prime_UTR
TCCACGTTATAGATCCTTTC+TGG 0.192422 2_3:-50040876 Msa0296640:three_prime_UTR
CCTCTGTTTAAAACCTTAAA+TGG 0.194393 2_3:+50039026 None:intergenic
ATATAGATACTCTTGGATTT+TGG 0.205827 2_3:+50042239 None:intergenic
TAACTGTTTACGACCTAATA+AGG 0.231203 2_3:-50042010 Msa0296640:CDS
AAAGTTTGGTATATCACTTC+TGG 0.235664 2_3:+50042664 None:intergenic
ACCTAACCTTGCTTAGCATT+TGG 0.237670 2_3:+50044516 None:intergenic
CATTTGTCTTTATTGTATTA+TGG 0.238562 2_3:+50041089 None:intergenic
CAAATGATTAAGATCTTAAT+TGG 0.241018 2_3:-50039486 Msa0296640:three_prime_UTR
TGATGATGGATTGGAAATTT+TGG 0.242376 2_3:-50039088 Msa0296640:three_prime_UTR
AACTGAAACAACCAAGATTT+CGG 0.245251 2_3:+50039370 None:intergenic
CGTCGAGACGCCTTTCTTAT+AGG 0.248946 2_3:-50044173 Msa0296640:CDS
ATACATCTACCCGAGGTAAA+AGG 0.255584 2_3:-50041694 Msa0296640:CDS
AAATGGTATTGATGTAAATT+TGG 0.260338 2_3:-50039133 Msa0296640:three_prime_UTR
GTATTACATTCTAAGGAAAA+TGG 0.266793 2_3:-50041254 Msa0296640:three_prime_UTR
TCCTTTGAGATGGGTGGGTT+AGG 0.269222 2_3:-50039261 Msa0296640:three_prime_UTR
AATTATATTTGCAGGTTGTC+TGG 0.274163 2_3:-50042850 Msa0296640:intron
CTCTTTCAAACAAAAGGCTT+TGG 0.275721 2_3:+50041190 None:intergenic
TGGTAATGTTGAATCCAAAA+TGG 0.275815 2_3:+50039712 None:intergenic
TCAGAAGAATTCAAGATTCT+TGG 0.275876 2_3:-50039609 Msa0296640:three_prime_UTR
ATGTGTATAACAACCTTATT+AGG 0.277373 2_3:+50041997 None:intergenic
CCTTTGAGATGGGTGGGTTA+GGG 0.279888 2_3:-50039260 Msa0296640:three_prime_UTR
TAAGAGATTACAGTTGATTC+AGG 0.287098 2_3:+50042792 None:intergenic
GAAGGTGAGGTCGCAGTTTA+GGG 0.291398 2_3:-50041824 Msa0296640:CDS
GTCCACAATGATCTTAGTTC+TGG 0.292501 2_3:+50040745 None:intergenic
AGAAGGTGAGGTCGCAGTTT+AGG 0.293050 2_3:-50041825 Msa0296640:CDS
TTTGAGGGATGCATGATATA+TGG 0.301206 2_3:-50039182 Msa0296640:three_prime_UTR
TATGTTTGTATTACATTCTA+AGG 0.302753 2_3:-50041261 Msa0296640:three_prime_UTR
CTTTATTGTATTATGGTAGA+AGG 0.307655 2_3:+50041096 None:intergenic
CCTAACCTTGCTTAGCATTT+GGG 0.308038 2_3:+50044517 None:intergenic
ACAAGTTTGTGATGTCAAAA+AGG 0.308600 2_3:-50041435 Msa0296640:three_prime_UTR
TTTGATTTCTCATTCAAAAT+TGG 0.312041 2_3:-50040189 Msa0296640:three_prime_UTR
CTCAATAACCCTAAACTAAT+AGG 0.316549 2_3:+50039336 None:intergenic
CAATTAAGATCTTAATCATT+TGG 0.318601 2_3:+50039487 None:intergenic
ATGTTAAGTTATGCTGTAAA+AGG 0.320979 2_3:+50044454 None:intergenic
ACATAAAATTAACTTCTATA+TGG 0.324180 2_3:+50044801 None:intergenic
CTGCAACATTAGAGCATGAT+AGG 0.327435 2_3:-50040686 Msa0296640:three_prime_UTR
TTCAACATTACCACTGGCTT+TGG 0.329154 2_3:-50039702 Msa0296640:three_prime_UTR
TGGTAATATATGCAAATATA+AGG 0.329451 2_3:+50044923 None:intergenic
CAATTGGTTCATCTAAAGTT+TGG 0.330150 2_3:+50042650 None:intergenic
ACAAACTTTAGAAGAGTTCA+TGG 0.335034 2_3:-50042593 Msa0296640:intron
GGTTGTTGAAAGGGATGTTT+TGG 0.337358 2_3:-50039301 Msa0296640:three_prime_UTR
ACCTAGTCCTTTGTTCCATA+AGG 0.339141 2_3:+50042265 None:intergenic
CTGTTATTAGGTAACCCTTA+TGG 0.345194 2_3:-50042280 Msa0296640:intron
TATGTAACTTAAGGTTTGTT+TGG 0.346365 2_3:+50044708 None:intergenic
ACTGAAACAACCAAGATTTC+GGG 0.348629 2_3:+50039371 None:intergenic
CCTTTGAAAACCAATCAAAA+TGG 0.349718 2_3:+50041884 None:intergenic
AGGCATGTTACTGTCCTTCC+AGG 0.350319 2_3:-50044231 Msa0296640:CDS
TTCTCCATTGCTTCTAAAAC+AGG 0.359856 2_3:+50041853 None:intergenic
AACTTCGCAGACTTCGTTAT+CGG 0.363743 2_3:-50040008 Msa0296640:three_prime_UTR
GGTCGTCTACCCAAAATTCT+TGG 0.364427 2_3:+50042813 None:intergenic
TAGTTCTTCTTCCACTCATT+AGG 0.370993 2_3:-50040591 Msa0296640:three_prime_UTR
GAGAAATCAAATTACTTTCA+AGG 0.372539 2_3:+50040201 None:intergenic
TATCTGAGGCTAAAACAAAA+TGG 0.373236 2_3:+50042073 None:intergenic
TAAGCAATACATATCATCAT+TGG 0.375137 2_3:-50041294 Msa0296640:three_prime_UTR
TTCTGGCATATGCTTGGATT+GGG 0.375631 2_3:-50040859 Msa0296640:three_prime_UTR
TATTACATATATGTAACTTA+AGG 0.376489 2_3:+50044699 None:intergenic
AAGGCGTGCTGCTGCGTTGT+TGG 0.378821 2_3:+50042146 None:intergenic
ATGATATGTATTGCTTATAT+TGG 0.379003 2_3:+50041300 None:intergenic
TAAATTGTCAGTGGTGAAAA+TGG 0.381839 2_3:+50039662 None:intergenic
TTGGGTCAGGCATGTCAAAA+TGG 0.384682 2_3:+50044535 None:intergenic
TTCAAGGTTAGGCCAACTAT+TGG 0.384714 2_3:+50039942 None:intergenic
ATGAACTCTTCTAAAGTTTG+TGG 0.385053 2_3:+50042595 None:intergenic
CCTAGTCCTTTGTTCCATAA+GGG 0.386334 2_3:+50042266 None:intergenic
GGCTAAAACAAAATGGTAAT+AGG 0.387821 2_3:+50042080 None:intergenic
AAATTCAATGAATGGTCCTT+TGG 0.391316 2_3:+50040318 None:intergenic
AAGAAGGAGGAGATGTTGTT+TGG 0.395383 2_3:+50044623 None:intergenic
TTTCTGGCATATGCTTGGAT+TGG 0.395599 2_3:-50040860 Msa0296640:three_prime_UTR
TGGGTTAGGGGAAGGGAGTG+AGG 0.398727 2_3:-50039247 Msa0296640:three_prime_UTR
GGGATTTCAACCCGAAATCT+TGG 0.398914 2_3:-50039381 Msa0296640:three_prime_UTR
TATGCTTGGATTGGGATATC+AGG 0.401194 2_3:-50040851 Msa0296640:three_prime_UTR
GTTATTGAGAGGCTTCTCTA+AGG 0.403019 2_3:-50039322 Msa0296640:three_prime_UTR
GTTTGGTGTGTGTCTATGCT+TGG 0.405185 2_3:+50044725 None:intergenic
TCAATCACAGCAGGTGATAA+AGG 0.405589 2_3:+50041922 None:intergenic
TGCAAATATAAGGTTGTTGA+AGG 0.408182 2_3:+50044933 None:intergenic
TTTAGTTCATCATTGCCAAT+TGG 0.409872 2_3:+50042634 None:intergenic
TAGGGGAAGGGAGTGAGGAC+TGG 0.410462 2_3:-50039242 Msa0296640:three_prime_UTR
TAACACAGACAACAATGATA+TGG 0.411132 2_3:-50040558 Msa0296640:three_prime_UTR
CCTGGATTGATAGCATTTCA+TGG 0.413843 2_3:-50040904 Msa0296640:three_prime_UTR
TATTGATGTAAATTTGGTAT+TGG 0.415020 2_3:-50039127 Msa0296640:three_prime_UTR
ACCAAGCTCTTTCAAACAAA+AGG 0.416110 2_3:+50041184 None:intergenic
GCCGGATTCAGTTTGTAAAC+TGG 0.416927 2_3:+50039419 None:intergenic
TCAAGACAATGAAGTTGTTT+CGG 0.419494 2_3:+50042192 None:intergenic
CAGAAGAATTCAAGATTCTT+GGG 0.420343 2_3:-50039608 Msa0296640:three_prime_UTR
TGGTTTCTTCATTCAAGGTT+AGG 0.422073 2_3:+50039931 None:intergenic
TTCCCTCTCCTTCAAAATCA+AGG 0.422259 2_3:-50044668 Msa0296640:five_prime_UTR
ACAGCTGTGGATGGCATTGA+TGG 0.427978 2_3:-50044093 Msa0296640:CDS
AACGAATGTGCTTGGGCCTA+CGG 0.428513 2_3:-50041358 Msa0296640:three_prime_UTR
TCTTATCTTGATAGAACATT+GGG 0.428742 2_3:+50038964 None:intergenic
CTTATTATCCCATGCAGGCT+TGG 0.429889 2_3:-50041957 Msa0296640:CDS
AGATGGGTGGGTTAGGGGAA+GGG 0.431709 2_3:-50039254 Msa0296640:three_prime_UTR
GAAGGTGGTTTCTTCATTCA+AGG 0.435414 2_3:+50039926 None:intergenic
TTTATCACCTGCTGTGATTG+AGG 0.440648 2_3:-50041920 Msa0296640:CDS
TTTATTGTATTATGGTAGAA+GGG 0.445975 2_3:+50041097 None:intergenic
AAGATTTCGGGTTGAAATCC+CGG 0.446170 2_3:+50039383 None:intergenic
GATCCTTTCTGGCATATGCT+TGG 0.446300 2_3:-50040865 Msa0296640:three_prime_UTR
CCTTGCTTAGCATTTGGGTC+AGG 0.448391 2_3:+50044522 None:intergenic
CATTGTTGTCTGTGTTATCA+TGG 0.448706 2_3:+50040564 None:intergenic
