AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641800 MtrunA17_Chr4g0026581 97.638 381 9 0 1 381 1 381 0.0 782
Msa0641800 MtrunA17_Chr4g0027491 74.211 380 95 2 3 379 8 387 0.0 612
Msa0641800 MtrunA17_Chr1g0208111 74.114 367 92 2 3 366 8 374 0.0 587
Msa0641800 MtrunA17_Chr1g0208571 69.921 379 93 3 3 378 8 368 0.0 555
Msa0641800 MtrunA17_Chr2g0300401 61.633 245 67 3 3 244 8 228 1.50e-103 305
Msa0641800 MtrunA17_Chr2g0327981 28.736 348 193 11 14 357 38 334 1.93e-30 119
Msa0641800 MtrunA17_Chr4g0023721 56.989 93 39 1 3 94 8 100 8.11e-30 111
Msa0641800 MtrunA17_Chr1g0195521 26.648 364 195 16 14 357 118 429 2.06e-23 101
Msa0641800 MtrunA17_Chr4g0067461 24.348 345 202 11 16 357 113 401 1.51e-21 95.5
Msa0641800 MtrunA17_Chr1g0182091 24.701 251 142 9 110 357 5 211 3.39e-13 68.6
Msa0641800 MtrunA17_Chr3g0145871 78.125 32 7 0 87 118 1 32 5.30e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641800 AT1G08200.1 75.066 381 92 2 2 379 6 386 0.0 616
Msa0641800 AT2G27860.1 74.016 381 96 2 2 379 6 386 0.0 606
Msa0641800 AT3G46440.2 27.586 348 197 10 14 357 29 325 1.65e-28 114
Msa0641800 AT3G46440.1 27.586 348 197 10 14 357 29 325 1.65e-28 114
Msa0641800 AT5G59290.4 27.299 348 198 11 14 357 1 297 5.77e-28 112
Msa0641800 AT5G59290.1 27.299 348 198 11 14 357 30 326 8.23e-28 112
Msa0641800 AT5G59290.3 27.350 351 200 11 11 357 20 319 1.49e-27 111
Msa0641800 AT5G59290.2 27.299 348 198 11 14 357 45 341 1.74e-27 111
Msa0641800 AT2G28760.1 27.746 346 199 12 14 357 31 327 5.85e-27 110
Msa0641800 AT2G28760.2 27.746 346 199 12 14 357 31 327 5.85e-27 110
Msa0641800 AT2G28760.3 27.746 346 199 12 14 357 31 327 5.85e-27 110
Msa0641800 AT3G53520.1 28.000 350 192 15 14 357 120 415 9.57e-27 110
Msa0641800 AT2G28760.4 28.324 346 197 13 14 357 62 358 1.25e-26 109
Msa0641800 AT3G53520.2 28.571 350 188 16 14 357 120 413 1.38e-24 104
Msa0641800 AT2G47650.2 26.361 349 205 15 14 357 121 422 5.15e-24 103
Msa0641800 AT3G62830.2 26.361 349 199 14 14 357 119 414 7.99e-24 102
Msa0641800 AT3G62830.1 26.361 349 199 14 14 357 119 414 7.99e-24 102
Msa0641800 AT2G47650.1 25.788 349 201 14 14 357 121 416 3.28e-23 100
Msa0641800 AT3G53520.3 27.059 255 147 11 14 264 120 339 3.09e-15 76.6

Find 99 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTCCATTTGCTCTATC+AGG 0.212687 4_3:-42597288 None:intergenic
TTAACAGATACTTCATTATC+TGG 0.251368 4_3:-42597327 None:intergenic
AAGAAAGCAAGAGACAAATA+AGG 0.295968 4_3:-42598135 None:intergenic
TTTCTACCTGTGAGGTCTTT+GGG 0.299135 4_3:+42596171 Msa0641800:CDS
ATGACAGACAGGCTCATTTA+TGG 0.300625 4_3:+42596591 Msa0641800:CDS
CTATTGTGAGACCTTATAAC+TGG 0.307051 4_3:+42596901 Msa0641800:CDS
TGTGGAAGTTAGTTAATAAC+TGG 0.337606 4_3:-42595463 None:intergenic
GCTAGCTGAGCTGATGATAA+AGG 0.338715 4_3:+42597353 Msa0641800:CDS
ATCAACTCTACAAGTTGAAT+TGG 0.340496 4_3:+42597936 Msa0641800:exon
TATGGCTTTGTGAGAAGTTT+CGG 0.341270 4_3:-42595668 None:intergenic
GGATTATAACACGCGGCCTT+TGG 0.360459 4_3:+42595968 Msa0641800:CDS
