Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237960 | XP_024631582.1 | 84.375 | 192 | 17 | 2 | 1 | 192 | 1 | 179 | 3.28e-97 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237960 | A2Q247 | 84.375 | 192 | 17 | 2 | 1 | 192 | 1 | 179 | 1.57e-97 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0237960 | 0.802416 | 5.668314e-49 | -8.615850e-47 |
| Msa0008090 | Msa0237960 | 0.802920 | 4.461715e-49 | -8.615850e-47 |
| Msa0020390 | Msa0237960 | 0.831246 | 1.860842e-55 | -8.615850e-47 |
| Msa0026150 | Msa0237960 | 0.806100 | 9.693468e-50 | -8.615850e-47 |
| Msa0029260 | Msa0237960 | 0.820763 | 5.777441e-53 | -8.615850e-47 |
| Msa0033880 | Msa0237960 | 0.818614 | 1.787770e-52 | -8.615850e-47 |
| Msa0043980 | Msa0237960 | 0.803240 | 3.831209e-49 | -8.615850e-47 |
| Msa0048180 | Msa0237960 | 0.809426 | 1.903066e-50 | -8.615850e-47 |
| Msa0059040 | Msa0237960 | 0.821665 | 3.578292e-53 | -8.615850e-47 |
| Msa0059110 | Msa0237960 | 0.820776 | 5.737134e-53 | -8.615850e-47 |
| Msa0071250 | Msa0237960 | 0.804841 | 1.779943e-49 | -8.615850e-47 |
| Msa0081650 | Msa0237960 | 0.824287 | 8.757228e-54 | -8.615850e-47 |
| Msa0089820 | Msa0237960 | 0.802449 | 5.580071e-49 | -8.615850e-47 |
| Msa0090520 | Msa0237960 | 0.822204 | 2.683713e-53 | -8.615850e-47 |
| Msa0090550 | Msa0237960 | 0.812822 | 3.494761e-51 | -8.615850e-47 |
| Msa0097590 | Msa0237960 | 0.800241 | 1.580795e-48 | -8.615850e-47 |
| Msa0097610 | Msa0237960 | 0.806477 | 8.069778e-50 | -8.615850e-47 |
| Msa0106620 | Msa0237960 | 0.808373 | 3.196958e-50 | -8.615850e-47 |
| Msa0106710 | Msa0237960 | 0.825774 | 3.901390e-54 | -8.615850e-47 |
| Msa0127850 | Msa0237960 | 0.823333 | 1.465880e-53 | -8.615850e-47 |
| Msa0137990 | Msa0237960 | 0.820629 | 6.199035e-53 | -8.615850e-47 |
| Msa0138020 | Msa0237960 | 0.804354 | 2.248915e-49 | -8.615850e-47 |
| Msa0159420 | Msa0237960 | 0.821045 | 4.973596e-53 | -8.615850e-47 |
| Msa0167980 | Msa0237960 | 0.842819 | 2.048684e-58 | -8.615850e-47 |
| Msa0169300 | Msa0237960 | 0.817881 | 2.619599e-52 | -8.615850e-47 |
| Msa0173800 | Msa0237960 | 0.806112 | 9.636037e-50 | -8.615850e-47 |
| Msa0174000 | Msa0237960 | 0.804439 | 2.159015e-49 | -8.615850e-47 |
| Msa0183850 | Msa0237960 | 0.804747 | 1.862113e-49 | -8.615850e-47 |
| Msa0183870 | Msa0237960 | 0.810001 | 1.431675e-50 | -8.615850e-47 |
| Msa0183900 | Msa0237960 | 0.814466 | 1.518566e-51 | -8.615850e-47 |
| Msa0188350 | Msa0237960 | 0.812353 | 4.424149e-51 | -8.615850e-47 |
| Msa0189520 | Msa0237960 | 0.805044 | 1.614091e-49 | -8.615850e-47 |
| Msa0202410 | Msa0237960 | 0.801556 | 8.516471e-49 | -8.615850e-47 |
| Msa0204960 | Msa0237960 | 0.826131 | 3.209177e-54 | -8.615850e-47 |
| Msa0206690 | Msa0237960 | 0.810242 | 1.270537e-50 | -8.615850e-47 |
| Msa0207700 | Msa0237960 | 0.800383 | 1.478664e-48 | -8.615850e-47 |
| Msa0209080 | Msa0237960 | 0.806281 | 8.876134e-50 | -8.615850e-47 |
