AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464530 MtrunA17_Chr3g0115801 83.457 405 32 7 1 387 1 388 0.0 588
Msa0464530 MtrunA17_Chr8g0382201 55.721 402 136 10 7 387 87 467 1.45e-129 381
Msa0464530 MtrunA17_Chr3g0137941 36.250 240 129 5 150 385 157 376 7.67e-38 140
Msa0464530 MtrunA17_Chr3g0137941 27.465 142 100 1 155 293 257 398 1.73e-13 71.2
Msa0464530 MtrunA17_Chr1g0149111 35.391 243 127 5 150 385 174 393 1.06e-37 140
Msa0464530 MtrunA17_Chr1g0149111 31.522 184 101 5 204 385 135 295 1.81e-15 77.4
Msa0464530 MtrunA17_Chr1g0149111 26.667 165 114 2 128 285 243 407 6.86e-14 72.8
Msa0464530 MtrunA17_Chr4g0063561 35.565 239 131 4 150 385 159 377 2.28e-36 136
Msa0464530 MtrunA17_Chr4g0063561 29.730 185 104 5 204 385 119 280 2.33e-13 70.9
Msa0464530 MtrunA17_Chr4g0063561 26.056 142 103 1 146 285 250 391 6.65e-12 66.6
Msa0464530 MtrunA17_Chr7g0242311 36.134 238 121 7 150 385 131 339 2.08e-35 133
Msa0464530 MtrunA17_Chr7g0242311 26.994 163 113 3 146 307 218 375 6.30e-13 69.7
Msa0464530 MtrunA17_Chr4g0006851 35.565 239 123 7 149 385 132 341 2.94e-33 127
Msa0464530 MtrunA17_Chr4g0006851 26.250 160 112 3 146 304 220 374 3.23e-12 67.4
Msa0464530 MtrunA17_Chr7g0240341 29.675 246 138 6 153 385 74 297 2.65e-26 107
Msa0464530 MtrunA17_Chr7g0240341 25.325 154 103 3 141 286 163 312 4.67e-12 66.6
Msa0464530 MtrunA17_Chr8g0385571 31.984 247 140 7 147 385 259 485 1.01e-24 105
Msa0464530 MtrunA17_Chr8g0385571 26.897 145 102 2 147 287 357 501 2.59e-12 68.2
Msa0464530 MtrunA17_Chr8g0385571 28.333 180 107 5 208 385 227 386 5.45e-12 67.0
Msa0464530 MtrunA17_Chr4g0067231 27.273 253 155 6 148 383 66 306 8.23e-24 100
Msa0464530 MtrunA17_Chr4g0067231 28.485 165 97 4 147 291 164 327 5.21e-15 75.5
Msa0464530 MtrunA17_Chr4g0067231 24.519 208 119 5 200 385 2 193 5.30e-12 66.2
Msa0464530 MtrunA17_Chr5g0436041 29.021 286 164 8 117 385 41 304 6.07e-23 98.2
Msa0464530 MtrunA17_Chr5g0396801 28.958 259 147 5 152 387 79 323 1.02e-22 98.2
Msa0464530 MtrunA17_Chr5g0396801 29.560 159 93 3 146 285 177 335 9.36e-17 80.9
Msa0464530 MtrunA17_Chr8g0347451 28.736 261 147 5 152 387 92 338 1.22e-22 98.2
Msa0464530 MtrunA17_Chr8g0347451 27.950 161 95 3 146 285 190 350 7.73e-16 78.2
Msa0464530 MtrunA17_Chr8g0347451 27.322 183 115 4 208 385 51 220 4.93e-11 63.5
Msa0464530 MtrunA17_Chr7g0252401 27.419 248 151 6 147 387 239 464 2.52e-22 98.2
Msa0464530 MtrunA17_Chr7g0252401 28.415 183 111 4 205 385 204 368 6.89e-14 72.8
Msa0464530 MtrunA17_Chr7g0252401 26.812 138 98 2 151 287 343 478 4.66e-12 67.4
Msa0464530 MtrunA17_Chr2g0296061 27.626 257 149 8 148 383 65 305 4.06e-22 95.9
Msa0464530 MtrunA17_Chr2g0296061 28.025 157 92 3 155 291 171 326 1.08e-15 77.4
Msa0464530 MtrunA17_Chr6g0488081 27.059 255 145 5 152 387 59 291 3.25e-21 93.2
Msa0464530 MtrunA17_Chr3g0131501 27.935 247 150 8 147 385 237 463 1.12e-20 93.6
Msa0464530 MtrunA17_Chr3g0131501 26.241 141 100 2 151 287 339 479 1.34e-11 65.9
Msa0464530 MtrunA17_Chr8g0393031 28.992 238 131 8 159 382 72 285 3.94e-20 90.1
Msa0464530 MtrunA17_Chr3g0135801 26.800 250 149 6 146 383 76 303 1.05e-18 86.3
Msa0464530 MtrunA17_Chr4g0000261 24.335 263 157 6 146 387 97 338 2.54e-18 85.5
Msa0464530 MtrunA17_Chr3g0135861 24.719 267 153 4 147 387 70 314 7.05e-18 84.0
Msa0464530 MtrunA17_Chr4g0028531 29.762 168 108 3 129 288 138 303 3.38e-16 78.6
Msa0464530 MtrunA17_Chr8g0386871 25.000 244 156 4 146 386 352 571 4.21e-15 77.0
Msa0464530 MtrunA17_Chr8g0386871 26.712 146 102 3 146 288 444 587 3.24e-12 68.2
Msa0464530 MtrunA17_Chr2g0328891 26.378 254 149 9 146 385 107 336 4.38e-14 72.8
Msa0464530 MtrunA17_Chr5g0411411 26.613 248 149 8 149 383 51 278 5.19e-14 72.0
Msa0464530 MtrunA17_Chr6g0488341 24.082 245 144 5 152 387 5 216 9.62e-14 70.5
Msa0464530 MtrunA17_Chr4g0040341 26.378 254 149 9 146 385 116 345 2.02e-13 70.9
Msa0464530 MtrunA17_Chr8g0366791 26.016 246 149 8 149 381 51 276 2.03e-13 70.5
Msa0464530 MtrunA17_Chr3g0133111 26.027 146 101 3 146 285 163 307 1.07e-12 68.2
Msa0464530 MtrunA17_Chr7g0269701 29.670 182 99 5 210 381 24 186 1.55e-12 67.8
Msa0464530 MtrunA17_Chr3g0088301 25.591 254 151 10 146 385 134 363 2.93e-12 67.8
Msa0464530 MtrunA17_Chr8g0383321 28.889 135 94 2 152 285 169 302 5.77e-12 66.2
Msa0464530 MtrunA17_Chr7g0219891 23.790 248 160 7 146 379 55 287 5.95e-12 66.2