AGTTCATCAAGAGATGTCTT+TGG 0.360698 4_3:-42597835 None:intergenic
TGATATAGAGAAAGGTTCTC+TGG 0.371467 4_3:-42597152 None:intergenic
CTTGGTCCAATCCAGTTATA+AGG 0.372591 4_3:-42596912 None:intergenic
CCAGGAATGAAGTCCATTCT+TGG 0.373462 4_3:-42596930 None:intergenic
GAGAAAATGCAGAGAGGAAG+AGG 0.397181 4_3:-42595502 None:intergenic
CTGAAACAAGCTAAAACTCT+TGG 0.409574 4_3:-42596978 None:intergenic
CCAAGAATGGACTTCATTCC+TGG 0.411557 4_3:+42596930 Msa0641800:CDS
GACCATCTCTGTTTATGAAC+TGG 0.420386 4_3:-42596549 None:intergenic
TCCTTGATAAGTCTCATCCT+TGG 0.421329 4_3:+42595725 Msa0641800:CDS
GTGTGATTGGCTTTCCATCC+AGG 0.428127 4_3:-42595579 None:intergenic
TGCATCTTTGATATAGAGAA+AGG 0.428990 4_3:-42597160 None:intergenic
GACATCTCTTGATGAACTGT+TGG 0.432077 4_3:+42597840 Msa0641800:CDS
TTCAAGATGGTGATTGAAGA+AGG 0.434085 4_3:-42595431 None:intergenic
TGTAGAGTTGATCAAGTTGA+AGG 0.437543 4_3:-42597925 None:intergenic
AGAGGAGACATCAATGACTA+TGG 0.439801 4_3:-42595686 None:intergenic
AAGCTTTGACAAGAGTTTCA+AGG 0.448052 4_3:-42595795 None:intergenic
CTGGTGATGATTGTCATGTC+AGG 0.448491 4_3:-42597569 None:intergenic
CATATTGAGATCGGTGTGAT+TGG 0.458540 4_3:-42595592 None:intergenic
TCTTTGAGCTTGTAATATTG+AGG 0.462050 4_3:-42596501 None:intergenic
CCTTGATAAGTCTCATCCTT+GGG 0.467401 4_3:+42595726 Msa0641800:CDS
GTGAGACCTTATAACTGGAT+TGG 0.470330 4_3:+42596906 Msa0641800:CDS
ATAGCTGAGCATGCGGAGAA+TGG 0.470908 4_3:+42596867 Msa0641800:intron
AGAAAGCAAGAGACAAATAA+GGG 0.473650 4_3:-42598134 None:intergenic
TAACTGGATTGGACCAAGAA+TGG 0.477010 4_3:+42596917 Msa0641800:CDS
GATAACCCTGATAGAGCAAA+TGG 0.495280 4_3:+42597282 Msa0641800:CDS
TAACAGATACTTCATTATCT+GGG 0.496503 4_3:-42597326 None:intergenic
ATATGCATGATCGGCGGTGG+TGG 0.496822 4_3:+42595610 Msa0641800:CDS
TGTACCTTTCTATACTCCTC+AGG 0.497124 4_3:-42596215 None:intergenic
ATGTCTGATGTTGATATTGA+AGG 0.498197 4_3:-42597870 None:intergenic
GGAAAGAGAAAAGGCGTGTG+TGG 0.500447 4_3:-42595481 None:intergenic
ACTCTTGGGACACCATCACT+TGG 0.500534 4_3:-42596963 None:intergenic
TGAAACAAGCTAAAACTCTT+GGG 0.503701 4_3:-42596977 None:intergenic
GACTTCATTCCTGGTGTGGA+TGG 0.510816 4_3:+42596939 Msa0641800:CDS
AGAGGAAGAGGAAAGAGAAA+AGG 0.515563 4_3:-42595490 None:intergenic
CGACAAAATACCAAGCTGCC+TGG 0.520100 4_3:-42597588 None:intergenic
TAATTTCATTGATGCGATCC+CGG 0.525963 4_3:+42596004 Msa0641800:CDS
TTTCATGGATCGAGTGAACC+TGG 0.527866 4_3:+42595561 Msa0641800:exon
AAGGTTATGATGACAGTGAT+AGG 0.529228 4_3:+42597540 Msa0641800:CDS
GAGGTCTTTGGGAAGACTAT+AGG 0.530894 4_3:+42596182 Msa0641800:CDS
TGCCTCTAGTCTATCAACTC+TGG 0.531156 4_3:+42597490 Msa0641800:CDS
GTTTGAGCGGCTCGCCACGC+AGG 0.531281 4_3:-42597110 None:intergenic
AGCAAGAGACAAATAAGGGA+AGG 0.536376 4_3:-42598130 None:intergenic
TGCTGCAATTTGCACGCCAG+CGG 0.538689 4_3:+42595947 Msa0641800:CDS
GGTGTGGATGGCCCAAGTGA+TGG 0.538944 4_3:+42596951 Msa0641800:CDS
CCCAAGGATGAGACTTATCA+AGG 0.539968 4_3:-42595726 None:intergenic
CTATATCAAAGATGCAATTG+AGG 0.540832 4_3:+42597167 Msa0641800:CDS
TGTTGTGGAGTGAGAGAGAG+AGG 0.540983 4_3:-42595526 None:intergenic