| Msa0209500 | Msa0237960 | 0.821777 | 3.370929e-53 | -8.615850e-47 |
| Msa0223330 | Msa0237960 | 0.838742 | 2.399821e-57 | -8.615850e-47 |
| Msa0223340 | Msa0237960 | 0.822292 | 2.560775e-53 | -8.615850e-47 |
| Msa0229380 | Msa0237960 | 0.804293 | 2.315698e-49 | -8.615850e-47 |
| Msa0231100 | Msa0237960 | 0.809430 | 1.900107e-50 | -8.615850e-47 |
| Msa0233370 | Msa0237960 | 0.825291 | 5.077601e-54 | -8.615850e-47 |
| Msa0237960 | Msa0244980 | 0.809848 | 1.544971e-50 | -8.615850e-47 |
| Msa0237960 | Msa0245430 | 0.810649 | 1.037586e-50 | -8.615850e-47 |
| Msa0237960 | Msa0249580 | 0.836086 | 1.149999e-56 | -8.615850e-47 |
| Msa0237960 | Msa0257490 | 0.841141 | 5.687974e-58 | -8.615850e-47 |
| Msa0237960 | Msa0259210 | 0.810719 | 1.002351e-50 | -8.615850e-47 |
| Msa0237960 | Msa0269470 | 0.801378 | 9.263617e-49 | -8.615850e-47 |
| Msa0237960 | Msa0270380 | 0.803188 | 3.926670e-49 | -8.615850e-47 |
| Msa0237960 | Msa0271360 | 0.808789 | 2.605567e-50 | -8.615850e-47 |
| Msa0237960 | Msa0275360 | 0.876887 | 9.762679e-69 | -8.615850e-47 |
| Msa0237960 | Msa0281530 | 0.840449 | 8.637978e-58 | -8.615850e-47 |
| Msa0237960 | Msa0283420 | 0.818513 | 1.884977e-52 | -8.615850e-47 |
| Msa0237960 | Msa0288080 | 0.814079 | 1.849636e-51 | -8.615850e-47 |
| Msa0237960 | Msa0296790 | 0.840266 | 9.645255e-58 | -8.615850e-47 |
| Msa0237960 | Msa0296920 | 0.813670 | 2.275962e-51 | -8.615850e-47 |
| Msa0237960 | Msa0311720 | 0.839414 | 1.607828e-57 | -8.615850e-47 |
| Msa0237960 | Msa0317960 | 0.801683 | 8.022267e-49 | -8.615850e-47 |
| Msa0237960 | Msa0317970 | 0.825529 | 4.459680e-54 | -8.615850e-47 |
| Msa0237960 | Msa0320590 | 0.829081 | 6.282772e-55 | -8.615850e-47 |
| Msa0237960 | Msa0321690 | 0.817995 | 2.468784e-52 | -8.615850e-47 |
| Msa0237960 | Msa0322240 | 0.811153 | 8.073916e-51 | -8.615850e-47 |
| Msa0237960 | Msa0326480 | 0.830949 | 2.201024e-55 | -8.615850e-47 |
| Msa0237960 | Msa0339910 | 0.820397 | 7.008327e-53 | -8.615850e-47 |
| Msa0237960 | Msa0357900 | 0.832245 | 1.055018e-55 | -8.615850e-47 |
| Msa0237960 | Msa0365100 | 0.800860 | 1.182029e-48 | -8.615850e-47 |
| Msa0237960 | Msa0378970 | 0.811469 | 6.894004e-51 | -8.615850e-47 |
| Msa0237960 | Msa0382370 | 0.823173 | 1.597000e-53 | -8.615850e-47 |
| Msa0237960 | Msa0385500 | 0.825720 | 4.019924e-54 | -8.615850e-47 |
| Msa0237960 | Msa0388700 | 0.807603 | 4.662287e-50 | -8.615850e-47 |
| Msa0237960 | Msa0410870 | 0.803370 | 3.600307e-49 | -8.615850e-47 |
| Msa0237960 | Msa0419720 | 0.813474 | 2.513157e-51 | -8.615850e-47 |
| Msa0237960 | Msa0432160 | 0.811566 | 6.565385e-51 | -8.615850e-47 |
| Msa0237960 | Msa0450400 | -0.843459 | 1.382925e-58 | -8.615850e-47 |
| Msa0237960 | Msa0476680 | 0.814598 | 1.419900e-51 | -8.615850e-47 |
| Msa0237960 | Msa0481970 | 0.829474 | 5.043909e-55 | -8.615850e-47 |