AGATAATGTGCTTGCTGCCT+CGG 0.449906 2_3:-50042055 Msa0296640:CDS
GGGTTGTGAGTGCAGAGAAA+TGG 0.450689 2_3:+50039874 None:intergenic
CAAACTTTAGATGAACCAAT+TGG 0.453888 2_3:-50042649 Msa0296640:CDS
GTTCATCACTGAATTATACT+TGG 0.454141 2_3:+50041726 None:intergenic
GCTTTGCCCTGCCATTGAAA+TGG 0.454180 2_3:+50040788 None:intergenic
GGTACTTGGAGTGAAAATTC+AGG 0.455300 2_3:+50044866 None:intergenic
TCAATCCCAACGAATGTGCT+TGG 0.455578 2_3:-50041366 Msa0296640:three_prime_UTR
AACTGATGAACTGATCTTCA+AGG 0.455683 2_3:+50040084 None:intergenic
AATTGGCAATGATGAACTAA+AGG 0.456766 2_3:-50042632 Msa0296640:CDS
TTAAATCAGACCTGAGTTTG+TGG 0.457853 2_3:-50040945 Msa0296640:three_prime_UTR
GTGTCATCCATTTCAATGGC+AGG 0.458742 2_3:-50040795 Msa0296640:three_prime_UTR
TACATCTACCCGAGGTAAAA+GGG 0.460578 2_3:-50041693 Msa0296640:CDS
GGGATATTGAGCAAAAGAAA+AGG 0.460788 2_3:+50039825 None:intergenic
GAATCCAAAATGGGCATTTG+AGG 0.461750 2_3:+50039722 None:intergenic
GGATGTGGATGTAGCTTTGA+GGG 0.462607 2_3:-50039217 Msa0296640:three_prime_UTR
AAGTTTGGTATATCACTTCT+GGG 0.462799 2_3:+50042665 None:intergenic
AACTCTTTAAGTCCCTTGCC+TGG 0.464805 2_3:+50044213 None:intergenic
GAGATGGGTGGGTTAGGGGA+AGG 0.465818 2_3:-50039255 Msa0296640:three_prime_UTR
GCATGGGATAATAAGTCTTC+CGG 0.467541 2_3:+50041965 None:intergenic
GGTAATGTTGAATCCAAAAT+GGG 0.468160 2_3:+50039713 None:intergenic
TGCATATATCTCCAAGTTTG+AGG 0.468657 2_3:-50044251 Msa0296640:CDS
CTTTGAGATGGGTGGGTTAG+GGG 0.469018 2_3:-50039259 Msa0296640:three_prime_UTR
CAATGTCAATGTGTTCAACT+TGG 0.469067 2_3:-50039566 Msa0296640:three_prime_UTR
GTAGTTGAGGACGTGGTACT+TGG 0.469071 2_3:+50044852 None:intergenic
GCATCTTCCTTTGAGATGGG+TGG 0.470249 2_3:-50039267 Msa0296640:three_prime_UTR
ATGACACACTCTCTCTATGT+AGG 0.472711 2_3:+50044827 None:intergenic
GCCAGTTTACAAACTGAATC+CGG 0.472712 2_3:-50039420 Msa0296640:three_prime_UTR
ACCTGAGTTTGTGGCAGCTA+GGG 0.474996 2_3:-50040936 Msa0296640:three_prime_UTR
GGAAGGGAGTGAGGACTGGA+TGG 0.475177 2_3:-50039238 Msa0296640:three_prime_UTR
CAATCCCAACGAATGTGCTT+GGG 0.478614 2_3:-50041365 Msa0296640:three_prime_UTR
GTCATTGTTATAAGCATCAC+AGG 0.484486 2_3:+50041603 None:intergenic
CATCTTCCTTTGAGATGGGT+GGG 0.484840 2_3:-50039266 Msa0296640:three_prime_UTR
ATTCAGTGATGAACCACATT+CGG 0.485585 2_3:-50041717 Msa0296640:CDS
ATCTTATCTTGATAGAACAT+TGG 0.485673 2_3:+50038963 None:intergenic
ATTATATTTGCAGGTTGTCT+GGG 0.486059 2_3:-50042849 Msa0296640:intron
GACATACCAATCAAAAGAAA+AGG 0.487141 2_3:+50039459 None:intergenic
ACAGTAACATGCCTCAAACT+TGG 0.488081 2_3:+50044240 None:intergenic
TTATGGGATTGGAGGTGAGA+GGG 0.488371 2_3:+50039805 None:intergenic
GCATGTCAAAATGGTGTTTG+AGG 0.490927 2_3:+50044544 None:intergenic
TAGGCCCAAGCACATTCGTT+GGG 0.491286 2_3:+50041361 None:intergenic
TGGATGTGGATGTAGCTTTG+AGG 0.491782 2_3:-50039218 Msa0296640:three_prime_UTR
TGAAGTTGCTGCCATGTGAC+TGG 0.493047 2_3:+50041138 None:intergenic
AAGCAATACATATCATCATT+GGG 0.493192 2_3:-50041293 Msa0296640:three_prime_UTR
CATTGATAATGAGTATGAAA+TGG 0.494629 2_3:-50039150 Msa0296640:three_prime_UTR
CTTCTCTAAGGTTGTTGAAA+GGG 0.495706 2_3:-50039310 Msa0296640:three_prime_UTR
ATTGGCAATGATGAACTAAA+GGG 0.496348 2_3:-50042631 Msa0296640:CDS
TAAGTTATGCTGTAAAAGGA+AGG 0.497152 2_3:+50044458 None:intergenic
GCAGTTTAGGGGAGGTTCAT+CGG 0.501375 2_3:-50041812 Msa0296640:CDS
ATCTCAACTTCGCCAATAGT+TGG 0.501904 2_3:-50039954 Msa0296640:three_prime_UTR
CATGGCGATATAGATACTCT+TGG 0.502065 2_3:+50042232 None:intergenic
CTTTAAGTCCCTTGCCTGGA+AGG 0.502979 2_3:+50044217 None:intergenic
AAGACCACCTTGTTAAGACT+TGG 0.504189 2_3:+50041559 None:intergenic
GACATGAATGGAAAAGTGAA+TGG 0.504634 2_3:-50041484 Msa0296640:three_prime_UTR
TTTGGATTCAACATTACCAC+TGG 0.509160 2_3:-50039708 Msa0296640:three_prime_UTR
TGGAATGTTCTTGTTGAAGA+AGG 0.509369 2_3:+50039894 None:intergenic
CAGAAACAAAATTCAATGAA+TGG 0.510015 2_3:+50040310 None:intergenic
CTGTGGGACATTGACATGAA+TGG 0.510723 2_3:-50041496 Msa0296640:three_prime_UTR
ACCTGCTGTGATTGAGGTCA+AGG 0.515480 2_3:-50041914 Msa0296640:CDS
TATGGCATCTTCCTTTGAGA+TGG 0.518876 2_3:-50039271 Msa0296640:three_prime_UTR
AAAATGGTATTTGTAATCGA+AGG 0.519154 2_3:-50040630 Msa0296640:three_prime_UTR
CAATGAGAACCAAGCCTGCA+TGG 0.521244 2_3:+50041948 None:intergenic
CCCGGTCATCGATGACTCGC+CGG 0.521804 2_3:+50039401 None:intergenic
GAGTGAGGACTGGATGGATG+TGG 0.521865 2_3:-50039232 Msa0296640:three_prime_UTR
TGCGAAGTTCATCAAGGGAT+TGG 0.522471 2_3:+50040022 None:intergenic
CCCAAATGCTAAGCAAGGTT+AGG 0.522482 2_3:-50044517 Msa0296640:five_prime_UTR
GGATTGGTGTCGAATGTGAC+AGG 0.523214 2_3:+50040038 None:intergenic
TAGGAATTGTCAACAAGGGC+AGG 0.527659 2_3:+50042099 None:intergenic
TCCGGCGAGTCATCGATGAC+CGG 0.527988 2_3:-50039402 Msa0296640:three_prime_UTR
AAAGAGACATTGGACTAAGA+AGG 0.531116 2_3:+50044607 None:intergenic
CCATGAAATGCTATCAATCC+AGG 0.531538 2_3:+50040904 None:intergenic
ATTAGAGCATGATAGGGAAA+AGG 0.532555 2_3:-50040679 Msa0296640:three_prime_UTR
TTGATTTGGAGGCTTGGAGG+AGG 0.533922 2_3:-50041324 Msa0296640:three_prime_UTR
ATATCATCATTGGGTTGCGC+AGG 0.533975 2_3:-50041284 Msa0296640:three_prime_UTR
CAACTTCAATTGTTGCGCCA+AGG 0.534098 2_3:-50041123 Msa0296640:three_prime_UTR
AATCTTGAATTCTTCTGATG+TGG 0.534326 2_3:+50039614 None:intergenic
TCCCTAGCTGCCACAAACTC+AGG 0.537117 2_3:+50040935 None:intergenic
ACTGACAATTTAGAACTCTC+TGG 0.544169 2_3:-50039651 Msa0296640:three_prime_UTR
CCGGCGAGTCATCGATGACC+GGG 0.544538 2_3:-50039401 Msa0296640:three_prime_UTR
GCTGGTGTCATCCATTTCAA+TGG 0.546735 2_3:-50040799 Msa0296640:three_prime_UTR
GACCTGAGTTTGTGGCAGCT+AGG 0.547386 2_3:-50040937 Msa0296640:three_prime_UTR
GTATGCTGCTTGATGCTACA+TGG 0.547890 2_3:+50042214 None:intergenic
AGAAGAGCATCCTATAAGAA+AGG 0.548016 2_3:+50044163 None:intergenic
GTAGGCCCAAGCACATTCGT+TGG 0.549124 2_3:+50041360 None:intergenic
GTATATGTCACAATGAATGT+AGG 0.549602 2_3:+50040122 None:intergenic
TGTTAAAGAGAAAGAGACAT+TGG 0.549633 2_3:+50044597 None:intergenic
TTATGGTAGAAGGGGAGCCT+TGG 0.549766 2_3:+50041106 None:intergenic
ACTGTATGATCAACAAATAG+AGG 0.551473 2_3:+50044411 None:intergenic
GTTGTCTGTGTTATCATGGA+AGG 0.551816 2_3:+50040568 None:intergenic
ATGGCATCTTCCTTTGAGAT+GGG 0.551979 2_3:-50039270 Msa0296640:three_prime_UTR
AACTGATCTTACACCTCTGT+GGG 0.552088 2_3:-50041512 Msa0296640:three_prime_UTR
CAGCTAGGGACATTACCTCC+TGG 0.553175 2_3:-50040922 Msa0296640:three_prime_UTR
TTCATCACTGAATTATACTT+GGG 0.554268 2_3:+50041727 None:intergenic
GCTTCTCTAAGGTTGTTGAA+AGG 0.554793 2_3:-50039311 Msa0296640:three_prime_UTR
GCCTGTGAGGTCCAGTCACA+TGG 0.555908 2_3:-50041149 Msa0296640:three_prime_UTR
AGCAATGGAGAAAGATCAGA+AGG 0.555930 2_3:-50041842 Msa0296640:CDS
TGTTATTGCAGCAAAACTAC+AGG 0.556038 2_3:-50041758 Msa0296640:CDS
TGTGCATGTATGCATGATGA+TGG 0.556364 2_3:-50039102 Msa0296640:three_prime_UTR