ATCGGCGGTGGTGGATTCAT+CGG 0.541956 4_3:+42595619 Msa0641800:CDS
ATTTGTCAGATTGTCTCTCA+TGG 0.544220 4_3:-42598000 None:intergenic
ACAATCATCACCAGGCAGCT+TGG 0.544555 4_3:+42597578 Msa0641800:CDS
GAGCCGCTCAAACTTGTTGA+TGG 0.544603 4_3:+42597120 Msa0641800:CDS
TGTGTCCATTTGCTCTATCA+GGG 0.545363 4_3:-42597287 None:intergenic
AAATGGACACATCTTTAATG+TGG 0.547790 4_3:+42597299 Msa0641800:CDS
GATATAGAGAAAGGTTCTCT+GGG 0.550685 4_3:-42597151 None:intergenic
TTTCATTAAGGTATATGCAA+AGG 0.553205 4_3:+42597454 Msa0641800:intron
CATTAAGGTATATGCAAAGG+TGG 0.554916 4_3:+42597457 Msa0641800:intron
TCAATATGCATGATCGGCGG+TGG 0.556042 4_3:+42595607 Msa0641800:CDS
TCATTTGATGAAACTCGATA+CGG 0.560664 4_3:-42595753 None:intergenic
CTCTTGGGACACCATCACTT+GGG 0.562862 4_3:-42596962 None:intergenic
CCGATCTCAATATGCATGAT+CGG 0.570177 4_3:+42595601 Msa0641800:CDS
GTGCAAAGCAGATGACAGAC+AGG 0.570500 4_3:+42596580 Msa0641800:CDS
ATGGATCGAGTGAACCTGGA+TGG 0.570748 4_3:+42595565 Msa0641800:CDS
GTCCAGTTCATAAACAGAGA+TGG 0.576229 4_3:+42596547 Msa0641800:CDS
AGAGTTGATAGACTAGAGGC+AGG 0.577132 4_3:-42597488 None:intergenic
TCTGCCTGAGGAGTATAGAA+AGG 0.581092 4_3:+42596211 Msa0641800:CDS
AGTCTTCCCAAAGACCTCAC+AGG 0.585441 4_3:-42596177 None:intergenic
AATGGACACATCTTTAATGT+GGG 0.590992 4_3:+42597300 Msa0641800:CDS
TCACTTGGGCCATCCACACC+AGG 0.593613 4_3:-42596948 None:intergenic
CCGCTCAAACTTGTTGATGG+TGG 0.594336 4_3:+42597123 Msa0641800:CDS
GGCCGCGTGTTATAATCCGC+TGG 0.595657 4_3:-42595963 None:intergenic
CCGATCATGCATATTGAGAT+CGG 0.601052 4_3:-42595601 None:intergenic
TATAGGTAGCTTTCTGCCTG+AGG 0.613942 4_3:+42596199 Msa0641800:CDS
GCAAGAGACAAATAAGGGAA+GGG 0.619851 4_3:-42598129 None:intergenic
CTGACATGACAATCATCACC+AGG 0.624329 4_3:+42597570 Msa0641800:CDS
AGAGGAGAGAAAATGCAGAG+AGG 0.633096 4_3:-42595508 None:intergenic
TGTCTGATGTTGATATTGAA+GGG 0.635641 4_3:-42597869 None:intergenic
ATCCAGAGTTGATAGACTAG+AGG 0.637210 4_3:-42597492 None:intergenic
AACTCGATACGGTTAGCCCA+AGG 0.640625 4_3:-42595742 None:intergenic
TAAATCTATAGCTGAGCATG+CGG 0.640819 4_3:+42596860 Msa0641800:intron
TGGTGATGATTGTCATGTCA+GGG 0.642852 4_3:-42597568 None:intergenic
TTACTGTAAATAGTATCCAA+AGG 0.643272 4_3:-42595984 None:intergenic
AATGGACTTCATTCCTGGTG+TGG 0.645922 4_3:+42596935 Msa0641800:CDS
CGCCAGCGGATTATAACACG+CGG 0.650284 4_3:+42595961 Msa0641800:CDS
TATATGATACACTAATTGTG+AGG 0.660077 4_3:+42598024 Msa0641800:three_prime_UTR
CCACCATCAACAAGTTTGAG+CGG 0.662331 4_3:-42597123 None:intergenic
TTGCTCCAGAATCTCCTGCG+TGG 0.687575 4_3:+42597096 Msa0641800:intron
ATCTCAATATGCATGATCGG+CGG 0.697020 4_3:+42595604 Msa0641800:CDS
TTTCATTGATGCGATCCCGG+TGG 0.705047 4_3:+42596007 Msa0641800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTGATTTTGAA+TGG + chr4_3:42595896-42595915 Msa0641800:intron 10.0%
!!! TTATTTTTTGATAATTTCAT+TGG + chr4_3:42596038-42596057 Msa0641800:intron 10.0%
!! AAAAATAAAAAATTTACCAC+CGG - chr4_3:42596026-42596045 None:intergenic 15.0%
!! CTAAAAATTAAACATATCTT+TGG - chr4_3:42596404-42596423 None:intergenic 15.0%