| Msa0237960 | Msa0491000 | 0.808997 | 2.351689e-50 | -8.615850e-47 |
| Msa0237960 | Msa0511770 | 0.814013 | 1.911828e-51 | -8.615850e-47 |
| Msa0237960 | Msa0517640 | 0.803752 | 2.999929e-49 | -8.615850e-47 |
| Msa0237960 | Msa0518170 | 0.800841 | 1.192986e-48 | -8.615850e-47 |
| Msa0237960 | Msa0521010 | 0.818148 | 2.279723e-52 | -8.615850e-47 |
| Msa0237960 | Msa0524500 | 0.807140 | 5.846830e-50 | -8.615850e-47 |
| Msa0237960 | Msa0527020 | 0.801332 | 9.466625e-49 | -8.615850e-47 |
| Msa0237960 | Msa0531250 | 0.816334 | 5.832930e-52 | -8.615850e-47 |
| Msa0237960 | Msa0532980 | 0.806254 | 8.996250e-50 | -8.615850e-47 |
| Msa0237960 | Msa0542290 | 0.842441 | 2.581005e-58 | -8.615850e-47 |
| Msa0237960 | Msa0547160 | 0.811605 | 6.438315e-51 | -8.615850e-47 |
| Msa0237960 | Msa0556060 | 0.820756 | 5.796733e-53 | -8.615850e-47 |
| Msa0237960 | Msa0560500 | 0.811569 | 6.557113e-51 | -8.615850e-47 |
| Msa0237960 | Msa0572840 | 0.814653 | 1.380955e-51 | -8.615850e-47 |
| Msa0237960 | Msa0581110 | 0.811044 | 8.522425e-51 | -8.615850e-47 |
| Msa0237960 | Msa0581280 | 0.821949 | 3.076174e-53 | -8.615850e-47 |
| Msa0237960 | Msa0585560 | 0.801967 | 7.014194e-49 | -8.615850e-47 |
| Msa0237960 | Msa0588090 | 0.804400 | 2.199853e-49 | -8.615850e-47 |
| Msa0237960 | Msa0588260 | 0.800135 | 1.660987e-48 | -8.615850e-47 |
| Msa0237960 | Msa0600450 | 0.801533 | 8.610663e-49 | -8.615850e-47 |
| Msa0237960 | Msa0609410 | -0.805577 | 1.248135e-49 | -8.615850e-47 |
| Msa0237960 | Msa0610130 | 0.801325 | 9.496821e-49 | -8.615850e-47 |
| Msa0237960 | Msa0610180 | 0.805720 | 1.164686e-49 | -8.615850e-47 |
| Msa0237960 | Msa0615580 | 0.805578 | 1.247756e-49 | -8.615850e-47 |
| Msa0237960 | Msa0618950 | 0.820494 | 6.660491e-53 | -8.615850e-47 |
| Msa0237960 | Msa0618970 | 0.811706 | 6.123442e-51 | -8.615850e-47 |
| Msa0237960 | Msa0628420 | 0.816922 | 4.307312e-52 | -8.615850e-47 |
| Msa0237960 | Msa0631350 | 0.800367 | 1.489796e-48 | -8.615850e-47 |
| Msa0237960 | Msa0642970 | 0.809060 | 2.280503e-50 | -8.615850e-47 |
| Msa0237960 | Msa0662630 | 0.809475 | 1.858108e-50 | -8.615850e-47 |
| Msa0237960 | Msa0663390 | 0.804406 | 2.193215e-49 | -8.615850e-47 |
| Msa0237960 | Msa0666230 | 0.807756 | 4.326462e-50 | -8.615850e-47 |
| Msa0237960 | Msa0672550 | 0.815583 | 8.584537e-52 | -8.615850e-47 |
| Msa0237960 | Msa0679360 | 0.807643 | 4.571739e-50 | -8.615850e-47 |
| Msa0237960 | Msa0682680 | 0.803787 | 2.950309e-49 | -8.615850e-47 |
| Msa0237960 | Msa0689500 | 0.803282 | 3.756043e-49 | -8.615850e-47 |
| Msa0237960 | Msa0694990 | 0.801894 | 7.258683e-49 | -8.615850e-47 |
| Msa0237960 | Msa0697720 | 0.821491 | 3.926318e-53 | -8.615850e-47 |
| Msa0237960 | Msa0698540 | 0.825143 | 5.503652e-54 | -8.615850e-47 |
| Msa0237960 | Msa0703910 | 0.811218 | 7.813999e-51 | -8.615850e-47 |
| Msa0237960 | Msa0705390 | 0.829547 | 4.843641e-55 | -8.615850e-47 |