Msa0464530 MtrunA17_Chr1g0200171 26.174 149 108 2 147 295 645 791 8.43e-12 67.0
Msa0464530 MtrunA17_Chr8g0372531 25.203 246 165 8 146 383 52 286 1.00e-11 65.5
Msa0464530 MtrunA17_Chr5g0423111 26.400 250 156 5 148 387 59 290 1.22e-11 65.5
Msa0464530 MtrunA17_Chr8g0352031 25.098 255 152 8 146 385 109 339 4.71e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464530 AT5G64970.1 66.454 313 88 6 90 387 97 407 8.43e-134 390
Msa0464530 AT5G64970.3 67.340 297 83 4 101 384 109 404 4.60e-133 387
Msa0464530 AT5G64970.2 76.763 241 56 0 147 387 43 283 3.90e-131 378
Msa0464530 AT1G78180.1 57.368 380 130 9 30 387 31 400 5.85e-118 349
Msa0464530 AT4G32400.1 33.333 240 136 5 150 385 149 368 1.09e-32 127
Msa0464530 AT4G32400.1 32.065 184 100 7 204 385 110 270 1.51e-13 72.0
Msa0464530 AT4G32400.1 26.573 143 102 1 146 285 240 382 9.68e-13 69.3
Msa0464530 AT3G51870.1 33.473 239 128 8 149 385 134 343 3.92e-32 125
Msa0464530 AT3G51870.1 26.415 159 113 3 146 304 222 376 2.01e-11 65.5
Msa0464530 AT5G01500.1 35.146 239 124 8 149 385 162 371 2.47e-31 123
Msa0464530 AT5G01500.1 26.036 169 119 3 146 313 250 413 9.01e-11 63.5
Msa0464530 AT3G53940.1 31.660 259 139 6 142 385 108 343 7.00e-30 118
Msa0464530 AT3G53940.1 23.333 150 109 2 141 285 209 357 1.30e-11 65.9
Msa0464530 AT3G55640.1 29.720 286 162 8 117 385 45 308 4.85e-29 115
Msa0464530 AT3G55640.1 24.667 150 107 3 141 285 174 322 2.80e-12 67.8
Msa0464530 AT3G55640.4 29.720 286 162 8 117 385 45 308 4.85e-29 115
Msa0464530 AT3G55640.4 24.667 150 107 3 141 285 174 322 2.80e-12 67.8
Msa0464530 AT2G37890.1 31.020 245 133 6 155 385 93 315 9.41e-29 115
Msa0464530 AT2G37890.1 23.841 151 107 3 141 285 181 329 6.68e-11 63.5
Msa0464530 AT4G26180.1 28.682 258 138 8 152 387 61 294 3.34e-24 102
Msa0464530 AT5G51050.1 29.675 246 142 5 148 385 256 478 3.37e-24 104
Msa0464530 AT5G51050.1 30.935 139 91 3 151 287 359 494 7.30e-13 70.1
Msa0464530 AT5G51050.1 27.072 181 110 5 208 385 223 384 4.25e-11 64.7
Msa0464530 AT4G26180.2 28.627 255 136 8 152 384 61 291 6.36e-24 100
Msa0464530 AT4G01100.3 30.038 263 141 7 152 387 33 279 1.70e-23 99.8
Msa0464530 AT4G01100.3 29.012 162 94 3 146 286 131 292 2.63e-15 76.3
Msa0464530 AT4G01100.1 30.038 263 141 7 152 387 83 329 5.89e-23 99.4
Msa0464530 AT4G01100.1 29.193 161 93 3 146 285 181 341 4.80e-15 76.3
Msa0464530 AT3G53940.2 35.849 159 94 3 142 292 108 266 3.81e-22 95.9
Msa0464530 AT3G55640.2 33.516 182 111 5 117 288 45 226 4.27e-22 94.7
Msa0464530 AT3G55640.3 33.516 182 111 5 117 288 45 226 4.27e-22 94.7
Msa0464530 AT5G07320.1 27.869 244 144 6 148 385 242 459 1.75e-21 96.3
Msa0464530 AT3G20240.1 26.772 254 144 8 155 387 92 324 2.51e-21 94.4
Msa0464530 AT3G20240.1 25.556 180 128 2 118 291 163 342 1.64e-11 65.5
Msa0464530 AT5G61810.2 28.099 242 142 6 152 387 102 317 3.21e-21 94.0
Msa0464530 AT4G01100.2 29.603 277 138 8 152 387 83 343 4.72e-21 94.0
Msa0464530 AT4G01100.2 29.193 161 93 3 146 285 195 355 5.54e-15 76.3
Msa0464530 AT5G48970.2 27.778 252 148 7 153 383 6 244 5.63e-21 92.0
Msa0464530 AT5G48970.2 24.845 161 97 4 154 291 106 265 1.49e-12 67.8
Msa0464530 AT5G61810.1 28.099 242 142 6 152 387 245 460 5.94e-21 94.7
Msa0464530 AT5G48970.1 27.132 258 154 7 147 383 71 315 1.95e-20 91.7
Msa0464530 AT5G48970.1 25.000 160 96 4 155 291 178 336 3.39e-12 67.4
Msa0464530 AT5G48970.1 27.083 192 108 5 210 385 24 199 4.93e-12 67.0
Msa0464530 AT5G56450.1 26.087 253 155 6 146 387 80 311 4.62e-19 87.8
Msa0464530 AT1G14560.2 28.972 214 114 4 152 349 67 258 6.20e-19 87.0
Msa0464530 AT1G14560.1 28.972 214 114 4 152 349 67 258 6.66e-19 87.4
Msa0464530 AT3G21390.1 25.197 254 165 6 147 383 66 311 8.20e-19 87.0
Msa0464530 AT3G21390.1 22.981 161 100 2 147 283 165 325 8.71e-12 66.2
Msa0464530 AT3G21390.1 25.789 190 111 6 210 385 21 194 1.97e-11 65.1
Msa0464530 AT3G21390.2 25.197 254 165 6 147 383 88 333 1.12e-18 87.0
Msa0464530 AT3G21390.2 26.267 217 124 8 189 385 16 216 5.77e-13 70.1
Msa0464530 AT3G21390.2 23.377 154 94 2 154 283 194 347 9.24e-12 66.2
Msa0464530 AT4G11440.1 25.979 281 183 5 113 386 325 587 3.30e-15 77.8
Msa0464530 AT4G11440.2 25.979 281 183 5 113 386 325 587 3.30e-15 77.8
Msa0464530 AT5G17400.1 27.686 242 137 9 155 382 64 281 2.50e-14 73.6
Msa0464530 AT5G46800.2 25.896 251 144 8 150 381 51 278 5.47e-14 72.4