GCCTTGACCTCAATCACAGC+AGG 0.559932 2_3:+50041913 None:intergenic
GTAGCTTTGAGGGGAACAGT+AGG 0.560271 2_3:-50039207 Msa0296640:three_prime_UTR
AGACATACACAATATAAGAC+AGG 0.561353 2_3:+50044302 None:intergenic
CAAAACAAGTGCTCCACCAT+AGG 0.561807 2_3:-50044069 Msa0296640:intron
AAATGGTATTTGTAATCGAA+GGG 0.565166 2_3:-50040629 Msa0296640:three_prime_UTR
CCCTAACCCACCCATCTCAA+AGG 0.566184 2_3:+50039260 None:intergenic
AATCCAAGCATATGCCAGAA+AGG 0.569673 2_3:+50040862 None:intergenic
TTTATGGGATTGGAGGTGAG+AGG 0.570935 2_3:+50039804 None:intergenic
GCCATGTGACTGGACCTCAC+AGG 0.572428 2_3:+50041148 None:intergenic
TGTTACTGTCCTTCCAGGCA+AGG 0.573172 2_3:-50044226 Msa0296640:CDS
TAGCTTTGAGGGGAACAGTA+GGG 0.574005 2_3:-50039206 Msa0296640:three_prime_UTR
AACTCGTAGTTGAGAAGTCA+TGG 0.574106 2_3:+50040656 None:intergenic
TTGTGAAACCTTGAGGACGC+AGG 0.579627 2_3:+50040375 None:intergenic
GAAGACTTATTATCCCATGC+AGG 0.581237 2_3:-50041962 Msa0296640:CDS
CTCTATGTAGGGTGTAGTTG+AGG 0.581880 2_3:+50044839 None:intergenic
TGTGAAATGAAATAAAGAAG+AGG 0.586272 2_3:-50044377 Msa0296640:five_prime_UTR
GTTACTGTCCTTCCAGGCAA+GGG 0.586458 2_3:-50044225 Msa0296640:CDS
CGGGTAGATGTATCCGAATG+TGG 0.586568 2_3:+50041704 None:intergenic
GAAGTCTGCGAAGTTCATCA+AGG 0.586654 2_3:+50040016 None:intergenic
TATATGTCACAATGAATGTA+GGG 0.586670 2_3:+50040123 None:intergenic
TGACACACTCTCTCTATGTA+GGG 0.587504 2_3:+50044828 None:intergenic
TGCAACATTAGAGCATGATA+GGG 0.593846 2_3:-50040685 Msa0296640:three_prime_UTR
GTTGACGATGTTGAGAATGC+TGG 0.595078 2_3:-50040817 Msa0296640:three_prime_UTR
TGTTCTTGTTGAAGAAGGTG+AGG 0.596063 2_3:+50039899 None:intergenic
TTATTGTATTATGGTAGAAG+GGG 0.597161 2_3:+50041098 None:intergenic
GCAAATATAAGGTTGTTGAA+GGG 0.598006 2_3:+50044934 None:intergenic
AATGAGAACCAAGCCTGCAT+GGG 0.602294 2_3:+50041949 None:intergenic
ATTAGTTTAGGGTTATTGAG+AGG 0.602575 2_3:-50039333 Msa0296640:three_prime_UTR
TATGGAACAAAGGACTAGGT+TGG 0.602971 2_3:-50042262 Msa0296640:CDS
AAGAGGAAGAGTACCTATGG+TGG 0.605080 2_3:+50044056 None:intergenic
AGAAGGTGAGGAAATGAAGG+TGG 0.605802 2_3:+50039911 None:intergenic
CCCTTATGGAACAAAGGACT+AGG 0.608232 2_3:-50042266 Msa0296640:CDS
TGTCATCCATTTCAATGGCA+GGG 0.612684 2_3:-50040794 Msa0296640:three_prime_UTR
ACAACAATGATATGGCATCA+TGG 0.616836 2_3:-50040550 Msa0296640:three_prime_UTR
TGAAGAAGGTGAGGAAATGA+AGG 0.617329 2_3:+50039908 None:intergenic
AAGCTAATTGTGAAACCTTG+AGG 0.617818 2_3:+50040368 None:intergenic
ATGTATGCATGATGATGGAT+TGG 0.618691 2_3:-50039097 Msa0296640:three_prime_UTR
AGGTAACCCTTATGGAACAA+AGG 0.619724 2_3:-50042272 Msa0296640:CDS
TTCCAGAACTAAGATCATTG+TGG 0.622845 2_3:-50040747 Msa0296640:three_prime_UTR
TCAATGGCAGGGCAAAGCCA+TGG 0.623067 2_3:-50040783 Msa0296640:three_prime_UTR
TGAAATAAAAGAGAGACCAA+AGG 0.623407 2_3:-50040334 Msa0296640:three_prime_UTR
GTTCCGCAGACGGTAGCTGA+AGG 0.623605 2_3:+50042127 None:intergenic
AAGTCTGCGAAGTTCATCAA+GGG 0.623822 2_3:+50040017 None:intergenic
GTTGTTTCCAAGTCTTAACA+AGG 0.625853 2_3:-50041566 Msa0296640:three_prime_UTR
AAACTGATCTTACACCTCTG+TGG 0.626571 2_3:-50041513 Msa0296640:three_prime_UTR
CCTGACCCAAATGCTAAGCA+AGG 0.628392 2_3:-50044522 Msa0296640:five_prime_UTR
ACGCCTTCAGCTACCGTCTG+CGG 0.629379 2_3:-50042130 Msa0296640:CDS
GCAATGATGAACTAAAGGGA+AGG 0.629505 2_3:-50042627 Msa0296640:CDS
GCAGGAACTAGTTCCGCAGA+CGG 0.630003 2_3:+50042117 None:intergenic
GTGAGGTCGCAGTTTAGGGG+AGG 0.635528 2_3:-50041820 Msa0296640:CDS
GGAGCAGTGGAAACATGCAA+TGG 0.639468 2_3:-50041463 Msa0296640:three_prime_UTR
GGCAGCAAGCACATTATCTG+AGG 0.641548 2_3:+50042059 None:intergenic
GTTTCCAAGTCTTAACAAGG+TGG 0.642127 2_3:-50041563 Msa0296640:three_prime_UTR
GAGACATTGGACTAAGAAGG+AGG 0.643791 2_3:+50044610 None:intergenic
GGAAAAGCTATGTCTAGCCA+TGG 0.645591 2_3:+50040766 None:intergenic
ATCATGGAAGGCCTAATGAG+TGG 0.647033 2_3:+50040580 None:intergenic
TGGAAAAGTGAATGGAGCAG+TGG 0.647140 2_3:-50041476 Msa0296640:three_prime_UTR
GGTAATAGGAATTGTCAACA+AGG 0.647228 2_3:+50042094 None:intergenic
GTAGGGTGTAGTTGAGGACG+TGG 0.650259 2_3:+50044845 None:intergenic
TGGAGAAAGATCAGAAGGTG+AGG 0.652916 2_3:-50041837 Msa0296640:CDS
TTATACACATAATTACAGAC+CGG 0.653156 2_3:-50041984 Msa0296640:CDS
CAGAGAACAACTTCATACAA+TGG 0.654122 2_3:-50040165 Msa0296640:three_prime_UTR
GTAATAGGAATTGTCAACAA+GGG 0.660966 2_3:+50042095 None:intergenic
AGAGAGTTCTAAATTGTCAG+TGG 0.670269 2_3:+50039653 None:intergenic
AAGGTGAGGTCGCAGTTTAG+GGG 0.680449 2_3:-50041823 Msa0296640:CDS
GCCAGAAAGGATCTATAACG+TGG 0.683226 2_3:+50040875 None:intergenic
CAACTGGTTCAACTAATGTG+AGG 0.686416 2_3:+50038915 None:intergenic
GTATCACAATGTCATCGTCG+AGG 0.702865 2_3:+50041536 None:intergenic
GATGTGGATGTAGCTTTGAG+GGG 0.707666 2_3:-50039216 Msa0296640:three_prime_UTR
GAGTGATGTTGCAACAACCG+AGG 0.712252 2_3:+50042038 None:intergenic
TTGTGCGACTCGAGCCTGTG+AGG 0.715010 2_3:-50041162 Msa0296640:three_prime_UTR
TGAAATGCTATCAATCCAGG+AGG 0.724414 2_3:+50040907 None:intergenic
CATTCGGATACATCTACCCG+AGG 0.731272 2_3:-50041701 Msa0296640:CDS
TTCATGTCAATGTCCCACAG+AGG 0.769997 2_3:+50041499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTTTTATTT+TGG + chr2_3:50038961-50038980 None:intergenic 0.0%
!! ATATAATATAAAAAACCAAA+TGG + chr2_3:50039528-50039547 None:intergenic 10.0%
!!! TAATGAAATTTTTTATTCTA+TGG + chr2_3:50040593-50040612 None:intergenic 10.0%
!! ATTTCATTATAAAATAGATA+AGG - chr2_3:50040604-50040623 Msa0296640:three_prime_UTR 10.0%
!! ACATAAAATTAACTTCTATA+TGG + chr2_3:50039055-50039074 None:intergenic 15.0%
!! TATTACATATATGTAACTTA+AGG + chr2_3:50039157-50039176 None:intergenic 15.0%
!!! TTTTGATATATGTTATTTCA+AGG + chr2_3:50039375-50039394 None:intergenic 15.0%
!! AATGATTCATATTATAAACT+CGG - chr2_3:50039921-50039940 Msa0296640:three_prime_UTR 15.0%
!! ACTGTTAAAATAACTTATAA+TGG + chr2_3:50040797-50040816 None:intergenic 15.0%
!!! AACTTGTCTATATTTTTATA+TGG - chr2_3:50040821-50040840 Msa0296640:three_prime_UTR 15.0%
!!! AATTTAGATCTATTTTCATA+TGG - chr2_3:50040895-50040914 Msa0296640:three_prime_UTR 15.0%
!!! ATTTTACTTTGATTTTCTAT+TGG - chr2_3:50041134-50041153 Msa0296640:three_prime_UTR 15.0%
!!! TGAAATTTTTAGATATTAGA+GGG + chr2_3:50042470-50042489 None:intergenic 15.0%
!!! TTGAAATTTTTAGATATTAG+AGG + chr2_3:50042471-50042490 None:intergenic 15.0%
!! TGGTAATATATGCAAATATA+AGG + chr2_3:50038933-50038952 None:intergenic 20.0%
!!! TTTTTTTTATTTTGGTCTCT+TGG + chr2_3:50038953-50038972 None:intergenic 20.0%
!!! ATTAATTACCTTGATTTTGA+AGG + chr2_3:50039196-50039215 None:intergenic 20.0%
!!! TATATTGTGTATGTCTATTT+TGG - chr2_3:50039558-50039577 Msa0296640:three_prime_UTR 20.0%
!! TAATATTCATTCAACTATTC+TGG + chr2_3:50040031-50040050 None:intergenic 20.0%
!! AGAATAGTTGAATGAATATT+AGG - chr2_3:50040030-50040049 Msa0296640:three_prime_UTR 20.0%