| Msa0237960 | Msa0707250 | 0.829506 | 4.955181e-55 | -8.615850e-47 |
| Msa0237960 | Msa0722020 | 0.822141 | 2.776660e-53 | -8.615850e-47 |
| Msa0237960 | Msa0733480 | 0.806568 | 7.722255e-50 | -8.615850e-47 |
| Msa0237960 | Msa0738440 | 0.828637 | 8.049466e-55 | -8.615850e-47 |
| Msa0237960 | Msa0741440 | 0.801304 | 9.591102e-49 | -8.615850e-47 |
| Msa0237960 | Msa0752700 | 0.826312 | 2.907591e-54 | -8.615850e-47 |
| Msa0237960 | Msa0794970 | 0.829202 | 5.872607e-55 | -8.615850e-47 |
| Msa0237960 | Msa0800370 | 0.838952 | 2.118015e-57 | -8.615850e-47 |
| Msa0237960 | Msa0817650 | 0.807592 | 4.688640e-50 | -8.615850e-47 |
| Msa0237960 | Msa0822500 | 0.819510 | 1.118013e-52 | -8.615850e-47 |
| Msa0237960 | Msa0826150 | 0.802549 | 5.321888e-49 | -8.615850e-47 |
| Msa0237960 | Msa0831100 | 0.843991 | 9.967184e-59 | -8.615850e-47 |
| Msa0237960 | Msa0833190 | -0.819324 | 1.232952e-52 | -8.615850e-47 |
| Msa0237960 | Msa0890550 | 0.820674 | 6.054011e-53 | -8.615850e-47 |
| Msa0237960 | Msa0892640 | 0.824547 | 7.609034e-54 | -8.615850e-47 |
| Msa0237960 | Msa0918390 | 0.817081 | 3.966543e-52 | -8.615850e-47 |
| Msa0237960 | Msa0944200 | 0.834389 | 3.083026e-56 | -8.615850e-47 |
| Msa0237960 | Msa0944660 | 0.800465 | 1.422959e-48 | -8.615850e-47 |
| Msa0237960 | Msa0974950 | 0.809737 | 1.632149e-50 | -8.615850e-47 |
| Msa0237960 | Msa0980540 | 0.810057 | 1.392862e-50 | -8.615850e-47 |
| Msa0237960 | Msa0994370 | 0.813995 | 1.929607e-51 | -8.615850e-47 |
| Msa0237960 | Msa1006840 | 0.806783 | 6.957482e-50 | -8.615850e-47 |
| Msa0237960 | Msa1027250 | 0.806945 | 6.428398e-50 | -8.615850e-47 |
| Msa0237960 | Msa1027300 | 0.813463 | 2.527810e-51 | -8.615850e-47 |
| Msa0237960 | Msa1027360 | 0.801307 | 9.576876e-49 | -8.615850e-47 |
| Msa0237960 | Msa1029070 | 0.815313 | 9.855765e-52 | -8.615850e-47 |
| Msa0237960 | Msa1041850 | 0.821842 | 3.256410e-53 | -8.615850e-47 |
| Msa0237960 | Msa1051210 | 0.809641 | 1.711871e-50 | -8.615850e-47 |
| Msa0237960 | Msa1072900 | 0.800004 | 1.766541e-48 | -8.615850e-47 |
| Msa0237960 | Msa1077030 | 0.806626 | 7.507903e-50 | -8.615850e-47 |
| Msa0237960 | Msa1078420 | 0.807032 | 6.161290e-50 | -8.615850e-47 |
| Msa0237960 | Msa1089320 | 0.834254 | 3.332659e-56 | -8.615850e-47 |
| Msa0237960 | Msa1089450 | 0.811490 | 6.820556e-51 | -8.615850e-47 |
| Msa0237960 | Msa1091940 | 0.812399 | 4.324471e-51 | -8.615850e-47 |
| Msa0237960 | Msa1104560 | 0.800754 | 1.242728e-48 | -8.615850e-47 |
| Msa0237960 | Msa1126830 | 0.809712 | 1.652630e-50 | -8.615850e-47 |
| Msa0237960 | Msa1127590 | 0.807810 | 4.213289e-50 | -8.615850e-47 |
| Msa0237960 | Msa1156160 | 0.808458 | 3.066190e-50 | -8.615850e-47 |
| Msa0237960 | Msa1160590 | 0.809227 | 2.099859e-50 | -8.615850e-47 |
| Msa0237960 | Msa1165780 | 0.824512 | 7.753244e-54 | -8.615850e-47 |
| Msa0237960 | Msa1169530 | 0.811747 | 5.998279e-51 | -8.615850e-47 |