Msa0464530 AT5G46800.3 25.896 251 144 8 150 381 51 278 5.47e-14 72.4
Msa0464530 AT5G46800.1 25.896 251 144 8 150 381 51 278 5.47e-14 72.4
Msa0464530 AT5G26200.1 23.904 251 152 8 154 379 78 314 1.81e-13 71.2
Msa0464530 AT4G28390.1 25.197 254 152 8 146 385 124 353 2.48e-13 71.2
Msa0464530 AT4G28390.2 25.197 254 152 8 146 385 124 353 2.48e-13 71.2
Msa0464530 AT5G09470.1 25.564 133 99 0 146 278 190 322 1.64e-12 68.6
Msa0464530 AT4G39460.2 27.950 161 100 4 152 307 175 324 2.08e-12 68.2
Msa0464530 AT4G39460.1 27.950 161 100 4 152 307 175 324 2.08e-12 68.2
Msa0464530 AT4G39460.3 27.950 161 100 4 152 307 175 324 2.08e-12 68.2
Msa0464530 AT1G25380.1 28.514 249 149 7 148 387 63 291 6.38e-12 67.0
Msa0464530 AT1G25380.1 32.584 178 85 8 219 384 33 187 7.06e-11 63.5
Msa0464530 AT1G25380.2 28.514 249 149 7 148 387 63 291 6.38e-12 67.0
Msa0464530 AT1G25380.2 32.584 178 85 8 219 384 33 187 7.06e-11 63.5
Msa0464530 AT2G26360.1 27.586 174 118 4 117 289 211 377 6.53e-12 67.0
Msa0464530 AT1G14560.3 27.313 227 118 6 186 387 3 207 6.59e-12 65.5
Msa0464530 AT1G79900.1 28.767 146 97 4 151 292 146 288 1.06e-11 65.5
Msa0464530 AT5G58970.1 21.339 239 160 3 152 384 64 280 1.32e-11 65.5
Msa0464530 AT3G54110.1 22.951 244 157 5 146 381 56 276 2.58e-11 64.7
Msa0464530 AT1G34065.1 27.007 137 98 2 150 285 197 332 3.83e-11 64.3
Msa0464530 AT1G34065.2 27.007 137 98 2 150 285 190 325 4.11e-11 64.3
Msa0464530 AT5G66380.1 24.400 250 161 8 146 383 48 281 7.61e-11 63.2
Msa0464530 AT5G13490.1 25.207 242 142 9 159 385 142 359 7.98e-11 63.5
Msa0464530 AT5G13490.2 25.207 242 142 9 159 385 142 359 7.98e-11 63.5
Msa0464530 AT5G01340.1 23.353 167 121 3 129 288 133 299 9.81e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGGGTTGAAGAAAA+TGG 0.186752 3_3:+64595330 None:intergenic
ACTTATTCCCAGCTTATTAC+AGG 0.250299 3_3:-64592485 Msa0464530:CDS
AAACCGTTTGTATTGCAAAA+TGG 0.262834 3_3:-64595121 Msa0464530:CDS
AGCAATAAACCTCTCAAAAT+TGG 0.279930 3_3:+64593611 None:intergenic
GCTGAACCCTTCGCCGTTGC+CGG 0.290589 3_3:+64595206 None:intergenic
GCCTTTGATCAGCTAGAGTT+GGG 0.301546 3_3:-64592685 Msa0464530:CDS
ATAATACTACTAAGCATCTT+TGG 0.303243 3_3:-64595015 Msa0464530:CDS
CTTGATTCTTTGCTTTCCTT+CGG 0.314639 3_3:+64592738 None:intergenic
CCATGCAACAATGTCCTTAC+TGG 0.315349 3_3:+64592661 None:intergenic
GAAACTTTGGGTGGTGTAAT+TGG 0.334173 3_3:-64592901 Msa0464530:CDS
TTTATTGCTGGTGCTGCTGC+TGG 0.342340 3_3:-64593597 Msa0464530:CDS
TCCGCCAGGTGCCACTATCT+TGG 0.344178 3_3:+64592924 None:intergenic
TTGATTCTTTGCTTTCCTTC+GGG 0.346752 3_3:+64592739 None:intergenic
GGTGTCAAACGGTGTCGTTT+TGG 0.355217 3_3:-64595074 Msa0464530:CDS
TTGTTGCATGGGGCTATTGC+TGG 0.364598 3_3:-64592649 Msa0464530:CDS
CGGTTCGCAGAATATTTAGA+AGG 0.372550 3_3:+64593715 None:intergenic
TGCCTCCTCACCACTTCAAA+TGG 0.377301 3_3:+64592601 None:intergenic
GGCACCTGGCGGAGAAACTT+TGG 0.384109 3_3:-64592914 Msa0464530:CDS
AAACAACTACTTAGATTCTC+TGG 0.390111 3_3:-64593648 Msa0464530:CDS
CTTCAGTTTGAATCATGTAT+TGG 0.396950 3_3:+64592872 None:intergenic
CCATAAAAGACTGCACTAGA+AGG 0.436323 3_3:+64592799 None:intergenic
GAATTGGGGTTGAAGAAAAT+GGG 0.436592 3_3:+64595331 None:intergenic
GCACCTGGCGGAGAAACTTT+GGG 0.438440 3_3:-64592913 Msa0464530:CDS
TGCCTTTGATCAGCTAGAGT+TGG 0.440567 3_3:-64592686 Msa0464530:CDS
TGAAGATTTGATTCCGATGA+AGG 0.444586 3_3:+64595232 None:intergenic
TTCAACCCCAATTCCAATCC+CGG 0.453864 3_3:-64595322 Msa0464530:CDS
GGCATTTCAGCCCTCTATGC+AGG 0.455367 3_3:-64592508 Msa0464530:CDS
ATTTAATACCTGTAATAAGC+TGG 0.455738 3_3:+64592477 None:intergenic
TGGTGAAGATGTTTCTGATA+AGG 0.457238 3_3:-64595101 Msa0464530:CDS
AAGAACTTAATTTAGTAGAC+TGG 0.463964 3_3:+64592563 None:intergenic
CCCCTCCGGGATTGGAATTG+GGG 0.473569 3_3:+64595317 None:intergenic
GGAAGATTAGTAGTACTATT+CGG 0.474460 3_3:+64595154 None:intergenic
AGCTAGAGTTGGGGCCAGTA+AGG 0.478052 3_3:-64592675 Msa0464530:CDS
AATGAAACGAACAAAGGAAT+CGG 0.485907 3_3:+64595267 None:intergenic
AACAAAGGAATCGGGAATTG+AGG 0.486618 3_3:+64595276 None:intergenic
CAGTAAGGACATTGTTGCAT+GGG 0.487811 3_3:-64592660 Msa0464530:CDS
AAGTCAATTGCTACAACTCA+AGG 0.489182 3_3:-64593762 Msa0464530:CDS
TTCACCGCCGGCAACGGCGA+AGG 0.493917 3_3:-64595213 Msa0464530:CDS
ACCACTTGAAAGACTTAAGC+TGG 0.503394 3_3:-64593829 Msa0464530:CDS
CCAGTAAGGACATTGTTGCA+TGG 0.504976 3_3:-64592661 Msa0464530:CDS
