AlfalfaGEDB | MS.gene51880

M. sativa cultivar XinJiangDaYe / MS.gene51880

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00448.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51880.t1	XP_003624618.1	97.8	136	3	0	1	136	155	290	1.10E-68	270

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51880.t1	Q94AQ8	63.2	136	48	1	1	136	150	283	4.3e-42	172.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51880.t1	A2Q5N9	97.8	136	3	0	1	136	155	290	7.8e-69	270.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene51880	0.874354	7.21E-68	-1.69E-46
MS.gene049171	MS.gene51880	0.928133	4.44E-92	-1.69E-46
MS.gene049173	MS.gene51880	0.875533	2.86E-68	-1.69E-46
MS.gene049217	MS.gene51880	0.920972	6.49E-88	-1.69E-46
MS.gene049222	MS.gene51880	0.937421	3.56E-98	-1.69E-46
MS.gene049232	MS.gene51880	0.887331	1.57E-72	-1.69E-46
MS.gene049285	MS.gene51880	0.950575	1.24E-108	-1.69E-46
MS.gene049320	MS.gene51880	0.943026	2.52E-102	-1.69E-46
MS.gene04939	MS.gene51880	0.832085	1.16E-55	-1.69E-46
MS.gene049396	MS.gene51880	0.813772	2.16E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51880.t1	MTR_7g085490	97.794	136	3	0	1	136	155	290	9.57e-93	277
MS.gene51880.t1	MTR_7g085470	89.167	120	6	1	134	246	201	320	7.61e-72	222
MS.gene51880.t1	MTR_7g085570	69.149	94	27	1	155	246	192	285	4.70e-37	132
MS.gene51880.t1	MTR_4g010050	58.491	106	26	3	134	226	225	325	1.17e-28	113
MS.gene51880.t1	MTR_2g104050	60.440	91	24	2	134	217	225	310	2.91e-26	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51880.t1	AT1G64770	62.590	139	50	1	1	139	150	286	8.95e-55	178
MS.gene51880.t1	AT1G64770	62.774	137	49	1	1	137	150	284	3.30e-54	179
MS.gene51880.t1	AT1G64770	63.235	136	48	1	1	136	150	283	3.51e-54	178
MS.gene51880.t1	AT1G48900	60.377	106	24	3	134	226	225	325	3.90e-31	119
MS.gene51880.t1	AT1G48900	65.934	91	19	2	134	217	225	310	5.49e-31	119
MS.gene51880.t1	AT1G15310	50.833	120	43	4	134	246	225	335	1.90e-28	112
MS.gene51880.t1	AT5G49500	59.341	91	25	2	134	217	105	190	2.77e-26	105
MS.gene51880.t1	AT5G49500	59.341	91	25	2	134	217	227	312	5.10e-26	105

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Find 58 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCTTTGTTCTTTCTT+TGG	0.192458	7.4:-21850899	None:intergenic
AAAATATGAAATCATTGATC+AGG	0.416361	7.4:+21850939	MS.gene51880:CDS
AAAATGGATGGCTATGCCAT+GGG	0.631223	7.4:+21851307	MS.gene51880:CDS
AAAATGGCTTAATATAGCAT+TGG	0.535095	7.4:-21850638	None:intergenic
AAAGCCTTTGTTCTTTCTTT+GGG	0.310843	7.4:-21850898	None:intergenic
AACAAGTGGTGCAACGATGG+AGG	0.576961	7.4:-21851716	None:intergenic
AAGAGTCCGGTCATATTCAT+AGG	0.428991	7.4:+21851524	MS.gene51880:CDS
ACAAGTGGTGCAACGATGGA+GGG	0.576239	7.4:-21851715	None:intergenic
ACCTCCCAAAGAAAGAACAA+AGG	0.664272	7.4:+21850894	MS.gene51880:CDS
ACTGCTGTTGCCATGCTCAC+AGG	0.530706	7.4:-21850577	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCCTTTGTTCTTTCTT+TGG	-	chr7.4:21850902-21850921	None:intergenic	30.0%
AAAGCCTTTGTTCTTTCTTT+GGG	-	chr7.4:21850901-21850920	None:intergenic	30.0%
ATGGAGTCAAGATTTGAAAA+GGG	-	chr7.4:21850741-21850760	None:intergenic	30.0%
TTATTCTCAAGGAGAGTAAT+AGG	-	chr7.4:21850853-21850872	None:intergenic	30.0%
TTTAGATTTAAGAGAAGAGG+TGG	+	chr7.4:21850658-21850677	MS.gene51880:CDS	30.0%
CCTAATAGACGACTAACAAA+CGG	-	chr7.4:21851593-21851612	None:intergenic	35.0%
CTCTACTCATCTTATTCTCA+AGG	-	chr7.4:21850864-21850883	None:intergenic	35.0%
CTTACGACTACAATGATCAA+AGG	-	chr7.4:21851236-21851255	None:intergenic	35.0%
GATGGAGTCAAGATTTGAAA+AGG	-	chr7.4:21850742-21850761	None:intergenic	35.0%
TGGAGTCAAGATTTGAAAAG+GGG	-	chr7.4:21850740-21850759	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	21850553	21851745	21850553	ID=MS.gene51880
chr7.4	mRNA	21850553	21851745	21850553	ID=MS.gene51880.t1;Parent=MS.gene51880
chr7.4	exon	21850553	21850960	21850553	ID=MS.gene51880.t1.exon1;Parent=MS.gene51880.t1
chr7.4	CDS	21850553	21850960	21850553	ID=cds.MS.gene51880.t1;Parent=MS.gene51880.t1
chr7.4	exon	21851229	21851334	21851229	ID=MS.gene51880.t1.exon2;Parent=MS.gene51880.t1
chr7.4	CDS	21851229	21851334	21851229	ID=cds.MS.gene51880.t1;Parent=MS.gene51880.t1
chr7.4	exon	21851519	21851745	21851519	ID=MS.gene51880.t1.exon3;Parent=MS.gene51880.t1
chr7.4	CDS	21851519	21851745	21851519	ID=cds.MS.gene51880.t1;Parent=MS.gene51880.t1