| Msa0237960 | Msa1178060 | 0.809539 | 1.799917e-50 | -8.615850e-47 |
| Msa0237960 | Msa1202580 | 0.821605 | 3.694347e-53 | -8.615850e-47 |
| Msa0237960 | Msa1204530 | 0.800241 | 1.580678e-48 | -8.615850e-47 |
| Msa0237960 | Msa1206650 | 0.807482 | 4.946571e-50 | -8.615850e-47 |
| Msa0237960 | Msa1209200 | 0.815927 | 7.192103e-52 | -8.615850e-47 |
| Msa0237960 | Msa1209440 | 0.804062 | 2.587216e-49 | -8.615850e-47 |
| Msa0237960 | Msa1210020 | 0.804802 | 1.813211e-49 | -8.615850e-47 |
| Msa0237960 | Msa1212950 | 0.816217 | 6.195577e-52 | -8.615850e-47 |
| Msa0237960 | Msa1233850 | 0.804714 | 1.891662e-49 | -8.615850e-47 |
| Msa0237960 | Msa1254730 | 0.840836 | 6.840265e-58 | -8.615850e-47 |
| Msa0237960 | Msa1262720 | 0.805943 | 1.045616e-49 | -8.615850e-47 |
| Msa0237960 | Msa1262890 | 0.802706 | 4.939900e-49 | -8.615850e-47 |
| Msa0237960 | Msa1265590 | 0.832366 | 9.847495e-56 | -8.615850e-47 |
| Msa0237960 | Msa1265630 | 0.802175 | 6.354629e-49 | -8.615850e-47 |
| Msa0237960 | Msa1271130 | 0.818526 | 1.872008e-52 | -8.615850e-47 |
| Msa0237960 | Msa1294820 | 0.816083 | 6.639082e-52 | -8.615850e-47 |
| Msa0237960 | Msa1296830 | 0.809636 | 1.715609e-50 | -8.615850e-47 |
| Msa0237960 | Msa1302380 | 0.807341 | 5.300921e-50 | -8.615850e-47 |
| Msa0237960 | Msa1307180 | 0.818420 | 1.978934e-52 | -8.615850e-47 |
| Msa0237960 | Msa1313320 | 0.800845 | 1.190313e-48 | -8.615850e-47 |
| Msa0237960 | Msa1316360 | 0.822425 | 2.385149e-53 | -8.615850e-47 |
| Msa0237960 | Msa1332590 | 0.834115 | 3.612291e-56 | -8.615850e-47 |
| Msa0237960 | Msa1336560 | 0.840979 | 6.272900e-58 | -8.615850e-47 |
| Msa0237960 | Msa1346840 | 0.800371 | 1.487423e-48 | -8.615850e-47 |
| Msa0237960 | Msa1351540 | 0.845843 | 3.154147e-59 | -8.615850e-47 |
| Msa0237960 | Msa1360140 | 0.801137 | 1.037648e-48 | -8.615850e-47 |
| Msa0237960 | Msa1364210 | 0.836238 | 1.052281e-56 | -8.615850e-47 |
| Msa0237960 | Msa1367590 | 0.807068 | 6.055073e-50 | -8.615850e-47 |
| Msa0237960 | Msa1376650 | 0.814953 | 1.184919e-51 | -8.615850e-47 |
| Msa0237960 | Msa1389850 | 0.824079 | 9.801570e-54 | -8.615850e-47 |
| Msa0237960 | Msa1389880 | 0.812652 | 3.806113e-51 | -8.615850e-47 |
| Msa0237960 | Msa1393570 | 0.805883 | 1.076752e-49 | -8.615850e-47 |
| Msa0237960 | Msa1407190 | 0.818031 | 2.423561e-52 | -8.615850e-47 |
| Msa0237960 | Msa1411950 | 0.813980 | 1.944902e-51 | -8.615850e-47 |
| Msa0237960 | Msa1416370 | 0.815087 | 1.106291e-51 | -8.615850e-47 |
| Msa0237960 | Msa1419870 | 0.821312 | 4.316927e-53 | -8.615850e-47 |
| Msa0237960 | Msa1432130 | 0.808051 | 3.744933e-50 | -8.615850e-47 |
| Msa0237960 | Msa1434420 | -0.809072 | 2.266383e-50 | -8.615850e-47 |
| Msa0237960 | Msa1437270 | 0.822242 | 2.630653e-53 | -8.615850e-47 |
| Msa0237960 | Msa1447890 | 0.807960 | 3.916323e-50 | -8.615850e-47 |
| Msa0237960 | Msa1450720 | 0.817160 | 3.809460e-52 | -8.615850e-47 |