GAATATGCATAAACATGGGC+AGG 0.505465 3_3:-64592716 Msa0464530:CDS
ACTACTAAGCATCTTTGGTC+TGG 0.506671 3_3:-64595010 Msa0464530:intron
GGGAATAAGTCCTGCATAGA+GGG 0.511616 3_3:+64592498 None:intergenic
TTCGTTACGATTTCCTTCAT+CGG 0.512595 3_3:-64595245 Msa0464530:CDS
ATGAAACGAACAAAGGAATC+GGG 0.523024 3_3:+64595268 None:intergenic
GCCTCCTCACCACTTCAAAT+GGG 0.526042 3_3:+64592602 None:intergenic
AAGCTGGAATATATTGTTCG+TGG 0.526261 3_3:-64593813 Msa0464530:intron
ATAGATTCGGACCAAGATAG+TGG 0.529404 3_3:-64592935 Msa0464530:intron
ACTTAGATTCTCTGGAAATG+AGG 0.532399 3_3:-64593640 Msa0464530:CDS
TTTAATACCTGTAATAAGCT+GGG 0.532838 3_3:+64592478 None:intergenic
TCACCGCCGGCAACGGCGAA+GGG 0.533874 3_3:-64595212 Msa0464530:CDS
CGGCGAAGGGTTCAGCCGGT+TGG 0.538502 3_3:-64595199 Msa0464530:CDS
CAAATCTTCACCGCCGGCAA+CGG 0.539331 3_3:-64595219 Msa0464530:CDS
ACAAAGGAATCGGGAATTGA+GGG 0.548362 3_3:+64595277 None:intergenic
GATAAGGAGACGGTGTCAAA+CGG 0.552442 3_3:-64595085 Msa0464530:CDS
CCCAATTCCAATCCCGGAGG+GGG 0.553381 3_3:-64595316 Msa0464530:CDS
GAACCCTTCGCCGTTGCCGG+CGG 0.559083 3_3:+64595209 None:intergenic
ATCAAGAATATGCATAAACA+TGG 0.565369 3_3:-64592721 Msa0464530:CDS
TGGGAATAAGTCCTGCATAG+AGG 0.566782 3_3:+64592497 None:intergenic
CCACCCAAAGTTTCTCCGCC+AGG 0.569871 3_3:+64592910 None:intergenic
AGTACCATCACTTATAAGCA+TGG 0.578373 3_3:-64592824 Msa0464530:CDS
GCTACAACTCAAGGTTTGAG+AGG 0.579884 3_3:-64593753 Msa0464530:CDS
CAATACATGATTCAAACTGA+AGG 0.582238 3_3:-64592871 Msa0464530:CDS
TCCAGCTTAAGTCTTTCAAG+TGG 0.587617 3_3:+64593828 None:intergenic
GGAGCCATGCTTATAAGTGA+TGG 0.588027 3_3:+64592820 None:intergenic
CCCCAACTCTAGCTGATCAA+AGG 0.592324 3_3:+64592684 None:intergenic
TTTGTCAAAATTGTGGAACA+AGG 0.592430 3_3:-64592532 Msa0464530:CDS
TCTTATCTGCATTCACCCGA+AGG 0.594846 3_3:-64592754 Msa0464530:CDS
ACCCATTTGAAGTGGTGAGG+AGG 0.596577 3_3:-64592603 Msa0464530:CDS
GCAACGGCGAAGGGTTCAGC+CGG 0.598916 3_3:-64595203 Msa0464530:CDS
ACCCCAATTCCAATCCCGGA+GGG 0.598956 3_3:-64595318 Msa0464530:CDS
CGGAATCAAATCTTCACCGC+CGG 0.601286 3_3:-64595225 Msa0464530:CDS
TGCTACATACCCATTTGAAG+TGG 0.602917 3_3:-64592611 Msa0464530:CDS
CGGACCAAGATAGTGGCACC+TGG 0.603892 3_3:-64592928 Msa0464530:CDS
TCACCACGTACAGTATCAAG+TGG 0.614556 3_3:+64593549 None:intergenic
AAATGGGAAGAGAATGTGAA+TGG 0.619907 3_3:+64595347 None:intergenic
CTAAAATTAACAGCTTTGAA+CGG 0.620147 3_3:+64593690 None:intergenic
GTCAAAATTGTGGAACAAGG+AGG 0.624778 3_3:-64592529 Msa0464530:CDS
CACGTACAGTATCAAGTGGA+AGG 0.625172 3_3:+64593553 None:intergenic
CCCCAATTCCAATCCCGGAG+GGG 0.625308 3_3:-64595317 Msa0464530:CDS
CCTTTGATCAGCTAGAGTTG+GGG 0.635456 3_3:-64592684 Msa0464530:CDS
TCAAGAATATGCATAAACAT+GGG 0.635732 3_3:-64592720 Msa0464530:CDS
AGATGTTTCTGATAAGGAGA+CGG 0.648470 3_3:-64595095 Msa0464530:CDS
CATACCCATTTGAAGTGGTG+AGG 0.653731 3_3:-64592606 Msa0464530:CDS
TGGGAAGAGAATGTGAATGG+TGG 0.669990 3_3:+64595350 None:intergenic
TAACGAAATGAAACGAACAA+AGG 0.674347 3_3:+64595261 None:intergenic
AGTAAGGACATTGTTGCATG+GGG 0.675534 3_3:-64592659 Msa0464530:CDS
AACCCCAATTCCAATCCCGG+AGG 0.678704 3_3:-64595319 Msa0464530:CDS
AAGGTTAGGGCTAGAGAACG+CGG 0.685827 3_3:-64595046 Msa0464530:CDS
CCTGGCGGAGAAACTTTGGG+TGG 0.690555 3_3:-64592910 Msa0464530:CDS
ACCAAGATAGTGGCACCTGG+CGG 0.692494 3_3:-64592925 Msa0464530:CDS
ATTAACAGCTTTGAACGGAG+CGG 0.702918 3_3:+64593695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTACTAGCTTATAA+TGG + chr3_3:64593271-64593290 None:intergenic 15.0%
!!! ATTAAGTTGTTTATCTAAAT+AGG - chr3_3:64593523-64593542 Msa0464530:intron 15.0%
!!! TTAAGTTGTTTATCTAAATA+GGG - chr3_3:64593524-64593543 Msa0464530:intron 15.0%
!! TCTAAATAAATAATCAAATG+TGG + chr3_3:64593952-64593971 None:intergenic 15.0%
!! AAACACAGAAAAAATATAAG+TGG + chr3_3:64593722-64593741 None:intergenic 20.0%
!! ATTAAATCAAGATGATTACT+AGG + chr3_3:64593916-64593935 None:intergenic 20.0%
!! TAGTAATCATCTTGATTTAA+TGG - chr3_3:64593915-64593934 Msa0464530:intron 20.0%
!!! TCTTTAACTTTCTTTAGTTA+AGG - chr3_3:64594450-64594469 Msa0464530:intron 20.0%
!!! TAGGTATAATTTGTTTCATA+TGG - chr3_3:64594638-64594657 Msa0464530:intron 20.0%
! ATAATACTACTAAGCATCTT+TGG - chr3_3:64592838-64592857 Msa0464530:CDS 25.0%
!!! TCATAAGTTGATTTCAACTT+AGG - chr3_3:64592978-64592997 Msa0464530:intron 25.0%
! GTTTATATATTTGCAGTGTT+TGG - chr3_3:64593114-64593133 Msa0464530:intron 25.0%