!!! CATTTTTATTGATTTGTTAG+AGG + chr2_3:50040327-50040346 None:intergenic 20.0%
!! CAAATCAATAAAAATGTTAC+CGG - chr2_3:50040331-50040350 Msa0296640:three_prime_UTR 20.0%
!!! AAGATTTTAAAATCAAAAGC+CGG + chr2_3:50040353-50040372 None:intergenic 20.0%
!! AAGATAATTCATTATATGCA+AGG + chr2_3:50040653-50040672 None:intergenic 20.0%
!! TATCACTCATATTGTTATAT+CGG - chr2_3:50040952-50040971 Msa0296640:three_prime_UTR 20.0%
!! TAACTTCTAATTATATTTGC+AGG - chr2_3:50040995-50041014 Msa0296640:three_prime_UTR 20.0%
!! CACTAGAATTATTTCAAATT+TGG + chr2_3:50041505-50041524 None:intergenic 20.0%
!! ATGATAAATGAACTGTTATT+AGG - chr2_3:50041561-50041580 Msa0296640:three_prime_UTR 20.0%
!! ATGATATGTATTGCTTATAT+TGG + chr2_3:50042556-50042575 None:intergenic 20.0%
!! TATGTTTGTATTACATTCTA+AGG - chr2_3:50042592-50042611 Msa0296640:intron 20.0%
!! TTTATTGTATTATGGTAGAA+GGG + chr2_3:50042759-50042778 None:intergenic 20.0%
!! CATTTGTCTTTATTGTATTA+TGG + chr2_3:50042767-50042786 None:intergenic 20.0%
!!! GTAAAATTTTAAAGCAAGAA+AGG + chr2_3:50043330-50043349 None:intergenic 20.0%
!!! TTTGATTTCTCATTCAAAAT+TGG - chr2_3:50043664-50043683 Msa0296640:intron 20.0%
!!! GATTGTTTTGTATAATTTGA+TGG + chr2_3:50043882-50043901 None:intergenic 20.0%
!! CAATTAAGATCTTAATCATT+TGG + chr2_3:50044369-50044388 None:intergenic 20.0%
!! CAAATGATTAAGATCTTAAT+TGG - chr2_3:50044367-50044386 Msa0296640:five_prime_UTR 20.0%
!!! AAATGGTATTGATGTAAATT+TGG - chr2_3:50044720-50044739 Msa0296640:five_prime_UTR 20.0%
!! TATTGATGTAAATTTGGTAT+TGG - chr2_3:50044726-50044745 Msa0296640:five_prime_UTR 20.0%
!!! GCTTTTTAGCATATAGTTTT+TGG + chr2_3:50039091-50039110 None:intergenic 25.0%
!! TATGTAACTTAAGGTTTGTT+TGG + chr2_3:50039148-50039167 None:intergenic 25.0%
! ATGTTAAGTTATGCTGTAAA+AGG + chr2_3:50039402-50039421 None:intergenic 25.0%
! TGTGAAATGAAATAAAGAAG+AGG - chr2_3:50039476-50039495 Msa0296640:three_prime_UTR 25.0%
!!! AAGCATGTTATTTTTTGCAA+AGG - chr2_3:50040256-50040275 Msa0296640:three_prime_UTR 25.0%
!!! TTTATTGATTTGTTAGAGGT+TGG + chr2_3:50040323-50040342 None:intergenic 25.0%
! ACAATTAGAATAGTTACTGT+TGG - chr2_3:50040556-50040575 Msa0296640:three_prime_UTR 25.0%
! TTAAGTCTTAGCTTCATTAT+AGG + chr2_3:50040877-50040896 None:intergenic 25.0%
!!! TTACTTTGATTTTCTATTGG+TGG - chr2_3:50041137-50041156 Msa0296640:three_prime_UTR 25.0%
!!! AAATGACATGACTTTTTCAT+AGG - chr2_3:50041164-50041183 Msa0296640:three_prime_UTR 25.0%
!! AAGTTTAACTGCAAATGTTT+TGG + chr2_3:50041313-50041332 None:intergenic 25.0%
! ACTGTAAAATTTCAATCCAA+CGG + chr2_3:50041417-50041436 None:intergenic 25.0%
!! ATATAGATACTCTTGGATTT+TGG + chr2_3:50041617-50041636 None:intergenic 25.0%
! ATGTGTATAACAACCTTATT+AGG + chr2_3:50041859-50041878 None:intergenic 25.0%
! TTATACACATAATTACAGAC+CGG - chr2_3:50041869-50041888 Msa0296640:CDS 25.0%
!!! CATTTTGATTGGTTTTCAAA+GGG - chr2_3:50041970-50041989 Msa0296640:CDS 25.0%
!!! ATTTTGATTGGTTTTCAAAG+GGG - chr2_3:50041971-50041990 Msa0296640:CDS 25.0%
! TTCATCACTGAATTATACTT+GGG + chr2_3:50042129-50042148 None:intergenic 25.0%
! TAAGCAATACATATCATCAT+TGG - chr2_3:50042559-50042578 Msa0296640:intron 25.0%
! AAGCAATACATATCATCATT+GGG - chr2_3:50042560-50042579 Msa0296640:intron 25.0%
!! GTATTACATTCTAAGGAAAA+TGG - chr2_3:50042599-50042618 Msa0296640:CDS 25.0%
! TTATTGTATTATGGTAGAAG+GGG + chr2_3:50042758-50042777 None:intergenic 25.0%
! CTTTATTGTATTATGGTAGA+AGG + chr2_3:50042760-50042779 None:intergenic 25.0%
! AAAATGGTATTTGTAATCGA+AGG - chr2_3:50043223-50043242 Msa0296640:intron 25.0%
! AAATGGTATTTGTAATCGAA+GGG - chr2_3:50043224-50043243 Msa0296640:intron 25.0%
! CAGAAACAAAATTCAATGAA+TGG + chr2_3:50043546-50043565 None:intergenic 25.0%
!! TGTTTTATCTTGCAATTACA+TGG - chr2_3:50043564-50043583 Msa0296640:intron 25.0%
! GAGAAATCAAATTACTTTCA+AGG + chr2_3:50043655-50043674 None:intergenic 25.0%
! TATATGTCACAATGAATGTA+GGG + chr2_3:50043733-50043752 None:intergenic 25.0%
!! GAAGTGGTTTATTCTTTTAT+GGG + chr2_3:50044067-50044086 None:intergenic 25.0%
!! TGAAGTGGTTTATTCTTTTA+TGG + chr2_3:50044068-50044087 None:intergenic 25.0%
!!! TTGATTTTGCCTATTAGTTT+AGG - chr2_3:50044508-50044527 Msa0296640:five_prime_UTR 25.0%
!!! TGATTTTGCCTATTAGTTTA+GGG - chr2_3:50044509-50044528 Msa0296640:five_prime_UTR 25.0%
!!! CATTGATAATGAGTATGAAA+TGG - chr2_3:50044703-50044722 Msa0296640:five_prime_UTR 25.0%
! TCTTATCTTGATAGAACATT+GGG + chr2_3:50044892-50044911 None:intergenic 25.0%
! ATCTTATCTTGATAGAACAT+TGG + chr2_3:50044893-50044912 None:intergenic 25.0%
!!! AGCATATAGTTTTTGGAGTT+TGG + chr2_3:50039084-50039103 None:intergenic 30.0%
TGTTAAAGAGAAAGAGACAT+TGG + chr2_3:50039259-50039278 None:intergenic 30.0%
TAAGTTATGCTGTAAAAGGA+AGG + chr2_3:50039398-50039417 None:intergenic 30.0%
ACTGTATGATCAACAAATAG+AGG + chr2_3:50039445-50039464 None:intergenic 30.0%
!! AACCTGTTTGTTTTTCCATT+TGG - chr2_3:50039510-50039529 Msa0296640:three_prime_UTR 30.0%
AACCAAATGGAAAAACAAAC+AGG + chr2_3:50039515-50039534 None:intergenic 30.0%
AGACATACACAATATAAGAC+AGG + chr2_3:50039554-50039573 None:intergenic 30.0%
!! TGTGTATGTCTATTTTGGAT+TGG - chr2_3:50039563-50039582 Msa0296640:three_prime_UTR 30.0%
AAGCTTGATATTGTGACTAA+AGG + chr2_3:50039872-50039891 None:intergenic 30.0%
TACGCATAATATGAATCCTT+CGG - chr2_3:50039962-50039981 Msa0296640:three_prime_UTR 30.0%
ATCATTCGATCTTCAATCAA+TGG - chr2_3:50040106-50040125 Msa0296640:three_prime_UTR 30.0%
TGTAGGAAATAGATTCCTTA+GGG + chr2_3:50040171-50040190 None:intergenic 30.0%
ATGTAGGAAATAGATTCCTT+AGG + chr2_3:50040172-50040191 None:intergenic 30.0%
TCTGTTATTACAGATTCACT+TGG + chr2_3:50040458-50040477 None:intergenic 30.0%
!! ATTTAACTTGCCTCAAATTC+TGG - chr2_3:50040711-50040730 Msa0296640:three_prime_UTR 30.0%
AACATAAAGTCCAGAATTTG+AGG + chr2_3:50040724-50040743 None:intergenic 30.0%
AATTATATTTGCAGGTTGTC+TGG - chr2_3:50041003-50041022 Msa0296640:three_prime_UTR 30.0%
ATTATATTTGCAGGTTGTCT+GGG - chr2_3:50041004-50041023 Msa0296640:three_prime_UTR 30.0%
GTTGTCTGGGAAAAAAATTA+GGG - chr2_3:50041017-50041036 Msa0296640:three_prime_UTR 30.0%
! AAAATTAGGGCCAAGAATTT+TGG - chr2_3:50041030-50041049 Msa0296640:three_prime_UTR 30.0%
! AAATTAGGGCCAAGAATTTT+GGG - chr2_3:50041031-50041050 Msa0296640:three_prime_UTR 30.0%
! TAAGAGATTACAGTTGATTC+AGG + chr2_3:50041064-50041083 None:intergenic 30.0%
AAGTTTGGTATATCACTTCT+GGG + chr2_3:50041191-50041210 None:intergenic 30.0%
AAAGTTTGGTATATCACTTC+TGG + chr2_3:50041192-50041211 None:intergenic 30.0%
! CAATTGGTTCATCTAAAGTT+TGG + chr2_3:50041206-50041225 None:intergenic 30.0%
CAAACTTTAGATGAACCAAT+TGG - chr2_3:50041204-50041223 Msa0296640:three_prime_UTR 30.0%
! TTTAGTTCATCATTGCCAAT+TGG + chr2_3:50041222-50041241 None:intergenic 30.0%
AATTGGCAATGATGAACTAA+AGG - chr2_3:50041221-50041240 Msa0296640:three_prime_UTR 30.0%