| Msa0237960 | Msa1454680 | 0.861148 | 1.257361e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237960 | MtrunA17_Chr2g0287391 | 84.375 | 192 | 17 | 2 | 1 | 192 | 1 | 179 | 3.02e-101 | 290 |
| Msa0237960 | MtrunA17_Chr2g0286581 | 49.215 | 191 | 85 | 5 | 3 | 193 | 13 | 191 | 7.12e-45 | 147 |
| Msa0237960 | MtrunA17_Chr2g0287311 | 44.286 | 210 | 92 | 5 | 1 | 193 | 11 | 212 | 4.10e-37 | 128 |
| Msa0237960 | MtrunA17_Chr2g0287401 | 43.005 | 193 | 77 | 4 | 1 | 193 | 1 | 160 | 1.31e-33 | 117 |
| Msa0237960 | MtrunA17_Chr2g0287351 | 57.609 | 92 | 36 | 1 | 3 | 94 | 2 | 90 | 9.15e-27 | 102 |
| Msa0237960 | MtrunA17_Chr4g0019961 | 38.095 | 189 | 107 | 3 | 4 | 192 | 3 | 181 | 8.69e-24 | 93.2 |
| Msa0237960 | MtrunA17_Chr2g0287321 | 36.410 | 195 | 83 | 6 | 4 | 193 | 13 | 171 | 1.37e-23 | 92.0 |
| Msa0237960 | MtrunA17_Chr2g0287331 | 54.545 | 77 | 32 | 1 | 7 | 83 | 3 | 76 | 1.65e-20 | 82.4 |
| Msa0237960 | MtrunA17_Chr1g0156951 | 31.381 | 239 | 97 | 7 | 3 | 191 | 2 | 223 | 6.85e-20 | 83.6 |
| Msa0237960 | MtrunA17_Chr2g0287301 | 35.870 | 184 | 78 | 5 | 3 | 186 | 13 | 156 | 1.29e-19 | 81.3 |
| Msa0237960 | MtrunA17_Chr2g0287421 | 53.247 | 77 | 33 | 1 | 1 | 77 | 1 | 74 | 2.17e-18 | 78.6 |
| Msa0237960 | MtrunA17_Chr2g0287371 | 50.633 | 79 | 36 | 1 | 1 | 79 | 4 | 79 | 2.04e-17 | 77.4 |
| Msa0237960 | MtrunA17_Chr1g0170131 | 49.367 | 79 | 33 | 1 | 3 | 81 | 2 | 73 | 2.19e-16 | 74.3 |
| Msa0237960 | MtrunA17_Chr5g0420551 | 26.222 | 225 | 115 | 5 | 16 | 193 | 8 | 228 | 1.53e-14 | 69.7 |
| Msa0237960 | MtrunA17_Chr2g0288061 | 33.880 | 183 | 110 | 3 | 12 | 189 | 11 | 187 | 1.75e-14 | 68.6 |
| Msa0237960 | MtrunA17_Chr2g0287341 | 60.714 | 56 | 17 | 2 | 1 | 56 | 1 | 51 | 1.14e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGCTTCTTAAGGAATTT+AGG | 0.194647 | 2_2:+11207940 | None:intergenic |
| TTCTGACGTGGATAATCTTT+TGG | 0.310646 | 2_2:-11207656 | Msa0237960:CDS |
| CACGGACACGGTGGTTCTTC+CGG | 0.314955 | 2_2:-11208058 | Msa0237960:CDS |
| ATCCTCCAGTGCTTGGGATT+GGG | 0.342543 | 2_2:+11207579 | None:intergenic |
| TATCCTCCAGTGCTTGGGAT+TGG | 0.354112 | 2_2:+11207578 | None:intergenic |
| CGAATTGAAACGGGTGTTGA+TGG | 0.362790 | 2_2:-11207686 | Msa0237960:CDS |
| AGATCTAACCTCCAAGGCTT+TGG | 0.383571 | 2_2:-11207893 | Msa0237960:CDS |
| ATTTCGATTATCAGTTCTTC+CGG | 0.390404 | 2_2:+11208039 | None:intergenic |
| CATTATATCCTCCAGTGCTT+GGG | 0.417270 | 2_2:+11207573 | None:intergenic |
| TCATTATATCCTCCAGTGCT+TGG | 0.419753 | 2_2:+11207572 | None:intergenic |
| AGAACCACCGTGTCCGTGTT+TGG | 0.425629 | 2_2:+11208063 | None:intergenic |
| GAATTCCATCGTTTGCAAAC+GGG | 0.440834 | 2_2:+11207976 | None:intergenic |
| TTCTTCCTCCTCTTGAGGCA+TGG | 0.443136 | 2_2:+11207825 | None:intergenic |
| CGAATTCCATCGTTTGCAAA+CGG | 0.446779 | 2_2:+11207975 | None:intergenic |
| TCATTTCCAGAGTTGATTCA+AGG | 0.453871 | 2_2:-11208017 | Msa0237960:CDS |