!! TGAACTAGCTTATAAATATG+AGG - chr3_3:64593150-64593169 Msa0464530:intron 25.0%
! TTGACTAAAAAAAACTCGTT+TGG + chr3_3:64593323-64593342 None:intergenic 25.0%
!! AAAATATAAGTGGAGTTTTG+AGG + chr3_3:64593712-64593731 None:intergenic 25.0%
! AAAAACAAGAAACACAAGTT+AGG - chr3_3:64593759-64593778 Msa0464530:CDS 25.0%
!!! CTAAAATTAACAGCTTTGAA+CGG + chr3_3:64594166-64594185 None:intergenic 25.0%
! ATGTGCAAGTTTATTCAATT+GGG + chr3_3:64594365-64594384 None:intergenic 25.0%
! AAACTATTTATGCAAAACAG+AGG + chr3_3:64594607-64594626 None:intergenic 25.0%
! AACAGGATATCAAACATATT+TGG + chr3_3:64594721-64594740 None:intergenic 25.0%
! TGTTGTAACATGCATTTATT+TGG - chr3_3:64594778-64594797 Msa0464530:intron 25.0%
! ATCAAGAATATGCATAAACA+TGG - chr3_3:64595132-64595151 Msa0464530:CDS 25.0%
! TCAAGAATATGCATAAACAT+GGG - chr3_3:64595133-64595152 Msa0464530:CDS 25.0%
! AAGAACTTAATTTAGTAGAC+TGG + chr3_3:64595293-64595312 None:intergenic 25.0%
! TTTAATACCTGTAATAAGCT+GGG + chr3_3:64595378-64595397 None:intergenic 25.0%
! ATTTAATACCTGTAATAAGC+TGG + chr3_3:64595379-64595398 None:intergenic 25.0%
AATGAAACGAACAAAGGAAT+CGG + chr3_3:64592589-64592608 None:intergenic 30.0%
TAACGAAATGAAACGAACAA+AGG + chr3_3:64592595-64592614 None:intergenic 30.0%
GGAAGATTAGTAGTACTATT+CGG + chr3_3:64592702-64592721 None:intergenic 30.0%
!!! CAATACAAACGGTTTTGAAT+CGG + chr3_3:64592727-64592746 None:intergenic 30.0%
AAACCGTTTGTATTGCAAAA+TGG - chr3_3:64592732-64592751 Msa0464530:CDS 30.0%
! TCACCATTTTGCAATACAAA+CGG + chr3_3:64592738-64592757 None:intergenic 30.0%
!! TCGTTTTGGATAAAAAGGTT+AGG - chr3_3:64592793-64592812 Msa0464530:CDS 30.0%
!! CGTTTTGGATAAAAAGGTTA+GGG - chr3_3:64592794-64592813 Msa0464530:CDS 30.0%
ATTGTATTTGTGAGACTAGT+TGG - chr3_3:64592927-64592946 Msa0464530:CDS 30.0%
CTTATTGAATTTGCAGTGTT+TGG - chr3_3:64593071-64593090 Msa0464530:intron 30.0%
AAATGAGCTTACAAGACATA+AGG - chr3_3:64593341-64593360 Msa0464530:intron 30.0%
CTGCAAGCTGATAAAAATAA+GGG + chr3_3:64593399-64593418 None:intergenic 30.0%
TCTGCAAGCTGATAAAAATA+AGG + chr3_3:64593400-64593419 None:intergenic 30.0%
CAGAAATAGCTTATGAAAAC+AGG - chr3_3:64593416-64593435 Msa0464530:intron 30.0%
TCTTTCTAGGTAGAAGTTTA+TGG - chr3_3:64593606-64593625 Msa0464530:CDS 30.0%
TTTAGGCAAAATCTAAGTGT+TGG - chr3_3:64593858-64593877 Msa0464530:intron 30.0%
AATCAAGATGATTACTAGGA+TGG + chr3_3:64593912-64593931 None:intergenic 30.0%
! CTATCTGAAATTCTGCTAAA+TGG - chr3_3:64593976-64593995 Msa0464530:intron 30.0%
AAACAACTACTTAGATTCTC+TGG - chr3_3:64594205-64594224 Msa0464530:intron 30.0%
AGCAATAAACCTCTCAAAAT+TGG + chr3_3:64594245-64594264 None:intergenic 30.0%
!! AATTTTGAGAGGTTTATTGC+TGG - chr3_3:64594244-64594263 Msa0464530:intron 30.0%
CATGTGCAAGTTTATTCAAT+TGG + chr3_3:64594366-64594385 None:intergenic 30.0%
ATGAACATGACTATTGATCT+TGG - chr3_3:64594383-64594402 Msa0464530:intron 30.0%
TCTTTAGTTAAGGAGACATT+TGG - chr3_3:64594460-64594479 Msa0464530:intron 30.0%
AGGAACATATATGGATACAA+GGG + chr3_3:64594587-64594606 None:intergenic 30.0%
!! ATTATGGAAGTACTTCAAAC+AGG + chr3_3:64594738-64594757 None:intergenic 30.0%
! TGTTTGAAGTACTTCCATAA+TGG - chr3_3:64594737-64594756 Msa0464530:intron 30.0%
TCTTACAACACATACCATTA+TGG + chr3_3:64594754-64594773 None:intergenic 30.0%
AAATGCATGTTACATGATTC+AGG + chr3_3:64594825-64594844 None:intergenic 30.0%
TACTGTGTGTCTTATAGATT+CGG - chr3_3:64594905-64594924 Msa0464530:intron 30.0%
CTTCAGTTTGAATCATGTAT+TGG + chr3_3:64594984-64595003 None:intergenic 30.0%
CAATACATGATTCAAACTGA+AGG - chr3_3:64594982-64595001 Msa0464530:intron 30.0%
! AGCAACTTTTGTCAAAATTG+TGG - chr3_3:64595314-64595333 Msa0464530:CDS 30.0%
TTTGTCAAAATTGTGGAACA+AGG - chr3_3:64595321-64595340 Msa0464530:CDS 30.0%
AAATGGGAAGAGAATGTGAA+TGG + chr3_3:64592509-64592528 None:intergenic 35.0%
GAATTGGGGTTGAAGAAAAT+GGG + chr3_3:64592525-64592544 None:intergenic 35.0%
ATGAAACGAACAAAGGAATC+GGG + chr3_3:64592588-64592607 None:intergenic 35.0%
TTCGTTACGATTTCCTTCAT+CGG - chr3_3:64592608-64592627 Msa0464530:CDS 35.0%
TGAAGATTTGATTCCGATGA+AGG + chr3_3:64592624-64592643 None:intergenic 35.0%
! TGGTGAAGATGTTTCTGATA+AGG - chr3_3:64592752-64592771 Msa0464530:CDS 35.0%
! AGATGTTTCTGATAAGGAGA+CGG - chr3_3:64592758-64592777 Msa0464530:CDS 35.0%
CTATATCTGCAATGGTTTCT+AGG - chr3_3:64592868-64592887 Msa0464530:CDS 35.0%