!! GTAATTATATGTATATATGT+TGG + chr4_3:42596730-42596749 Msa0641800:intron 15.0%
!! ATAAAAATGGAACAAGAAAA+TGG - chr4_3:42595849-42595868 None:intergenic 20.0%
!! AAAATAAAAAATTTACCACC+GGG - chr4_3:42596025-42596044 None:intergenic 20.0%
!!! CGAATTTTTAAAACATAAGA+TGG + chr4_3:42596273-42596292 Msa0641800:intron 20.0%
!!! TTCTAAATTAGTCTTTACAT+AGG + chr4_3:42597380-42597399 Msa0641800:intron 20.0%
!!! TTATTTCTCTTGAAAAACAA+AGG - chr4_3:42597412-42597431 None:intergenic 20.0%
!!! CTCATTTTGTTTTTTCATTA+AGG + chr4_3:42597442-42597461 Msa0641800:intron 20.0%
! TTACTGTAAATAGTATCCAA+AGG - chr4_3:42595987-42596006 None:intergenic 25.0%
! TTATTATGAGTTGTGATTGA+TGG + chr4_3:42596093-42596112 Msa0641800:intron 25.0%
!! TATGCAGATTAAATTTTGCA+CGG + chr4_3:42596124-42596143 Msa0641800:intron 25.0%
! TGATTGAACGTAATCATATT+CGG + chr4_3:42596344-42596363 Msa0641800:intron 25.0%
! TACATAGATTGTGATTGTTA+TGG + chr4_3:42596794-42596813 Msa0641800:intron 25.0%
! TAACAGATACTTCATTATCT+GGG - chr4_3:42597329-42597348 None:intergenic 25.0%
! TTAACAGATACTTCATTATC+TGG - chr4_3:42597330-42597349 None:intergenic 25.0%
! TCAAGAGAAATAAACAACTT+TGG + chr4_3:42597419-42597438 Msa0641800:intron 25.0%
! TTTCATTAAGGTATATGCAA+AGG + chr4_3:42597454-42597473 Msa0641800:intron 25.0%
!! TTTTGTATCTATGCATTGTT+TGG + chr4_3:42597618-42597637 Msa0641800:intron 25.0%
!! CAATGCTTTTAACAAAATCA+CGG - chr4_3:42597677-42597696 None:intergenic 25.0%
! TATATGATACACTAATTGTG+AGG + chr4_3:42598024-42598043 Msa0641800:three_prime_UTR 25.0%
!! ATTCAAAAATCTAGAGTTAC+AGG - chr4_3:42598104-42598123 None:intergenic 25.0%
!!! CTGGTTTCTTTTTTTCAAGA+TGG - chr4_3:42595447-42595466 None:intergenic 30.0%
TGTGGAAGTTAGTTAATAAC+TGG - chr4_3:42595466-42595485 None:intergenic 30.0%
TCATTTGATGAAACTCGATA+CGG - chr4_3:42595756-42595775 None:intergenic 30.0%
ACAAGAAAATGGAAAAGAAG+AGG - chr4_3:42595838-42595857 None:intergenic 30.0%
TACAGCAAGAATCTCTTTAT+GGG + chr4_3:42596234-42596253 Msa0641800:intron 30.0%
TCTTTGAGCTTGTAATATTG+AGG - chr4_3:42596504-42596523 None:intergenic 30.0%
TGAAACAAGCTAAAACTCTT+GGG - chr4_3:42596980-42596999 None:intergenic 30.0%
TGCATCTTTGATATAGAGAA+AGG - chr4_3:42597163-42597182 None:intergenic 30.0%
CTATATCAAAGATGCAATTG+AGG + chr4_3:42597167-42597186 Msa0641800:CDS 30.0%
AAATGGACACATCTTTAATG+TGG + chr4_3:42597299-42597318 Msa0641800:CDS 30.0%
AATGGACACATCTTTAATGT+GGG + chr4_3:42597300-42597319 Msa0641800:CDS 30.0%
GATTCTATCAAACTCATTGT+CGG + chr4_3:42597734-42597753 Msa0641800:intron 30.0%
CTGTTTATTCTTGTGAGTTT+AGG + chr4_3:42597805-42597824 Msa0641800:intron 30.0%
TTATTCTTGTGAGTTTAGGT+TGG + chr4_3:42597809-42597828 Msa0641800:intron 30.0%
TGTCTGATGTTGATATTGAA+GGG - chr4_3:42597872-42597891 None:intergenic 30.0%
ATGTCTGATGTTGATATTGA+AGG - chr4_3:42597873-42597892 None:intergenic 30.0%
! ATCAACTCTACAAGTTGAAT+TGG + chr4_3:42597936-42597955 Msa0641800:exon 30.0%
AGAAAGCAAGAGACAAATAA+GGG - chr4_3:42598137-42598156 None:intergenic 30.0%
AAGAAAGCAAGAGACAAATA+AGG - chr4_3:42598138-42598157 None:intergenic 30.0%