ATTGGCAATGATGAACTAAA+GGG - chr2_3:50041222-50041241 Msa0296640:three_prime_UTR 30.0%
!! ATGAACTCTTCTAAAGTTTG+TGG + chr2_3:50041261-50041280 None:intergenic 30.0%
! ACAAACTTTAGAAGAGTTCA+TGG - chr2_3:50041260-50041279 Msa0296640:three_prime_UTR 30.0%
AGAGTTCATGGTTAAAATGA+AGG - chr2_3:50041272-50041291 Msa0296640:three_prime_UTR 30.0%
TTCATGGTTAAAATGAAGGA+AGG - chr2_3:50041276-50041295 Msa0296640:three_prime_UTR 30.0%
TGCAGTTAAACTTAGAGAAA+TGG - chr2_3:50041320-50041339 Msa0296640:three_prime_UTR 30.0%
! TTTTACAGTTCTCAATCCAA+CGG - chr2_3:50041428-50041447 Msa0296640:three_prime_UTR 30.0%
! TTTGAGACTTCAACTTGAAA+AGG + chr2_3:50041539-50041558 None:intergenic 30.0%
TCAAGACAATGAAGTTGTTT+CGG + chr2_3:50041664-50041683 None:intergenic 30.0%
GTAATAGGAATTGTCAACAA+GGG + chr2_3:50041761-50041780 None:intergenic 30.0%
GGCTAAAACAAAATGGTAAT+AGG + chr2_3:50041776-50041795 None:intergenic 30.0%
! TATCTGAGGCTAAAACAAAA+TGG + chr2_3:50041783-50041802 None:intergenic 30.0%
TAACTGTTTACGACCTAATA+AGG - chr2_3:50041843-50041862 Msa0296640:CDS 30.0%
! CCTTTGAAAACCAATCAAAA+TGG + chr2_3:50041972-50041991 None:intergenic 30.0%
!!! CCATTTTGATTGGTTTTCAA+AGG - chr2_3:50041969-50041988 Msa0296640:CDS 30.0%
! AGTTTTGCTGCAATAACATT+TGG + chr2_3:50042093-50042112 None:intergenic 30.0%
GTTCATCACTGAATTATACT+TGG + chr2_3:50042130-50042149 None:intergenic 30.0%
CAGGCACAAAAACATTTATT+TGG + chr2_3:50042234-50042253 None:intergenic 30.0%
ACAAGTTTGTGATGTCAAAA+AGG - chr2_3:50042418-50042437 Msa0296640:intron 30.0%
!!! CATGAACATTTTTGATTTGG+AGG - chr2_3:50042518-50042537 Msa0296640:intron 30.0%
TCAACTACGAGTTACAAAAA+TGG - chr2_3:50043207-50043226 Msa0296640:intron 30.0%
TAACACAGACAACAATGATA+TGG - chr2_3:50043295-50043314 Msa0296640:intron 30.0%
TGAAATAAAAGAGAGACCAA+AGG - chr2_3:50043519-50043538 Msa0296640:intron 30.0%
AAATTCAATGAATGGTCCTT+TGG + chr2_3:50043538-50043557 None:intergenic 30.0%
GTATATGTCACAATGAATGT+AGG + chr2_3:50043734-50043753 None:intergenic 30.0%
!!! TTTTTAAGTGTGTGAGAGAT+GGG + chr2_3:50044003-50044022 None:intergenic 30.0%
!!! ATTTTTAAGTGTGTGAGAGA+TGG + chr2_3:50044004-50044023 None:intergenic 30.0%
! TTATTCTTTTATGGGATTGG+AGG + chr2_3:50044059-50044078 None:intergenic 30.0%
! GGTTTATTCTTTTATGGGAT+TGG + chr2_3:50044062-50044081 None:intergenic 30.0%
!! TTTTGTGAGTTCTTTTGAAG+TGG + chr2_3:50044083-50044102 None:intergenic 30.0%
! AAAAACTTTGGTGATCTAAG+TGG + chr2_3:50044106-50044125 None:intergenic 30.0%
TTTGAGGAAGAGAAAAACTT+TGG + chr2_3:50044118-50044137 None:intergenic 30.0%
GGTAATGTTGAATCCAAAAT+GGG + chr2_3:50044143-50044162 None:intergenic 30.0%
! TGGTAATGTTGAATCCAAAA+TGG + chr2_3:50044144-50044163 None:intergenic 30.0%
TAAATTGTCAGTGGTGAAAA+TGG + chr2_3:50044194-50044213 None:intergenic 30.0%
AATCTTGAATTCTTCTGATG+TGG + chr2_3:50044242-50044261 None:intergenic 30.0%
TCAGAAGAATTCAAGATTCT+TGG - chr2_3:50044244-50044263 Msa0296640:CDS 30.0%
CAGAAGAATTCAAGATTCTT+GGG - chr2_3:50044245-50044264 Msa0296640:CDS 30.0%
!!! ATTGCAGCTTTTTTTAAGCT+AGG - chr2_3:50044337-50044356 Msa0296640:five_prime_UTR 30.0%
!!! GCTTTTTTTAAGCTAGGATT+AGG - chr2_3:50044343-50044362 Msa0296640:five_prime_UTR 30.0%
GACATACCAATCAAAAGAAA+AGG + chr2_3:50044397-50044416 None:intergenic 30.0%
!! AACTGGCTCTTGATATTTTT+GGG + chr2_3:50044420-50044439 None:intergenic 30.0%
!! AAACTGGCTCTTGATATTTT+TGG + chr2_3:50044421-50044440 None:intergenic 30.0%
AACTGAAACAACCAAGATTT+CGG + chr2_3:50044486-50044505 None:intergenic 30.0%
CTCAATAACCCTAAACTAAT+AGG + chr2_3:50044520-50044539 None:intergenic 30.0%
! ATTAGTTTAGGGTTATTGAG+AGG - chr2_3:50044520-50044539 Msa0296640:five_prime_UTR 30.0%
!!! TGATGATGGATTGGAAATTT+TGG - chr2_3:50044765-50044784 Msa0296640:five_prime_UTR 30.0%
! TAGAATGATGATGCCATTTA+AGG - chr2_3:50044814-50044833 Msa0296640:five_prime_UTR 30.0%
! CCTCTGTTTAAAACCTTAAA+TGG + chr2_3:50044830-50044849 None:intergenic 30.0%
!!! CCATTTAAGGTTTTAAACAG+AGG - chr2_3:50044827-50044846 Msa0296640:five_prime_UTR 30.0%
TGCTAAAAAGCTTCATGTTG+AGG - chr2_3:50039100-50039119 Msa0296640:three_prime_UTR 35.0%
!! TACCTTGATTTTGAAGGAGA+GGG + chr2_3:50039190-50039209 None:intergenic 35.0%
!! TTACCTTGATTTTGAAGGAG+AGG + chr2_3:50039191-50039210 None:intergenic 35.0%
AAAGAGACATTGGACTAAGA+AGG + chr2_3:50039249-50039268 None:intergenic 35.0%
TGCATATATCTCCAAGTTTG+AGG - chr2_3:50039602-50039621 Msa0296640:three_prime_UTR 35.0%
!! AGAAGAGCATCCTATAAGAA+AGG + chr2_3:50039693-50039712 None:intergenic 35.0%
!! TGTTCTTCACTTTTCTTCTG+AGG - chr2_3:50039722-50039741 Msa0296640:three_prime_UTR 35.0%
!!! TGTGTTTGTTTTAACAGCTG+TGG - chr2_3:50039747-50039766 Msa0296640:three_prime_UTR 35.0%
!!! TTTGTTTTAACAGCTGTGGA+TGG - chr2_3:50039751-50039770 Msa0296640:three_prime_UTR 35.0%
TCGCATATATACACATAGTC+AGG - chr2_3:50039843-50039862 Msa0296640:three_prime_UTR 35.0%
ATGATTCATAATGTGACCGA+AGG + chr2_3:50039981-50040000 None:intergenic 35.0%
TGATTACGCAGTTAGAAAGA+AGG - chr2_3:50040005-50040024 Msa0296640:three_prime_UTR 35.0%
!! TGTATCACATTTTAGCCCTA+AGG - chr2_3:50040153-50040172 Msa0296640:three_prime_UTR 35.0%
GGTTGTCTGGGAAAAAAATT+AGG - chr2_3:50041016-50041035 Msa0296640:three_prime_UTR 35.0%
ATGGTTAAAATGAAGGAAGG+TGG - chr2_3:50041279-50041298 Msa0296640:three_prime_UTR 35.0%
ACCACTAGAATTCGTGTTAT+TGG - chr2_3:50041465-50041484 Msa0296640:three_prime_UTR 35.0%
ACCAATAACACGAATTCTAG+TGG + chr2_3:50041469-50041488 None:intergenic 35.0%
TTTCAAATTTGGATTCCGTG+CGG + chr2_3:50041494-50041513 None:intergenic 35.0%
CTGTTATTAGGTAACCCTTA+TGG - chr2_3:50041573-50041592 Msa0296640:three_prime_UTR 35.0%
GGTAATAGGAATTGTCAACA+AGG + chr2_3:50041762-50041781 None:intergenic 35.0%
!! TTCTCCATTGCTTCTAAAAC+AGG + chr2_3:50042003-50042022 None:intergenic 35.0%
TGTTATTGCAGCAAAACTAC+AGG - chr2_3:50042095-50042114 Msa0296640:CDS 35.0%
ATTCAGTGATGAACCACATT+CGG - chr2_3:50042136-50042155 Msa0296640:CDS 35.0%
GTCATTGTTATAAGCATCAC+AGG + chr2_3:50042253-50042272 None:intergenic 35.0%
! GTTGTTTCCAAGTCTTAACA+AGG - chr2_3:50042287-50042306 Msa0296640:intron 35.0%
GACATGAATGGAAAAGTGAA+TGG - chr2_3:50042369-50042388 Msa0296640:intron 35.0%
ATCAAAAATGTTCATGCCGT+AGG + chr2_3:50042514-50042533 None:intergenic 35.0%
!! CGGCATGAACATTTTTGATT+TGG - chr2_3:50042515-50042534 Msa0296640:intron 35.0%
!!! ACATTTTTGATTTGGAGGCT+TGG - chr2_3:50042523-50042542 Msa0296640:intron 35.0%
CTCTTTCAAACAAAAGGCTT+TGG + chr2_3:50042666-50042685 None:intergenic 35.0%
ACCAAGCTCTTTCAAACAAA+AGG + chr2_3:50042672-50042691 None:intergenic 35.0%
TTAAATCAGACCTGAGTTTG+TGG - chr2_3:50042908-50042927 Msa0296640:intron 35.0%
TTCCAGAACTAAGATCATTG+TGG - chr2_3:50043106-50043125 Msa0296640:intron 35.0%
TGCAACATTAGAGCATGATA+GGG - chr2_3:50043168-50043187 Msa0296640:intron 35.0%