ATTTCAACTTAGGCTCTGTT+TGG - chr3_3:64592988-64593007 Msa0464530:intron 35.0%
! GCTGATAAACTAGTTTGTAG+CGG - chr3_3:64593032-64593051 Msa0464530:intron 35.0%
ACACTGCAAATTCAATAAGC+TGG + chr3_3:64593070-64593089 None:intergenic 35.0%
AAATAGGGCCATAGTCTATA+TGG - chr3_3:64593539-64593558 Msa0464530:intron 35.0%
AATAGGGCCATAGTCTATAT+GGG - chr3_3:64593540-64593559 Msa0464530:intron 35.0%
GAAACTCTTACGATAGATGT+TGG - chr3_3:64593583-64593602 Msa0464530:CDS 35.0%
TGATTGCGATACTAATCCAA+TGG - chr3_3:64593645-64593664 Msa0464530:CDS 35.0%
GATTGCGATACTAATCCAAT+GGG - chr3_3:64593646-64593665 Msa0464530:CDS 35.0%
! TTTGTTGTCGTTGAAGCTTT+AGG - chr3_3:64593841-64593860 Msa0464530:CDS 35.0%
AAGCTGGAATATATTGTTCG+TGG - chr3_3:64594040-64594059 Msa0464530:intron 35.0%
AAGTCAATTGCTACAACTCA+AGG - chr3_3:64594091-64594110 Msa0464530:intron 35.0%
! ACTTAGATTCTCTGGAAATG+AGG - chr3_3:64594213-64594232 Msa0464530:intron 35.0%
! AGGAAACTACCAATTTTGAG+AGG - chr3_3:64594233-64594252 Msa0464530:intron 35.0%
! TTAAGGAGACATTTGGAGTT+TGG - chr3_3:64594467-64594486 Msa0464530:intron 35.0%
! GAAACGTCATGCTTTATTGA+AGG + chr3_3:64594538-64594557 None:intergenic 35.0%
GAACATATATGGATACAAGG+GGG + chr3_3:64594585-64594604 None:intergenic 35.0%
GGAACATATATGGATACAAG+GGG + chr3_3:64594586-64594605 None:intergenic 35.0%
GAGGAACATATATGGATACA+AGG + chr3_3:64594588-64594607 None:intergenic 35.0%
GCAAAACAGAGGAACATATA+TGG + chr3_3:64594596-64594615 None:intergenic 35.0%
ACACATTCAGCATAATCACT+TGG - chr3_3:64594876-64594895 Msa0464530:intron 35.0%
! AGGCATCTTTTCTCTATACA+AGG - chr3_3:64595002-64595021 Msa0464530:intron 35.0%
! GGCATCTTTTCTCTATACAA+GGG - chr3_3:64595003-64595022 Msa0464530:intron 35.0%
AGTACCATCACTTATAAGCA+TGG - chr3_3:64595029-64595048 Msa0464530:CDS 35.0%
TTGATTCTTTGCTTTCCTTC+GGG + chr3_3:64595117-64595136 None:intergenic 35.0%
CTTGATTCTTTGCTTTCCTT+CGG + chr3_3:64595118-64595137 None:intergenic 35.0%
ACTTATTCCCAGCTTATTAC+AGG - chr3_3:64595368-64595387 Msa0464530:CDS 35.0%
GGAATTGGGGTTGAAGAAAA+TGG + chr3_3:64592526-64592545 None:intergenic 40.0%
ACAAAGGAATCGGGAATTGA+GGG + chr3_3:64592579-64592598 None:intergenic 40.0%
AACAAAGGAATCGGGAATTG+AGG + chr3_3:64592580-64592599 None:intergenic 40.0%
ACCGACAAAAAACAACCAAC+CGG + chr3_3:64592672-64592691 None:intergenic 40.0%
!!! TACAAACGGTTTTGAATCGG+CGG + chr3_3:64592724-64592743 None:intergenic 40.0%
!!! CGGTGTCGTTTTGGATAAAA+AGG - chr3_3:64592788-64592807 Msa0464530:CDS 40.0%
ACTACTAAGCATCTTTGGTC+TGG - chr3_3:64592843-64592862 Msa0464530:CDS 40.0%
! GCATTGACCCATATAGACTA+TGG + chr3_3:64593550-64593569 None:intergenic 40.0%
!! CGATAGATGTTGGTCTTTCT+AGG - chr3_3:64593593-64593612 Msa0464530:CDS 40.0%
GTATCGCAATCATGAAGAGA+AGG + chr3_3:64593637-64593656 None:intergenic 40.0%
!! GCGGGTTAGGCAAAAAAATA+AGG - chr3_3:64593670-64593689 Msa0464530:CDS 40.0%
ACTGTCTTAGCTGTAAGGAT+AGG - chr3_3:64593784-64593803 Msa0464530:CDS 40.0%
CTGTCTTAGCTGTAAGGATA+GGG - chr3_3:64593785-64593804 Msa0464530:CDS 40.0%
CACATTCGACAAGAAGTTCA+AGG + chr3_3:64593815-64593834 None:intergenic 40.0%
CTTGAACTTCTTGTCGAATG+TGG - chr3_3:64593813-64593832 Msa0464530:intron 40.0%
! GAAGTGTTTCATGTGGTCTA+CGG + chr3_3:64593888-64593907 None:intergenic 40.0%
ACCACTTGAAAGACTTAAGC+TGG - chr3_3:64594024-64594043 Msa0464530:intron 40.0%
TCCAGCTTAAGTCTTTCAAG+TGG + chr3_3:64594028-64594047 None:intergenic 40.0%
ATATTGTTCGTGGTGAGAAG+AGG - chr3_3:64594050-64594069 Msa0464530:intron 40.0%
! CTCAAGGTTTGAGAGGTTTT+TGG - chr3_3:64594107-64594126 Msa0464530:intron 40.0%
!! AGGTTTGAGAGGTTTTTGGA+AGG - chr3_3:64594111-64594130 Msa0464530:intron 40.0%
!! GGTTTGAGAGGTTTTTGGAA+GGG - chr3_3:64594112-64594131 Msa0464530:intron 40.0%
!! GTTTGAGAGGTTTTTGGAAG+GGG - chr3_3:64594113-64594132 Msa0464530:intron 40.0%
CGGTTCGCAGAATATTTAGA+AGG + chr3_3:64594141-64594160 None:intergenic 40.0%
!! ATTAACAGCTTTGAACGGAG+CGG + chr3_3:64594161-64594180 None:intergenic 40.0%
ACAGTGAGTCCATGTGATTA+TGG - chr3_3:64594666-64594685 Msa0464530:intron 40.0%
CAGTGAGTCCATGTGATTAT+GGG - chr3_3:64594667-64594686 Msa0464530:intron 40.0%
AACATGGTCCCATAATCACA+TGG + chr3_3:64594678-64594697 None:intergenic 40.0%
! GCTGATTTCAGCTTCTAACA+TGG + chr3_3:64594694-64594713 None:intergenic 40.0%
TGTTAGAAGCTGAAATCAGC+AGG - chr3_3:64594694-64594713 Msa0464530:intron 40.0%