TTCAAGATGGTGATTGAAGA+AGG - chr4_3:42595434-42595453 None:intergenic 35.0%
! AAAGCTTTTTGTGTGTGTTG+TGG - chr4_3:42595544-42595563 None:intergenic 35.0%
ACACACACAAAAAGCTTTCA+TGG + chr4_3:42595546-42595565 Msa0641800:exon 35.0%
!! TATGGCTTTGTGAGAAGTTT+CGG - chr4_3:42595671-42595690 None:intergenic 35.0%
!! GAGATGATTGATTTTCTCAG+AGG - chr4_3:42595707-42595726 None:intergenic 35.0%
! AAGCTTTGACAAGAGTTTCA+AGG - chr4_3:42595798-42595817 None:intergenic 35.0%
TAATTTCATTGATGCGATCC+CGG + chr4_3:42596004-42596023 Msa0641800:CDS 35.0%
!! GATTCATTTTTCTACCTGTG+AGG + chr4_3:42596163-42596182 Msa0641800:CDS 35.0%
GTACAGCAAGAATCTCTTTA+TGG + chr4_3:42596233-42596252 Msa0641800:intron 35.0%
CGATATTGACACATGGATAA+TGG + chr4_3:42596299-42596318 Msa0641800:intron 35.0%
AACACAAATTTGCATCATGC+AGG + chr4_3:42596476-42596495 Msa0641800:intron 35.0%
TGAACTGGACCAAAAATACA+AGG - chr4_3:42596537-42596556 None:intergenic 35.0%
GGCTCATTTATGGTAAACAA+AGG + chr4_3:42596601-42596620 Msa0641800:intron 35.0%
CGTTAGATTGAAACCATGTA+AGG - chr4_3:42596765-42596784 None:intergenic 35.0%
AATCACAATCTATGTAGCAC+CGG - chr4_3:42596790-42596809 None:intergenic 35.0%
TAAATCTATAGCTGAGCATG+CGG + chr4_3:42596860-42596879 Msa0641800:intron 35.0%
CTATTGTGAGACCTTATAAC+TGG + chr4_3:42596901-42596920 Msa0641800:CDS 35.0%
CTGAAACAAGCTAAAACTCT+TGG - chr4_3:42596981-42597000 None:intergenic 35.0%
! GAAGCTTTGTGAAAAAACAG+TGG - chr4_3:42597076-42597095 None:intergenic 35.0%
GATATAGAGAAAGGTTCTCT+GGG - chr4_3:42597154-42597173 None:intergenic 35.0%
TGATATAGAGAAAGGTTCTC+TGG - chr4_3:42597155-42597174 None:intergenic 35.0%
TATGCTATCATGTAACATGC+AGG + chr4_3:42597260-42597279 Msa0641800:intron 35.0%
CATTAAGGTATATGCAAAGG+TGG + chr4_3:42597457-42597476 Msa0641800:intron 35.0%
! GTGAGTTCAGAAGTTTTCTA+TGG + chr4_3:42597515-42597534 Msa0641800:CDS 35.0%
! TCAGAAGTTTTCTATGGCAA+AGG + chr4_3:42597521-42597540 Msa0641800:CDS 35.0%
AAGGTTATGATGACAGTGAT+AGG + chr4_3:42597540-42597559 Msa0641800:CDS 35.0%
ACGTGAGTTTGAAGAAATCA+CGG + chr4_3:42597646-42597665 Msa0641800:intron 35.0%
AGTTCATCAAGAGATGTCTT+TGG - chr4_3:42597838-42597857 None:intergenic 35.0%
!! TGTAGAGTTGATCAAGTTGA+AGG - chr4_3:42597928-42597947 None:intergenic 35.0%
ATTTGTCAGATTGTCTCTCA+TGG - chr4_3:42598003-42598022 None:intergenic 35.0%
AGAGGAAGAGGAAAGAGAAA+AGG - chr4_3:42595493-42595512 None:intergenic 40.0%
CATATTGAGATCGGTGTGAT+TGG - chr4_3:42595595-42595614 None:intergenic 40.0%
CCGATCATGCATATTGAGAT+CGG - chr4_3:42595604-42595623 None:intergenic 40.0%
CCGATCTCAATATGCATGAT+CGG + chr4_3:42595601-42595620 Msa0641800:CDS 40.0%
ATCTCAATATGCATGATCGG+CGG + chr4_3:42595604-42595623 Msa0641800:CDS 40.0%
! AGTTTCGGACATCAGCTTTT+CGG - chr4_3:42595656-42595675 None:intergenic 40.0%
AGAGGAGACATCAATGACTA+TGG - chr4_3:42595689-42595708 None:intergenic 40.0%
TCCTTGATAAGTCTCATCCT+TGG + chr4_3:42595725-42595744 Msa0641800:CDS 40.0%
CCTTGATAAGTCTCATCCTT+GGG + chr4_3:42595726-42595745 Msa0641800:CDS 40.0%
! TTTTCTACCTGTGAGGTCTT+TGG + chr4_3:42596170-42596189 Msa0641800:CDS 40.0%