Gene Sequence

>MS.gene51880

ATGACTTATATCGTGTCCCTCTATCCTGTGAGCATGGCAACAGCAGTTATAGTTAAGAACAAATCTCCAAAACCTGTTACTCTAACCAATGCTATATTAAGCCATTTTAGATTTAAGAGAAGAGGTGGTGCGGCAATTAAAGGTCTTCAAACCTGCTCATACTGCTCACACCCTCCTCTTGCTTCCCCTTTTCAAATCTTGACTCCATCAGAAGCAATGAAAACCGAGTCTCAAAGGTTGATTTCATTTGGTGCTGAGCCTGAATTGAAGCCAGGTTCATGGACTCAACAAGGTGTTCCTATTACTCTCCTTGAGAATAAGATGAGTAGAGTTTTTGCTGCACCTCCCAAAGAAAGAACAAAGGCTTTTTATAACACACCGCCTTCAAAATATGAAATCATTGATCAGGTTAGAATGACGAGTTTCATTTTGATACAACACTTTTTACACAGTCAAACAATCATACTTTGAGTCTAATTACTCAAAGTCACATATAAGATGATTTGTGATTGGTTGATTGATAGTGTAAATGATCTTTACACAGACTATGCGTACCGATTTAGTTCTAGAACGATTTACATTGTGGACAAGTGACCAAACATTGTGGACACAGACTATGCGTACCGATTAAGTTCTAGATCTTGTTATATTGGTTATCGATGGCAATATTGGTCAGCATGCCTTTGATCATTGTAGTCGTAAGCAGGCAACAGCATTTACACATAGTGTTGACATTGGAGCTGTAATTGTTTCTAAAATGGATGGCTATGCCATGGGTGGTGGTTCTCTTAGCGCATAAGTTACCAATTCACTTTAAAGTAAGAGATCTTAACCGCTAAAAAATTCAATTGTTGATATTACACGAATAACAATTGAATTGCTTAAAATGTATTCACTTAGATATATTTTTTTTATGTGTTTTGGGTACATATTGGTCTTATTAATGTTATATGTGCAGTGTTGCAGCAACAAAGAGTCCGGTCATATTCATAGGAACTGGTGAACATATGGATGAGTTTGAAGTTTTTGAAGTTAAGCCGTTTGTTAGTCGTCTATTAGGCATGGATGACTGGTATGAGTTTATTGACAGAGTTTATGAAGTGCCTGAATTGCCTCTAAACCTGCCAGAAAGAAAAATCTGGATGCCTCCACGTGCGTTTTTCCCTCCATCGTTGCACCACTTGTTTGACTGA

Protein sequence

>MS.gene51880.t1

MTYIVSLYPVSMATAVIVKNKSPKPVTLTNAILSHFRFKRRGGAAIKGLQTCSYCSHPPLASPFQILTPSEAMKTESQRLISFGAEPELKPGSWTQQGVPITLLENKMSRVFAAPPKERTKAFYNTPPSKYEIIDQHAFDHCSRKQATAFTHSVDIGAVIVSKMDGYAMGGATKSPVIFIGTGEHMDEFEVFEVKPFVSRLLGMDDWYEFIDRVYEVPELPLNLPERKIWMPPRAFFPPSLHHLFD