| AGCTCTGAAAGTGCTTCTTA+AGG | 0.482555 | 2_2:+11207932 | None:intergenic |
| AGCAATGACGGCGGAAGCAA+CGG | 0.488849 | 2_2:-11208094 | None:intergenic |
| GCACTTTCAGAGCTTGTTCA+CGG | 0.493716 | 2_2:-11207923 | Msa0237960:CDS |
| GGACTGTTCCAAAGCCTTGG+AGG | 0.494324 | 2_2:+11207885 | None:intergenic |
| TCTTCTTCTTCCTCCTCTTG+AGG | 0.507183 | 2_2:+11207820 | None:intergenic |
| ATTGGACTGTTCCAAAGCCT+TGG | 0.508501 | 2_2:+11207882 | None:intergenic |
| AGTATTCCTTGAATCAACTC+TGG | 0.529325 | 2_2:+11208011 | None:intergenic |
| GCAAACCCAATCCCAAGCAC+TGG | 0.551500 | 2_2:-11207584 | Msa0237960:CDS |
| CGCGGCCATGCCTCAAGAGG+AGG | 0.572319 | 2_2:-11207830 | Msa0237960:CDS |
| CAAGGAATACTCTGCAACTG+AGG | 0.574910 | 2_2:-11207999 | Msa0237960:CDS |
| AACCCAATCCCAAGCACTGG+AGG | 0.597028 | 2_2:-11207581 | Msa0237960:CDS |
| AACGGCGGAGTCACCAAACA+CGG | 0.597428 | 2_2:-11208076 | Msa0237960:CDS |
| TGAGGCCCGTTTGCAAACGA+TGG | 0.616269 | 2_2:-11207981 | Msa0237960:CDS |
| TAACGCGGCCATGCCTCAAG+AGG | 0.620807 | 2_2:-11207833 | Msa0237960:CDS |
| ATGTTGCGATATGAAAGCAT+TGG | 0.637121 | 2_2:+11207864 | None:intergenic |
| AATGACGGCGGAAGCAACGG+CGG | 0.640542 | 2_2:-11208091 | Msa0237960:CDS |
| CATCAAAGATCTAACCTCCA+AGG | 0.641038 | 2_2:-11207899 | Msa0237960:CDS |
| GGAGTCACCAAACACGGACA+CGG | 0.649843 | 2_2:-11208070 | Msa0237960:CDS |
| GATGGATTTAGTTTCTGACG+TGG | 0.707895 | 2_2:-11207668 | Msa0237960:CDS |
| GTCACCAAACACGGACACGG+TGG | 0.741586 | 2_2:-11208067 | Msa0237960:CDS |
| CTTAACGAGAGCAATGACGG+CGG | 0.742276 | 2_2:-11208103 | None:intergenic |
| ATTGGGTTTGCATATCAACG+TGG | 0.746293 | 2_2:+11207596 | None:intergenic |
| GCAACATATTATAAATAACG+CGG | 0.768241 | 2_2:-11207848 | Msa0237960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GCAACATATTATAAATAACG+CGG | - | chr2_2:11207773-11207792 | Msa0237960:CDS | 25.0% |
| ! | AAGAAAAAGACGAATTGAAA+CGG | - | chr2_2:11207925-11207944 | Msa0237960:CDS | 25.0% |
| !! | ATAATCTTTTGGTGAATCTT+CGG | - | chr2_2:11207976-11207995 | Msa0237960:CDS | 25.0% |
| ATTTCGATTATCAGTTCTTC+CGG | + | chr2_2:11207585-11207604 | None:intergenic | 30.0% | |
| AAGTGCTTCTTAAGGAATTT+AGG | + | chr2_2:11207684-11207703 | None:intergenic | 30.0% | |
| AGAAAAAGACGAATTGAAAC+GGG | - | chr2_2:11207926-11207945 | Msa0237960:CDS | 30.0% | |
| ! | TCATTTCCAGAGTTGATTCA+AGG | - | chr2_2:11207604-11207623 | Msa0237960:CDS | 35.0% |
| AGTATTCCTTGAATCAACTC+TGG | + | chr2_2:11207613-11207632 | None:intergenic | 35.0% | |
| ! | ATGTTGCGATATGAAAGCAT+TGG | + | chr2_2:11207760-11207779 | None:intergenic | 35.0% |
| ! | TTCTGACGTGGATAATCTTT+TGG | - | chr2_2:11207965-11207984 | Msa0237960:CDS | 35.0% |
| !! | AGTGTTTTCGAAGCTTTGTA+CGG | - | chr2_2:11208072-11208091 | Msa0237960:CDS | 35.0% |
| GAATTCCATCGTTTGCAAAC+GGG | + | chr2_2:11207648-11207667 | None:intergenic | 40.0% | |
| CGAATTCCATCGTTTGCAAA+CGG | + | chr2_2:11207649-11207668 | None:intergenic | 40.0% | |