ATAGATTCGGACCAAGATAG+TGG - chr3_3:64594918-64594937 Msa0464530:intron 40.0%
GAAACTTTGGGTGGTGTAAT+TGG - chr3_3:64594952-64594971 Msa0464530:intron 40.0%
CCATAAAAGACTGCACTAGA+AGG + chr3_3:64595057-64595076 None:intergenic 40.0%
! CCTTCTAGTGCAGTCTTTTA+TGG - chr3_3:64595054-64595073 Msa0464530:CDS 40.0%
GAATATGCATAAACATGGGC+AGG - chr3_3:64595137-64595156 Msa0464530:CDS 40.0%
CAGTAAGGACATTGTTGCAT+GGG - chr3_3:64595193-64595212 Msa0464530:CDS 40.0%
AGTAAGGACATTGTTGCATG+GGG - chr3_3:64595194-64595213 Msa0464530:CDS 40.0%
TGCTACATACCCATTTGAAG+TGG - chr3_3:64595242-64595261 Msa0464530:CDS 40.0%
GTCAAAATTGTGGAACAAGG+AGG - chr3_3:64595324-64595343 Msa0464530:CDS 40.0%
TGGGAAGAGAATGTGAATGG+TGG + chr3_3:64592506-64592525 None:intergenic 45.0%
TTCAACCCCAATTCCAATCC+CGG - chr3_3:64592531-64592550 Msa0464530:CDS 45.0%
!!! GCCGGTTGGTTGTTTTTTGT+CGG - chr3_3:64592668-64592687 Msa0464530:CDS 45.0%
!!! ACAAACGGTTTTGAATCGGC+GGG + chr3_3:64592723-64592742 None:intergenic 45.0%
! GATAAGGAGACGGTGTCAAA+CGG - chr3_3:64592768-64592787 Msa0464530:CDS 45.0%
!! GTCTGGTGCTATATCTGCAA+TGG - chr3_3:64592860-64592879 Msa0464530:CDS 45.0%
CGATACTAATCCAATGGGTG+CGG - chr3_3:64593651-64593670 Msa0464530:CDS 45.0%
GATACTAATCCAATGGGTGC+GGG - chr3_3:64593652-64593671 Msa0464530:CDS 45.0%
AGGTCACTGTCTTAGCTGTA+AGG - chr3_3:64593779-64593798 Msa0464530:CDS 45.0%
!! GGATGGAGAAGTGTTTCATG+TGG + chr3_3:64593895-64593914 None:intergenic 45.0%
GCTACAACTCAAGGTTTGAG+AGG - chr3_3:64594100-64594119 Msa0464530:intron 45.0%
CACGTACAGTATCAAGTGGA+AGG + chr3_3:64594303-64594322 None:intergenic 45.0%
CTTCCACTTGATACTGTACG+TGG - chr3_3:64594301-64594320 Msa0464530:intron 45.0%
TCACCACGTACAGTATCAAG+TGG + chr3_3:64594307-64594326 None:intergenic 45.0%
! ATTCAGGTTCTGACACTGGT+TGG + chr3_3:64594809-64594828 None:intergenic 45.0%
! CATGATTCAGGTTCTGACAC+TGG + chr3_3:64594813-64594832 None:intergenic 45.0%
GGAGCCATGCTTATAAGTGA+TGG + chr3_3:64595036-64595055 None:intergenic 45.0%
TCTTATCTGCATTCACCCGA+AGG - chr3_3:64595099-64595118 Msa0464530:CDS 45.0%
TGCCTTTGATCAGCTAGAGT+TGG - chr3_3:64595167-64595186 Msa0464530:intron 45.0%
GCCTTTGATCAGCTAGAGTT+GGG - chr3_3:64595168-64595187 Msa0464530:intron 45.0%
CCTTTGATCAGCTAGAGTTG+GGG - chr3_3:64595169-64595188 Msa0464530:intron 45.0%
CCATGCAACAATGTCCTTAC+TGG + chr3_3:64595195-64595214 None:intergenic 45.0%
CCAGTAAGGACATTGTTGCA+TGG - chr3_3:64595192-64595211 Msa0464530:CDS 45.0%
! CATACCCATTTGAAGTGGTG+AGG - chr3_3:64595247-64595266 Msa0464530:CDS 45.0%
GGGAATAAGTCCTGCATAGA+GGG + chr3_3:64595358-64595377 None:intergenic 45.0%
TGGGAATAAGTCCTGCATAG+AGG + chr3_3:64595359-64595378 None:intergenic 45.0%
!! AATAGTTTAATAAAAAAAAT+AGG - chr3_3:64594619-64594638 Msa0464530:intron 5.0%
CGGAATCAAATCTTCACCGC+CGG - chr3_3:64592628-64592647 Msa0464530:CDS 50.0%
!!! GGTGTCAAACGGTGTCGTTT+TGG - chr3_3:64592779-64592798 Msa0464530:CDS 50.0%
AAGGTTAGGGCTAGAGAACG+CGG - chr3_3:64592807-64592826 Msa0464530:CDS 50.0%
TAATCCAATGGGTGCGGGTT+AGG - chr3_3:64593657-64593676 Msa0464530:CDS 50.0%
GTGTTTCATGTGGTCTACGG+TGG + chr3_3:64593885-64593904 None:intergenic 50.0%
!! TTTATTGCTGGTGCTGCTGC+TGG - chr3_3:64594256-64594275 Msa0464530:intron 50.0%
CCCCAACTCTAGCTGATCAA+AGG + chr3_3:64595172-64595191 None:intergenic 50.0%
TTGTTGCATGGGGCTATTGC+TGG - chr3_3:64595204-64595223 Msa0464530:CDS 50.0%
! ACCCATTTGAAGTGGTGAGG+AGG - chr3_3:64595250-64595269 Msa0464530:CDS 50.0%
GCCTCCTCACCACTTCAAAT+GGG + chr3_3:64595254-64595273 None:intergenic 50.0%
TGCCTCCTCACCACTTCAAA+TGG + chr3_3:64595255-64595274 None:intergenic 50.0%
AACCCCAATTCCAATCCCGG+AGG - chr3_3:64592534-64592553 Msa0464530:CDS 55.0%
ACCCCAATTCCAATCCCGGA+GGG - chr3_3:64592535-64592554 Msa0464530:CDS 55.0%
AGAAATAAGCCTCCCCCTCC+GGG + chr3_3:64592552-64592571 None:intergenic 55.0%
GAGAAATAAGCCTCCCCCTC+CGG + chr3_3:64592553-64592572 None:intergenic 55.0%
CAAATCTTCACCGCCGGCAA+CGG - chr3_3:64592634-64592653 Msa0464530:CDS 55.0%
TTTGCCTAACCCGCACCCAT+TGG + chr3_3:64593664-64593683 None:intergenic 55.0%
! CAGGTTCTGACACTGGTTGG+AGG + chr3_3:64594806-64594825 None:intergenic 55.0%
! ACCAAGATAGTGGCACCTGG+CGG - chr3_3:64594928-64594947 Msa0464530:intron 55.0%
GCACCTGGCGGAGAAACTTT+GGG - chr3_3:64594940-64594959 Msa0464530:intron 55.0%
AGCTAGAGTTGGGGCCAGTA+AGG - chr3_3:64595178-64595197 Msa0464530:intron 55.0%