ATTAGAGCATGATAGGGAAA+AGG - chr2_3:50043174-50043193 Msa0296640:intron 35.0%
TAGTTCTTCTTCCACTCATT+AGG - chr2_3:50043262-50043281 Msa0296640:intron 35.0%
CATTGTTGTCTGTGTTATCA+TGG + chr2_3:50043292-50043311 None:intergenic 35.0%
ACAACAATGATATGGCATCA+TGG - chr2_3:50043303-50043322 Msa0296640:intron 35.0%
AAGCTAATTGTGAAACCTTG+AGG + chr2_3:50043488-50043507 None:intergenic 35.0%
CAGAGAACAACTTCATACAA+TGG - chr2_3:50043688-50043707 Msa0296640:intron 35.0%
AACTGATGAACTGATCTTCA+AGG + chr2_3:50043772-50043791 None:intergenic 35.0%
TGTGACAGGCAAAAAGTAAT+TGG + chr2_3:50043804-50043823 None:intergenic 35.0%
TGGTTTCTTCATTCAAGGTT+AGG + chr2_3:50043925-50043944 None:intergenic 35.0%
TGGAATGTTCTTGTTGAAGA+AGG + chr2_3:50043962-50043981 None:intergenic 35.0%
!! TTTTAAGTGTGTGAGAGATG+GGG + chr2_3:50044002-50044021 None:intergenic 35.0%
GGGATATTGAGCAAAAGAAA+AGG + chr2_3:50044031-50044050 None:intergenic 35.0%
TTTGGATTCAACATTACCAC+TGG - chr2_3:50044145-50044164 Msa0296640:CDS 35.0%
!! AGAGAGTTCTAAATTGTCAG+TGG + chr2_3:50044203-50044222 None:intergenic 35.0%
! ACTGACAATTTAGAACTCTC+TGG - chr2_3:50044202-50044221 Msa0296640:CDS 35.0%
CAATGTCAATGTGTTCAACT+TGG - chr2_3:50044287-50044306 Msa0296640:CDS 35.0%
!! TTGCTTTTGAGTCTCATTCA+AGG + chr2_3:50044315-50044334 None:intergenic 35.0%
! GGAGAACCTTTTCTTTTGAT+TGG - chr2_3:50044388-50044407 Msa0296640:five_prime_UTR 35.0%
!! ACTGGCTCTTGATATTTTTG+GGG + chr2_3:50044419-50044438 None:intergenic 35.0%
ACTGAAACAACCAAGATTTC+GGG + chr2_3:50044485-50044504 None:intergenic 35.0%
!! CTTCTCTAAGGTTGTTGAAA+GGG - chr2_3:50044543-50044562 Msa0296640:five_prime_UTR 35.0%
TTTGAGGGATGCATGATATA+TGG - chr2_3:50044671-50044690 Msa0296640:five_prime_UTR 35.0%
!! ATGTATGCATGATGATGGAT+TGG - chr2_3:50044756-50044775 Msa0296640:five_prime_UTR 35.0%
GGTACTTGGAGTGAAAATTC+AGG + chr2_3:50038990-50039009 None:intergenic 40.0%
TGACACACTCTCTCTATGTA+GGG + chr2_3:50039028-50039047 None:intergenic 40.0%
ATGACACACTCTCTCTATGT+AGG + chr2_3:50039029-50039048 None:intergenic 40.0%
TTCCCTCTCCTTCAAAATCA+AGG - chr2_3:50039185-50039204 Msa0296640:three_prime_UTR 40.0%
AAGAAGGAGGAGATGTTGTT+TGG + chr2_3:50039233-50039252 None:intergenic 40.0%
GCATGTCAAAATGGTGTTTG+AGG + chr2_3:50039312-50039331 None:intergenic 40.0%
CCTAACCTTGCTTAGCATTT+GGG + chr2_3:50039339-50039358 None:intergenic 40.0%
ACCTAACCTTGCTTAGCATT+TGG + chr2_3:50039340-50039359 None:intergenic 40.0%
ACAGTAACATGCCTCAAACT+TGG + chr2_3:50039616-50039635 None:intergenic 40.0%
!! GAAAAGAGGAAGAGTACCTA+TGG + chr2_3:50039803-50039822 None:intergenic 40.0%
AAGCATGAACACATGTGTGA+AGG - chr2_3:50040204-50040223 Msa0296640:three_prime_UTR 40.0%
ACCAAAACGTGACGAAGTTT+GGG + chr2_3:50040924-50040943 None:intergenic 40.0%
AACCAAAACGTGACGAAGTT+TGG + chr2_3:50040925-50040944 None:intergenic 40.0%
GCAATGATGAACTAAAGGGA+AGG - chr2_3:50041226-50041245 Msa0296640:three_prime_UTR 40.0%
AATTCTAGTGGTCAGCACAT+CGG + chr2_3:50041457-50041476 None:intergenic 40.0%
AGGTAACCCTTATGGAACAA+AGG - chr2_3:50041581-50041600 Msa0296640:three_prime_UTR 40.0%
CCTAGTCCTTTGTTCCATAA+GGG + chr2_3:50041590-50041609 None:intergenic 40.0%
ACCTAGTCCTTTGTTCCATA+AGG + chr2_3:50041591-50041610 None:intergenic 40.0%
TATGGAACAAAGGACTAGGT+TGG - chr2_3:50041591-50041610 Msa0296640:three_prime_UTR 40.0%
CATGGCGATATAGATACTCT+TGG + chr2_3:50041624-50041643 None:intergenic 40.0%
GCATGGGATAATAAGTCTTC+CGG + chr2_3:50041891-50041910 None:intergenic 40.0%
GAAGACTTATTATCCCATGC+AGG - chr2_3:50041891-50041910 Msa0296640:CDS 40.0%
TCAATCACAGCAGGTGATAA+AGG + chr2_3:50041934-50041953 None:intergenic 40.0%
TTTATCACCTGCTGTGATTG+AGG - chr2_3:50041933-50041952 Msa0296640:CDS 40.0%
!! AGGCATTGCACCATTTTGAT+TGG - chr2_3:50041959-50041978 Msa0296640:CDS 40.0%
!!! TGATTGGTTTTCAAAGGGGA+AGG - chr2_3:50041975-50041994 Msa0296640:CDS 40.0%
!!! GGTACCTGTTTTAGAAGCAA+TGG - chr2_3:50041996-50042015 Msa0296640:CDS 40.0%
AGCAATGGAGAAAGATCAGA+AGG - chr2_3:50042011-50042030 Msa0296640:CDS 40.0%
ATACATCTACCCGAGGTAAA+AGG - chr2_3:50042159-50042178 Msa0296640:CDS 40.0%
TACATCTACCCGAGGTAAAA+GGG - chr2_3:50042160-50042179 Msa0296640:CDS 40.0%
GTTTCCAAGTCTTAACAAGG+TGG - chr2_3:50042290-50042309 Msa0296640:intron 40.0%
AAGACCACCTTGTTAAGACT+TGG + chr2_3:50042297-50042316 None:intergenic 40.0%
AAACTGATCTTACACCTCTG+TGG - chr2_3:50042340-50042359 Msa0296640:intron 40.0%
AACTGATCTTACACCTCTGT+GGG - chr2_3:50042341-50042360 Msa0296640:intron 40.0%
!!! TTTTTGATTTGGAGGCTTGG+AGG - chr2_3:50042526-50042545 Msa0296640:intron 40.0%
!! GCCTTTTGTTTGAAAGAGCT+TGG - chr2_3:50042668-50042687 Msa0296640:CDS 40.0%
TGAAATGCTATCAATCCAGG+AGG + chr2_3:50042949-50042968 None:intergenic 40.0%
CCATGAAATGCTATCAATCC+AGG + chr2_3:50042952-50042971 None:intergenic 40.0%
! CCTGGATTGATAGCATTTCA+TGG - chr2_3:50042949-50042968 Msa0296640:intron 40.0%
TCCACGTTATAGATCCTTTC+TGG - chr2_3:50042977-50042996 Msa0296640:intron 40.0%
AATCCAAGCATATGCCAGAA+AGG + chr2_3:50042994-50043013 None:intergenic 40.0%
! TTTCTGGCATATGCTTGGAT+TGG - chr2_3:50042993-50043012 Msa0296640:intron 40.0%
TTCTGGCATATGCTTGGATT+GGG - chr2_3:50042994-50043013 Msa0296640:intron 40.0%
! TATGCTTGGATTGGGATATC+AGG - chr2_3:50043002-50043021 Msa0296640:intron 40.0%
TGTCATCCATTTCAATGGCA+GGG - chr2_3:50043059-50043078 Msa0296640:intron 40.0%
GTCCACAATGATCTTAGTTC+TGG + chr2_3:50043111-50043130 None:intergenic 40.0%
CTGCAACATTAGAGCATGAT+AGG - chr2_3:50043167-50043186 Msa0296640:intron 40.0%
AACTCGTAGTTGAGAAGTCA+TGG + chr2_3:50043200-50043219 None:intergenic 40.0%
GTTGTCTGTGTTATCATGGA+AGG + chr2_3:50043288-50043307 None:intergenic 40.0%
TAAAAAAACCTGCGTCCTCA+AGG - chr2_3:50043470-50043489 Msa0296640:intron 40.0%
AAGTCTGCGAAGTTCATCAA+GGG + chr2_3:50043839-50043858 None:intergenic 40.0%
AACTTCGCAGACTTCGTTAT+CGG - chr2_3:50043845-50043864 Msa0296640:intron 40.0%
GAAGGTGGTTTCTTCATTCA+AGG + chr2_3:50043930-50043949 None:intergenic 40.0%
TGAAGAAGGTGAGGAAATGA+AGG + chr2_3:50043948-50043967 None:intergenic 40.0%
TGTTCTTGTTGAAGAAGGTG+AGG + chr2_3:50043957-50043976 None:intergenic 40.0%
! TCTTCCTCAAATGCCCATTT+TGG - chr2_3:50044127-50044146 Msa0296640:CDS 40.0%
GAATCCAAAATGGGCATTTG+AGG + chr2_3:50044134-50044153 None:intergenic 40.0%
!! TTCAACATTACCACTGGCTT+TGG - chr2_3:50044151-50044170 Msa0296640:CDS 40.0%
! TGCTTTTAATCCAAAGCCAG+TGG + chr2_3:50044164-50044183 None:intergenic 40.0%
! TTCTGATGTGGCAGTGTTTT+TGG + chr2_3:50044230-50044249 None:intergenic 40.0%
GCCAGTTTACAAACTGAATC+CGG - chr2_3:50044433-50044452 Msa0296640:five_prime_UTR 40.0%
!! AAGATTTCGGGTTGAAATCC+CGG + chr2_3:50044473-50044492 None:intergenic 40.0%
GTTATTGAGAGGCTTCTCTA+AGG - chr2_3:50044531-50044550 Msa0296640:five_prime_UTR 40.0%