| !! | AGCTCTGAAAGTGCTTCTTA+AGG | + | chr2_2:11207692-11207711 | None:intergenic | 40.0% |
| CATCAAAGATCTAACCTCCA+AGG | - | chr2_2:11207722-11207741 | Msa0237960:CDS | 40.0% | |
| ! | GATGGATTTAGTTTCTGACG+TGG | - | chr2_2:11207953-11207972 | Msa0237960:CDS | 40.0% |
| ATTGGGTTTGCATATCAACG+TGG | + | chr2_2:11208028-11208047 | None:intergenic | 40.0% | |
| CATTATATCCTCCAGTGCTT+GGG | + | chr2_2:11208051-11208070 | None:intergenic | 40.0% | |
| TCATTATATCCTCCAGTGCT+TGG | + | chr2_2:11208052-11208071 | None:intergenic | 40.0% | |
| CAAGGAATACTCTGCAACTG+AGG | - | chr2_2:11207622-11207641 | Msa0237960:CDS | 45.0% | |
| ! | GCACTTTCAGAGCTTGTTCA+CGG | - | chr2_2:11207698-11207717 | Msa0237960:CDS | 45.0% |
| AGATCTAACCTCCAAGGCTT+TGG | - | chr2_2:11207728-11207747 | Msa0237960:CDS | 45.0% | |
| ATTGGACTGTTCCAAAGCCT+TGG | + | chr2_2:11207742-11207761 | None:intergenic | 45.0% | |
| TCTTCTTCTTCCTCCTCTTG+AGG | + | chr2_2:11207804-11207823 | None:intergenic | 45.0% | |
| !! | CGAATTGAAACGGGTGTTGA+TGG | - | chr2_2:11207935-11207954 | Msa0237960:CDS | 45.0% |
| TTCTTCCTCCTCTTGAGGCA+TGG | + | chr2_2:11207799-11207818 | None:intergenic | 50.0% | |
| ATCCTCCAGTGCTTGGGATT+GGG | + | chr2_2:11208045-11208064 | None:intergenic | 50.0% | |
| TATCCTCCAGTGCTTGGGAT+TGG | + | chr2_2:11208046-11208065 | None:intergenic | 50.0% | |
| AACGGCGGAGTCACCAAACA+CGG | - | chr2_2:11207545-11207564 | Msa0237960:CDS | 55.0% | |
| GGAGTCACCAAACACGGACA+CGG | - | chr2_2:11207551-11207570 | Msa0237960:CDS | 55.0% | |
| AGAACCACCGTGTCCGTGTT+TGG | + | chr2_2:11207561-11207580 | None:intergenic | 55.0% | |
| TGAGGCCCGTTTGCAAACGA+TGG | - | chr2_2:11207640-11207659 | Msa0237960:CDS | 55.0% | |
| GGACTGTTCCAAAGCCTTGG+AGG | + | chr2_2:11207739-11207758 | None:intergenic | 55.0% | |
| GCAAACCCAATCCCAAGCAC+TGG | - | chr2_2:11208037-11208056 | Msa0237960:CDS | 55.0% | |
| !! | AACCCAATCCCAAGCACTGG+AGG | - | chr2_2:11208040-11208059 | Msa0237960:CDS | 55.0% |
| GTCACCAAACACGGACACGG+TGG | - | chr2_2:11207554-11207573 | Msa0237960:CDS | 60.0% | |
| CACGGACACGGTGGTTCTTC+CGG | - | chr2_2:11207563-11207582 | Msa0237960:CDS | 60.0% | |
| TAACGCGGCCATGCCTCAAG+AGG | - | chr2_2:11207788-11207807 | Msa0237960:CDS | 60.0% | |
| CGCGGCCATGCCTCAAGAGG+AGG | - | chr2_2:11207791-11207810 | Msa0237960:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11207531 | 11208112 | 11207531 | ID=Msa0237960;Name=Msa0237960 |
| chr2_2 | mRNA | 11207531 | 11208112 | 11207531 | ID=Msa0237960-mRNA-1;Parent=Msa0237960;Name=Msa0237960-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|193 |
| chr2_2 | exon | 11207531 | 11208112 | 11207531 | ID=Msa0237960-mRNA-1:exon:4906;Parent=Msa0237960-mRNA-1 |
| chr2_2 | CDS | 11207531 | 11208112 | 11207531 | ID=Msa0237960-mRNA-1:cds;Parent=Msa0237960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