TTTCTACCTGTGAGGTCTTT+GGG + chr4_3:42596171-42596190 Msa0641800:CDS 40.0%
TGTACCTTTCTATACTCCTC+AGG - chr4_3:42596218-42596237 None:intergenic 40.0%
ATGGACACGATATTGACACA+TGG + chr4_3:42596292-42596311 Msa0641800:intron 40.0%
!! CATATTCGGTGTCATGATGT+TGG + chr4_3:42596358-42596377 Msa0641800:intron 40.0%
TGTTGGACACTTACATGTGT+CGG + chr4_3:42596375-42596394 Msa0641800:intron 40.0%
! GATGCGAGTCCTTGTATTTT+TGG + chr4_3:42596525-42596544 Msa0641800:CDS 40.0%
GTCCAGTTCATAAACAGAGA+TGG + chr4_3:42596547-42596566 Msa0641800:CDS 40.0%
GACCATCTCTGTTTATGAAC+TGG - chr4_3:42596552-42596571 None:intergenic 40.0%
ATGACAGACAGGCTCATTTA+TGG + chr4_3:42596591-42596610 Msa0641800:CDS 40.0%
ATGGTTTCAATCTAACGTGC+CGG + chr4_3:42596768-42596787 Msa0641800:intron 40.0%
GTGAGACCTTATAACTGGAT+TGG + chr4_3:42596906-42596925 Msa0641800:CDS 40.0%
CTTGGTCCAATCCAGTTATA+AGG - chr4_3:42596915-42596934 None:intergenic 40.0%
! TAACTGGATTGGACCAAGAA+TGG + chr4_3:42596917-42596936 Msa0641800:CDS 40.0%
CATGAACAAGAAACAGAAGC+AGG - chr4_3:42597021-42597040 None:intergenic 40.0%
GATAACCCTGATAGAGCAAA+TGG + chr4_3:42597282-42597301 Msa0641800:CDS 40.0%
TGTGTCCATTTGCTCTATCA+GGG - chr4_3:42597290-42597309 None:intergenic 40.0%
ATGTGTCCATTTGCTCTATC+AGG - chr4_3:42597291-42597310 None:intergenic 40.0%
!! ATCCAGAGTTGATAGACTAG+AGG - chr4_3:42597495-42597514 None:intergenic 40.0%
! TGGTGATGATTGTCATGTCA+GGG - chr4_3:42597571-42597590 None:intergenic 40.0%
GACATCTCTTGATGAACTGT+TGG + chr4_3:42597840-42597859 Msa0641800:CDS 40.0%
GCAAGAGACAAATAAGGGAA+GGG - chr4_3:42598132-42598151 None:intergenic 40.0%
AGCAAGAGACAAATAAGGGA+AGG - chr4_3:42598133-42598152 None:intergenic 40.0%
GAGAAAATGCAGAGAGGAAG+AGG - chr4_3:42595505-42595524 None:intergenic 45.0%
AGAGGAGAGAAAATGCAGAG+AGG - chr4_3:42595511-42595530 None:intergenic 45.0%
TTTCATGGATCGAGTGAACC+TGG + chr4_3:42595561-42595580 Msa0641800:exon 45.0%
CCCAAGGATGAGACTTATCA+AGG - chr4_3:42595729-42595748 None:intergenic 45.0%
! GAGGTCTTTGGGAAGACTAT+AGG + chr4_3:42596182-42596201 Msa0641800:CDS 45.0%
TATAGGTAGCTTTCTGCCTG+AGG + chr4_3:42596199-42596218 Msa0641800:CDS 45.0%
! TCTGCCTGAGGAGTATAGAA+AGG + chr4_3:42596211-42596230 Msa0641800:CDS 45.0%
!! TTGGTGTCAGACACCTTACA+TGG + chr4_3:42596749-42596768 Msa0641800:intron 45.0%
CCAGGAATGAAGTCCATTCT+TGG - chr4_3:42596933-42596952 None:intergenic 45.0%
! CCAAGAATGGACTTCATTCC+TGG + chr4_3:42596930-42596949 Msa0641800:CDS 45.0%
! AATGGACTTCATTCCTGGTG+TGG + chr4_3:42596935-42596954 Msa0641800:CDS 45.0%
CCACCATCAACAAGTTTGAG+CGG - chr4_3:42597126-42597145 None:intergenic 45.0%
GCTAGCTGAGCTGATGATAA+AGG + chr4_3:42597353-42597372 Msa0641800:CDS 45.0%
!! AGAGTTGATAGACTAGAGGC+AGG - chr4_3:42597491-42597510 None:intergenic 45.0%
TGCCTCTAGTCTATCAACTC+TGG + chr4_3:42597490-42597509 Msa0641800:CDS 45.0%
! CTGGTGATGATTGTCATGTC+AGG - chr4_3:42597572-42597591 None:intergenic 45.0%
CTGACATGACAATCATCACC+AGG + chr4_3:42597570-42597589 Msa0641800:CDS 45.0%