!! GCTTCTCTAAGGTTGTTGAA+AGG - chr2_3:50044542-50044561 Msa0296640:five_prime_UTR 40.0%
! GGTTGTTGAAAGGGATGTTT+TGG - chr2_3:50044552-50044571 Msa0296640:five_prime_UTR 40.0%
!!! GGATGTTTTGGCTTGAAGTA+TGG - chr2_3:50044564-50044583 Msa0296640:five_prime_UTR 40.0%
! TATGGCATCTTCCTTTGAGA+TGG - chr2_3:50044582-50044601 Msa0296640:five_prime_UTR 40.0%
!! ATGGCATCTTCCTTTGAGAT+GGG - chr2_3:50044583-50044602 Msa0296640:five_prime_UTR 40.0%
TGTGCATGTATGCATGATGA+TGG - chr2_3:50044751-50044770 Msa0296640:five_prime_UTR 40.0%
CTCTATGTAGGGTGTAGTTG+AGG + chr2_3:50039017-50039036 None:intergenic 45.0%
!! GTTTGGTGTGTGTCTATGCT+TGG + chr2_3:50039131-50039150 None:intergenic 45.0%
GAGACATTGGACTAAGAAGG+AGG + chr2_3:50039246-50039265 None:intergenic 45.0%
TTGGGTCAGGCATGTCAAAA+TGG + chr2_3:50039321-50039340 None:intergenic 45.0%
CCCAAATGCTAAGCAAGGTT+AGG - chr2_3:50039336-50039355 Msa0296640:three_prime_UTR 45.0%
AACTCTTTAAGTCCCTTGCC+TGG + chr2_3:50039643-50039662 None:intergenic 45.0%
CAAAACAAGTGCTCCACCAT+AGG - chr2_3:50039784-50039803 Msa0296640:three_prime_UTR 45.0%
!! AAGAGGAAGAGTACCTATGG+TGG + chr2_3:50039800-50039819 None:intergenic 45.0%
GTGTGTGTGAGAGAGAAAAG+AGG + chr2_3:50039817-50039836 None:intergenic 45.0%
GCTTGTGACTCTGTCTATGT+AGG + chr2_3:50040188-50040207 None:intergenic 45.0%
CATGAACACATGTGTGAAGG+TGG - chr2_3:50040207-50040226 Msa0296640:three_prime_UTR 45.0%
CACATGTGTGAAGGTGGATA+AGG - chr2_3:50040213-50040232 Msa0296640:three_prime_UTR 45.0%
! TCCCAAACTTCGTCACGTTT+TGG - chr2_3:50040920-50040939 Msa0296640:three_prime_UTR 45.0%
GGTCGTCTACCCAAAATTCT+TGG + chr2_3:50041043-50041062 None:intergenic 45.0%
ATCAGCACATTTGTGACCGT+TGG - chr2_3:50041398-50041417 Msa0296640:three_prime_UTR 45.0%
CCCTTATGGAACAAAGGACT+AGG - chr2_3:50041587-50041606 Msa0296640:three_prime_UTR 45.0%
! GTATGCTGCTTGATGCTACA+TGG + chr2_3:50041642-50041661 None:intergenic 45.0%
TAGGAATTGTCAACAAGGGC+AGG + chr2_3:50041757-50041776 None:intergenic 45.0%
! AGATAATGTGCTTGCTGCCT+CGG - chr2_3:50041798-50041817 Msa0296640:CDS 45.0%
CTTATTATCCCATGCAGGCT+TGG - chr2_3:50041896-50041915 Msa0296640:CDS 45.0%
AATGAGAACCAAGCCTGCAT+GGG + chr2_3:50041907-50041926 None:intergenic 45.0%
TGGAGAAAGATCAGAAGGTG+AGG - chr2_3:50042016-50042035 Msa0296640:CDS 45.0%
! CTAGCTATCCCTTTTACCTC+GGG + chr2_3:50042171-50042190 None:intergenic 45.0%
! GCTAGCTATCCCTTTTACCT+CGG + chr2_3:50042172-50042191 None:intergenic 45.0%
GTATCACAATGTCATCGTCG+AGG + chr2_3:50042320-50042339 None:intergenic 45.0%
TTCATGTCAATGTCCCACAG+AGG + chr2_3:50042357-50042376 None:intergenic 45.0%
CTGTGGGACATTGACATGAA+TGG - chr2_3:50042357-50042376 Msa0296640:intron 45.0%
TGGAAAAGTGAATGGAGCAG+TGG - chr2_3:50042377-50042396 Msa0296640:intron 45.0%
TCAATCCCAACGAATGTGCT+TGG - chr2_3:50042487-50042506 Msa0296640:intron 45.0%
CAATCCCAACGAATGTGCTT+GGG - chr2_3:50042488-50042507 Msa0296640:intron 45.0%
! ATATCATCATTGGGTTGCGC+AGG - chr2_3:50042569-50042588 Msa0296640:intron 45.0%
CAACTTCAATTGTTGCGCCA+AGG - chr2_3:50042730-50042749 Msa0296640:intron 45.0%
GCCAGAAAGGATCTATAACG+TGG + chr2_3:50042981-50043000 None:intergenic 45.0%
! GATCCTTTCTGGCATATGCT+TGG - chr2_3:50042988-50043007 Msa0296640:intron 45.0%
GTTGACGATGTTGAGAATGC+TGG - chr2_3:50043036-50043055 Msa0296640:intron 45.0%
!! GCTGGTGTCATCCATTTCAA+TGG - chr2_3:50043054-50043073 Msa0296640:intron 45.0%
GTGTCATCCATTTCAATGGC+AGG - chr2_3:50043058-50043077 Msa0296640:intron 45.0%
GGAAAAGCTATGTCTAGCCA+TGG + chr2_3:50043090-50043109 None:intergenic 45.0%
ATCATGGAAGGCCTAATGAG+TGG + chr2_3:50043276-50043295 None:intergenic 45.0%
TGCGAAGTTCATCAAGGGAT+TGG + chr2_3:50043834-50043853 None:intergenic 45.0%
GAAGTCTGCGAAGTTCATCA+AGG + chr2_3:50043840-50043859 None:intergenic 45.0%
AGAAGGTGAGGAAATGAAGG+TGG + chr2_3:50043945-50043964 None:intergenic 45.0%
TTATGGGATTGGAGGTGAGA+GGG + chr2_3:50044051-50044070 None:intergenic 45.0%
TTTATGGGATTGGAGGTGAG+AGG + chr2_3:50044052-50044071 None:intergenic 45.0%
GCCGGATTCAGTTTGTAAAC+TGG + chr2_3:50044437-50044456 None:intergenic 45.0%
GGGATTTCAACCCGAAATCT+TGG - chr2_3:50044472-50044491 Msa0296640:five_prime_UTR 45.0%
!! CATCTTCCTTTGAGATGGGT+GGG - chr2_3:50044587-50044606 Msa0296640:five_prime_UTR 45.0%
! TGGATGTGGATGTAGCTTTG+AGG - chr2_3:50044635-50044654 Msa0296640:five_prime_UTR 45.0%
!! GGATGTGGATGTAGCTTTGA+GGG - chr2_3:50044636-50044655 Msa0296640:five_prime_UTR 45.0%
!! GATGTGGATGTAGCTTTGAG+GGG - chr2_3:50044637-50044656 Msa0296640:five_prime_UTR 45.0%
!! TAGCTTTGAGGGGAACAGTA+GGG - chr2_3:50044647-50044666 Msa0296640:five_prime_UTR 45.0%
!!! AATATATTTTATTTTTTGAA+GGG + chr2_3:50039283-50039302 None:intergenic 5.0%
!!! TAATATATTTTATTTTTTGA+AGG + chr2_3:50039284-50039303 None:intergenic 5.0%
!! AATTGAAAAATTTAATAAAA+TGG + chr2_3:50041114-50041133 None:intergenic 5.0%
GTAGTTGAGGACGTGGTACT+TGG + chr2_3:50039004-50039023 None:intergenic 50.0%
CCTTGCTTAGCATTTGGGTC+AGG + chr2_3:50039334-50039353 None:intergenic 50.0%
CCTGACCCAAATGCTAAGCA+AGG - chr2_3:50039331-50039350 Msa0296640:three_prime_UTR 50.0%
AGGCATGTTACTGTCCTTCC+AGG - chr2_3:50039622-50039641 Msa0296640:three_prime_UTR 50.0%
TGTTACTGTCCTTCCAGGCA+AGG - chr2_3:50039627-50039646 Msa0296640:three_prime_UTR 50.0%
GTTACTGTCCTTCCAGGCAA+GGG - chr2_3:50039628-50039647 Msa0296640:three_prime_UTR 50.0%
CTTTAAGTCCCTTGCCTGGA+AGG + chr2_3:50039639-50039658 None:intergenic 50.0%
CGTCGAGACGCCTTTCTTAT+AGG - chr2_3:50039680-50039699 Msa0296640:three_prime_UTR 50.0%
! ACAGCTGTGGATGGCATTGA+TGG - chr2_3:50039760-50039779 Msa0296640:three_prime_UTR 50.0%
ACTTGGACCTTGCAGTAGCA+GGG + chr2_3:50040441-50040460 None:intergenic 50.0%
! TGTCCTCTTCTTTTCCCCTG+CGG - chr2_3:50041351-50041370 Msa0296640:three_prime_UTR 50.0%
! TCGTGTTATTGGTGACCGCA+CGG - chr2_3:50041476-50041495 Msa0296640:three_prime_UTR 50.0%
GGCAGCAAGCACATTATCTG+AGG + chr2_3:50041797-50041816 None:intergenic 50.0%
GAGTGATGTTGCAACAACCG+AGG + chr2_3:50041818-50041837 None:intergenic 50.0%
CAATGAGAACCAAGCCTGCA+TGG + chr2_3:50041908-50041927 None:intergenic 50.0%
ACCTGCTGTGATTGAGGTCA+AGG - chr2_3:50041939-50041958 Msa0296640:CDS 50.0%
AGAAGGTGAGGTCGCAGTTT+AGG - chr2_3:50042028-50042047 Msa0296640:CDS 50.0%
GAAGGTGAGGTCGCAGTTTA+GGG - chr2_3:50042029-50042048 Msa0296640:CDS 50.0%
AAGGTGAGGTCGCAGTTTAG+GGG - chr2_3:50042030-50042049 Msa0296640:CDS 50.0%
GCAGTTTAGGGGAGGTTCAT+CGG - chr2_3:50042041-50042060 Msa0296640:CDS 50.0%
CGGGTAGATGTATCCGAATG+TGG + chr2_3:50042152-50042171 None:intergenic 50.0%
CATTCGGATACATCTACCCG+AGG - chr2_3:50042152-50042171 Msa0296640:CDS 50.0%
GGAGCAGTGGAAACATGCAA+TGG - chr2_3:50042390-50042409 Msa0296640:intron 50.0%
TAGGCCCAAGCACATTCGTT+GGG + chr2_3:50042495-50042514 None:intergenic 50.0%
AACGAATGTGCTTGGGCCTA+CGG - chr2_3:50042495-50042514 Msa0296640:intron 50.0%