GGCATTTCAGCCCTCTATGC+AGG - chr3_3:64595345-64595364 Msa0464530:CDS 55.0%
CCCCTCCGGGATTGGAATTG+GGG + chr3_3:64592539-64592558 None:intergenic 60.0%
CCCCAATTCCAATCCCGGAG+GGG - chr3_3:64592536-64592555 Msa0464530:CDS 60.0%
CCCCCTCCGGGATTGGAATT+GGG + chr3_3:64592540-64592559 None:intergenic 60.0%
CCCAATTCCAATCCCGGAGG+GGG - chr3_3:64592537-64592556 Msa0464530:CDS 60.0%
TCCCCCTCCGGGATTGGAAT+TGG + chr3_3:64592541-64592560 None:intergenic 60.0%
AATTCCAATCCCGGAGGGGG+AGG - chr3_3:64592540-64592559 Msa0464530:CDS 60.0%
! CGGACCAAGATAGTGGCACC+TGG - chr3_3:64594925-64594944 Msa0464530:intron 60.0%
!! TCCGCCAGGTGCCACTATCT+TGG + chr3_3:64594932-64594951 None:intergenic 60.0%
GGCACCTGGCGGAGAAACTT+TGG - chr3_3:64594939-64594958 Msa0464530:intron 60.0%
CCACCCAAAGTTTCTCCGCC+AGG + chr3_3:64594946-64594965 None:intergenic 60.0%
CCTGGCGGAGAAACTTTGGG+TGG - chr3_3:64594943-64594962 Msa0464530:intron 60.0%
TAAGCCTCCCCCTCCGGGAT+TGG + chr3_3:64592547-64592566 None:intergenic 65.0%
GCTGAACCCTTCGCCGTTGC+CGG + chr3_3:64592650-64592669 None:intergenic 65.0%
GCAACGGCGAAGGGTTCAGC+CGG - chr3_3:64592650-64592669 Msa0464530:CDS 65.0%
TTCACCGCCGGCAACGGCGA+AGG - chr3_3:64592640-64592659 Msa0464530:CDS 70.0%
TCACCGCCGGCAACGGCGAA+GGG - chr3_3:64592641-64592660 Msa0464530:CDS 70.0%
GAACCCTTCGCCGTTGCCGG+CGG + chr3_3:64592647-64592666 None:intergenic 70.0%
CGGCGAAGGGTTCAGCCGGT+TGG - chr3_3:64592654-64592673 Msa0464530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 64592471 64595404 64592471 ID=Msa0464530;Name=Msa0464530
chr3_3 mRNA 64592471 64595404 64592471 ID=Msa0464530-mRNA-1;Parent=Msa0464530;Name=Msa0464530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.25|0|1|0.25|0.2|5|0|387
chr3_3 exon 64595190 64595404 64595190 ID=Msa0464530-mRNA-1:exon:14261;Parent=Msa0464530-mRNA-1
chr3_3 exon 64595011 64595180 64595011 ID=Msa0464530-mRNA-1:exon:14260;Parent=Msa0464530-mRNA-1
chr3_3 exon 64593814 64593863 64593814 ID=Msa0464530-mRNA-1:exon:14259;Parent=Msa0464530-mRNA-1
chr3_3 exon 64593560 64593805 64593560 ID=Msa0464530-mRNA-1:exon:14258;Parent=Msa0464530-mRNA-1
chr3_3 exon 64592471 64592953 64592471 ID=Msa0464530-mRNA-1:exon:14257;Parent=Msa0464530-mRNA-1
chr3_3 CDS 64595190 64595404 64595190 ID=Msa0464530-mRNA-1:cds;Parent=Msa0464530-mRNA-1
chr3_3 CDS 64595011 64595180 64595011 ID=Msa0464530-mRNA-1:cds;Parent=Msa0464530-mRNA-1
chr3_3 CDS 64593814 64593863 64593814 ID=Msa0464530-mRNA-1:cds;Parent=Msa0464530-mRNA-1
chr3_3 CDS 64593560 64593805 64593560 ID=Msa0464530-mRNA-1:cds;Parent=Msa0464530-mRNA-1
chr3_3 CDS 64592471 64592953 64592471 ID=Msa0464530-mRNA-1:cds;Parent=Msa0464530-mRNA-1
Gene Sequence

>Msa0464530

ATGACGACAATGCTAGAAAGCAACATTTGCAACCACCATTCACATTCTCTTCCCATTTTCTTCAACCCCAATTCCAATCCCGGAGGGGGAGGCTTATTTCTCGAACCCTCAATTCCCGATTCCTTTGTTCGTTTCATTTCGTTACGATTTCCTTCATCGGAATCAAATCTTCACCGCCGGCAACGGCGAAGGGTTCAGCCGGTTGGTTGTTTTTTTTTACCGAATAGTACTACTAATCTTCCCGCCGATTCAAAACCGTTTGTATTGCAAAATGGTGAAGATGTTTCTGATAAGGAGACGGTGTCAAACGGTGTCGTTTTGGATAAAAAGGTTAGGGCTAGAGAACGCGGTGCTGTTAATAATACTACTAAGCATCTTTGGTCTGAACTTGTGTTGCACCACTTGAAAGACTTAAGCTGGAATATATTGTTCGTGAGGAATATCTTTGAGCTTATTAAGTCAATTGCTACAACTCAAGGTTTGAGAGGTTTTTGGAAGGGGAACCTTCTAAATATTCTGCGAACCGCTCCGTTCAAAGCTGTTAATTTTAGTGCTTACGACACATATAGAAAACAACTACTTAGATTCTCTGGAAATGAGGAAACTACCAATTTTGAGAGGTTTATTGCTGGTGCTGCTGCTGGAGTTACTGCTACTATTATTTGCCTTCCACTTGATACTATTCGGACCAAGATAGTGGCACCTGGCGGAGAAACTTTGGGTGGTGTAATTGGTGCTTTCCAATACATGATTCAAACTGAAGGCATCTTTTCTCTATACAAGGGTTTAGTACCATCACTTATAAGCATGGCTCCTTCTAGTGCAGTCTTTTATGGTGTATACGATATGCTAAAATCATCTTATCTGCATTCACCCGAAGGAAAGCAAAGAATCAAGAATATGCATAAACATGGGCAGGAACTGAGTGCCTTTGATCAGCTAGAGTTGGGGCCAGTAAGGACATTGTTGCATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACATACCCATTTGAAGTGGTGAGGAGGCAGCTTCAATTGCAAGTCCAGTCTACTAAATTAAGTTCTTTAGCAACTTTTGTCAAAATTGTGGAACAAGGAGGCATTTCAGCCCTCTATGCAGGACTTATTCCCAGCTTATTACAGGTATTAAATTCTTAA
Protein sequence

>Msa0464530

MTTMLESNICNHHSHSLPIFFNPNSNPGGGGLFLEPSIPDSFVRFISLRFPSSESNLHRRQRRRVQPVGCFFLPNSTTNLPADSKPFVLQNGEDVSDKETVSNGVVLDKKVRARERGAVNNTTKHLWSELVLHHLKDLSWNILFVRNIFELIKSIATTQGLRGFWKGNLLNILRTAPFKAVNFSAYDTYRKQLLRFSGNEETTNFERFIAGAAAGVTATIICLPLDTIRTKIVAPGGETLGGVIGAFQYMIQTEGIFSLYKGLVPSLISMAPSSAVFYGVYDMLKSSYLHSPEGKQRIKNMHKHGQELSAFDQLELGPVRTLLHGAIAGACAEAATYPFEVVRRQLQLQVQSTKLSSLATFVKIVEQGGISALYAGLIPSLLQVLNS*