!! ATTATTCAAATAAATAAAAA+TGG - chr4_3:42595862-42595881 None:intergenic 5.0%
! GGAAAGAGAAAAGGCGTGTG+TGG - chr4_3:42595484-42595503 None:intergenic 50.0%
TGTTGTGGAGTGAGAGAGAG+AGG - chr4_3:42595529-42595548 None:intergenic 50.0%
ATGGATCGAGTGAACCTGGA+TGG + chr4_3:42595565-42595584 Msa0641800:CDS 50.0%
!! GTGTGATTGGCTTTCCATCC+AGG - chr4_3:42595582-42595601 None:intergenic 50.0%
TCAATATGCATGATCGGCGG+TGG + chr4_3:42595607-42595626 Msa0641800:CDS 50.0%
! AACTCGATACGGTTAGCCCA+AGG - chr4_3:42595745-42595764 None:intergenic 50.0%
GGATTATAACACGCGGCCTT+TGG + chr4_3:42595968-42595987 Msa0641800:CDS 50.0%
TTTCATTGATGCGATCCCGG+TGG + chr4_3:42596007-42596026 Msa0641800:CDS 50.0%
AGTCTTCCCAAAGACCTCAC+AGG - chr4_3:42596180-42596199 None:intergenic 50.0%
GTGCAAAGCAGATGACAGAC+AGG + chr4_3:42596580-42596599 Msa0641800:CDS 50.0%
ATAGCTGAGCATGCGGAGAA+TGG + chr4_3:42596867-42596886 Msa0641800:intron 50.0%
GACTTCATTCCTGGTGTGGA+TGG + chr4_3:42596939-42596958 Msa0641800:CDS 50.0%
CTCTTGGGACACCATCACTT+GGG - chr4_3:42596965-42596984 None:intergenic 50.0%
ACTCTTGGGACACCATCACT+TGG - chr4_3:42596966-42596985 None:intergenic 50.0%
!! GAGCCGCTCAAACTTGTTGA+TGG + chr4_3:42597120-42597139 Msa0641800:CDS 50.0%
!! CCGCTCAAACTTGTTGATGG+TGG + chr4_3:42597123-42597142 Msa0641800:CDS 50.0%
ACAATCATCACCAGGCAGCT+TGG + chr4_3:42597578-42597597 Msa0641800:CDS 50.0%
CGACAAAATACCAAGCTGCC+TGG - chr4_3:42597591-42597610 None:intergenic 50.0%
ATATGCATGATCGGCGGTGG+TGG + chr4_3:42595610-42595629 Msa0641800:CDS 55.0%
!! ATCGGCGGTGGTGGATTCAT+CGG + chr4_3:42595619-42595638 Msa0641800:CDS 55.0%
! CGGACATCAGCTTTTCGGTG+AGG - chr4_3:42595651-42595670 None:intergenic 55.0%
TGCTGCAATTTGCACGCCAG+CGG + chr4_3:42595947-42595966 Msa0641800:CDS 55.0%
!! CGCCAGCGGATTATAACACG+CGG + chr4_3:42595961-42595980 Msa0641800:CDS 55.0%
CAGCATGCAGCATGTGTGTC+TGG - chr4_3:42596675-42596694 None:intergenic 55.0%
TTGCTCCAGAATCTCCTGCG+TGG + chr4_3:42597096-42597115 Msa0641800:intron 55.0%
GGCCGCGTGTTATAATCCGC+TGG - chr4_3:42595966-42595985 None:intergenic 60.0%
TCACTTGGGCCATCCACACC+AGG - chr4_3:42596951-42596970 None:intergenic 60.0%
GGTGTGGATGGCCCAAGTGA+TGG + chr4_3:42596951-42596970 Msa0641800:CDS 60.0%
GCTCGCCACGCAGGAGATTC+TGG - chr4_3:42597104-42597123 None:intergenic 65.0%
GTTTGAGCGGCTCGCCACGC+AGG - chr4_3:42597113-42597132 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 42595431 42598177 42595431 ID=Msa0641800;Name=Msa0641800
chr4_3 mRNA 42595431 42598177 42595431 ID=Msa0641800-mRNA-1;Parent=Msa0641800;Name=Msa0641800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=134|1|1|1|1|1|9|241|381
chr4_3 exon 42595431 42595825 42595431 ID=Msa0641800-mRNA-1:exon:9647;Parent=Msa0641800-mRNA-1
chr4_3 exon 42595936 42596028 42595936 ID=Msa0641800-mRNA-1:exon:9648;Parent=Msa0641800-mRNA-1
chr4_3 exon 42596131 42596232 42596131 ID=Msa0641800-mRNA-1:exon:9649;Parent=Msa0641800-mRNA-1
chr4_3 exon 42596498 42596612 42596498 ID=Msa0641800-mRNA-1:exon:9650;Parent=Msa0641800-mRNA-1