!! TTGATTTGGAGGCTTGGAGG+AGG - chr2_3:50042529-50042548 Msa0296640:intron 50.0%
TGAAGTTGCTGCCATGTGAC+TGG + chr2_3:50042718-50042737 None:intergenic 50.0%
TTATGGTAGAAGGGGAGCCT+TGG + chr2_3:50042750-50042769 None:intergenic 50.0%
ACCTGAGTTTGTGGCAGCTA+GGG - chr2_3:50042917-50042936 Msa0296640:intron 50.0%
GCTTTGCCCTGCCATTGAAA+TGG + chr2_3:50043068-50043087 None:intergenic 50.0%
TTGTGAAACCTTGAGGACGC+AGG + chr2_3:50043481-50043500 None:intergenic 50.0%
!! GGATTGGTGTCGAATGTGAC+AGG + chr2_3:50043818-50043837 None:intergenic 50.0%
GGGTTGTGAGTGCAGAGAAA+TGG + chr2_3:50043982-50044001 None:intergenic 50.0%
!! GCATCTTCCTTTGAGATGGG+TGG - chr2_3:50044586-50044605 Msa0296640:five_prime_UTR 50.0%
!! TCCTTTGAGATGGGTGGGTT+AGG - chr2_3:50044592-50044611 Msa0296640:five_prime_UTR 50.0%
!! CCTTTGAGATGGGTGGGTTA+GGG - chr2_3:50044593-50044612 Msa0296640:five_prime_UTR 50.0%
!! CTTTGAGATGGGTGGGTTAG+GGG - chr2_3:50044594-50044613 Msa0296640:five_prime_UTR 50.0%
!! GTAGCTTTGAGGGGAACAGT+AGG - chr2_3:50044646-50044665 Msa0296640:five_prime_UTR 50.0%
! AGGGGAACAGTAGGGTTTTG+AGG - chr2_3:50044655-50044674 Msa0296640:five_prime_UTR 50.0%
!! GGGGAACAGTAGGGTTTTGA+GGG - chr2_3:50044656-50044675 Msa0296640:five_prime_UTR 50.0%
GTAGGGTGTAGTTGAGGACG+TGG + chr2_3:50039011-50039030 None:intergenic 55.0%
ACCTTGCAGTAGCAGGGTGA+GGG + chr2_3:50040435-50040454 None:intergenic 55.0%
CACTTGGACCTTGCAGTAGC+AGG + chr2_3:50040442-50040461 None:intergenic 55.0%
TGACCGCAGGGGAAAAGAAG+AGG + chr2_3:50041357-50041376 None:intergenic 55.0%
GCAGGAACTAGTTCCGCAGA+CGG + chr2_3:50041739-50041758 None:intergenic 55.0%
GCCTTGACCTCAATCACAGC+AGG + chr2_3:50041943-50041962 None:intergenic 55.0%
GTAGGCCCAAGCACATTCGT+TGG + chr2_3:50042496-50042515 None:intergenic 55.0%
GACCTGAGTTTGTGGCAGCT+AGG - chr2_3:50042916-50042935 Msa0296640:intron 55.0%
TCCCTAGCTGCCACAAACTC+AGG + chr2_3:50042921-50042940 None:intergenic 55.0%
CAGCTAGGGACATTACCTCC+TGG - chr2_3:50042931-50042950 Msa0296640:intron 55.0%
TCAATGGCAGGGCAAAGCCA+TGG - chr2_3:50043070-50043089 Msa0296640:intron 55.0%
CCCTAACCCACCCATCTCAA+AGG + chr2_3:50044596-50044615 None:intergenic 55.0%
!! AGATGGGTGGGTTAGGGGAA+GGG - chr2_3:50044599-50044618 Msa0296640:five_prime_UTR 55.0%
GAGTGAGGACTGGATGGATG+TGG - chr2_3:50044621-50044640 Msa0296640:five_prime_UTR 55.0%
TCCCTCACCCTGCTACTGCA+AGG - chr2_3:50040431-50040450 Msa0296640:three_prime_UTR 60.0%
GACCTTGCAGTAGCAGGGTG+AGG + chr2_3:50040436-50040455 None:intergenic 60.0%
CGTGCAAACAGTGACCGCAG+GGG + chr2_3:50041368-50041387 None:intergenic 60.0%
GCGTGCAAACAGTGACCGCA+GGG + chr2_3:50041369-50041388 None:intergenic 60.0%
TGCGTGCAAACAGTGACCGC+AGG + chr2_3:50041370-50041389 None:intergenic 60.0%
GTCAGCACATCGGTGACCGT+TGG + chr2_3:50041447-50041466 None:intergenic 60.0%
! AAGGCGTGCTGCTGCGTTGT+TGG + chr2_3:50041710-50041729 None:intergenic 60.0%
ACGCCTTCAGCTACCGTCTG+CGG - chr2_3:50041723-50041742 Msa0296640:CDS 60.0%
GTTCCGCAGACGGTAGCTGA+AGG + chr2_3:50041729-50041748 None:intergenic 60.0%
GTGAGGTCGCAGTTTAGGGG+AGG - chr2_3:50042033-50042052 Msa0296640:CDS 60.0%
TTGTGCGACTCGAGCCTGTG+AGG - chr2_3:50042691-50042710 Msa0296640:intron 60.0%
GCCTGTGAGGTCCAGTCACA+TGG - chr2_3:50042704-50042723 Msa0296640:intron 60.0%
GCCATGTGACTGGACCTCAC+AGG + chr2_3:50042708-50042727 None:intergenic 60.0%
TCCGGCGAGTCATCGATGAC+CGG - chr2_3:50044451-50044470 Msa0296640:five_prime_UTR 60.0%
!! GAGATGGGTGGGTTAGGGGA+AGG - chr2_3:50044598-50044617 Msa0296640:five_prime_UTR 60.0%
! TGGGTTAGGGGAAGGGAGTG+AGG - chr2_3:50044606-50044625 Msa0296640:five_prime_UTR 60.0%
TAGGGGAAGGGAGTGAGGAC+TGG - chr2_3:50044611-50044630 Msa0296640:five_prime_UTR 60.0%
GGAAGGGAGTGAGGACTGGA+TGG - chr2_3:50044615-50044634 Msa0296640:five_prime_UTR 60.0%
CCCGGTCATCGATGACTCGC+CGG + chr2_3:50044455-50044474 None:intergenic 65.0%
CCGGCGAGTCATCGATGACC+GGG - chr2_3:50044452-50044471 Msa0296640:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50038921 50044954 50038921 ID=Msa0296640;Name=Msa0296640
chr2_3 mRNA 50038921 50044954 50038921 ID=Msa0296640-mRNA-1;Parent=Msa0296640;Name=Msa0296640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=647|0.66|0.75|1|1|1|4|2724|345
chr2_3 exon 50038921 50042292 50038921 ID=Msa0296640-mRNA-1:exon:15721;Parent=Msa0296640-mRNA-1
chr2_3 exon 50042594 50042689 50042594 ID=Msa0296640-mRNA-1:exon:15720;Parent=Msa0296640-mRNA-1
chr2_3 exon 50042803 50042858 50042803 ID=Msa0296640-mRNA-1:exon:15719;Parent=Msa0296640-mRNA-1
chr2_3 exon 50044070 50044954 50044070 ID=Msa0296640-mRNA-1:exon:15718;Parent=Msa0296640-mRNA-1
chr2_3 five_prime_UTR 50044308 50044954 50044308 ID=Msa0296640-mRNA-1:five_prime_utr;Parent=Msa0296640-mRNA-1
chr2_3 CDS 50044070 50044307 50044070 ID=Msa0296640-mRNA-1:cds;Parent=Msa0296640-mRNA-1
chr2_3 CDS 50042803 50042858 50042803 ID=Msa0296640-mRNA-1:cds;Parent=Msa0296640-mRNA-1
chr2_3 CDS 50042594 50042689 50042594 ID=Msa0296640-mRNA-1:cds;Parent=Msa0296640-mRNA-1
chr2_3 CDS 50041645 50042292 50041645 ID=Msa0296640-mRNA-1:cds;Parent=Msa0296640-mRNA-1
chr2_3 three_prime_UTR 50038921 50041644 50038921 ID=Msa0296640-mRNA-1:three_prime_utr;Parent=Msa0296640-mRNA-1
Gene Sequence

>Msa0296640

ATGTCTATTTTGGATTGGAACAATAAAATGCAGCTGCATATATCTCCAAGTTTGAGGCATGTTACTGTCCTTCCAGGCAAGGGACTTAAAGAGTTTATCAAAGTGAAAGTTGCGTCGAGACGCCTTTCTTATAGGATGCTCTTCTATTCACTCTTGTTCTTCACTTTTCTTCTGAGGTTTGTGTTTGTTTTAACAGCTGTGGATGGCATTGATGGACAAAACAAGTGCTCCACCATAGGTTGTCTGGGAAAAAAATTAGGGCCAAGAATTTTGGGTAGACGACCTGAATCAACTGTCCCAGAAGTGATATACCAAACTTTAGATGAACCAATTGGCAATGATGAACTAAAGGGAAGGTTTGATATTCCACAAACTTTAGAAGAGTTCATGGTAACCCTTATGGAACAAAGGACTAGGTTGGCCAAAATCCAAGAGTATCTATATCGCCATGTAGCATCAAGCAGCATACCGAAACAACTTCATTGTCTTGACTTGAGATTAGCACATGAGCATACCAACAACGCAGCAGCACGCCTTCAGCTACCGTCTGCGGAACTAGTTCCTGCCCTTGTTGACAATTCCTATTACCATTTTGTTTTAGCCTCAGATAATGTGCTTGCTGCCTCGGTTGTTGCAACATCACTCGTTCGTAACTGTTTACGACCTAATAAGGTTGTTATACACATAATTACAGACCGGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATCCTTTATCACCTGCTGTGATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTTCAAAGGGGAAGGTACCTGTTTTAGAAGCAATGGAGAAAGATCAGAAGGTGAGGTCGCAGTTTAGGGGAGGTTCATCGGCTATAGTTGCGAATACATCTGAGAAGCCAAATGTTATTGCAGCAAAACTACAGGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATTCGGATACATCTACCCGAGGTAAAAGGGATAGCTAGCATAGCAAGTAAATCATTTTTGTTTTTTGATAGCTTATAA
Protein sequence

>Msa0296640

MSILDWNNKMQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGQNKCSTIGCLGKKLGPRILGRRPESTVPEVIYQTLDEPIGNDELKGRFDIPQTLEEFMVTLMEQRTRLAKIQEYLYRHVASSSIPKQLHCLDLRLAHEHTNNAAARLQLPSAELVPALVDNSYYHFVLASDNVLAASVVATSLVRNCLRPNKVVIHIITDRKTYYPMQAWFSLHPLSPAVIEVKALHHFDWFSKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTSEKPNVIAAKLQALSPKYNSVMNHIRIHLPEVKGIASIASKSFLFFDSL*