chr4_3 exon 42596871 42597004 42596871 ID=Msa0641800-mRNA-1:exon:9651;Parent=Msa0641800-mRNA-1
chr4_3 exon 42597105 42597206 42597105 ID=Msa0641800-mRNA-1:exon:9652;Parent=Msa0641800-mRNA-1
chr4_3 exon 42597282 42597374 42597282 ID=Msa0641800-mRNA-1:exon:9653;Parent=Msa0641800-mRNA-1
chr4_3 exon 42597464 42597599 42597464 ID=Msa0641800-mRNA-1:exon:9654;Parent=Msa0641800-mRNA-1
chr4_3 exon 42597827 42598177 42597827 ID=Msa0641800-mRNA-1:exon:9655;Parent=Msa0641800-mRNA-1
chr4_3 five_prime_UTR 42595431 42595564 42595431 ID=Msa0641800-mRNA-1:five_prime_utr;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42595565 42595825 42595565 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42595936 42596028 42595936 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42596131 42596232 42596131 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42596498 42596612 42596498 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42596871 42597004 42596871 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42597105 42597206 42597105 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42597282 42597374 42597282 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42597464 42597599 42597464 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 CDS 42597827 42597936 42597827 ID=Msa0641800-mRNA-1:cds;Parent=Msa0641800-mRNA-1
chr4_3 three_prime_UTR 42597937 42598177 42597937 ID=Msa0641800-mRNA-1:three_prime_utr;Parent=Msa0641800-mRNA-1
Gene Sequence

>Msa0641800

ATGGATCGAGTGAACCTGGATGGAAAGCCAATCACACCGATCTCAATATGCATGATCGGCGGTGGTGGATTCATCGGATCACACCTCACCGAAAAGCTGATGTCCGAAACTTCTCACAAAGCCATAGTCATTGATGTCTCCTCTGAGAAAATCAATCATCTCCTTGATAAGTCTCATCCTTGGGCTAACCGTATCGAGTTTCATCAAATGAATATCAAGAACGATTCTCGCCTTGAAACTCTTGTCAAAGCTTCTGATCTCACTATTAATCTTGCTGCAATTTGCACGCCAGCGGATTATAACACGCGGCCTTTGGATACTATTTACAGTAATTTCATTGATGCGATCCCGGTGATTAAATTTTGCACGGAGAACAATAAGCGTTTGATTCATTTTTCTACCTGTGAGGTCTTTGGGAAGACTATAGGTAGCTTTCTGCCTGAGGAGTATAGAAAGGAACCTCAATATTACAAGCTCAAAGAAGATGCGAGTCCTTGTATTTTTGGTCCAGTTCATAAACAGAGATGGTCTTATGCATGTGCAAAGCAGATGACAGACAGGCTCATTTATGCTGAGCATGCGGAGAATGGACTCAAGTTCACTATTGTGAGACCTTATAACTGGATTGGACCAAGAATGGACTTCATTCCTGGTGTGGATGGCCCAAGTGATGGTGTCCCAAGAGTTTTAGCTTGTTTCAGTAATAATCTCCTGCGTGGCGAGCCGCTCAAACTTGTTGATGGTGGACATTCCCAGAGAACCTTTCTCTATATCAAAGATGCAATTGAGGCTGTTTTGTTAATGATTGATAACCCTGATAGAGCAAATGGACACATCTTTAATGTGGGAAACCCAGATAATGAAGTATCTGTTAAGCAGCTAGCTGAGCTGATGATAAAGGTATATGCAAAGGTGGCTAGTGTACCTGCCTCTAGTCTATCAACTCTGGATGTGAGTTCAGAAGTTTTCTATGGCAAAGGTTATGATGACAGTGATAGGCGTATCCCTGACATGACAATCATCACCAGGCAGCTTGGTTGGAAGCCAAAGACATCTCTTGATGAACTGTTGGATTCTACCCTTCAATATCAACATCAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCTTCAACTTGA

Protein sequence

>Msa0641800

MDRVNLDGKPITPISICMIGGGGFIGSHLTEKLMSETSHKAIVIDVSSEKINHLLDKSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKEPQYYKLKEDASPCIFGPVHKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSDGVPRVLACFSNNLLRGEPLKLVDGGHSQRTFLYIKDAIEAVLLMIDNPDRANGHIFNVGNPDNEVSVKQLAELMIKVYAKVASVPASSLSTLDVSSEVFYGKGYDDSDRRIPDMTIITRQLGWKPKTSLDELLDSTLQYQHQTYSHAIKKELSKPST*